|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
213-277 |
1.07e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.75 E-value: 1.07e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 277
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
5.28e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 5.28e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
213-278 |
3.28e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 3.28e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 213 VGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 278
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.23e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.23e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
588-1267 |
8.36e-20 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 96.29 E-value: 8.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 588 QQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQHEIE--SLQS-KQDSERSAHAKEMETMQAKLMKIIKEKeDSLE 664
Cdd:TIGR02169 173 EKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERyqALLKeKREYEGYELLKEKEALERQKEAIERQL-ASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 665 AVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELevlqakyTEQSEVignftsqlsAVKEKLLDLDALRkANSEGKLELe 744
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDL-------GEEEQL---------RVKEKIGELEAEI-ASLERSIAE- 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 745 tLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQ 824
Cdd:TIGR02169 313 -KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 825 TRMQDTVNKLH-------QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQL 897
Cdd:TIGR02169 392 EKLEKLKREINelkreldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 898 TKMNDELRLKERSVEELQLKLTKANENAS--------------FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLE 963
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQARaseervrggraveeVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNN 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 964 LEKKMETSYNQCQDLkAKYEKASSET-----KTKHEEILQNLQKM---------LADTEDKLKAA-------------QE 1016
Cdd:TIGR02169 552 VVVEDDAVAKEAIEL-LKRRKAGRATflplnKMRDERRDLSILSEdgvigfavdLVEFDPKYEPAfkyvfgdtlvvedIE 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1017 ANRDLM-------------------------QDMEELKTQADKAKAAQTAED----------AMQIMEQMTKEKTETLAS 1061
Cdd:TIGR02169 631 AARRLMgkyrmvtlegelfeksgamtggsraPRGGILFSRSEPAELQRLRERleglkrelssLQSELRRIENRLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1062 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1141
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1142 TR-DEVTSH-QKLEEERSVLNNQLLEMKKRES-----------------EFRKDADEEKASLQKSISLTSALLTEKDAEL 1202
Cdd:TIGR02169 791 SRiPEIQAElSKLEEEVSRIEARLREIEQKLNrltlekeylekeiqelqEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 1203 EKLRNEVTVLRGEnatAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE 1267
Cdd:TIGR02169 871 EELEAALRDLESR---LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
606-1280 |
2.16e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.12 E-value: 2.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 606 SAEFAELKTQIERLRLdYQHEIESLQSKQDSERSAHAKEMETMQAKLMkIIKEKEDSLEAVKARLDSAEDQHLVEMEDTL 685
Cdd:TIGR02168 259 TAELQELEEKLEELRL-EVSELEEEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 686 NKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDA----LRKANSEGKLELETLRQQLEGAEKQIKNLE 761
Cdd:TIGR02168 337 EELAELE---EKLEELKEELESLEAELEELEAELEELESRLEELEEqletLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 762 TERNAESSKANSITKELQEKELVLtgLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 841
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 842 NVLSSELEKLRENLTDMEAKFKEKDDRED------QLVKAKEK----LENDIAEIMKMSGDNSSQLTKMNDELRLKERSV 911
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGilgvlsELISVDEGyeaaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELG 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 912 EELQLKLTKANENAsfLQKSIGEVtLKAEQSQQQAARKHEEEKKELEEKLLE--LEKKMETSYNQCQDLKAKYE------ 983
Cdd:TIGR02168 572 RVTFLPLDSIKGTE--IQGNDREI-LKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKKLRpgyriv 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 984 --------------KASSETKTKheeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaQTAEDAMQIME 1049
Cdd:TIGR02168 649 tldgdlvrpggvitGGSAKTNSS----ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE--EELEQLRKELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1050 QMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQ 1129
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1130 EENVKLAEELGRTRDEVtsHQKLEEERSVLNNqlLEMKKRESEfrkDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1209
Cdd:TIGR02168 803 EALDELRAELTLLNEEA--ANLRERLESLERR--IAATERRLE---DLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 23821025 1210 TVLRGENATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSsgnTDAQAEEDERAQESQIDFLN 1280
Cdd:TIGR02168 876 EALLNERASLEEA---LALLRSELEELSEELRELESKRSELRRELEEL---REKLAQLELRLEGLEVRIDN 940
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-1117 |
1.27e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.43 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 351 ALQEALKEKQ-----QHIEQLLAERDLERAEVAKATSHVGEIEQELALArdghDQHVLELEAKMDQLRTMVEAADREKVE 425
Cdd:TIGR02168 217 ELKAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQEL----EEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 426 LLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppGDVDMSLSLLQEI 505
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE--AELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 506 SALQEKLEAIHTDHQGEMTSLKEHFG---AREEAFQKEIKALHTATEKLSKENESLRSKLDHANKEnsdvialwksKLET 582
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLELQIAslnNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK----------ELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 583 AIASHQQAMEELKVSFSKGIgTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERS----------------AHAKEME 646
Cdd:TIGR02168 441 ELEELEEELEELQEELERLE-EALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkallKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 647 TMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDT--------------------LNKLQEAEIKVKELEVLQA--- 703
Cdd:TIGR02168 520 GILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAakkaiaflkqnelgrvtflpLDSIKGTEIQGNDREILKNieg 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 704 ---------KYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEG----KLELETLR-------------QQLEGAEKQI 757
Cdd:TIGR02168 600 flgvakdlvKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGyrivTLDGDLVRpggvitggsaktnSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 758 KNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQK 837
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 838 EEQFNVLSSELEKLRENLTDMEAKfkekddredqlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLK 917
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAE--------------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 918 LTKANENASFLQKSIGEVTLKAEQSQQQAARkheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtktkHEEIL 997
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEALLNERASLEEALAL----LRSEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 998 QNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA------AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAR 1071
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVridnlqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 23821025 1072 LQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQA 1117
Cdd:TIGR02168 977 LENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1171 |
6.92e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.58 E-value: 6.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 344 RKISGTTALQEALKEKQQH---IEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAK----MDQLRTMV 416
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALerqKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 417 EAADREKVELLNQLEEEKRKVEDLQFRVEEesitkgdLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvd 496
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAK-------LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK------ 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 497 mslsllQEISALQEKLEAIHTDHQgemTSLKEHFGARE--EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDV-- 572
Cdd:TIGR02169 364 ------EELEDLRAELEEVDKEFA---ETRDELKDYREklEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIea 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 573 -IALWKSKLETAIASHQQAMEELKvSFSKGIGTDSAEFAELKTQIERLrldyQHEIESLQSKQDsERSAHAKEMETMQAK 651
Cdd:TIGR02169 435 kINELEEEKEDKALEIKKQEWKLE-QLAADLSKYEQELYDLKEEYDRV----EKELSKLQRELA-EAEAQARASEERVRG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 652 LMKIIKEKEDSLEAVK---ARLDSAEDQHLVEMEDTL-NKLQEAeikVKELEVLQAKYTE--QSEVIGNFTS-QLSAVKE 724
Cdd:TIGR02169 509 GRAVEEVLKASIQGVHgtvAQLGSVGERYATAIEVAAgNRLNNV---VVEDDAVAKEAIEllKRRKAGRATFlPLNKMRD 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 725 KLLDLDALRKANSEG-KLELETLRQQLEGAEKQI-------KNLETERNAESS-KANSITKELQEKELVLTG-------- 787
Cdd:TIGR02169 586 ERRDLSILSEDGVIGfAVDLVEFDPKYEPAFKYVfgdtlvvEDIEAARRLMGKyRMVTLEGELFEKSGAMTGgsraprgg 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 788 ------LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAK 861
Cdd:TIGR02169 666 ilfsrsEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 862 FKEKDdredqlvkakEKLENDIAEimkmsgdnssqLTKMNDELRLKERSVEELQLKLT--KANENASFLQKSIGEVT-LK 938
Cdd:TIGR02169 746 LSSLE----------QEIENVKSE-----------LKELEARIEELEEDLHKLEEALNdlEARLSHSRIPEIQAELSkLE 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 939 AEQSQQQAARKH-EEEKKELEEKLLELEKKMETSYNQCQDLKAKyekassetKTKHEEILQNLQKMLADTEDKLKAAQEA 1017
Cdd:TIGR02169 805 EEVSRIEARLREiEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ--------IKSIEKEIENLNGKKEELEEELEELEAA 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1018 NRDLMQDMEELKTQADKAKAAqtaedamqiMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENnLKTVEELNKSKELL 1097
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQ---------LRELERKIEELEAQIEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDEEI 946
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1098 SVENQKMEEFKKEIETLKQAaaqksqqLSALQEENVK----LAEELGRTRDEVTSHQKLEEERSVLNNQL--LEMKKRES 1171
Cdd:TIGR02169 947 PEEELSLEDVQAELQRVEEE-------IRALEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILERIeeYEKKKREV 1019
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
412-1249 |
1.03e-15 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 83.10 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 412 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVsEKSRIMELEKDLALRAQEVAELRRRLESSKp 491
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE-EYLLYLDYLKLNEERIDLLQELLRDEQEEI- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 492 pgdvdmsLSLLQEISALQEKLEAIHTDHQGEMtslkehfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD 571
Cdd:pfam02463 254 -------ESSKQEIEKEEEKLAQVLKENKEEE---------KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 572 VIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAK 651
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 652 LMKIIKEKEDSLEAVKARldSAEDQHLVEMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIgnftsQLSAVKEKLLDLDA 731
Cdd:pfam02463 398 ELKSEEEKEAQLLLELAR--QLEDLLKEEKKEELEILEEEE---ESIELKQGKLTEEKEEL-----EKQELKLLKDELEL 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 732 LRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLqdslnqvnQVKETLEKELQTLKE 811
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRI--------ISAHGRLGDLGVAVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 812 KFASTSEEAVSAQtRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSG 891
Cdd:pfam02463 540 NYKVAISTAVIVE-VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADED 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 892 DNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeeKKELEEKLLELEKKMETS 971
Cdd:pfam02463 619 DKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL----EIQELQEKAESELAKEEI 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 972 YNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK----LKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQI 1047
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKineeLKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1048 MEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA 1127
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1128 LQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALL-TEKDAELEKLR 1206
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERiKEEAEILLKYE 934
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 23821025 1207 NEVTVLRGENATAKSLhsvvqtLESDKVKLELKVKNLELQLKE 1249
Cdd:pfam02463 935 EEPEELLLEEADEKEK------EENNKEEEEERNKRLLLAKEE 971
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
663-1215 |
1.49e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 1.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 663 LEAVKARLDSAEDqHLVEMEDTLNKLQ-EAEIKVK------ELEVLQAKYteqsevignftsQLSAVKEKLLDLDALRKA 735
Cdd:COG1196 181 LEATEENLERLED-ILGELERQLEPLErQAEKAERyrelkeELKELEAEL------------LLLKLRELEAELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 736 NSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANS-------ITKELQEKELVLTGLQDSLNQVNQVKETLEKELQT 808
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEaqaeeyeLLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 809 LKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 888
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 889 MSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQ--SQQQAARKHEEEKKELEEKLLELEK 966
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAllELLAELLEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 967 KMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ----KMLADTEDKLKAAQEA------NRDLMQDMEELKTQADKAK 1036
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavAVLIGVEAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1037 AAQTAEDAMQIMEQMTKEKTETLASL------------EDTKQTNARLQNELDTLKENNLKT--------------VEEL 1090
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALArgaigaavdlvaSDLREADARYYVLGDTLLGRTLVAarleaalrravtlaGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1091 NKSKELLSVENQKMEE---FKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMK 1167
Cdd:COG1196 648 EVTLEGEGGSAGGSLTggsRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 23821025 1168 KRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1215
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
613-1310 |
2.71e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 81.70 E-value: 2.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 613 KTQIERLRLDYQHEIESLQSKQDSERSAHAKE-------METMQAKLMKIIKEKeDSLEAVKARLDSAEDQHLVEMEDTL 685
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQkfylrqsVIDLQTKLQEMQMER-DAMADIRRRESQSQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 686 NKLQEAE-IKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDAL--RKANSEGKLELETLRQQLEGAEKQIKNLET 762
Cdd:pfam15921 152 HELEAAKcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEAsgKKIYEHDSMSTMHFRSLGSAISKILRELDT 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 763 ERN-------AESSKANSITKELQEK-ELVLTGLQDslnQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ----DT 830
Cdd:pfam15921 232 EISylkgrifPVEDQLEALKSESQNKiELLLQQHQD---RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiqeQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 831 VNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEK-DDREDQLVKAKEKLENDIAE---IMKMSGDNSSQLTKMNDEL-- 904
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEARTErdqFSQESGNLDDQLQKLLADLhk 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 905 RLKERSVEELQLKLTKANENASFLqkSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDlKAKYEK 984
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDTGNSI--TIDHLRRELDDRNMEVQR---------------LEALLKAMKSECQG-QMERQM 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 985 ASSETKTKHEEILQNLQKMLADTEDKL-KAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMqimEQMTKEKTETLASLE 1063
Cdd:pfam15921 451 AAIQGKNESLEKVSSLTAQLESTKEMLrKVVEELTAKKMTLESSERTVSDLTASLQEKERAI---EATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1064 DTKQTNARLQNELDTLKenNLKTveELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTR 1143
Cdd:pfam15921 528 LKLQELQHLKNEGDHLR--NVQT--ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1144 DEVTSHQKLEEERsvlnnqllEMKKRESEFR-KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE-NATAKS 1221
Cdd:pfam15921 604 LELQEFKILKDKK--------DAKIRELEARvSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNElNSLSED 675
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1222 LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVdlQRKNQD-LKMKVEMM 1300
Cdd:pfam15921 676 YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA--KRGQIDaLQSKIQFL 753
|
730
....*....|
gi 23821025 1301 SEAALNGNGE 1310
Cdd:pfam15921 754 EEAMTNANKE 763
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
388-1260 |
3.09e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 78.26 E-value: 3.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 388 EQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVEllnqleeEKRKVEDLQfRVEEESITKGD--LEVATVSEKSRI 465
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-------EARKAEDAR-KAEEARKAEDAkrVEIARKAEDARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 466 MELEKDlALRAQEVAELRRRLESSKPpgdvdmslsllQEISALQEKLEAIHTDHQGEMTSLKEhfgAREEAFQKEIKALH 545
Cdd:PTZ00121 1166 AEEARK-AEDAKKAEAARKAEEVRKA-----------EELRKAEDARKAEAARKAEEERKAEE---ARKAEDAKKAEAVK 1230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 546 TATEKLSKENESLRSKLDHANKE----NSDVIALWKSKLETAIASHQQAMEELKVSFSKGiGTDSAEFAELKTQIERLRL 621
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEirkfEEARMAHFARRQAAIKAEEARKADELKKAEEKK-KADEAKKAEEKKKADEAKK 1309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 622 DYQheieslQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQEAEIKVKELEVL 701
Cdd:PTZ00121 1310 KAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD----EAEAAEEKAEAAEKKKEEAKKK 1379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 702 QAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQqlegAEKQIKNLETERNAESS-KANSITKELQE 780
Cdd:PTZ00121 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK----AEEKKKADEAKKKAEEAkKADEAKKKAEE 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 781 KelvltglQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfNVLSSELEKLRENLTDMEA 860
Cdd:PTZ00121 1456 A-------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA-KKKADEAKKAEEAKKADEA 1527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 861 KFKEKDDREDQLVKAKEKLENDiaEIMKMSGDNSSQLTKMNDElrlKERSVEELQLKLTKANENASFLQKSIGEVTLKAE 940
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKAD--ELKKAEELKKAEEKKKAEE---AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 941 QSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEilqnlqkmladtEDKLKAAQEANRD 1020
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE------------ENKIKAAEEAKKA 1670
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1021 lmqdmEELKTQADKAKAAQtaEDAMQIMEQMTKEKTET--LASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKElls 1098
Cdd:PTZ00121 1671 -----EEDKKKAEEAKKAE--EDEKKAAEALKKEAEEAkkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE--- 1740
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1099 VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQ-----LLEMKKRESEF 1173
Cdd:PTZ00121 1741 EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFdnfanIIEGGKEGNLV 1820
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1174 RKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLElQLKENKRQ 1253
Cdd:PTZ00121 1821 INDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIE-KIDKDDIE 1899
|
....*..
