centromere protein C isoform 2 [Mus musculus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||||
CENP-C_mid | pfam15620 | Centromere assembly component CENP-C middle DNMT3B-binding region; CENP-C is a component of ... |
265-519 | 7.51e-117 | |||||
Centromere assembly component CENP-C middle DNMT3B-binding region; CENP-C is a component of the centromere assembly complex in eukaryotes. CENP-C recruits the DNA methyltransferases DNMT3B, in order to establish the necessary epigenetic DNA-methylation essential for maintenance of chromatin structure and genomic stability. This middle region of CENP-C is the binding-domain for DNMT3B. Binding of CENP-C and DNMT3B to DNA occurs at both centromeric and peri-centromeric satellite repeats. CENP-C and DNMT3B regulate the histone code in these regions. : Pssm-ID: 464777 Cd Length: 260 Bit Score: 356.85 E-value: 7.51e-117
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CENP_C_N super family | cl21417 | Kinetochore assembly subunit CENP-C N-terminal; CENP-C is a vertebrate family that forms a ... |
7-261 | 8.99e-87 | |||||
Kinetochore assembly subunit CENP-C N-terminal; CENP-C is a vertebrate family that forms a core component of the centromeric chromatin. On depletion of CENP-C proper formation of both centromeres and kinetochores is prevented. The N-terminal of CENP-C is necessary for recruitment of some but not all components of the Mis12 complex of the kinetochore. The actual alignment was detected with superfamily member pfam15622: Pssm-ID: 464778 Cd Length: 287 Bit Score: 278.66 E-value: 8.99e-87
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cupin_RmlC-like super family | cl40423 | RmlC-like cupin superfamily; This superfamily contains proteins similar to the RmlC (dTDP ... |
819-903 | 2.18e-31 | |||||
RmlC-like cupin superfamily; This superfamily contains proteins similar to the RmlC (dTDP (deoxythymidine diphosphates)-4-dehydrorhamnose 3,5-epimerase)-like cupins. RmlC is a dTDP-sugar isomerase involved in the synthesis of L-rhamnose, a saccharide required for the virulence of some pathogenic bacteria. Cupins are a functionally diverse superfamily originally discovered based on the highly conserved motif found in germin and germin-like proteins. This conserved motif forms a beta-barrel fold found in all of the cupins, giving rise to the name cupin ('cupa' is the Latin term for small barrel). The active site of members of this superfamily is generally located at the center of a conserved barrel and usually includes a metal ion. The different functional classes in this superfamily include single domain bacterial isomerases and epimerases involved in the modification of cell wall carbohydrates, two domain bicupins such as the desiccation-tolerant seed storage globulins, and multidomain nuclear transcription factors involved in legume root nodulation. The actual alignment was detected with superfamily member pfam11699: Pssm-ID: 477354 [Multi-domain] Cd Length: 85 Bit Score: 117.42 E-value: 2.18e-31
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Name | Accession | Description | Interval | E-value | |||||
CENP-C_mid | pfam15620 | Centromere assembly component CENP-C middle DNMT3B-binding region; CENP-C is a component of ... |
265-519 | 7.51e-117 | |||||
Centromere assembly component CENP-C middle DNMT3B-binding region; CENP-C is a component of the centromere assembly complex in eukaryotes. CENP-C recruits the DNA methyltransferases DNMT3B, in order to establish the necessary epigenetic DNA-methylation essential for maintenance of chromatin structure and genomic stability. This middle region of CENP-C is the binding-domain for DNMT3B. Binding of CENP-C and DNMT3B to DNA occurs at both centromeric and peri-centromeric satellite repeats. CENP-C and DNMT3B regulate the histone code in these regions. Pssm-ID: 464777 Cd Length: 260 Bit Score: 356.85 E-value: 7.51e-117
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CENP_C_N | pfam15622 | Kinetochore assembly subunit CENP-C N-terminal; CENP-C is a vertebrate family that forms a ... |
7-261 | 8.99e-87 | |||||
Kinetochore assembly subunit CENP-C N-terminal; CENP-C is a vertebrate family that forms a core component of the centromeric chromatin. On depletion of CENP-C proper formation of both centromeres and kinetochores is prevented. The N-terminal of CENP-C is necessary for recruitment of some but not all components of the Mis12 complex of the kinetochore. Pssm-ID: 464778 Cd Length: 287 Bit Score: 278.66 E-value: 8.99e-87
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CENP-C_C | pfam11699 | Mif2/CENP-C like; CENP-C_C is a C-terminal family of fungal and eukaryote proteins necessary ... |
819-903 | 2.18e-31 | |||||
Mif2/CENP-C like; CENP-C_C is a C-terminal family of fungal and eukaryote proteins necessary for centromere formation. CENP-C is the inner-kinetochore centromere (CEN) binding protein. In the budding-yeast, Mif2, the yeast homolog, binds in the CDEIII region of the centromere, and has been shown to recruit a substantial subset of all inner and outer kinetochore proteins. Mif2 adopts a cupin fold and is extremely similar both in polypeptide chain conformation and in dimer geometry to the dimerization domain of a bacterial transcription factor. The Mif2 dimer appears to be part of an enhanceosome-like structure that nucleates kinetochore assembly in budding yeast. This C-terminal domain is the region via which CENP-C localizes to centromeres throughout the cell cycle 2,3]. Pssm-ID: 403028 [Multi-domain] Cd Length: 85 Bit Score: 117.42 E-value: 2.18e-31
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cupin_CENP-C_C | cd06993 | centromere-binding protein CENP-C, C-terminal cupin domain; This family includes centromeric ... |
