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Conserved domains on  [gi|6981484|ref|NP_037007|]
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large ribosomal subunit protein eL39 [Rattus norvegicus]

Protein Classification

eL39 family ribosomal protein( domain architecture ID 10467167)

eL39 family ribosomal protein is the smallest and one of the most basic of the proteins in liver ribosomes

Gene Ontology:  GO:0006412|GO:0003735|GO:0005840
PubMed:  24524803

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L39 pfam00832
Ribosomal L39 protein;
10-50 1.46e-13

Ribosomal L39 protein;


:

Pssm-ID: 425894  Cd Length: 41  Bit Score: 57.20  E-value: 1.46e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 6981484    10 KRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
Cdd:pfam00832  1 KLRLAKALKQNRPVPAWVRLKTDRKVRYNPKRRHWRRTKLK 41
 
Name Accession Description Interval E-value
Ribosomal_L39 pfam00832
Ribosomal L39 protein;
10-50 1.46e-13

Ribosomal L39 protein;


Pssm-ID: 425894  Cd Length: 41  Bit Score: 57.20  E-value: 1.46e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 6981484    10 KRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
Cdd:pfam00832  1 KLRLAKALKQNRPVPAWVRLKTDRKVRYNPKRRHWRRTKLK 41
RPL39 COG2167
Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-49 4.38e-11

Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L39E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441770  Cd Length: 51  Bit Score: 51.04  E-value: 4.38e-11
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*....
gi 6981484   1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
Cdd:COG2167  1 MARNKPLGKKLRLAKALKQNRRVPAWVIVKTNRKVRRNPKRRNWRRSKL 49
rpl39e PRK01242
50S ribosomal protein L39e; Validated
 2-49 2.61e-09

50S ribosomal protein L39e; Validated


Pssm-ID: 179261  Cd Length: 50  Bit Score: 46.52  E-value: 2.61e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 6981484    2 SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
Cdd:PRK01242  1 MRNKPLGKKLRLAKALKQNRRVPAWVIVKTNRRVRRHPKRRHWRRSKL 48
 
Name Accession Description Interval E-value
Ribosomal_L39 pfam00832
Ribosomal L39 protein;
10-50 1.46e-13

Ribosomal L39 protein;


Pssm-ID: 425894  Cd Length: 41  Bit Score: 57.20  E-value: 1.46e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 6981484    10 KRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
Cdd:pfam00832  1 KLRLAKALKQNRPVPAWVRLKTDRKVRYNPKRRHWRRTKLK 41
RPL39 COG2167
Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-49 4.38e-11

Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L39E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441770  Cd Length: 51  Bit Score: 51.04  E-value: 4.38e-11
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*....
gi 6981484   1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
Cdd:COG2167  1 MARNKPLGKKLRLAKALKQNRRVPAWVIVKTNRKVRRNPKRRNWRRSKL 49
rpl39e PRK01242
50S ribosomal protein L39e; Validated
 2-49 2.61e-09

50S ribosomal protein L39e; Validated


Pssm-ID: 179261  Cd Length: 50  Bit Score: 46.52  E-value: 2.61e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 6981484    2 SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
Cdd:PRK01242  1 MRNKPLGKKLRLAKALKQNRRVPAWVIVKTNRRVRRHPKRRHWRRSKL 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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