gi 23821025 1254 LSSSSGN 1260
Cdd:PTZ00121 1900 REIPNNN 1906
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-1001 |
3.30e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 78.24 E-value: 3.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 356 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELAL----ARDGHD---QHVLELEAKMDQLRTmveaadrekv 424
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIiqeqARNQNSmymRQLSDLESTVSQLRS---------- 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 425 ellnQLEEEKRKVEDlqfrveeesitkgdlevatvseksRIMELEKDLALRAQEVAELR-RRLESSKPPGDVDmslsllq 503
Cdd:pfam15921 332 ----ELREAKRMYED------------------------KIEELEKQLVLANSELTEARtERDQFSQESGNLD------- 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 504 eiSALQEKLEAIHTdHQGEMTSLKEhfgareeafqkEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKskletA 583
Cdd:pfam15921 377 --DQLQKLLADLHK-REKELSLEKE-----------QNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLK-----A 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 584 IASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAhakemETMQAKLMKIIKEKEDSL 663
Cdd:pfam15921 438 MKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS-----ERTVSDLTASLQEKERAI 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 664 EAVKAR---------LDSAEDQHLVEMEDTLN---------KLQEAEiKVKELEVLQAKYTEQSEVIGNFTSQLSAVkek 725
Cdd:pfam15921 513 EATNAEitklrsrvdLKLQELQHLKNEGDHLRnvqtecealKLQMAE-KDKVIEILRQQIENMTQLVGQHGRTAGAM--- 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 726 LLDLDALRKANSEGKLELETLR-------QQLEGAEKQIKNLETER----NAESSKANSITKELQEKELVLTGLQDSLNQ 794
Cdd:pfam15921 589 QVEKAQLEKEINDRRLELQEFKilkdkkdAKIRELEARVSDLELEKvklvNAGSERLRAVKDIKQERDQLLNEVKTSRNE 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 795 VNqvkeTLEKELQTLKEKFASTSEEavsaqtrMQDTVNKLHQkeeQFNVLSSELEKLRENLTDMEAKfkekddredqlvk 874
Cdd:pfam15921 669 LN----SLSEDYEVLKRNFRNKSEE-------METTTNKLKM---QLKSAQSELEQTRNTLKSMEGS------------- 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 875 akeklendIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQ----KSIGEVTLKAEQSQQQAA--- 947
Cdd:pfam15921 722 --------DGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKeeknKLSQELSTVATEKNKMAGele 793
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 23821025 948 --RKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ 1001
Cdd:pfam15921 794 vlRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
519-1181 |
5.44e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 77.49 E-value: 5.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 519 HQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSF 598
Cdd:PTZ00121 1065 HVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEE 1144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 599 SKGigTDSAEFAELKTQIERLRldyqhEIESLQSKQDSERSAHAKEMEtmQAKLMKIIKEKEDSLEAVKAR----LDSAE 674
Cdd:PTZ00121 1145 ARK--AEDAKRVEIARKAEDAR-----KAEEARKAEDAKKAEAARKAE--EVRKAEELRKAEDARKAEAARkaeeERKAE 1215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 675 DQHLVEMEDTLNKLQEAE-IKVKELEVLQAKYTEQSEVIGNFTSQLSA---VKEKLLDLDALRKANSEGKLELETLRQQL 750
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEeAKKDAEEAKKAEEERNNEEIRKFEEARMAhfaRRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 751 EGAEKQIKNLETERNAESS-KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ- 828
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAkKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEe 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 829 -----DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 903
Cdd:PTZ00121 1376 akkkaDAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 904 LRLKERSVE--ELQLKLTKANENASFLQKSiGEVTLKAEQSQQQA--ARKHEEEKKELEEKLLELEKKMETSYNQCQDLK 979
Cdd:PTZ00121 1456 AKKAEEAKKkaEEAKKADEAKKKAEEAKKA-DEAKKKAEEAKKKAdeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 980 AKYEKASSETKTKHEEILQnlQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETL 1059
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKK--AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1060 ASLEDTKQTNARLQNE---------LDTLKENNLKTVEELNKSKELLSV----ENQKMEEFKKEIETLKQAAAQKSQQLS 1126
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAeeekkkveqLKKKEAEEKKKAEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 1127 AL--QEENVKLAEELGRTR-DEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEK 1181
Cdd:PTZ00121 1693 ALkkEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
211-271 |
1.66e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.49 E-value: 1.66e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 23821025 211 LKVGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
742-1257 |
3.22e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 74.67 E-value: 3.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 742 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAV 821
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 822 SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMN 901
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 902 ---DELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHeeekkeleekllelekkmetsyNQCQDL 978
Cdd:TIGR04523 201 lllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----------------------TQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 979 KAKYEKASSETKTKHEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTet 1058
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNKK-IKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNK-- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1059 laSLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL--------------KQAAAQKSQQ 1124
Cdd:TIGR04523 336 --IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqEKLNQQKDEQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1125 LSALQEENVKLAEELGRTRDEVTSHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKAS---LQKSISLTSALLTE 1197
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQKELKS 493
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23821025 1198 KDAELEKLRNEVTVLRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1257
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
717-1275 |
7.15e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 7.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 717 SQLSAVKEKLLDLDALRKansEGKLELETLRQQLEGAEKQIKNLETERNAESS----KANSITKELQEKELVLTGLQDSL 792
Cdd:TIGR02168 179 RKLERTRENLDRLEDILN---ELERQLKSLERQAEKAERYKELKAELRELELAllvlRLEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 793 NQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQL 872
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 873 VKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSI----GEVTLKAEQSQQQAAR 948
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIaslnNEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 949 KHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTkHEEILQNLQKMLADTEDKLKAAQE------ANRDLM 1022
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER-LEEALEELREELEEAEQALDAAERelaqlqARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1023 QDMEELKTQADKAKAAQ------------------------------------------TAEDAMQIMEQMTKEKTETLA 1060
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALlknqsglsgilgvlselisvdegyeaaieaalggrlqavvveNLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1061 SLE---------------------------------------------------DTKQTNARLQNELDtlKENNLKTVE- 1088
Cdd:TIGR02168 575 FLPldsikgteiqgndreilkniegflgvakdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLR--PGYRIVTLDg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1089 -------------------ELNKSKELLSVEnQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSH 1149
Cdd:TIGR02168 653 dlvrpggvitggsaktnssILERRREIEELE-EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1150 QKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAK----SLHSV 1225
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRealdELRAE 811
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 23821025 1226 VQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQ 1275
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-915 |
1.17e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 1.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 351 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 431 EEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPpgDVDMSLSLLQEISALQE 510
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE--ELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 511 KLEAIHTDHQGEMTSLKEhfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQA 590
Cdd:COG1196 369 EAEAELAEAEEELEELAE----ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 591 MEELKvsfskgigtDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEmETMQAKLMKIIKEKEDSLEAVKARL 670
Cdd:COG1196 445 EEAAE---------EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 671 DSAEDQHL---VEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVignftsqlsavkekLLDLDALRKANSEGKLELETLR 747
Cdd:COG1196 515 LLAGLRGLagaVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV--------------AAAAIEYLKAAKAGRATFLPLD 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 748 QQlegAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRM 827
Cdd:COG1196 581 KI---RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 828 QDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLK 907
Cdd:COG1196 658 AGGSLTGGSRREL---LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
....*...
gi 23821025 908 ERSVEELQ 915
Cdd:COG1196 735 EELLEELL 742
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
775-1303 |
1.32e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 72.90 E-value: 1.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 775 TKELQEK-ELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH-------QKEEQFNVLSS 846
Cdd:pfam01576 17 VKERQQKaESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHelesrleEEEERSQQLQN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 847 ELEKLRENLTDMEAKFKEKDDREDQL----VKAKEKLENDIAEIMKMSGDNSsqltKMNDELRLKERSVEELQLKLTKAN 922
Cdd:pfam01576 97 EKKKMQQHIQDLEEQLDEEEAARQKLqlekVTTEAKIKKLEEDILLLEDQNS----KLSKERKLLEERISEFTSNLAEEE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 923 ENASFLQK---------SIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmetsynQCQDLKAKYEKASSETKTKH 993
Cdd:pfam01576 173 EKAKSLSKlknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQE----------QIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 994 EEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQ--IMEQMTKEKTEtlasLEDTKQTNAr 1071
Cdd:pfam01576 243 EE-LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdLGEELEALKTE----LEDTLDTTA- 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1072 LQNELDTLKENNL----KTVEELNKS-----KELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrt 1142
Cdd:pfam01576 317 AQQELRSKREQEVtelkKALEEETRSheaqlQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAEL--- 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1143 RDEVTSHQKLEEERSVLNNQLLEMKKRESE---FRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATA 1219
Cdd:pfam01576 394 RTLQQAKQDSEHKRKKLEGQLQELQARLSEserQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1220 KSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSsssgntdaQAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEM 1299
Cdd:pfam01576 474 QEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLE--------EEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEA 542
|
....
gi 23821025 1300 MSEA 1303
Cdd:pfam01576 543 LEEG 546
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
406-1190 |
2.89e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 71.69 E-value: 2.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 406 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESITKGDLE------VATVSEKSRIMELEKDLAL----- 474
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESNELHEKQKfylrqsVIDLQTKLQEMQMERDAMAdirrr 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 475 RAQEVAELRRRLESSKPPGDVDMSLS--LLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEI----------- 541
Cdd:pfam15921 136 ESQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIyehdsmstmhf 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 542 KALHTATEKLSKENESLRSKLdhankenSDVIALWKSKLETAIASHQQAMEELkvsfskgigtdsaeFAELKTQIERLRL 621
Cdd:pfam15921 216 RSLGSAISKILRELDTEISYL-------KGRIFPVEDQLEALKSESQNKIELL--------------LQQHQDRIEQLIS 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 622 DYQHEIESLQSKQDSERS---AHAKEMETMQ-------AKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEA 691
Cdd:pfam15921 275 EHEVEITGLTEKASSARSqanSIQSQLEIIQeqarnqnSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 692 EIKVKELEVLQAKYTEQSeviGNFTSQLSAV------KEKLLDLDA-----LRKANSEGKLELETLRQQLEGAEKQIKNL 760
Cdd:pfam15921 355 NSELTEARTERDQFSQES---GNLDDQLQKLladlhkREKELSLEKeqnkrLWDRDTGNSITIDHLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 761 ETERNAESSKANSitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLK---EKFASTSEEAVSAQTRMQDTVNKLHQK 837
Cdd:pfam15921 432 EALLKAMKSECQG---QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRkvvEELTAKKMTLESSERTVSDLTASLQEK 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 838 EEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLE---------NDIAEIMKMSGDNSSQLT---------- 898
Cdd:pfam15921 509 ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEalklqmaekDKVIEILRQQIENMTQLVgqhgrtagam 588
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 899 ---KMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQ-QAARKHEEEKKELEEKLLELEKKMETSYNQ 974
Cdd:pfam15921 589 qveKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvNAGSERLRAVKDIKQERDQLLNEVKTSRNE 668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 975 CQDLKAKYEKASSETKTKHEEILQNLQKMladtEDKLKAAQ---EANRDLMQDMEELKTQADKAkaaqtaedAMQIMEQM 1051
Cdd:pfam15921 669 LNSLSEDYEVLKRNFRNKSEEMETTTNKL----KMQLKSAQselEQTRNTLKSMEGSDGHAMKV--------AMGMQKQI 736
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1052 TKEKTETLAsledtkqtnarLQNELDTLKEnnlkTVEELNKSKELLSVENQKMeefkkeietlkqaaaqkSQQLSALQEE 1131
Cdd:pfam15921 737 TAKRGQIDA-----------LQSKIQFLEE----AMTNANKEKHFLKEEKNKL-----------------SQELSTVATE 784
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 23821025 1132 NVKLAEELGRTRDEvtsHQKLEEErsvLNNQLLEMKKRESEFRKDADEEKASLQKSISL 1190
Cdd:pfam15921 785 KNKMAGELEVLRSQ---ERRLKEK---VANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
646-1310 |
3.22e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.25 E-value: 3.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 646 ETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemedtlNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEK 725
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIE--------ELIKEKE---KELEEVLREINEISSELPELREELEKLEKE 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 726 LLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLET---ERNAESSKANSITKELQEkelvLTGLQDSLNQVNQVKETL 802
Cdd:PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEErieELKKEIEELEEKVKELKE----LKEKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 803 EKELQTLKEKFASTSEEAVSAQTRMQDTVNKlhqkeeqfnvlSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENd 882
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEK-----------EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 883 iaeimkmsgdnssqltKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLL 962
Cdd:PRK03918 374 ----------------LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 963 ELEKKMETSYNQCQDLKAKYE---KASSETKTKHEEILQNLQKMLADTEDKLKAAQE--ANRDLMQDMEELKTQADKAKA 1037
Cdd:PRK03918 438 CPVCGRELTEEHRKELLEEYTaelKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNL 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1038 aqtaedamqimEQMTKEKTEtlasLEDTKQTNARLQNELDTLKEnNLKTVEELNKSKELLSVENQKMEEFKKEIETlkqa 1117
Cdd:PRK03918 518 -----------EELEKKAEE----YEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLK---- 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1118 aaqksqqlsALQEENVKLAEELGRTRDEvtshqkLEEersvLNNQLLEMKKRESEFRkDADEEKASLQKSISLTSALLTE 1197
Cdd:PRK03918 578 ---------ELEELGFESVEELEERLKE------LEP----FYNEYLELKDAEKELE-REEKELKKLEEELDKAFEELAE 637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1198 KDAELEKLRNEVTVLRGENATAKSlhsvvQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTD---AQAEEDERAQEs 1274
Cdd:PRK03918 638 TEKRLEELRKELEELEKKYSEEEY-----EELREEYLELSRELAGLRAELEELEKRREEIKKTLEklkEELEEREKAKK- 711
|
650 660 670
....*....|....*....|....*....|....*.
gi 23821025 1275 QIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGE 1310
Cdd:PRK03918 712 ELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
613-1244 |
3.60e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.22 E-value: 3.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 613 KTQIERLRLDYQHEIESLQS----KQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKL 688
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAqieeKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV-LEEHEERREEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 689 QEAEikvKELEVLQAKYTEqsevignftsqlsAVKEKlldlDALRKansegklELETLRQQLEGAEKQIKNLETERNAES 768
Cdd:PRK02224 254 ETLE---AEIEDLRETIAE-------------TERER----EELAE-------EVRDLRERLEELEEERDDLLAEAGLDD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 769 SKANSITKELQEKELVLTGLQDSLNQV-------NQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 841
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECrvaaqahNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 842 NVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAeimkmsgdnssqltkmndELRLKERSVEElqlkltKA 921
Cdd:PRK02224 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA------------------ELEATLRTARE------RV 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 922 NENASFLqksigEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKT-----KHEEI 996
Cdd:PRK02224 443 EEAEALL-----EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAedrieRLEER 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 997 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQAD-KAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNE 1075
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1076 LDTLkENNLKTVEELN-KSKELLSVENQKMEefkkeietlkqaaaqksqQLSALQEENVKLAEELGRTRDEvTSHQKLEE 1154
Cdd:PRK02224 598 LAAI-ADAEDEIERLReKREALAELNDERRE------------------RLAEKRERKRELEAEFDEARIE-EAREDKER 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1155 ERSVLNNqlLEMKKRESEfrkdadEEKASLQKSIsltsALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLES--D 1232
Cdd:PRK02224 658 AEEYLEQ--VEEKLDELR------EERDDLQAEI----GAVENELEELEELRERREALENRVEALEALYDEAEELESmyG 725
|
650
....*....|..
gi 23821025 1233 KVKLELKVKNLE 1244
Cdd:PRK02224 726 DLRAELRQRNVE 737
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-886 |
4.21e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 4.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGH---DQHVLELEAKMDQ 411
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRrelEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 412 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskp 491
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE---- 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 492 pgdvdmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD 571
Cdd:COG1196 404 --------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 572 VIALWKSKLETAIAS----HQQAMEELKVSFSKGIGtdsaefaeLKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMET 647
Cdd:COG1196 476 EAALAELLEELAEAAarllLLLEAEADYEGFLEGVK--------AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 648 MQAKLMKIIKEKEDSLEAVKARLDS-AEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKL 726
Cdd:COG1196 548 LQNIVVEDDEVAAAAIEYLKAAKAGrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 727 LDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKEL 806
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 807 QTLKEKFASTSEEAVSAQtrmqdtvnKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEI 886
Cdd:COG1196 708 ELAEAEEERLEEELEEEA--------LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-886 |
5.08e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 5.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 344 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREK 423
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 424 VELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppGDVDMSLSLLQ 503
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE--EALEEAAEEEA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 504 EISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETA 583
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 584 IASHQQAMEELKVSFSKGIGTDSAEfaELKTQIERLRLDYQHEIESLQSkqDSERSAHAKEMETMQAKLMKIIKEKEDSL 663
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDE--VAAAAIEYLKAAKAGRATFLPL--DKIRARAALAAALARGAIGAAVDLVASDL 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 664 EAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLEL 743
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 744 ETLRQQLEGAEKQIKNLETERNAESSkansitKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSA 823
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEE------ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23821025 824 QTrMQDTVNKLHQKEEQF---NVLS-SELEKLRENLTDMEAKfkekddREDqLVKAKEKLENDIAEI 886
Cdd:COG1196 763 EE-LERELERLEREIEALgpvNLLAiEEYEELEERYDFLSEQ------RED-LEEARETLEEAIEEI 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
904-1249 |
5.36e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 5.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 904 LRLKERSvEELQLKLTKANENASFLQKSIGEV-----TL-----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 973
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELerqlkSLerqaeKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 974 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADtEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEDAMQIMEQMTK 1053
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALANEISRLEQQ--KQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1054 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1133
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1134 KLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDA-DEEKASLQKSISLTSALLTEKDAELEKLRNEVTVL 1212
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAELEElEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350
....*....|....*....|....*....|....*..
gi 23821025 1213 RGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1249
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
5.83e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.48 E-value: 5.83e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 23821025 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
679-1041 |
6.71e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.48 E-value: 6.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 679 VEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEvignftsQLSAVKEKLLDLDALRKanSEGKLELETLRQQLEGAEKQIK 758
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLE-------RLRREREKAERYQALLK--EKREYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 759 NLETERNAESSKANSITKELQEKELVLTGLQDSLNQVN-QVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQK 837
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 838 EEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimkmsgdnssqltkmnDELRLKERSVEELQLK 917
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK---------------------EELEDLRAELEEVDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 918 LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELekkmetsyNQCQDLKAKYEKASSETKTKHEEI- 996
Cdd:TIGR02169 380 FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLN--------AAIAGIEAKINELEEEKEDKALEIk 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 23821025 997 -----LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 1041
Cdd:TIGR02169 452 kqewkLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
646-1204 |
6.94e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 70.05 E-value: 6.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 646 ETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvEMEDTLNKLQEAEIKVKELEVLQAKYTEQ----SEVIGNFTSQLSA 721
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEK----ELEKLNNKYNDLKKQKEELENELNLLEKEklniQKNIDKIKNKLLK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 722 VKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKEL----QEKELVLTGLQDSLNQVNQ 797
Cdd:TIGR04523 199 LELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnqlkDEQNKIKKQLSEKQKELEQ 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 798 VKE---TLEKELQTLKEKFASTSEEAV------------SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKF 862
Cdd:TIGR04523 279 NNKkikELEKQLNQLKSEISDLNNQKEqdwnkelkselkNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 863 KEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAEQS 942
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER--LKETII 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 943 QQQAARKheeekkeleeKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEI---LQNLQKMLADTEDKLKAAQEANR 1019
Cdd:TIGR04523 437 KNNSEIK----------DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIkqnLEQKQKELKSKEKELKKLNEEKK 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1020 DLMQDMEELKTQADKAKAAQTA-EDAMQIMEQMTKEKTETLASLEDTKQTNA------RLQNELDTLKENNLKTVEELNK 1092
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKlESEKKEKESKISDLEDELNKDDFELKKENlekeidEKNKEIEELKQTQKSLKKKQEE 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1093 SKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrtRDEVTSHQKLEEERSVLNNQLLEMKKRESE 1172
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII---KNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
570 580 590
....*....|....*....|....*....|..