829-904 | 4.60e-27 | |||||
centromere-binding protein CENP-C, C-terminal cupin domain; This family includes centromeric protein C (CENP-C; known as Mif2 in budding yeast and centromere protein 3 or cnp3 in fission yeast), which is an inner kinetochore centromere (CEN)-binding protein found in fungi and metazoans. CENP-C is a component of the CENP-A nucleosome-associated complex (NAC) that plays a central role in assembly of kinetochore proteins, mitotic progression and chromosome segregation. CENP-C localizes to the inner kinetochore plates adjacent to the centromeric DNA and is known to have DNA-binding ability. CENP-C, along with CENP-H, provides a platform onto which the mitotic kinetochore is assembled and thus plays a critical role in the structuring of kinethocore chromatin. The cupin domain at the C-terminus forms a homodimer which is part of an enhanceosome-like structure that nucleates kinetochore assembly in budding yeast. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization. Pssm-ID: 380398 [Multi-domain] Cd Length: 77 Bit Score: 104.93 E-value: 4.60e-27
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PTZ00108 | PTZ00108 | DNA topoisomerase 2-like protein; Provisional |
355-588 | 5.64e-03 | |||||
DNA topoisomerase 2-like protein; Provisional Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 5.64e-03
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Name | Accession | Description | Interval | E-value | |||||
CENP-C_mid | pfam15620 | Centromere assembly component CENP-C middle DNMT3B-binding region; CENP-C is a component of ... |
265-519 | 7.51e-117 | |||||
Centromere assembly component CENP-C middle DNMT3B-binding region; CENP-C is a component of the centromere assembly complex in eukaryotes. CENP-C recruits the DNA methyltransferases DNMT3B, in order to establish the necessary epigenetic DNA-methylation essential for maintenance of chromatin structure and genomic stability. This middle region of CENP-C is the binding-domain for DNMT3B. Binding of CENP-C and DNMT3B to DNA occurs at both centromeric and peri-centromeric satellite repeats. CENP-C and DNMT3B regulate the histone code in these regions. Pssm-ID: 464777 Cd Length: 260 Bit Score: 356.85 E-value: 7.51e-117
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CENP_C_N | pfam15622 | Kinetochore assembly subunit CENP-C N-terminal; CENP-C is a vertebrate family that forms a ... |
7-261 | 8.99e-87 | |||||
Kinetochore assembly subunit CENP-C N-terminal; CENP-C is a vertebrate family that forms a core component of the centromeric chromatin. On depletion of CENP-C proper formation of both centromeres and kinetochores is prevented. The N-terminal of CENP-C is necessary for recruitment of some but not all components of the Mis12 complex of the kinetochore. Pssm-ID: 464778 Cd Length: 287 Bit Score: 278.66 E-value: 8.99e-87
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CENP-C_C | pfam11699 | Mif2/CENP-C like; CENP-C_C is a C-terminal family of fungal and eukaryote proteins necessary ... |
819-903 | 2.18e-31 | |||||
Mif2/CENP-C like; CENP-C_C is a C-terminal family of fungal and eukaryote proteins necessary for centromere formation. CENP-C is the inner-kinetochore centromere (CEN) binding protein. In the budding-yeast, Mif2, the yeast homolog, binds in the CDEIII region of the centromere, and has been shown to recruit a substantial subset of all inner and outer kinetochore proteins. Mif2 adopts a cupin fold and is extremely similar both in polypeptide chain conformation and in dimer geometry to the dimerization domain of a bacterial transcription factor. The Mif2 dimer appears to be part of an enhanceosome-like structure that nucleates kinetochore assembly in budding yeast. This C-terminal domain is the region via which CENP-C localizes to centromeres throughout the cell cycle 2,3]. Pssm-ID: 403028 [Multi-domain] Cd Length: 85 Bit Score: 117.42 E-value: 2.18e-31
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cupin_CENP-C_C | cd06993 | centromere-binding protein CENP-C, C-terminal cupin domain; This family includes centromeric ... |
829-904 | 4.60e-27 | |||||
centromere-binding protein CENP-C, C-terminal cupin domain; This family includes centromeric protein C (CENP-C; known as Mif2 in budding yeast and centromere protein 3 or cnp3 in fission yeast), which is an inner kinetochore centromere (CEN)-binding protein found in fungi and metazoans. CENP-C is a component of the CENP-A nucleosome-associated complex (NAC) that plays a central role in assembly of kinetochore proteins, mitotic progression and chromosome segregation. CENP-C localizes to the inner kinetochore plates adjacent to the centromeric DNA and is known to have DNA-binding ability. CENP-C, along with CENP-H, provides a platform onto which the mitotic kinetochore is assembled and thus plays a critical role in the structuring of kinethocore chromatin. The cupin domain at the C-terminus forms a homodimer which is part of an enhanceosome-like structure that nucleates kinetochore assembly in budding yeast. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization. Pssm-ID: 380398 [Multi-domain] Cd Length: 77 Bit Score: 104.93 E-value: 4.60e-27
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PTZ00108 | PTZ00108 | DNA topoisomerase 2-like protein; Provisional |
355-588 | 5.64e-03 | |||||
DNA topoisomerase 2-like protein; Provisional Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 5.64e-03
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Blast search parameters | ||||
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