gi 23821025 1173 FRKDADEEKASLQKSISLTSALLTEKDAELEK 1204
Cdd:TIGR04523 664 IIKKIKESKTKIDDIIELMKDWLKELSLHYKK 695
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
390-928 |
2.17e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 68.99 E-value: 2.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 390 ELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKR----------KVEDLQFRVEEESITKGDLEVATV 459
Cdd:pfam15921 357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLK 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 460 SEKSRIM-ELEKDLAL------RAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGA 532
Cdd:pfam15921 437 AMKSECQgQMERQMAAiqgkneSLEKVSSLTAQLESTK-----EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 533 REeAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIAL-----WKSKLETAIASHQQAMEELKVSFSKGIGTDSA 607
Cdd:pfam15921 512 IE-ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqmaEKDKVIEILRQQIENMTQLVGQHGRTAGAMQV 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 608 EFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKaRLDSAEDQHLVEMEDTLNK 687
Cdd:pfam15921 591 EKAQLEKEINDRRLELQ-EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVK-DIKQERDQLLNEVKTSRNE 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 688 LQEAEikvKELEVLQAKYTEQSEVIGNFTSQLsavkeklldldalrkansegKLELETLRQQLEGAEKQIKNLETERNAE 767
Cdd:pfam15921 669 LNSLS---EDYEVLKRNFRNKSEEMETTTNKL--------------------KMQLKSAQSELEQTRNTLKSMEGSDGHA 725
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 768 SSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHqkeeqfnVLSSE 847
Cdd:pfam15921 726 MKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE-------VLRSQ 798
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 848 LEKLRENLTDMEA-------KFKEKDD----REDQLVKAKEKLENDIAEimkMSGDNSSQLTKMNDELrLKERSVEELQL 916
Cdd:pfam15921 799 ERRLKEKVANMEValdkaslQFAECQDiiqrQEQESVRLKLQHTLDVKE---LQGPGYTSNSSMKPRL-LQPASFTRTHS 874
|
570
....*....|..
gi 23821025 917 KLTKANENASFL 928
Cdd:pfam15921 875 NVPSSQSTASFL 886
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
416-1209 |
2.45e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.56 E-value: 2.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 416 VEAADREKVELLNQLEEEKRKVEDLQFRVEEesitkgdlevatVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdv 495
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDE------------KRQQLERLRREREKAERYQALLKEKREYEGYE----- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 496 dmslsLLQEISALQEKLEAIhtdhQGEMTSLKEHFgareEAFQKEIkalhtatEKLSKENESLRSKLDHANKENSDvial 575
Cdd:TIGR02169 228 -----LLKEKEALERQKEAI----ERQLASLEEEL----EKLTEEI-------SELEKRLEEIEQLLEELNKKIKD---- 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 576 wksKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRldyqhEIESLQSKQDSERSAHAKEMETMQ---AKL 652
Cdd:TIGR02169 284 ---LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-----KLEAEIDKLLAEIEELEREIEEERkrrDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 653 MKIIKEKEDSLEAVKARLDSAE----------DQHLVEMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAV 722
Cdd:TIGR02169 356 TEEYAELKEELEDLRAELEEVDkefaetrdelKDYREKLEKLKREINELK---RELDRLQEELQRLSEELADLNAAIAGI 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 723 KEKLLDLDA----LRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQV 798
Cdd:TIGR02169 433 EAKINELEEekedKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 799 KETLEK----------ELQTLKEKFASTSEEAVSAqtRMQDTV---------------------------NKLHQKEeqf 841
Cdd:TIGR02169 513 EEVLKAsiqgvhgtvaQLGSVGERYATAIEVAAGN--RLNNVVveddavakeaiellkrrkagratflplNKMRDER--- 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 842 nvlsSELEKLREN-LTDMEAKFKEKDDREDQLVK--------------AKE--------KLENDIAEIM-KMSGDNSSQL 897
Cdd:TIGR02169 588 ----RDLSILSEDgVIGFAVDLVEFDPKYEPAFKyvfgdtlvvedieaARRlmgkyrmvTLEGELFEKSgAMTGGSRAPR 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 898 TKMNDELRLKERsVEELQLKLTKANENASFLQKSIGEvtLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQD 977
Cdd:TIGR02169 664 GGILFSRSEPAE-LQRLRERLEGLKRELSSLQSELRR--IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 978 LKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEA-----NRDLMQDMEELKTQADKAKAA-QTAEDAMQIMEQM 1051
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAlndleARLSHSRIPEIQAELSKLEEEvSRIEARLREIEQK 820
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1052 TKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKskellsvenqKMEEFKKEIETLKQAAAQKSQQLSALQEE 1131
Cdd:TIGR02169 821 LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG----------KKEELEEELEELEAALRDLESRLGDLKKE 890
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 1132 NVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1209
Cdd:TIGR02169 891 RDELEAQLRELERKI---EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEE 965
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
421-888 |
6.57e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 6.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 421 REKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELR---RRLESSKPPGDVDM 497
Cdd:PRK03918 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEekvKELKELKEKAEEYI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 498 SLS-------------------LLQEISALQEKLEAIHtdhqgEMTSLKEHFGAREEAFQKEIKALhtatEKLSKENESL 558
Cdd:PRK03918 297 KLSefyeeyldelreiekrlsrLEEEINGIEERIKELE-----EKEERLEELKKKLKELEKRLEEL----EERHELYEEA 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 559 RSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSK---GIGTDSAEFAELKTQIERL-----------RLDYQ 624
Cdd:PRK03918 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKitaRIGELKKEIKELKKAIEELkkakgkcpvcgRELTE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 625 HEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKedsleaVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKE--LEVLQ 702
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL------RELEKVLKKESELIKLKELAEQLKELEEKLKKynLEELE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 703 AKYTEQSEV---IGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQ 779
Cdd:PRK03918 522 KKAEEYEKLkekLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFY 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 780 EKELVLTGLQDSLnqvnqvkETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNV-----LSSELEKLREN 854
Cdd:PRK03918 602 NEYLELKDAEKEL-------EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEeeyeeLREEYLELSRE 674
|
490 500 510
....*....|....*....|....*....|....
gi 23821025 855 LTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 888
Cdd:PRK03918 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
848-1256 |
8.63e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 8.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 848 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSV----------EELQLK 917
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekevkelEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 918 LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELE-KKMETSYNQCQDLKAKYEKASSE---TKTKH 993
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElKEKAEEYIKLSEFYEEYLDELREiekRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 994 EEILQNLQKMLADTEDK---LKAAQEANRDLMQDMEELKtqadkaKAAQTAEDAMQIMEQMTKEKTETlasledTKQTNA 1070
Cdd:PRK03918 320 EEEINGIEERIKELEEKeerLEELKKKLKELEKRLEELE------ERHELYEEAKAKKEELERLKKRL------TGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1071 RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEEN-----VKLAEELGRTRDE 1145
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1146 VtshQKLEEERSVLNNQLLEMKK---RESEF---RKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATA 1219
Cdd:PRK03918 468 L---KEIEEKERKLRKELRELEKvlkKESELiklKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSL 544
|
410 420 430
....*....|....*....|....*....|....*..
gi 23821025 1220 KSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSS 1256
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1031-1304 |
2.85e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 2.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1031 QADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKE 1110
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1111 IETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISL 1190
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEEL---EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1191 TSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDER 1270
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270
....*....|....*....|....*....|....
gi 23821025 1271 AQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAA 1304
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
427-1114 |
4.04e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 4.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 427 LNQLEEEKRKVEDLQFRVEEEsitkgdlevatvseksrIMELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEIS 506
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTE-----------------IKKKEKELEKLNNKYNDLKKQKEELE-----NELNLLEKEKL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 507 ALQEKLEAIHTDHqgemtSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD---VIALWKSKLETA 583
Cdd:TIGR04523 184 NIQKNIDKIKNKL-----LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQL 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 584 IASHQQAMEELK------VSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIK 657
Cdd:TIGR04523 259 KDEQNKIKKQLSekqkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIS 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 658 EKEDSLEAVKARLDSAEDqhlvemeDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDalrKANS 737
Cdd:TIGR04523 339 QLNEQISQLKKELTNSES-------ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE---KLNQ 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 738 EGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKekfasts 817
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK------- 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 818 eeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQL 897
Cdd:TIGR04523 482 --------------QNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 898 TKMNDELR--LKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQaarkheeeKKELEEKLLELEKKMETSYNQC 975
Cdd:TIGR04523 548 NKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE--------KKDLIKEIEEKEKKISSLEKEL 619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 976 QDLKAKYEKASSEtKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADkakaaqtaeDAMQIMEQMTKEK 1055
Cdd:TIGR04523 620 EKAKKENEKLSSI-IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID---------DIIELMKDWLKEL 689
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 23821025 1056 TETlaslEDTKQTNARLQNELDTLKENNLKTVEELnkskellsvenQKMEEFKKEIETL 1114
Cdd:TIGR04523 690 SLH----YKKYITRMIRIKDLPKLEEKYKEIEKEL-----------KKLDEFSKELENI 733
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
689-1253 |
6.71e-10 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 63.62 E-value: 6.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 689 QEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAES 768
Cdd:pfam07111 63 QQAELISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQREL 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 769 SKANSITKElqEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSEL 848
Cdd:pfam07111 143 EEIQRLHQE--QLSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLV 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 849 EKLRENLTDM---EAKFKEKDDREDQLVKAKEKLENDIAEI---MKMSGDNSSQLTKM----NDELRLKERSVEELQLKL 918
Cdd:pfam07111 221 ESLRKYVGEQvppEVHSQTWELERQELLDTMQHLQEDRADLqatVELLQVRVQSLTHMlalqEEELTRKIQPSDSLEPEF 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 919 TKANEN--ASFLQKSIG-EVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQC-QDLKAKYEKASSETKT--- 991
Cdd:pfam07111 301 PKKCRSllNRWREKVFAlMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRAlQDKAAEVEVERMSAKGlqm 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 992 ---KHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA---------------AQTAEDAMQIMEQMTK 1053
Cdd:pfam07111 381 elsRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVAripslsnrlsyavrkVHTIKGLMARKVALAQ 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1054 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE---------------NQKMEEFKKEIETLKQAA 1118
Cdd:pfam07111 461 LRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEvgrareqgeaerqqlSEVAQQLEQELQRAQESL 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1119 AQKSQQLSALQEENVKLAEELGRTRDEVTSHQ---------KLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKsIS 1189
Cdd:pfam07111 541 ASVGQQLEVARQGQQESTEEAASLRQELTQQQeiygqalqeKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQ-IQ 619
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23821025 1190 LTSALLTEKDAELEKLRNEVTVLRGENATAKslhsvVQTLESDKvKLELKVKNLELQLKENKRQ 1253
Cdd:pfam07111 620 HRATQEKERNQELRRLQDEARKEEGQRLARR-----VQELERDK-NLMLATLQQEGLLSRYKQQ 677
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
353-853 |
9.18e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.40 E-value: 9.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 353 QEALKEKQQhIEQLLAERDLeRAEVAKATSHVGEIEQELALARDGHDQHVLEL-EAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:COG4913 242 EALEDAREQ-IELLEPIREL-AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 432 EEKRKVEDLQFRVEEES-ITKGDLEvatvsekSRIMELEKDLALRAQEVAELRRRLES--SKPPGDVDMSLSLLQEISAL 508
Cdd:COG4913 320 ALREELDELEAQIRGNGgDRLEQLE-------REIERLERELEERERRRARLEALLAAlgLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 509 QEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKALhtateklSKENESLRSkldhaNKEN--SDVIALwKSKLETAIAS 586
Cdd:COG4913 393 LEALEEELEALEEALAEAE----AALRDLRRELREL-------EAEIASLER-----RKSNipARLLAL-RDALAEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 587 HQQAM----EELKVSFSKGIGTDSAE----------------FAELKTQIERL----RLDYQH-------------EIES 629
Cdd:COG4913 456 DEAELpfvgELIEVRPEEERWRGAIErvlggfaltllvppehYAAALRWVNRLhlrgRLVYERvrtglpdperprlDPDS 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 630 LQSKQDSERSAHAKEMETMQAKLMKIIK-EKEDSLE----AV-------------------------------KARLDSA 673
Cdd:COG4913 536 LAGKLDFKPHPFRAWLEAELGRRFDYVCvDSPEELRrhprAItragqvkgngtrhekddrrrirsryvlgfdnRAKLAAL 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 674 EDQhLVEMEDTLNKLQEAeikVKELEVLQAKYTEQSEVIGNFTSQ------LSAVKEKLLDLDALRKANSEGKLELETLR 747
Cdd:COG4913 616 EAE-LAELEEELAEAEER---LEALEAELDALQERREALQRLAEYswdeidVASAEREIAELEAELERLDASSDDLAALE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 748 QQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELqtLKEKFASTSEEAVSAQTRm 827
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL--LEERFAAALGDAVERELR- 768
|
570 580
....*....|....*....|....*.
gi 23821025 828 QDTVNKLHQKEEQFNVLSSELEKLRE 853
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMR 794
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
518-1327 |
1.52e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 62.76 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 518 DHQGEMTSLKEHFGAREEAFQKEIKALHT-ATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAM----- 591
Cdd:TIGR00606 87 DVNGEECAVVRSMVCTQKTKKTEFKTLEGvITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSnwpls 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 592 --EELKVSFSKGIgtDSAEFAELKTQIERLRLDYQHEIESLQS-----KQDSERSAHAKEM----ETMQAKLMKIIKEKE 660
Cdd:TIGR00606 167 egKALKQKFDEIF--SATRYIKALETLRQVRQTQGQKVQEHQMelkylKQYKEKACEIRDQitskEAQLESSREIVKSYE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 661 DSLEAVKARLDSAEDQ--HLVEMEDTLNKLQE---------AEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDL 729
Cdd:TIGR00606 245 NELDPLKNRLKEIEHNlsKIMKLDNEIKALKSrkkqmekdnSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDC 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 730 DALRKANSEGKLELETLRQQLEgAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSL-------NQVNQVKETL 802
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELL-VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPfserqikNFHTLVIERQ 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 803 EKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND 882
Cdd:TIGR00606 404 EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKA 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 883 IAEIMKMSgDNSSQLTKMNDELRLKERSVEELQLKLTKANENAsflQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLL 962
Cdd:TIGR00606 484 ERELSKAE-KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEME---QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHS 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 963 ELEKKMETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTE---------DKLKAAQEAN-----------RDLM 1022
Cdd:TIGR00606 560 DELTSLLGYFPNKKQLEDWLHSKSKE-INQTRDRLAKLNKELASLEqnknhinneLESKEEQLSSyedklfdvcgsQDEE 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1023 QDMEELKTQADKAK---AAQTAEDAM--QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELL 1097
Cdd:TIGR00606 639 SDLERLKEEIEKSSkqrAMLAGATAVysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1098 SVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEE--------------ERSVLNNQL 1163
Cdd:TIGR00606 719 KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGtimpeeesakvcltDVTIMERFQ 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1164 LEMKKRESEFRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEVTVLRG----ENATAKSLHSVVQTLESDKVKLEL 1238
Cdd:TIGR00606 799 MELKDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHELDTVVSKIELNRKliqdQQEQIQHLKSKTNELKSEKLQIGT 878
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1239 KVKN---LELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQDLK---MKVEMMSEAALN--GNGE 1310
Cdd:TIGR00606 879 NLQRrqqFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKkaqDKVNDIKEKVKNihGYMK 958
|
890
....*....|....*..
gi 23821025 1311 DLNSYDSDDQEKQSKKK 1327
Cdd:TIGR00606 959 DIENKIQDGKDDYLKQK 975
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
602-1115 |
1.63e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 602 IGTDSAEFAELKTQIErlrldyqhEIESLQSKQDSERSAHAKEMETMQ------AKLMKIIKEKEDSLEAVKARLDSAED 675
Cdd:PRK03918 195 IKEKEKELEEVLREIN--------EISSELPELREELEKLEKEVKELEelkeeiEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 676 QhLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKA-------NSEGKLELETLRQ 748
Cdd:PRK03918 267 R-IEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGieerikeLEEKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 749 QLEGAEKQIKNLEtERNAESSKANSITKELQEKELVLTG-----LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAvsa 823
Cdd:PRK03918 346 KLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGltpekLEKELEELEKAKEEIEEEISKITARIGELKKEI--- 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 824 qTRMQDTVNKLHQKEEQFNVLSSEL---------EKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNS 894
Cdd:PRK03918 422 -KELKKAIEELKKAKGKCPVCGRELteehrkellEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 895 SQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEV-TLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 973
Cdd:PRK03918 501 LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIkSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 974 Q------------CQDLKAKYEKASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 1041
Cdd:PRK03918 581 ElgfesveeleerLKELEPFYNEYLELKDAEKE--LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1042 EDAMQIMEQMTK------EKTETLASLEDTKQTNARLQNELdtlkENNLKTVEELNKSKELLSVENQKMEEFKKEIETLK 1115
Cdd:PRK03918 659 EEYEELREEYLElsrelaGLRAELEELEKRREEIKKTLEKL----KEELEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
404-1334 |
1.78e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 62.76 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEE--ESITKGDLEVATVSE-KSRIMELEKDLALRAQEV- 479
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDlfDKYLEIDDEIIYINKlKLELKEKIKNISDKNEYIk 620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 480 --AELRRRLESSKPPGDVDMSLSLLQEISALQEKlEAIHTDHQGEMTSLkehfgareeaFQKEIKALHTATEKLSKENes 557
Cdd:TIGR01612 621 kaIDLKKIIENNNAYIDELAKISPYQVPEHLKNK-DKIYSTIKSELSKI----------YEDDIDALYNELSSIVKEN-- 687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 558 lrsklDHANKENsdvialwKSKLEtaiashqqameelkvsfskgigtdsaefaELKTQIERlrldyqhEIESLQSKQDSE 637
Cdd:TIGR01612 688 -----AIDNTED-------KAKLD-----------------------------DLKSKIDK-------EYDKIQNMETAT 719
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 638 RSAHAKEMETMQAKLMKIIKEKEDSLEAvkarldsaedqhlvEMEDTLNK-LQEAEIKVKELEVLQAKYTEQSEVIGNFT 716
Cdd:TIGR01612 720 VELHLSNIENKKNELLDIIVEIKKHIHG--------------EINKDLNKiLEDFKNKEKELSNKINDYAKEKDELNKYK 785
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 717 SQLSAVKEKLLDLDALrkansegkleletlrqqlegaeKQIKNLETERNAESSKANSITKELQEKELVLTglqdslnqVN 796
Cdd:TIGR01612 786 SKISEIKNHYNDQINI----------------------DNIKDEDAKQNYDKSKEYIKTISIKEDEIFKI--------IN 835
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 797 QVKetlekelqTLKEKFASTSEEAVSAQTRMQDTVNKLHqkeEQFNVLSSEL--EKLRENLTDMEAKFKEkddredqlvk 874
Cdd:TIGR01612 836 EMK--------FMKDDFLNKVDKFINFENNCKEKIDSEH---EQFAELTNKIkaEISDDKLNDYEKKFND---------- 894
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 875 aKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGevTLKAEQSqqqaarkheeek 954
Cdd:TIGR01612 895 -SKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNID--TIKESNL------------ 959
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 955 keleekllelekkMETSYnqcqdlKAKYEKASSETKTKHEEILQNLQkmLADTEDKlkaaqeaNRDLMQDMEELKTQADK 1034
Cdd:TIGR01612 960 -------------IEKSY------KDKFDNTLIDKINELDKAFKDAS--LNDYEAK-------NNELIKYFNDLKANLGK 1011
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1035 AKAA------QTAEDAMQIMEQMTKEKTETLASLEDTKQTNarLQNELDTLKENNLKTVEELNksKELLSVENQKMEEFK 1108
Cdd:TIGR01612 1012 NKENmlyhqfDEKEKATNDIEQKIEDANKNIPNIEIAIHTS--IYNIIDEIEKEIGKNIELLN--KEILEEAEINITNFN 1087
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1109 KEIETLKQAAAQksqqlSALQEENVKLAEELGRTRDEV-TSHQKLEEERsvlnNQLLEMKKRESEFrkdADEEKASLQKS 1187
Cdd:TIGR01612 1088 EIKEKLKHYNFD-----DFGKEENIKYADEINKIKDDIkNLDQKIDHHI----KALEEIKKKSENY---IDEIKAQINDL 1155
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1188 ISLTSALLTEKDAE--LEKLRNEVTVLRGEN---ATAKSLHSVVQTLESDKVKLElKVKNLELQLKENKRQLSSSsgntd 1262
Cdd:TIGR01612 1156 EDVADKAISNDDPEeiEKKIENIVTKIDKKKniyDEIKKLLNEIAEIEKDKTSLE-EVKGINLSYGKNLGKLFLE----- 1229
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 1263 aQAEEDERAQESQIDFLNSVIVDLQR-KNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQ--SKKKPRLFCDI 1334
Cdd:TIGR01612 1230 -KIDEEKKKSEHMIKAMEAYIEDLDEiKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHiiSKKHDENISDI 1303
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1006-1304 |
2.13e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1006 DTEDKLKAAQEaN----RDLMQD----MEELKTQADKAKAAQTAEDAMQImeqmtKEKTETLASLEDTKQTNARLQNELD 1077
Cdd:COG1196 176 EAERKLEATEE-NlerlEDILGElerqLEPLERQAEKAERYRELKEELKE-----LEAELLLLKLRELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1078 TLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERS 1157
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL---EELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1158 VLNNQLLEMKKRESEFRKDADEEKASLQksisltsALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLE 1237
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELE-------EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23821025 1238 LKVKNLELQLkenkrqlssssgntDAQAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAA 1304
Cdd:COG1196 400 AQLEELEEAE--------------EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
368-920 |
4.77e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 4.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 368 AERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEE 447
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 448 SitKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDmslsllqeiSALQEKLEAIHTDHQGEMTSLK 527
Cdd:PTZ00121 1404 K--KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK---------KKAEEAKKAEEAKKKAEEAKKA 1472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 528 EHFGAREEAFQKeikalhtaTEKLSKENESLRSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFSKGiGTDSA 607
Cdd:PTZ00121 1473 DEAKKKAEEAKK--------ADEAKKKAEEAKKKADEAKKAAEAK----KKADEAKKAEEAKKADEAKKAEEAK-KADEA 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 608 EFAELKTQIERLRldYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEmedTLNK 687
Cdd:PTZ00121 1540 KKAEEKKKADELK--KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE---EAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 688 LQEAEIKVKELEvlqakytEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAE 767
Cdd:PTZ00121 1615 AEEAKIKAEELK-------KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 768 SSKANSITKELQEKELVLTGLQDSLNQVNQVKEtLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSE 847
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE-LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23821025 848 LEKLRENLTDMEAKFKEKDDREDqlvkakEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTK 920
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEED------EKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIK 1833
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
538-1254 |
8.21e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 60.12 E-value: 8.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 538 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSFSKG 601
Cdd:pfam05483 112 RKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 602 IGTDSAEFAELKTQIERLRLDYQHEIeslqsKQDSERSAHAKEmetmqaKLMKIIKEKEDSLEAVKARLDSAEDQhlveM 681
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKL-----KEDHEKIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK----M 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 682 EDTLNKLQEAEIKVKELEvlqAKYTEQSEVIGNFTSQLSAVKEKLLDLD-ALRKANSEGKleleTLRQQLEGAEKQIKNL 760
Cdd:pfam05483 257 KDLTFLLEESRDKANQLE---EKTKLQDENLKELIEKKDHLTKELEDIKmSLQRSMSTQK----ALEEDLQIATKTICQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 761 ETERNAESSKANsitKELQEKELVLTGLQDSLNqvnqvkeTLEKELQTLKEKfastseeavsaqtrmqdtvnkLHQKEEQ 840
Cdd:pfam05483 330 TEEKEAQMEELN---KAKAAHSFVVTEFEATTC-------SLEELLRTEQQR---------------------LEKNEDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 841 FNVLSSELEKLRENLTDMeAKFKEKDDREDQLVKA----KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQL 916
Cdd:pfam05483 379 LKIITMELQKKSSELEEM-TKFKNNKEVELEELKKilaeDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEI 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 917 KLTKANENASFLQKSIGEVTLKAEQSQQqaarKHEEEKKELEEKLLELEKKMETSYNQCQDLKaKYEKASSETKTKHEEI 996
Cdd:pfam05483 458 QLTAIKTSEEHYLKEVEDLKTELEKEKL----KNIELTAHCDKLLLENKELTQEASDMTLELK-KHQEDIINCKKQEERM 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 997 LQNLQKmLADTEDKLKAAQEANRdlmqdmEELKTQADKAKAAQtaedamqimeqmtkektetlasleDTKQTNARLQNEL 1076
Cdd:pfam05483 533 LKQIEN-LEEKEMNLRDELESVR------EEFIQKGDEVKCKL------------------------DKSEENARSIEYE 581
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1077 DTLKENNLKTVE-ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE----VTSHQK 1151
Cdd:pfam05483 582 VLKKEKQMKILEnKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiIDNYQK 661
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1152 LEEERSVLNNQLLEmkkrESEFRKDADEEKASLQKSISL-TSALLTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTL 1229
Cdd:pfam05483 662 EIEDKKISEEKLLE----EVEKAKAIADEAVKLQKEIDKrCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYkNKEQEQ 737
|
730 740
....*....|....*....|....*
gi 23821025 1230 ESDKVKLELKVKNLELQLKENKRQL 1254
Cdd:pfam05483 738 SSAKAALEIELSNIKAELLSLKKQL 762
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
357-1304 |
1.05e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 60.19 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 357 KEKQQHIEQLLAERDLERAEVAKATSHVGE---IEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEE 433
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQEqlqAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 434 KRK----VEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRrlESSKPPGDVDMSLSLLQEISALQ 509
Cdd:pfam01576 98 KKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSK--ERKLLEERISEFTSNLAEEEEKA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 510 EKLEAIHTDHQGEMTSLkehfgarEEAFQKEikalhtatEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQ 589
Cdd:pfam01576 176 KSLSKLKNKHEAMISDL-------EERLKKE--------EKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 590 AMEELKVSFSKgigtdSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMET---MQAKLMKIIKEKEDSLE-- 664
Cdd:pfam01576 241 KEEELQAALAR-----LEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQrrdLGEELEALKTELEDTLDtt 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 665 AVKARLDSAEDQHLVEMEDTLnklqEAEIKVKELEVLQAKyTEQSEVIGNFTSQLSAVKEKLLDLD----ALRKANSEGK 740
Cdd:pfam01576 316 AAQQELRSKREQEVTELKKAL----EEETRSHEAQLQEMR-QKHTQALEELTEQLEQAKRNKANLEkakqALESENAELQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 741 LELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLkekfastSEEA 820
Cdd:pfam01576 391 AELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKL-------SKDV 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 821 VSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKM 900
Cdd:pfam01576 464 SSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEAL 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 901 NDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQS--QQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL 978
Cdd:pfam01576 544 EEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEE 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 979 KAKYEKASSETKTKHEEILQNLQKMLadteDKLKAAQEANRDLMQDMEEL-KTQADKAKAAQTAEDAMQIMEQMTKEKTE 1057
Cdd:pfam01576 624 RDRAEAEAREKETRALSLARALEEAL----EAKEELERTNKQLRAEMEDLvSSKDDVGKNVHELERSKRALEQQVEEMKT 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1058 TLASLED----TKQTNARLQNELDTLK---ENNLKTVEELNKSK-ELLSVENQKME-EFKKEIETLKQAAAQKSQQLSAL 1128
Cdd:pfam01576 700 QLEELEDelqaTEDAKLRLEVNMQALKaqfERDLQARDEQGEEKrRQLVKQVRELEaELEDERKQRAQAVAAKKKLELDL 779
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1129 QEENVKLaEELGRTRDE-VTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLqKSISLTSALLTEKDAELEKLRN 1207
Cdd:pfam01576 780 KELEAQI-DAANKGREEaVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKL-KNLEAELLQLQEDLAASERARR 857
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1208 EVTVLRGENATA-KSLHSVVQTLESDKVKLELKVKNLELQLKENKrqlssssGNTDAQAEEDERAQeSQIDFLNSVIV-- 1284
Cdd:pfam01576 858 QAQQERDELADEiASGASGKSALQDEKRRLEARIAQLEEELEEEQ-------SNTELLNDRLRKST-LQVEQLTTELAae 929
|
970 980 990
....*....|....*....|....*....|..
gi 23821025 1285 ------------DLQRKNQDLKMKVEMMSEAA 1304
Cdd:pfam01576 930 rstsqksesarqQLERQNKELKAKLQEMEGTV 961
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
409-910 |
1.60e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 409 MDQLRTMVEA-ADREKVELLNQLEEEKRKVEDLQFRVEEEsitkgdlevatvseKSRIMELEKDLALRAQEVAELRRRLE 487
Cdd:PRK02224 189 LDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEEQ--------------REQARETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 488 SskppgdvdmslsLLQEISALQEKLEAIHTDhqgemtslkehfgarEEAFQKEIKALHTATEKLSKENESLRSKLDHANK 567
Cdd:PRK02224 255 T------------LEAEIEDLRETIAETERE---------------REELAEEVRDLRERLEELEEERDDLLAEAGLDDA 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 568 EnSDVIALWKSKLETAIASHQQAMEELKVSFSkgigtdsaefaELKTQIERLRldyqHEIESLQSKQDSERSAhAKEMET 647
Cdd:PRK02224 308 D-AEAVEARREELEDRDEELRDRLEECRVAAQ-----------AHNEEAESLR----EDADDLEERAEELREE-AAELES 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 648 MQAKLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLL 727
Cdd:PRK02224 371 ELEEAREAVEDRREEIEELEEEIEELRER----FGDAPVDLGNAE---DFLEELREERDELREREAELEATLRTARERVE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 728 DLDALRKA-----------NSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSItKELQEKElvltglqDSLNQVN 796
Cdd:PRK02224 444 EAEALLEAgkcpecgqpveGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAE-------DRIERLE 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 797 QVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAK 876
Cdd:PRK02224 516 ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR 595
|
490 500 510
....*....|....*....|....*....|....*....
gi 23821025 877 EKLEnDIAEIMKMSG---DNSSQLTKMNDELR--LKERS 910
Cdd:PRK02224 596 TLLA-AIADAEDEIErlrEKREALAELNDERRerLAEKR 633
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
803-1298 |
2.33e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 2.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 803 EKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVK-------- 874
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSdlskinse 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 875 ------AKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSigevtlKAEQSQQQAAR 948
Cdd:TIGR04523 112 ikndkeQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENE------LNLLEKEKLNI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 949 KHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEEL 1028
Cdd:TIGR04523 186 QKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1029 KTQADKAKaaQTAEDAMQIMEQMTKEKTETLASLEDTKQ-----TNARLQNELDTLKENNLKTVEELNKSKELLSVENQK 1103
Cdd:TIGR04523 266 KKQLSEKQ--KELEQNNKKIKELEKQLNQLKSEISDLNNqkeqdWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1104 MEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFR---KDADEE 1180
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI---KNLESQINDLESKIQNQEKLNQQKDeqiKKLQQE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1181 KASLQKSISLTSALLTEKDAELEKLRNEVTVLrgeNATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSssgn 1260
Cdd:TIGR04523 421 KELLEKEIERLKETIIKNNSEIKDLTNQDSVK---ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS---- 493
|
490 500 510
....*....|....*....|....*....|....*...
gi 23821025 1261 tdaqaeederaQESQIDFLNSVIVDLQRKNQDLKMKVE 1298
Cdd:TIGR04523 494 -----------KEKELKKLNEEKKELEEKVKDLTKKIS 520
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
708-926 |
2.60e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 708 QSEVIGNFTSQLSAVKEKLL----DLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKEL 783
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAelekELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 784 VLTGLQDSLNQVNQvkeTLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 863
Cdd:COG4942 98 ELEAQKEELAELLR---ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23821025 864 EKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS 926
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
417-1055 |
3.34e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 3.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 417 EAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvd 496
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE------ 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 497 mslSLLQEISALQEKLEAIhtdhQGEMTSLKEHFGARE---EAFQKEIKALH------TATEKLSKENESLRSKLDHANK 567
Cdd:PRK03918 235 ---ELKEEIEELEKELESL----EGSKRKLEEKIRELEeriEELKKEIEELEekvkelKELKEKAEEYIKLSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 568 ENSDvIALWKSKLETAIASHQQAMEELKvSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAK---- 643
Cdd:PRK03918 308 ELRE-IEKRLSRLEEEINGIEERIKELE-EKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRltgl 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 644 EMETMQAKLMKIIKEK---EDSLEAVKARLDSAEdQHLVEMEDTLNKLQEAEIKVKeleVLQAKYTEQ--SEVIGNFTSQ 718
Cdd:PRK03918 385 TPEKLEKELEELEKAKeeiEEEISKITARIGELK-KEIKELKKAIEELKKAKGKCP---VCGRELTEEhrKELLEEYTAE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 719 LSAVKEklldldalrkansegklELETLRQQLEGAEKQIKNLETERNAES--SKANSITKELQEkelvltgLQDSLNQVN 796
Cdd:PRK03918 461 LKRIEK-----------------ELKEIEEKERKLRKELRELEKVLKKESelIKLKELAEQLKE-------LEEKLKKYN 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 797 QVK-ETLEKELQTLKEKFASTSEEavsaQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDdredqlVKA 875
Cdd:PRK03918 517 LEElEKKAEEYEKLKEKLIKLKGE----IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELG------FES 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 876 KEKLENDIAEIMKMSgDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQ----QQAARKHE 951
Cdd:PRK03918 587 VEELEERLKELEPFY-NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkysEEEYEELR 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 952 EEKKELEEKLLELEKKMETSYNQCQDLKAKYE--KASSETKTKHEEILQNLQKMLADTEDklkaaqeanrdLMQDMEELK 1029
Cdd:PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEklKEELEEREKAKKELEKLEKALERVEE-----------LREKVKKYK 734
|
650 660
....*....|....*....|....*.
gi 23821025 1030 TQADKAKAAQTAEDAMQIMEQMTKEK 1055
Cdd:PRK03918 735 ALLKERALSKVGEIASEIFEELTEGK 760
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1369-1385 |
1.01e-07 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 1.01e-07
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
337-803 |
1.81e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 337 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHD----------QHVLELE 406
Cdd:PRK02224 241 EVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeaveARREELE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 407 AKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRL 486
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 487 ESSkpPGDVDMSLSLLQEisaLQEKLEAIHTDHQGEMTSLKEHFGAREEAFQ-----------KEIK-ALHTAT------ 548
Cdd:PRK02224 401 GDA--PVDLGNAEDFLEE---LREERDELREREAELEATLRTARERVEEAEAlleagkcpecgQPVEgSPHVETieedre 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 549 --EKLSKENESLRSKLDHANKENSDVIALwkSKLETAIASHQQAMEELkvsfSKGIGTDSAEFAELKTQIERLRldyqHE 626
Cdd:PRK02224 476 rvEELEAELEDLEEEVEEVEERLERAEDL--VEAEDRIERLEERREDL----EELIAERRETIEEKRERAEELR----ER 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 627 IESLQSKQDSERSAHAKEMETMQAKLMKiIKEKEDSLEAVKARLDSAEDqhlveMEDTLNKLQEAEikvKELEVLQAKYT 706
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAREE-VAELNSKLAELKERIESLER-----IRTLLAAIADAE---DEIERLREKRE 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 707 EQSEVIGNFTSQLSAVKEKLLDLDALRKAN--SEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEkelv 784
Cdd:PRK02224 617 ALAELNDERRERLAEKRERKRELEAEFDEAriEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE---- 692
|
490
....*....|....*....
gi 23821025 785 LTGLQDSLNQVNQVKETLE 803
Cdd:PRK02224 693 LEELRERREALENRVEALE 711
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
532-1134 |
1.86e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.13 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 532 AREEAFQKEIKALHTATEKLSKENESLR-----SKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDS 606
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPlaahiKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 607 AEFAELKTQIERLRLDYQHEIESLQSKQDSERS-----AHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAED---QHL 678
Cdd:TIGR00618 347 LQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRdlqGQL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 679 VEMEDTlnklQEAEIKVKELEVLQAKYTEQSEVIGNFTSQ-----LSAVKEKLLDLDALRKANSEGKLELETLRQQLEGA 753
Cdd:TIGR00618 427 AHAKKQ----QELQQRYAELCAAAITCTAQCEKLEKIHLQesaqsLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 754 EKQIKNLETERNAESSKANsitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNK 833
Cdd:TIGR00618 503 PCPLCGSCIHPNPARQDID----NPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 834 LHQKEEQFNVLSSELEKLREnLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsgdnSSQLTKMNDELRLKERSVEE 913
Cdd:TIGR00618 579 DNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQHALLRKLQPEQDLQDV-------RLHLQQCSQELALKLTALHA 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 914 LQLKLTKANENASFLQ--------KSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKA 985
Cdd:TIGR00618 651 LQLTLTQERVREHALSirvlpkelLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSL 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 986 SSETKTKHEEILQNLQKMLADTEDKLKAAQEAN-RDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLE- 1063
Cdd:TIGR00618 731 GSDLAAREDALNQSLKELMHQARTVLKARTEAHfNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGq 810
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23821025 1064 --DTKQTNARLQNELDTLKENNLKT-VEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1134
Cdd:TIGR00618 811 eiPSDEDILNLQCETLVQEEEQFLSrLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQI 884
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
729-885 |
2.59e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.39 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 729 LDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKE--TLEKEL 806
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyeALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23821025 807 QTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLtdmEAKFKEKDDREDQLVKAKEKLENDIAE 885
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL---DEELAELEAELEELEAEREELAAKIPP 174
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
409-1024 |
2.80e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 2.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 409 MDQLRTMVEAAD--REKVELLNQLEEEKRKVEDLQfrveeESITKGDLEVATVseksRIMELEKDLALRAQEVAELRRRL 486
Cdd:COG4913 234 FDDLERAHEALEdaREQIELLEPIRELAERYAAAR-----ERLAELEYLRAAL----RLWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 487 ESskppgdvdmslsLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKAlhtateklskenesLRSKLDhan 566
Cdd:COG4913 305 AR------------LEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIER--------------LERELE--- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 567 kensdvialwksKLETAIASHQQAMEELKVSFSkgigTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHakeme 646
Cdd:COG4913 356 ------------ERERRRARLEALLAALGLPLP----ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL----- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 647 tmqAKLMKIIKEKEDSLEAVKARlDSAEDQHLVEMEDTLNklQEAEIKVKEL----EVLQAKYTEQS-----E-VIGNF- 715
Cdd:COG4913 415 ---RDLRRELRELEAEIASLERR-KSNIPARLLALRDALA--EALGLDEAELpfvgELIEVRPEEERwrgaiErVLGGFa 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 716 TSQLsaVKEKLLDlDALRKANSEgKLEletLRQQLEGAEKQIKNLETERnaesSKANSITKELQEKELVLTG-LQDSLNQ 794
Cdd:COG4913 489 LTLL--VPPEHYA-AALRWVNRL-HLR---GRLVYERVRTGLPDPERPR----LDPDSLAGKLDFKPHPFRAwLEAELGR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 795 VNQVK--ETLEkELQtlKEKFASTSEEAVSAQTRM----------------QDTVNKLHQKEEQFNVLSSELEKLRENLT 856
Cdd:COG4913 558 RFDYVcvDSPE-ELR--RHPRAITRAGQVKGNGTRhekddrrrirsryvlgFDNRAKLAALEAELAELEEELAEAEERLE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 857 DMEAKFKEKDDREDQLVKAKEKLENDI------AEImkmsGDNSSQLTKM---NDELRLKERSVEELQLKLTKANENASF 927
Cdd:COG4913 635 ALEAELDALQERREALQRLAEYSWDEIdvasaeREI----AELEAELERLdasSDDLAALEEQLEELEAELEELEEELDE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 928 LQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEkkmetsynqcQDLKAKYEKASSETKTKheEILQNLQKMLADT 1007
Cdd:COG4913 711 LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELR----------ALLEERFAAALGDAVER--ELRENLEERIDAL 778
|
650
....*....|....*..
gi 23821025 1008 EDKLKAAQEANRDLMQD 1024
Cdd:COG4913 779 RARLNRAEEELERAMRA 795
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
352-1254 |
2.94e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.44 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 352 LQEALKEKQQHIEQLLAERDlERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE 431
Cdd:TIGR00606 211 YLKQYKEKACEIRDQITSKE-AQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 432 EekrKVEDLQFRVEEESITKGDLEVATVSEKSR-IMELEKDLALRAQEvaelRRRLESSKPPGDVDMSLSLLQEiSALQE 510
Cdd:TIGR00606 290 L---KMEKVFQGTDEQLNDLYHNHQRTVREKEReLVDCQRELEKLNKE----RRLLNQEKTELLVEQGRLQLQA-DRHQE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 511 KLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTatekLSKENESLRSKLdhankensdvIALWKSKLETAIASHQQA 590
Cdd:TIGR00606 362 HIRARDSLIQSLATRLELDGFERGPFSERQIKNFHT----LVIERQEDEAKT----------AAQLCADLQSKERLKQEQ 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 591 MEELKVSFSKGIGTDSAEFAELKTQIERLRldyqHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARL 670
Cdd:TIGR00606 428 ADEIRDEKKGLGRTIELKKEILEKKQEELK----FVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEV 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 671 DSAE------DQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEgklELE 744
Cdd:TIGR00606 504 KSLQnekadlDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLED---WLH 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 745 TLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQvKETLEKELQTLKEKFASTSEE--AVS 822
Cdd:TIGR00606 581 SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCG-SQDEESDLERLKEEIEKSSKQraMLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 823 AQTRMQDTVNKLHQKEEQF------NVLSSELEkLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSq 896
Cdd:TIGR00606 660 GATAVYSQFITQLTDENQSccpvcqRVFQTEAE-LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS- 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 897 ltkmndELRLKERSVEELQLKLTKANENASflqksigevTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQ 976
Cdd:TIGR00606 738 ------IIDLKEKEIPELRNKLQKVNRDIQ---------RLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELK 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 977 DLKAKYEKASSETktkheeilqnlqkmlaDTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKT 1056
Cdd:TIGR00606 803 DVERKIAQQAAKL----------------QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1057 ETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETlkqaaaQKSQQLSALQEENVKLA 1136
Cdd:TIGR00606 867 NELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ------EKEELISSKETSNKKAQ 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1137 EELGRTRDEVtshqkleeersvlNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGEN 1216
Cdd:TIGR00606 941 DKVNDIKEKV-------------KNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
890 900 910
....*....|....*....|....*....|....*...
gi 23821025 1217 ATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQL 1254
Cdd:TIGR00606 1008 DTQKIQERWLQD-NLTLRKRENELKEVEEELKQHLKEM 1044
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
743-1169 |
3.11e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 3.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 743 LETLRQQLEGA-EKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEE-- 819
Cdd:COG4717 40 LAFIRAMLLERlEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEle 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 820 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiAEIMKMSGDNSSQLTK 899
Cdd:COG4717 120 KLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 900 MNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL- 978
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIa 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 979 ------------------KAKYEKASSETKTKHEEILQNLQKM-----LADTEDKLKAAQEANRDLMQDMEELKTQADKA 1035
Cdd:COG4717 277 gvlflvlgllallflllaREKASLGKEAEELQALPALEELEEEeleelLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1036 KAAQTAEDAMQIMEQMTK-------EKTETLASLEDTKQTNARLQNELDTLKENnlktVEELNKSKELLSVENQKmEEFK 1108
Cdd:COG4717 357 EELEEELQLEELEQEIAAllaeagvEDEEELRAALEQAEEYQELKEELEELEEQ----LEELLGELEELLEALDE-EELE 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 23821025 1109 KEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvTSHQKLEEERSVLNNQLLEMKKR 1169
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
742-948 |
3.37e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 742 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAV 821
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 822 SAQTRMQDTVNKLHQKEEQ----FNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQL 897
Cdd:COG4942 101 AQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 23821025 898 TKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAAR 948
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
733-1291 |
4.73e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 4.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 733 RKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTglqdslnqvnQVKETLEKELQTLKEk 812
Cdd:TIGR00618 165 KKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYH----------ERKQVLEKELKHLRE- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 813 fastseeavsAQTRMQDTVNKLHQKEEQFNvlssELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND-----IAEIM 887
Cdd:TIGR00618 234 ----------ALQQTQQSHAYLTQKREAQE----EQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaapLAAHI 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 888 KMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSigevtlkaEQSQQQAARKHEEekkeleekllelekk 967
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--------RRLLQTLHSQEIH--------------- 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 968 METSYNQCQDLKAKYEKASSET---KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDA 1044
Cdd:TIGR00618 357 IRDAHEVATSIREISCQQHTLTqhiHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1045 MQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENnLKTVEEL-NKSKELLSVENQKMEEFKKEIETLKQAAAQKSQ 1123
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQ-LQTKEQIhLQETRKKAVVLARLLELQEEPCPLCGSCIHPNP 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1124 QLSALQEENVkLAEELGRTRDEVTSHQKLEEErsvLNNQLLEMKKResefRKDADEEKASLQKSISLTSALLTEKDAELE 1203
Cdd:TIGR00618 516 ARQDIDNPGP-LTRRMQRGEQTYAQLETSEED---VYHQLTSERKQ----RASLKEQMQEIQQSFSILTQCDNRSKEDIP 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1204 KLRNEVTVLRGE-NATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSV 1282
Cdd:TIGR00618 588 NLQNITVRLQDLtEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSI 667
|
....*....
gi 23821025 1283 IVDLQRKNQ 1291
Cdd:TIGR00618 668 RVLPKELLA 676
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
665-1208 |
5.29e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 5.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 665 AVKARLDSAEDQ--HLVEMEDTLNKLQEaeiKVKELEVLQAKYTEqsevignftsqLSAVKEKLLDLDALRKAnsegkLE 742
Cdd:COG4913 222 DTFEAADALVEHfdDLERAHEALEDARE---QIELLEPIRELAER-----------YAAARERLAELEYLRAA-----LR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 743 LETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQV-NQVKETLEKELQTLKEKFastsEEAV 821
Cdd:COG4913 283 LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLEREL----EERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 822 SAQTRMQDTVNKLHQK----EEQFNVLSSELEKLRENLTDMEAKFKEK----DDREDQLVKAKEKLENDIAEIMKMSGDN 893
Cdd:COG4913 359 RRRARLEALLAALGLPlpasAEEFAALRAEAAALLEALEEELEALEEAlaeaEAALRDLRRELRELEAEIASLERRKSNI 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 894 SSQLTKM----NDELRLKERSV----EELQLKLTKAN-ENA----------SFL--QKSIGEVTLKAEQSQQ------QA 946
Cdd:COG4913 439 PARLLALrdalAEALGLDEAELpfvgELIEVRPEEERwRGAiervlggfalTLLvpPEHYAAALRWVNRLHLrgrlvyER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 947 ARKHEEEKKELEEKLLELEKKMETSYNQCQD-LKAKYEKASSETKTKHEEILQNLQKML--------------------- 1004
Cdd:COG4913 519 VRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVCVDSPEELRRHPRAItragqvkgngtrhekddrrri 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1005 -------ADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELD 1077
Cdd:COG4913 599 rsryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1078 TLKENNlKTVEELnkskellsveNQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERS 1157
Cdd:COG4913 679 RLDASS-DDLAAL----------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL---EAAEDLAR 744
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 23821025 1158 VLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNE 1208
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
402-1082 |
6.28e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.07 E-value: 6.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 402 VLELEAKMDQLRTMVEA--ADREKVELLNQLEEEK--RKVEDLQF------------RVEEESITKGDLEVATVSEKSRI 465
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAilEDDGVVPPKSRLNRQQveHWIRDIQAiagimkirpeftKLQQEFNTLESAELRLSHLHFGY 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 466 MELEKDLALRAQEVAELRRRLESSKPPGDVDMSLS---LLQEISAL-------QEKLEAIHTDH----QGEMTSLKEH-- 529
Cdd:pfam12128 268 KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdeLNGELSAAdaavakdRSELEALEDQHgaflDADIETAAADqe 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 530 ----FGAREEAFQKEIKALHTATEKLSKENESLRSKLDhanKENSDVIALWKSKLE----------TAIASHQQAME-EL 594
Cdd:pfam12128 348 qlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDKLAkireardrqlAVAEDDLQALEsEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 595 KVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAhaKEMETMQAKLMKIIKEKEDsLEAVKARLDSAE 674
Cdd:pfam12128 425 REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFD--ERIERAREEQEAANAEVER-LQSELRQARKRR 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 675 DQHLVemedtlnKLQEAEIKVKELEvlqakyteqsevignftSQLSAVKEKLLDldalrkanSEGKLeLETLRQQLEGAE 754
Cdd:pfam12128 502 DQASE-------ALRQASRRLEERQ-----------------SALDELELQLFP--------QAGTL-LHFLRKEAPDWE 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 755 KQI-KNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVnQVKETLEKElQTLKEKFASTSEEAVSAQTRMQdtvnk 833
Cdd:pfam12128 549 QSIgKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRI-DVPEWAASE-EELRERLDKAEEALQSAREKQA----- 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 834 lhQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE----KLENDIAEIMKMSGDNSSQLTKMNDELRLKER 909
Cdd:pfam12128 622 --AAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQsekdKKNKALAERKDSANERLNSLEAQLKQLDKKHQ 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 910 SVEELQ--LKLTKANENASFLQKSIG----------------EVTLKAEQSQQQAARKHEEEKK----ELEEKLLELEKK 967
Cdd:pfam12128 700 AWLEEQkeQKREARTEKQAYWQVVEGaldaqlallkaaiaarRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIRT 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 968 METSYNQCQDLKAK------------------YEKASSETKTKHEEILQNLQKMLADTEDKLKAAQ---EANRDLMQDME 1026
Cdd:pfam12128 780 LERKIERIAVRRQEvlryfdwyqetwlqrrprLATQLSNIERAISELQQQLARLIADTKLRRAKLEmerKASEKQQVRLS 859
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 1027 ELKTQAD--KAKAAQTAEDAMQimEQMTKEKTETLASLEDTKQTNARLQNELDTLKEN 1082
Cdd:pfam12128 860 ENLRGLRceMSKLATLKEDANS--EQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEH 915
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
662-947 |
6.70e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 54.15 E-value: 6.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 662 SLEAVKARLDSAEDQhlvemedtlnKLQEAEIK--VKELEvlqakyteqsevignftsqlsavkEKLLDLDALRKAnseg 739
Cdd:PRK11281 37 TEADVQAQLDALNKQ----------KLLEAEDKlvQQDLE------------------------QTLALLDKIDRQ---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 740 KLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKeLVLTGLQDSLNQVNQvketlekELQTLKEKFASTSEE 819
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLST-LSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 820 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimKMSGDNSSQLTk 899
Cdd:PRK11281 151 LVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQ-------RKSLEGNTQLQ- 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 23821025 900 mndELRLKERsvEELQLKLTKANENASFLQKSIGEVTLkaEQSQQQAA 947
Cdd:PRK11281 223 ---DLLQKQR--DYLTARIQRLEHQLQLLQEAINSKRL--TLSEKTVQ 263
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
788-1043 |
1.03e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 788 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 867
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 868 REDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMndeLRLKERSVEELQLKLTKanenasfLQKSIGEVTLKAEQSQQQAA 947
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAEE-------LRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 948 RKheeekkeleekllelekkmETSYNQCQDLKAKYEKAssetKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEE 1027
Cdd:COG4942 175 EL-------------------EALLAELEEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|....*.
gi 23821025 1028 LKTQADKAKAAQTAED 1043
Cdd:COG4942 232 LEAEAAAAAERTPAAG 247
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
879-1267 |
1.39e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 879 LENDIAEIMKMSGdnsSQLTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELE 958
Cdd:TIGR02169 140 LQGDVTDFISMSP---VERRKIIDEIA----GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 959 ekllelekkmetsYNQCQDLKAKYE-KASSETKTKHEEILQNLQKMLADTE---DKLKAAQEANRDLMQDMEELKTQADK 1034
Cdd:TIGR02169 213 -------------YQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEeelEKLTEEISELEKRLEEIEQLLEELNK 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1035 AKAAQTAEDAMQIMEQMTkektETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL 1114
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIG----ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1115 KQAAAQKSQQLSAL----QEENVKLAEELGRTRDEVTSHQKLEEERSVLN---NQLLEMKKRESEFRKDADEEKASLQKS 1187
Cdd:TIGR02169 356 TEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLKREINELKrelDRLQEELQRLSEELADLNAAIAGIEAK 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1188 ISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEE 1267
Cdd:TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-568 |
4.59e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 431 EEEKRKVEDL---QFRVEEESITKGDLEVATVSEKSRIMELEKDLA-LRAQEVAELRRRLESSKppgdvdmslSLLQEIS 506
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLApARREQAEELRADLAELA---------ALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 507 ALQEKLEAIHTDHQGEMTSLKEHFGAREEA---FQKEIKALHTATEKLSKENESLRSKLDHANKE 568
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLlarLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
355-528 |
8.18e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 8.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 355 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 421 REKVELLNQLEEEKRKVEDLQFRVEEESitkgdlevatvSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdmsls 500
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEAR-----------SEERREIRKDREISRLDREIERLERELEEER---------- 485
|
170 180 190
....*....|....*....|....*....|..
gi 23821025 501 llQEISALQEKLE----AIHTDHQGEMTSLKE 528
Cdd:COG2433 486 --ERIEELKRKLErlkeLWKLEHSGELVPVKV 515
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
697-1252 |
9.69e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.29 E-value: 9.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 697 ELEVLQAKYTEQSEVIGNFTSQLSavkekllDLDALRKANSEGKLELETLRQQLEGAE-------KQIKNLETERNAESS 769
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEIS-------NIDYLEEKLKSSNLELENIKKQIADDEkshsitlKEIERLSIEYNNAMD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 770 KANSITKELQEkelvLTGLQDSLNQVNQVKETLEKELQTLKEKFAS-----------TSEEAVSAQTRMQDTVNKLHQKE 838
Cdd:PRK01156 233 DYNNLKSALNE----LSSLEDMKNRYESEIKTAESDLSMELEKNNYykeleerhmkiINDPVYKNRNYINDYFKYKNDIE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 839 EQFNVLS---SELEKLREN---LTDMEA---KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKER 909
Cdd:PRK01156 309 NKKQILSnidAEINKYHAIikkLSVLQKdynDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIER 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 910 SVEELQLKLTKANENASFLQKSIGEVTLKAEQ-SQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSE 988
Cdd:PRK01156 389 MSAFISEILKIQEIDPDAIKKELNEINVKLQDiSSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSN 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 989 TKTKH-EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELktQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQ 1067
Cdd:PRK01156 469 HIINHyNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL--ESEEINKSINEYNKIESARADLEDIKIKINELKDKHD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1068 TNARLQNELDTLKENNL--KTVEELNKSKELLSVENQKMEEFKKEIET-LKQAAAQKSQQLSALQEENVKLAEELGRTRD 1144
Cdd:PRK01156 547 KYEEIKNRYKSLKLEDLdsKRTSWLNALAVISLIDIETNRSRSNEIKKqLNDLESRLQEIEIGFPDDKSYIDKSIREIEN 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1145 EVTSHQKLEEERSVLNNQLLEMKKRESEFRKDAdEEKASLQKSISLTSALLTEKDAELEKLRNEvtvLRGENATAKSLHS 1224
Cdd:PRK01156 627 EANNLNNKYNEIQENKILIEKLRGKIDNYKKQI-AEIDSIIPDLKEITSRINDIEDNLKKSRKA---LDDAKANRARLES 702
|
570 580
....*....|....*....|....*...
gi 23821025 1225 VVQTLESDKVKLELKVKNLELQLKENKR 1252
Cdd:PRK01156 703 TIEILRTRINELSDRINDINETLESMKK 730
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
800-1230 |
9.93e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 9.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 800 ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 879
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 880 ENDIaeimkmsgdnssQLTKMNDELRLKERSVEELQLKLTKANEnasfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 959
Cdd:COG4717 129 PLYQ------------ELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 960 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKML-ADTEDKLKAAQEANRD-------LMQDMEELKTQ 1031
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEaAALEERLKEARLLLLIaaallalLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1032 ADKAKAAQTAEDAMQIMEQMT-KEKTETLASLEDTKQTNAR-------LQNELDTLKENNLKTVEELNKSKELLSVENQK 1103
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLaREKASLGKEAEELQALPALeeleeeeLEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1104 MEEFKKEIETLKQAAAQKSQQlSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEkaS 1183
Cdd:COG4717 353 LREAEELEEELQLEELEQEIA-ALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--E 429
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 23821025 1184 LQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLE 1230
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ 476
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
976-1298 |
1.34e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 976 QDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA-----AQTAEDAMQIMEQ 1050
Cdd:PRK02224 240 DEVLEEHEERREELETLEAEI-EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAeagldDADAEAVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1051 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVE--------------ELNKSKELLSVENQKMEEFKKEIETLKQ 1116
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeelreeaaelesELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1117 AAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVL--NNQLLEMKK--------RESEFRKDADEEKASLQ 1185
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEaTLRTARERVeeAEALLEAGKcpecgqpvEGSPHVETIEEDRERVE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1186 ksisltsalltEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQ---LKENKRQLSSSSGNTD 1262
Cdd:PRK02224 479 -----------ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERretIEEKRERAEELRERAA 547
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 23821025 1263 A------QAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKVE 1298
Cdd:PRK02224 548 EleaeaeEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-594 |
1.77e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 414
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 415 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLEsskppgd 494
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLE------- 772
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 495 vdmslsllQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSK-ENESL---RSKLDHANKENS 570
Cdd:COG4913 773 --------ERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRlEEDGLpeyEERFKELLNENS 844
|
250 260
....*....|....*....|....*
gi 23821025 571 DV-IALWKSKLETAIASHQQAMEEL 594
Cdd:COG4913 845 IEfVADLLSKLRRAIREIKERIDPL 869
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
633-1095 |
1.81e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.44 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 633 KQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLD------SAEDQHLVEMEDTLN-KLQEAEIKVKELEVLQAKY 705
Cdd:pfam10174 275 KQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLEtltnqnSDCKQHIEVLKESLTaKEQRAAILQTEVDALRLRL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 706 TEQSEVIGNFTSQLSAVKEKLLDLDAlrkansegklELETLRQQLEGAEKQIKNLEternaesSKANSITKELQEKELVL 785
Cdd:pfam10174 355 EEKESFLNKKTKQLQDLTEEKSTLAG----------EIRDLKDMLDVKERKINVLQ-------KKIENLQEQLRDKDKQL 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 786 TGLQDSLNQVNQVKETLEKELQTLkekfastsEEAVSAQTRMQDTVNKLHQKEEQfnVLSSELEKLRENLTDMEAKF--- 862
Cdd:pfam10174 418 AGLKERVKSLQTDSSNTDTALTTL--------EEALSEKERIIERLKEQREREDR--ERLEELESLKKENKDLKEKVsal 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 863 -KEKDDREDQLVKAKEKLENDIAEIMKmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIgEVTLKAEQ 941
Cdd:pfam10174 488 qPELTEKESSLIDLKEHASSLASSGLK----KDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNP-EINDRIRL 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 942 SQQQAARKHEEEKKELEEKLLELEKKMETSyNQCQDLKAKYEKASSETKTKH-EEILQNLQKMLADTEDKLKAAQEanrd 1020
Cdd:pfam10174 563 LEQEVARYKEESGKAQAEVERLLGILREVE-NEKNDKDKKIAELESLTLRQMkEQNKKVANIKHGQQEMKKKGAQL---- 637
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 1021 lMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKE 1095
Cdd:pfam10174 638 -LEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQ 711
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
543-1243 |
2.28e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 49.28 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 543 ALHTATEKLSKENESLRSKldHANKENSDVIalwkSKLETAIASHQQAMEELKV-SFSKGIGTDSAEFAELKTQIerlrl 621
Cdd:TIGR01612 1048 AIHTSIYNIIDEIEKEIGK--NIELLNKEIL----EEAEINITNFNEIKEKLKHyNFDDFGKEENIKYADEINKI----- 1116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 622 dyQHEIESLQSKQDSersaHAKEMEtmqaklmKIIKEKEDSLEAVKARLDSAEDqhlveMEDTLNKLQEAEIKVKELEVL 701
Cdd:TIGR01612 1117 --KDDIKNLDQKIDH----HIKALE-------EIKKKSENYIDEIKAQINDLED-----VADKAISNDDPEEIEKKIENI 1178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 702 QAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRK--------ANSEGKLELETLRQQLEGAEKQIKNLEternAESSKANS 773
Cdd:TIGR01612 1179 VTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEvkginlsyGKNLGKLFLEKIDEEKKKSEHMIKAME----AYIEDLDE 1254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 774 ITKELQEKELVLTGLQDslnqvnqvketLEKELQTLkekfastseeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLRE 853
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMD-----------IKAEMETF----------------------NISHDDDKDHHIISKKHDENIS 1301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 854 NLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGD---------NSSQLTKMN------DELRLKERSVEELQLKL 918
Cdd:TIGR01612 1302 DIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDinlylneiaNIYNILKLNkikkiiDEVKEYTKEIEENNKNI 1381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 919 TKANENASFLQKSIGE-VTLKAEQSQQQAA--RKHEEEKKELEEKLLELEKKMETSYNqcqdlkaKYEKASSETKTKHEE 995
Cdd:TIGR01612 1382 KDELDKSEKLIKKIKDdINLEECKSKIESTldDKDIDECIKKIKELKNHILSEESNID-------TYFKNADENNENVLL 1454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 996 ILQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKTQADKAKAAQTAEDA--------MQIMEQMTKEKTETLasledTK 1066
Cdd:TIGR01612 1455 LFKNIEMADNKSQHILKIKKDnATNDHDFNINELKEHIDKSKGCKDEADKnakaieknKELFEQYKKDVTELL-----NK 1529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1067 QTNARLQNELDTLKENNLKTVEELNKSKELLSVE----NQKMEEFKKEIETLKQAAAQKSQ--------QLSALQEEN-- 1132
Cdd:TIGR01612 1530 YSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEaeksEQKIKEIKKEKFRIEDDAAKNDKsnkaaidiQLSLENFENkf 1609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1133 VKLAEELGRTRDEVTSHQKLEEERSVL--NNQLLEMKKRESEFR--KDADEEKASLQKSISLTSALLTEKDAELEKLRN- 1207
Cdd:TIGR01612 1610 LKISDIKKKINDCLKETESIEKKISSFsiDSQDTELKENGDNLNslQEFLESLKDQKKNIEDKKKELDELDSEIEKIEId 1689
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 23821025 1208 --------EVTVLRGENATAKSLHsvvQTLESDKVKLELKVKNL 1243
Cdd:TIGR01612 1690 vdqhkknyEIGIIEKIKEIAIANK---EEIESIKELIEPTIENL 1730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
997-1214 |
2.32e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 997 LQNLQKMLADTEDKLKAAQEAnRDLMQDMEELKTQADKA---KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ 1073
Cdd:COG4913 237 LERAHEALEDAREQIELLEPI-RELAERYAAARERLAELeylRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1074 NELDTLKEnnlkTVEELnkSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEenvkLAEELGrtrdevtshQKLE 1153
Cdd:COG4913 316 ARLDALRE----ELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEA----LLAALG---------LPLP 376
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 23821025 1154 EERSvlnnQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1214
Cdd:COG4913 377 ASAE----EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
386-837 |
2.83e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 386 EIEQELALARDGHDQHvLELEAKMDQLRTMVEAADREKVELLNQLEEeKRKVEDLQFRVEEESITKGDLEvatvSEKSRI 465
Cdd:COG4717 75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAELEELREELEK-LEKLLQLLPLYQELEALEAELA----ELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 466 MELEKdlalRAQEVAELRRRLESskppgdvdmslsLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALH 545
Cdd:COG4717 149 EELEE----RLEELRELEEELEE------------LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 546 TATEKLSKENESLRSKLD-------HANKENSDVIALWKSKLETAIASHQQAMEELKVSFSK---------GIGTDSAEF 609
Cdd:COG4717 213 EELEEAQEELEELEEELEqleneleAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 610 AELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQH----LVEMEDTL 685
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeelqLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 686 NKLQeAEIKVKELEVLQAKYTEQSEVIgNFTSQLSAVKEKLLDLDALRKANSEgKLELETLRQQLEGAEKQIKNLETERN 765
Cdd:COG4717 373 AALL-AEAGVEDEEELRAALEQAEEYQ-ELKEELEELEEQLEELLGELEELLE-ALDEEELEEELEELEEELEELEEELE 449
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 23821025 766 AESSKANSITKELQEKElvltgLQDSLNQVNQVKETLEKELQTLKEKFAStseeAVSAQTRMQDTVNKLHQK 837
Cdd:COG4717 450 ELREELAELEAELEQLE-----EDGELAELLQELEELKAELRELAEEWAA----LKLALELLEEAREEYREE 512
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1090-1293 |
2.98e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1090 LNKSKELLSVENQKMEEF-KKEIETLKQAAAQKSQQLSALQEEN--VKLAEELGRTRDEVTShqkLEEERSVLNNQLLEM 1166
Cdd:COG3206 162 LEQNLELRREEARKALEFlEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSE---LESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1167 KKRESEFRKDADEEKASLqkSISLTSALLTEKDAELEKLRNEVTVLRgenATAKSLHSVVQTLESdkvklelKVKNLELQ 1246
Cdd:COG3206 239 EARLAALRAQLGSGPDAL--PELLQSPVIQQLRAQLAELEAELAELS---ARYTPNHPDVIALRA-------QIAALRAQ 306
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 23821025 1247 LKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQDL 1293
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
748-1172 |
3.23e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.54 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 748 QQLEGAEKQIKNLETErNAESSKANSITKELQEKELVLT-GLQDSLNQVNQVKETLEKELQTLKEKfaSTSEEAVSAQTR 826
Cdd:COG5022 875 QRVELAERQLQELKID-VKSISSLKLVNLELESEIIELKkSLSSDLIENLEFKTELIARLKKLLNN--IDLEEGPSIEYV 951
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 827 MQDTVNKLHQKEeqfnvlsSELEKLRENLTDMeakFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSqLTKMNDELRL 906
Cdd:COG5022 952 KLPELNKLHEVE-------SKLKETSEEYEDL---LKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKE 1020
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 907 KERSVEELQLKLTKANENASFL------QKSIGEVTLKAEQSQQQAarKHEEEKKELEEKLLELEKKMETSYNQCQDLKA 980
Cdd:COG5022 1021 LPVEVAELQSASKIISSESTELsilkplQKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQLESTENLLKTINV 1098
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 981 KYEKASSETKTKHEEILQNLqkmladtedklkAAQEANRDLMQDMEELKTQadkakAAQTAEDAMQIME--QMTKEKTET 1058
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFI------------VAQMIKLNLLQEISKFLSQ-----LVNTLEPVFQKLSvlQLELDGLFW 1161
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1059 LASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL-KQAAAQKSQQLSALQEENVKLAE 1137
Cdd:COG5022 1162 EANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWpRGDKLKKLISEGWVPTEYSTSLK 1241
|
410 420 430
....*....|....*....|....*....|....*....
gi 23821025 1138 ELGRTRDEVTSHQKL--EEERSVLN--NQLLEMKKRESE 1172
Cdd:COG5022 1242 GFNNLNKKFDTPASMsnEKLLSLLNsiDNLLSSYKLEEE 1280
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
867-1081 |
3.84e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 867 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLK-AEQSQQQ 945
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 946 AARKHEEEKKELEEKLLELEKKMETSYNQCQDLKA----KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL 1021
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1022 MQDMEELKTQADKAKAAQTaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE 1081
Cdd:COG4942 180 LAELEEERAALEALKAERQ-----KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1035-1271 |
4.42e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1035 AKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKKEIETL 1114
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER-------RIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1115 KQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSAL 1194
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 1195 LTEKDAELEKLRNEVTVLRGENATAKSLH-SVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERA 1271
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
743-1330 |
5.73e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 5.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 743 LETLRQQLEGAEKQIKNLETernAESSKANSITKELQEKELVLTGLQDslnQVNQVKETLEKELQTLKEKFASTSE--EA 820
Cdd:pfam12128 253 LESAELRLSHLHFGYKSDET---LIASRQEERQETSAELNQLLRTLDD---QWKEKRDELNGELSAADAAVAKDRSelEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 821 VSAQTR--MQDTVNKLHQKEEQFNVLSSELEKLRENLT-------DMEAKF-----KEKDDREDQLVKAKEKLENDIAEI 886
Cdd:pfam12128 327 LEDQHGafLDADIETAAADQEQLPSWQSELENLEERLKaltgkhqDVTAKYnrrrsKIKEQNNRDIAGIKDKLAKIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 887 MKMSGDNSSQLTKMNDELRlkersvEELQLKLTKANENASFLQKSIGEvtLKAEQSQQQAarkheeekkeleekLLELEK 966
Cdd:pfam12128 407 DRQLAVAEDDLQALESELR------EQLEAGKLEFNEEEYRLKSRLGE--LKLRLNQATA--------------TPELLL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 967 KMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAkaAQTAEDAMQ 1046
Cdd:pfam12128 465 QLENFDERIERAREEQEAANAEVERLQSELRQ-ARKRRDQASEALRQASRRLEERQSALDELELQLFPQ--AGTLLHFLR 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1047 IMEQMTKEKTETLASLEDTKQTNarLQNELDTLKENNLKTVEELNkskelLSVENQKMEEFKKEIETLKQAAAQKSQQLS 1126
Cdd:pfam12128 542 KEAPDWEQSIGKVISPELLHRTD--LDPEVWDGSVGGELNLYGVK-----LDLKRIDVPEWAASEEELRERLDKAEEALQ 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1127 ALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKL 1205
Cdd:pfam12128 615 SAREKQAAAEEQLVQANGELEKASReETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1206 RNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKnlELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVD 1285
Cdd:pfam12128 695 DKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQ--LALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAK 772
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 23821025 1286 LQRKNQDLKMKVEMMSeaalnGNGEDLNSYDSDDQEKQSKKKPRL 1330
Cdd:pfam12128 773 LKREIRTLERKIERIA-----VRRQEVLRYFDWYQETWLQRRPRL 812
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
644-816 |
6.35e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 6.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 644 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNftsqlsaVK 723
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTEL----EDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-------NK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 724 EklldLDALRKansegklELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLE 803
Cdd:COG1579 90 E----YEALQK-------EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
170
....*....|...
gi 23821025 804 KELQTLKEKFAST 816
Cdd:COG1579 159 EELEAEREELAAK 171
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
720-1274 |
6.36e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 6.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 720 SAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNA--------------ESSKANSITKELQEKELVL 785
Cdd:pfam05483 106 NKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNAtrhlcnllketcarSAEKTKKYEYEREETRQVY 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 786 TGLQDSLNQVNQVKETLEKELQTLK-EKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKE 864
Cdd:pfam05483 186 MDLNNNIEKMILAFEELRVQAENARlEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEE 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 865 KDDREDQLvKAKEKLENdiaEIMKMSGDNSSQLTKMNDELRLK-ERSV-------EELQLKlTKANENASFLQKSIGEVT 936
Cdd:pfam05483 266 SRDKANQL-EEKTKLQD---ENLKELIEKKDHLTKELEDIKMSlQRSMstqkaleEDLQIA-TKTICQLTEEKEAQMEEL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 937 LKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSET------KTKHEEILQNLQKMLADTEDK 1010
Cdd:pfam05483 341 NKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELeemtkfKNNKEVELEELKKILAEDEKL 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1011 LkaaqEANRDLMQDMEELK-TQADKAKAAQTAEDAMQIME-QMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVE 1088
Cdd:pfam05483 421 L----DEKKQFEKIAEELKgKEQELIFLLQAREKEIHDLEiQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDK 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1089 ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKS---QQLSALQEENVKLAEELGRTRDEVTshQKLEEERSVLNNQLLE 1165
Cdd:pfam05483 497 LLLENKELTQEASDMTLELKKHQEDIINCKKQEErmlKQIENLEEKEMNLRDELESVREEFI--QKGDEVKCKLDKSEEN 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1166 MKKRESEFRKDADEEKASLQKSISLTSALlTEKDAELEKLRNEVTVLRGE-NATAKSLHSvvqtlesdkvkLELKVKNLE 1244
Cdd:pfam05483 575 ARSIEYEVLKKEKQMKILENKCNNLKKQI-ENKNKNIEELHQENKALKKKgSAENKQLNA-----------YEIKVNKLE 642
|
570 580 590
....*....|....*....|....*....|
gi 23821025 1245 LQLKENKRQLSSSSGNTDAQAEEDERAQES 1274
Cdd:pfam05483 643 LELASAKQKFEEIIDNYQKEIEDKKISEEK 672
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
464-909 |
6.69e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 6.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 464 RIMELEKDLALRAQEVAELRRRLesskppgdVDMSlSLLQEISALQEKLEAihtDHQgemtSLKEHFGAREEAFQkeika 543
Cdd:COG3096 286 RALELRRELFGARRQLAEEQYRL--------VEMA-RELEELSARESDLEQ---DYQ----AASDHLNLVQTALR----- 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 544 lhtATEKLSK---ENESLRSKLDhankENSDVIALWKSKLETAIASHQQAMEELKvsfskgigtdsaefaELKTQIErlr 620
Cdd:COG3096 345 ---QQEKIERyqeDLEELTERLE----EQEEVVEEAAEQLAEAEARLEAAEEEVD---------------SLKSQLA--- 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 621 lDYQHEIESLQSKQDSERSA-HAKEMETMQAKLMKI-IKEKEDSLEAVKARLDSAeDQHLVEMEDTLNKLQEAEI---KV 695
Cdd:COG3096 400 -DYQQALDVQQTRAIQYQQAvQALEKARALCGLPDLtPENAEDYLAAFRAKEQQA-TEEVLELEQKLSVADAARRqfeKA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 696 KELEVLQAKYTEQSEVIGNFTSQLSAVKEklLDLDALRKANSEGKL-ELETLRQQLEGAEKQIKNLETERNAESSKANSI 774
Cdd:COG3096 478 YELVCKIAGEVERSQAWQTARELLRRYRS--QQALAQRLQQLRAQLaELEQRLRQQQNAERLLEEFCQRIGQQLDAAEEL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 775 TKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEA---VSAQTRMQDTVNKLHQKEEQFNVLSSELEKL 851
Cdd:COG3096 556 EELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApawLAAQDALERLREQSGEALADSQEVTAAMQQL 635
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 852 RENLTDMEAKfkekddrEDQLVKAKEKLENDIAEIMKMSGDNSSQLtkmndeLRLKER 909
Cdd:COG3096 636 LEREREATVE-------RDELAARKQALESQIERLSQPGGAEDPRL------LALAER 680
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
425-1302 |
7.36e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.48 E-value: 7.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 425 ELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDV---DMSLSL 501
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEilhELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 502 LQEisalQEKLEAIHTDH---QGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDvialwKS 578
Cdd:pfam01576 85 EEE----EERSQQLQNEKkkmQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKE-----RK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 579 KLETAIA--SHQQAMEELKV-SFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKLMKI 655
Cdd:pfam01576 156 LLEERISefTSNLAEEEEKAkSLSKLKNKHEAMISDLEERLKKEEKGRQ-ELEKAKRKLEGESTDLQEQIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 656 ---IKEKEDSLEAVKARLDSAEDQHlvemEDTLNKLQEAEIKVKELE-------VLQAKYTEQSEVIGnftSQLSAVKEK 725
Cdd:pfam01576 235 raqLAKKEEELQAALARLEEETAQK----NNALKKIRELEAQISELQedleserAARNKAEKQRRDLG---EELEALKTE 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 726 LLDLDALRKANSEGKLELETLRQQLEGA-EKQIKNLETERNAESSKANSITKELQEKelvltglqdsLNQVNQVKETLEK 804
Cdd:pfam01576 308 LEDTLDTTAAQQELRSKREQEVTELKKAlEEETRSHEAQLQEMRQKHTQALEELTEQ----------LEQAKRNKANLEK 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 805 ELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ---FNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE---- 877
Cdd:pfam01576 378 AKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQlqeLQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEgkni 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 878 KLENDIAEImkmsgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEvtlkaEQSQQQAARKHEEEKKEL 957
Cdd:pfam01576 458 KLSKDVSSL-------ESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE-----EEEAKRNVERQLSTLQAQ 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 958 EEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKM------LADTEDKLKAAQEANRDLMQDMEELKTQ 1031
Cdd:pfam01576 526 LSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLektknrLQQELDDLLVDLDHQRQLVSNLEKKQKK 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1032 AD------KAKAAQTAEDAMQIMEQ----------MTKEKTETLASLEDTKQTNARLQNELDTL---KENNLKTVEELNK 1092
Cdd:pfam01576 606 FDqmlaeeKAISARYAEERDRAEAEareketralsLARALEEALEAKEELERTNKQLRAEMEDLvssKDDVGKNVHELER 685
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1093 SKELLSVENQKMEEFKKEIETLKQAAAQKS-------QQLSALQEENVKLAEELGRTRDEVTSHQ------KLEEERSVL 1159
Cdd:pfam01576 686 SKRALEQQVEEMKTQLEELEDELQATEDAKlrlevnmQALKAQFERDLQARDEQGEEKRRQLVKQvreleaELEDERKQR 765
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1160 NNQLLEMKKRESEFRK------DADEEKASLQKSISLTSALLTEKDAELEKL---RNEVTVLRGEN-ATAKSLHSVVQTL 1229
Cdd:pfam01576 766 AQAVAAKKKLELDLKEleaqidAANKGREEAVKQLKKLQAQMKDLQRELEEArasRDEILAQSKESeKKLKNLEAELLQL 845
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23821025 1230 ESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERaqesqidfLNSVIVDLQRKNQDLKMKVEMMSE 1302
Cdd:pfam01576 846 QEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRR--------LEARIAQLEEELEEEQSNTELLND 910
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1081-1327 |
7.60e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 47.26 E-value: 7.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1081 ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA-LQEENVKLAEELGRTRD---EVTSHQKLEEER 1156
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKrLNENANNLIKQFENTKEkiaEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1157 SVLNNQLLEMKKrESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKS---LHSVVQTLESDK 1233
Cdd:COG5185 312 ESLEEQLAAAEA-EQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSseeLDSFKDTIESTK 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1234 VKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERaqesQIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNGNGEDL 1312
Cdd:COG5185 391 ESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQR----QIEQATSSNEEVSKLLNELiSELNKVMREADEESQSRLE 466
|
250
....*....|....*
gi 23821025 1313 NSYDSDDQEKQSKKK 1327
Cdd:COG5185 467 EAYDEINRSVRSKKE 481
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1070-1215 |
7.76e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 7.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1070 ARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD--EVT 1147
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 23821025 1148 SHQK----LEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1215
Cdd:COG1579 93 ALQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
976-1125 |
7.83e-05 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 46.86 E-value: 7.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 976 QDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK--LKAAQEANRDLMQDMEELKTQADKAKAAQTAEdamqiMEQMTK 1053
Cdd:COG4487 50 ELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKkaLAVAEEKEKELAALQEALAEKDAKLAELQAKE-----LELLKK 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 23821025 1054 EKTETLASLEDTKQTNARLQNELDTLKEN-NLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQL 1125
Cdd:COG4487 125 ERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQGSTQL 198
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
404-1106 |
8.51e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 8.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 404 ELEAKMDQLRTMVEAADRekvelLNQLEEEKRKVEDLQFRVEEESITKgDLEVATVSEKSRIMELEKDLALRAQEVAELR 483
Cdd:TIGR00606 455 ELKFVIKELQQLEGSSDR-----ILELDQELRKAERELSKAEKNSLTE-TLKKEVKSLQNEKADLDRKLRKLDQEMEQLN 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 484 RRLESSKppgdvdMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAReeafqkeiKALHTATEKLSKENESLRSKLD 563
Cdd:TIGR00606 529 HHTTTRT------QMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK--------KQLEDWLHSKSKEINQTRDRLA 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 564 HANKENSDVialwkSKLETAIASHQQAMEELKVSFSKGIgTDSAEFAELKTQIERLRLDYqheieslqsKQDSERSAHAK 643
Cdd:TIGR00606 595 KLNKELASL-----EQNKNHINNELESKEEQLSSYEDKL-FDVCGSQDEESDLERLKEEI---------EKSSKQRAMLA 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 644 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELE-VLQAKYTEQSEVIGNFTSQLSAV 722
Cdd:TIGR00606 660 GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTEsELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 723 KEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAesskansiTKELQEKELVLTGLQDSLNQVNQVKETL 802
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEES--------AKVCLTDVTIMERFQMELKDVERKIAQQ 811
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 803 EKELQtlkekfastseeAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRenltdmeakfKEKDDREDQLVKAKEKLEND 882
Cdd:TIGR00606 812 AAKLQ------------GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR----------KLIQDQQEQIQHLKSKTNEL 869
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 883 IAEIMKMsGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGevtlKAEQSQQQAARKHEEEKKELEEKLL 962
Cdd:TIGR00606 870 KSEKLQI-GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE----KDQQEKEELISSKETSNKKAQDKVN 944
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 963 ELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTae 1042
Cdd:TIGR00606 945 DIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT-- 1022
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23821025 1043 daMQIMEQMTKEKTETLAS---------LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEE 1106
Cdd:TIGR00606 1023 --LRKRENELKEVEEELKQhlkemgqmqVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
381-763 |
9.40e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 46.75 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 381 TSHVGEIEQELALARDGHDQ-HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEesiTKGDLEVA-- 457
Cdd:PRK04778 78 TNSLPDIEEQLFEAEELNDKfRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQ---LKDLYRELrk 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 458 TVSEKS-----RIMELEKDLALRAQEVAELRRRLESskppGDV----DMSLSLLQEISALQEKLEAI-------HTDHQG 521
Cdd:PRK04778 155 SLLANRfsfgpALDELEKQLENLEEEFSQFVELTES----GDYvearEILDQLEEELAALEQIMEEIpellkelQTELPD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 522 EMTSLK--------EHFGAREEAFQKEIKALHTATEKLSKENESLrsKLDHANKENSDV---IALWKSKLETAIASHQQA 590
Cdd:PRK04778 231 QLQELKagyrelveEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIqerIDQLYDILEREVKARKYV 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 591 MEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQ---HEIESLQSkqdsersaHAKEMETMQAKLMKIIK---------- 657
Cdd:PRK04778 309 EKNSDT-LPDFLEHAKEQNKELKEEIDRVKQSYTlneSELESVRQ--------LEKQLESLEKQYDEITEriaeqeiays 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 658 EKEDSLEAVKARLDSAEDQHlVEMEDTLNKLQEAEIKVKE-LEVLQAK------YTEQSEVIGNFTSQLSAVKEKLLDLD 730
Cdd:PRK04778 380 ELQEELEEILKQLEEIEKEQ-EKLSEMLQGLRKDELEAREkLERYRNKlheikrYLEKSNLPGLPEDYLEMFFEVSDEIE 458
|
410 420 430
....*....|....*....|....*....|...
gi 23821025 731 ALRKANSEGKLELETLRQQLEGAEKQIKNLETE 763
Cdd:PRK04778 459 ALAEELEEKPINMEAVNRLLEEATEDVETLEEE 491
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
817-1205 |
1.04e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 817 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR-------------EDQLVKAKEKLENDI 883
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHlnlvqtalrqqekIERYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 884 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKsigevtlKAEQSQQ--QAARKHEEEKKELEEKL 961
Cdd:PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT-------RAIQYQQavQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 962 LELEKKMETSYNQCQDLKAKYEKA------SSETKTKHEEILQNLQKMLADTEDklKAAQEANRDLMQDMEELKTQADKA 1035
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLeqklsvAQAAHSQFEQAYQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1036 KAAQTA-----------EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKM 1104
Cdd:PRK04863 516 QQLRMRlseleqrlrqqQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS-------ESVSEARERRMALRQQL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1105 EEFKKEIETLkqaaAQKSQQLSALQEENVKLAEELGrtrDEVTSHQKLEEERSvlnnQLLEMKKRESEFRKDADEEKASL 1184
Cdd:PRK04863 589 EQLQARIQRL----AARAPAWLAAQDALARLREQSG---EEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQAL 657
|
410 420
....*....|....*....|.
gi 23821025 1185 QKSISLTSALLTEKDAELEKL 1205
Cdd:PRK04863 658 DEEIERLSQPGGSEDPRLNAL 678
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1329-1346 |
1.21e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.21e-04
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
467-1172 |
1.35e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 467 ELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLlqEISALQEKLEA-------IHTDHQGEMTSLKEHFGAREEAfQK 539
Cdd:pfam10174 40 ELKKERALRKEEAARISVLKEQYRVTQEENQHLQL--TIQALQDELRAqrdlnqlLQQDFTTSPVDGEDKFSTPELT-EE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 540 EIKALHTATEKLSKENESLRSKLDHankensdvialwkskLETAIASHQQAMEelkvsfskgigtdsAEFAELKTQIERL 619
Cdd:pfam10174 117 NFRRLQSEHERQAKELFLLRKTLEE---------------MELRIETQKQTLG--------------ARDESIKKLLEML 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 620 RLDYQheiESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEdsleavkarldsAEDQHLVEMEDTLNKLQEAEIKVKELE 699
Cdd:pfam10174 168 QSKGL---PKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKE------------KENIHLREELHRRNQLQPDPAKTKALQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 700 vlqakyteqsEVIGNFTSQLSAVKEKLLDL-DALRKANSEGKLELETLRQQLegaeKQIKNLETERNAESSKANSITKEL 778
Cdd:pfam10174 233 ----------TVIEMKDTKISSLERNIRDLeDEVQMLKTNGLLHTEDREEEI----KQMEVYKSHSKFMKNKIDQLKQEL 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 779 QEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLREN---- 854
Cdd:pfam10174 299 SKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEkstl 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 855 ---LTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM--------------SGDNSSQLTKMNDELRLKERSVEELQLK 917
Cdd:pfam10174 379 ageIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQlaglkervkslqtdSSNTDTALTTLEEALSEKERIIERLKEQ 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 918 ltKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEIL 997
Cdd:pfam10174 459 --REREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKL 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 998 QNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKT---ETLASLEDTKQTNARLQ 1073
Cdd:pfam10174 537 ENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAeVERLLGILREVENEKNdkdKKIAELESLTLRQMKEQ 616
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1074 NeldtLKENNLKTVEELNKSKELlsvenQKMEEFKKEIETLKQAAAQksQQLSALQEENVKLAEELGRTRDEVTS-HQKL 1152
Cdd:pfam10174 617 N----KKVANIKHGQQEMKKKGA-----QLLEEARRREDNLADNSQQ--LQLEELMGALEKTRQELDATKARLSStQQSL 685
|
730 740
....*....|....*....|
gi 23821025 1153 EEERSVLNNQLLEMKKRESE 1172
Cdd:pfam10174 686 AEKDGHLTNLRAERRKQLEE 705
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
972-1148 |
1.71e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 972 YNQCQDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK------AKAAQTAEDAM 1045
Cdd:COG3883 43 QAELEELNEEYNELQAELEALQAEI-DKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYldvllgSESFSDFLDRL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1046 QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLsveNQKMEEFKKEIETLKQAAAQKSQQL 1125
Cdd:COG3883 122 SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQL 198
|
170 180
....*....|....*....|...
gi 23821025 1126 SALQEENVKLAEELGRTRDEVTS 1148
Cdd:COG3883 199 AELEAELAAAEAAAAAAAAAAAA 221
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
961-1270 |
1.78e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 961 LLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT 1040
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1041 AEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQK-----MEEFKKEIETLK 1115
Cdd:pfam02463 272 KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKeeieeLEKELKELEIKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1116 QAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALL 1195
Cdd:pfam02463 352 EAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEI 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 1196 TEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDER 1270
Cdd:pfam02463 432 LEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
607-1054 |
1.91e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 607 AEFAELKTQIERLRldyqHEIESLQSKQDS-ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEdQHLVEMEDTL 685
Cdd:COG4717 88 EEYAELQEELEELE----EELEELEAELEElREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE-ERLEELRELE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 686 NKLQEAEikvKELEVLQAKYTEQSEVIGNftSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERN 765
Cdd:COG4717 163 EELEELE---AELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 766 AEsskanSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvls 845
Cdd:COG4717 238 AA-----ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL----- 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 846 sELEKLRENLTDMEAKfkekddredQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENA 925
Cdd:COG4717 308 -QALPALEELEEEELE---------ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 926 SFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLA 1005
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE-LEELREELA 456
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 23821025 1006 DTEDKLKAAQEANR--DLMQDMEELKTQ-ADKAKAAQTAEDAMQIMEQMTKE 1054
Cdd:COG4717 457 ELEAELEQLEEDGElaELLQELEELKAElRELAEEWAALKLALELLEEAREE 508
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
800-918 |
2.00e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.00 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 800 ETLEKELQTLKEKfaSTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR----EDQLVKA 875
Cdd:COG2433 376 LSIEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 23821025 876 KEKLENDI---AEIMKMSGDNsSQLTKmndELRLKERSVEELQLKL 918
Cdd:COG2433 454 RSEERREIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
800-1294 |
2.77e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 800 ETLEkELQTLKEKFASTSEEAvsAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 879
Cdd:COG4913 252 ELLE-PIRELAERYAAARERL--AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 880 ENDIAEImkmSGDNSSQLtkmndelrlkERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 959
Cdd:COG4913 329 EAQIRGN---GGDRLEQL----------EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 960 KLLELEKKMETSYnqcqDLKAKYEKASSETKTKHEEIL----------QNLQKMLADTEDKLKAAQEANR---DLMQDME 1026
Cdd:COG4913 396 LEEELEALEEALA----EAEAALRDLRRELRELEAEIAslerrksnipARLLALRDALAEALGLDEAELPfvgELIEVRP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1027 E-----------LKTQA-------DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAR-LQNELDTlKENNLKT- 1086
Cdd:COG4913 472 EeerwrgaiervLGGFAltllvppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDsLAGKLDF-KPHPFRAw 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1087 -VEELNKSKELLSVENQkmEEFKKE--------------------------------------IETLKQAAAQKSQQLSA 1127
Cdd:COG4913 551 lEAELGRRFDYVCVDSP--EELRRHpraitragqvkgngtrhekddrrrirsryvlgfdnrakLAALEAELAELEEELAE 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1128 LQEENVKLAEELGRTRDEVTSHQKLEEersvLNNQLLEMKKRESEFRkDADEEKASLQKSisltSALLTEKDAELEKLRN 1207
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAE----YSWDEIDVASAEREIA-ELEAELERLDAS----SDDLAALEEQLEELEA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1208 EVTVLRGEnatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAE---EDERAQESQIDFLNSVIV 1284
Cdd:COG4913 700 ELEELEEE----------LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEERFAAALGDAVERELRE 769
|
570
....*....|
gi 23821025 1285 DLQRKNQDLK 1294
Cdd:COG4913 770 NLEERIDALR 779
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
535-859 |
3.81e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.95 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 535 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAE----FA 610
Cdd:COG5185 242 ESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEeqlaAA 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 611 ELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEdsLEAVKARLDSAEDQHLVEMEDTLNKLQE 690
Cdd:COG5185 322 EAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVE--LSKSSEELDSFKDTIESTKESLDEIPQN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 691 AEIKVKE-LEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESS 769
Cdd:COG5185 400 QRGYAQEiLATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 770 KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQ----TRMQDTVNKLHQKEEQFNVLS 845
Cdd:COG5185 480 KEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGyahiLALENLIPASELIQASNAKTD 559
|
330
....*....|....
gi 23821025 846 SELEKLRENLTDME 859
Cdd:COG5185 560 GQAANLRTAVIDEL 573
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
638-883 |
3.88e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 45.02 E-value: 3.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 638 RSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTS 717
Cdd:pfam05667 231 LASRLTPEEYRKRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 718 QLSAVKEKLL----DLDALRKANSEgklELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLN 793
Cdd:pfam05667 311 EAPAATSSPPtkveTEEELQQQREE---ELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 794 ------------QVNQVKetLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQ----KEEQFNVLSSELEKLRENLTD 857
Cdd:pfam05667 388 vkkktldllpdaEENIAK--LQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEaksnKEDESQRKLEEIKELREKIKE 465
|
250 260
....*....|....*....|....*.
gi 23821025 858 MEAKFKEKDDREDQLVKAKEKLENDI 883
Cdd:pfam05667 466 VAEEAKQKEELYKQLVAEYERLPKDV 491
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
354-905 |
4.44e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 4.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALArdgHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEE 433
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHA---KKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 434 KRKVEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLE 513
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 514 aiHTDHQGemTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQamee 593
Cdd:TIGR00618 546 --DVYHQL--TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL---- 617
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 594 lkvsfskgigtdsaefaELKTQIErlrLDYQHEIESLQSKQDSErsahAKEMETMQAKLMKIIKEKEdsleavkarldsa 673
Cdd:TIGR00618 618 -----------------LRKLQPE---QDLQDVRLHLQQCSQEL----ALKLTALHALQLTLTQERV------------- 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 674 EDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLEL-ETLRQQLEG 752
Cdd:TIGR00618 661 REHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLgSDLAAREDA 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 753 AEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQT----LKEKFASTSEEAVSAQTRMQ 828
Cdd:TIGR00618 741 LNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEdthlLKTLEAEIGQEIPSDEDILN 820
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23821025 829 DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLendIAEIMKMSGDNSSQLTKMNDELR 905
Cdd:TIGR00618 821 LQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKI---IQLSDKLNGINQIKIQFDGDALI 894
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
331-683 |
4.51e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 331 RTGLLTETSSRYARKISGTTALQEA---LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEA 407
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-----------NVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 408 KMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEVATVSekSRIMELEKDLALRaqevaELRRRLE 487
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE--ARLREIEQKLNRL-----TLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 488 SSKPPGDVDMSLSLLQEISALQEKLEAIHTDhqgemtslKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANK 567
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGK--------KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 568 EnsdvialwKSKLETAIASHQQAMEELKVsfskgigTDSAEFAELKtQIERLRLDYQHEIESLQSKQD--SERSAHAKEM 645
Cdd:TIGR02169 904 K--------IEELEAQIEKKRKRLSELKA-------KLEALEEELS-EIEDPKGEDEEIPEEELSLEDvqAELQRVEEEI 967
|
330 340 350
....*....|....*....|....*....|....*...
gi 23821025 646 ETMQAKLMKIIKEKEDsleaVKARLDSAEDQHLVEMED 683
Cdd:TIGR02169 968 RALEPVNMLAIQEYEE----VLKRLDELKEKRAKLEEE 1001
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
530-933 |
4.81e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 530 FG--ARE---EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALW-KSKLETAIASHQQAMEELkvsfskgig 603
Cdd:PRK04863 779 FGraAREkriEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAfEADPEAELRQLNRRRVEL--------- 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 604 tdSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAvkARLDSAEDQHLVEMED 683
Cdd:PRK04863 850 --ERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEA--KRFVQQHGNALAQLEP 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 684 TLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLE-----LETLRQQLEGAEKQIK 758
Cdd:PRK04863 926 IVSVLQSDP---EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAknsdlNEKLRQRLEQAEQERT 1002
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 759 NLETE-RNAESskansitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQtrmQDTVNK-LHQ 836
Cdd:PRK04863 1003 RAREQlRQAQA--------QLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARAR---RDELHArLSA 1071
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 837 KEEQFNVLSSELEKLRENLTDMEAKFK--EKD--DREDQLVKAKekleNDIAEIMKMSGDNSsqltkmnDELRLKERSVE 912
Cdd:PRK04863 1072 NRSRRNQLEKQLTFCEAEMDNLTKKLRklERDyhEMREQVVNAK----AGWCAVLRLVKDNG-------VERRLHRRELA 1140
|
410 420
....*....|....*....|.
gi 23821025 913 ELqlkltKANENASFLQKSIG 933
Cdd:PRK04863 1141 YL-----SADELRSMSDKALG 1156
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
624-865 |
6.30e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 6.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 624 QHEIESLQSKQDSERSAhAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQeaeikvKELEVLQA 703
Cdd:COG4942 26 EAELEQLQQEIAELEKE-LAALKKEEKALLKQLAALERRIAALARRIRALEQE-LAALEAELAELE------KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 704 KYTEQSEVIGNFtsqlsavkeklldLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEkel 783
Cdd:COG4942 98 ELEAQKEELAEL-------------LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE--- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 784 vLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 863
Cdd:COG4942 162 -LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
..
gi 23821025 864 EK 865
Cdd:COG4942 241 ER 242
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1008-1180 |
6.81e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1008 EDKLKAAQEANRDLMQD----MEELKtqadKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1083
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEakkeAEAIK----KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1084 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLnnql 1163
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK-EILLEKVEEE------ARHEAAVL---- 174
|
170
....*....|....*..
gi 23821025 1164 leMKKRESEFRKDADEE 1180
Cdd:PRK12704 175 --IKEIEEEAKEEADKK 189
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
626-891 |
7.80e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 7.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 626 EIESLQSKQDsersaHAKEMETMQAKLMKIIKEKEDsleAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKY 705
Cdd:PHA02562 182 QIQTLDMKID-----HIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 706 TEQSEVIGNFTSQLSAvkeKLLDLDALRKANSEGKlELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEkelvL 785
Cdd:PHA02562 254 SAALNKLNTAAAKIKS---KIEQFQKVIKMYEKGG-VCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE----L 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 786 TGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQdtvnklhQKEEQFNVLSSELEKLRENLTDmeaKFKEK 865
Cdd:PHA02562 326 EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE-------ELQAEFVDNAEELAKLQDELDK---IVKTK 395
|
250 260
....*....|....*....|....*..
gi 23821025 866 DDredqlvKAKEKLENDIA-EIMKMSG 891
Cdd:PHA02562 396 SE------LVKEKYHRGIVtDLLKDSG 416
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
720-1044 |
8.79e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 720 SAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVK 799
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 800 ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREdqLVKAKEKL 879
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE--AEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 880 ENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 959
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 960 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQ 1039
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLV 348
|
....*
gi 23821025 1040 TAEDA 1044
Cdd:COG4372 349 GLLDN 353
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
990-1243 |
8.80e-04 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 43.74 E-value: 8.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 990 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQiMEQMTKEKTETLASLEDTKQTN 1069
Cdd:pfam15964 362 KSELERQKERLEKELASQQEKRAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQ-VEKVTREKNSLVSQLEEAQKQL 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1070 ARLQNELDT--------LKENNLKTVEELNKSKEL-------LSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1134
Cdd:pfam15964 441 ASQEMDVTKvcgemryqLNQTKMKKDEAEKEHREYrtktgrqLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLK 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1135 LAEELGRTRDEV--TSHQKLEEERSVLNN---QLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1209
Cdd:pfam15964 521 LTELLGESEHQLhlTRLEKESIQQSFSNEakaQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEEC 600
|
250 260 270
....*....|....*....|....*....|....
gi 23821025 1210 TVLrgenatAKSLHSVVQTLESDKVKLELKVKNL 1243
Cdd:pfam15964 601 CTL------AKKLEEITQKSRSEVEQLSQEKEYL 628
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
404-563 |
9.41e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVE--EESITKGDLEVATVSEK-----SRIMEL--EKDLAL 474
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEdlEKEIKRLELEIEEVEARikkyeEQLGNVrnNKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 475 RAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIhtdhQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKE 554
Cdd:COG1579 94 LQKEIESLKRRISDLE-----DEILELMERIEELEEELAEL----EAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
....*....
gi 23821025 555 NESLRSKLD 563
Cdd:COG1579 165 REELAAKIP 173
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
778-1318 |
9.74e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 9.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 778 LQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTD 857
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 858 MEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELqLKLTKANENASFLQKSI-GEVT 936
Cdd:PRK01156 244 LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDY-FKYKNDIENKKQILSNIdAEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 937 -----------LKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLA 1005
Cdd:PRK01156 323 kyhaiikklsvLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1006 DTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDA----MQIMEQMTK----------EKTETLasLEDTKQTNAR 1071
Cdd:PRK01156 403 DPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDElsrnMEMLNGQSVcpvcgttlgeEKSNHI--INHYNEKKSR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1072 LQNELDTLKENNLKTVEELNKSKELLS-VENQKMEEFKKEIETLKQAAAQKSQ---QLSALQEENVKLAE--------EL 1139
Cdd:PRK01156 481 LEEKIREIEIEVKDIDEKIVDLKKRKEyLESEEINKSINEYNKIESARADLEDikiKINELKDKHDKYEEiknrykslKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1140 GRTRDEVTSHQKLEEERSVLN-----NQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1214
Cdd:PRK01156 561 EDLDSKRTSWLNALAVISLIDietnrSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1215 ENATAKSLHSVVQTLESDKVKL---ELKVKNLELQLKENKRQLSSSSGNTDAqAEEDERAQESQIDFLNSVIVDLQRKNQ 1291
Cdd:PRK01156 641 NKILIEKLRGKIDNYKKQIAEIdsiIPDLKEITSRINDIEDNLKKSRKALDD-AKANRARLESTIEILRTRINELSDRIN 719
|
570 580
....*....|....*....|....*....
gi 23821025 1292 DLKMKVEMMS--EAALNGNGEDLNSYDSD 1318
Cdd:PRK01156 720 DINETLESMKkiKKAIGDLKRLREAFDKS 748
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
740-909 |
1.02e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 740 KLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKelvltgLQDSLNQvnqvketLEKELQTLKEKFastsEE 819
Cdd:COG0542 403 RMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAE------LRDELAE-------LEEELEALKARW----EA 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 820 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDredqlvkakeklENDIAEIM---------KMS 890
Cdd:COG0542 466 EKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVT------------EEDIAEVVsrwtgipvgKLL 533
|
170
....*....|....*....
gi 23821025 891 GDNSSQLTKMNDElrLKER 909
Cdd:COG0542 534 EGEREKLLNLEEE--LHER 550
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
500-808 |
1.05e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.99 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 500 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFgareeafQKEIKALHTATEKLSKENESLRSKLDHANKENSDVialwKSK 579
Cdd:pfam00038 22 FLEQQNKLLETKISELRQKKGAEPSRLYSLY-------EKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDF----RQK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 580 LETAIAsHQQAMEelkvsfskgigtdsAEFAELKTQIERL---RLDYQHEIESLQSKQDSERSAHAKEMETMQAKLmkii 656
Cdd:pfam00038 91 YEDELN-LRTSAE--------------NDLVGLRKDLDEAtlaRVDLEAKIESLKEELAFLKKNHEEEVRELQAQV---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 657 kekedSLEAVKARLDSAEDQHLVE-MEDTLNKLQE-AEIKVKELEVL-QAKYTEQSEVIGNFTSQLSAVKEKLLDldaLR 733
Cdd:pfam00038 152 -----SDTQVNVEMDAARKLDLTSaLAEIRAQYEEiAAKNREEAEEWyQSKLEELQQAAARNGDALRSAKEEITE---LR 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 734 KANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSItkeLQEKELVLTGLQDSLNQVNQ-------VKETLEKEL 806
Cdd:pfam00038 224 RTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQEL---ISELEAELQETRQEMARQLReyqellnVKLALDIEI 300
|
..
gi 23821025 807 QT 808
Cdd:pfam00038 301 AT 302
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
538-881 |
1.08e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 43.30 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 538 QKEIKALHTATEKLSKENESLRSKLDHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGIG-TDSAEFAELKTQI 616
Cdd:pfam06160 106 LEELDELLESEEKNREEVEELKDKYRELRKT----LLANRFSYGPAIDELEKQLAEIEEEFSQFEElTESGDYLEAREVL 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 617 ERLRldyqHEIESLQSK-----------------QDSERSAHAKEMETMQ-----AKLMKIIKEKEDSLEAVKARLDSae 674
Cdd:pfam06160 182 EKLE----EETDALEELmedipplyeelktelpdQLEELKEGYREMEEEGyalehLNVDKEIQQLEEQLEENLALLEN-- 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 675 dqhlVEMEDTLNKLQEAEIKVKEL-EVLQAKYTEQSEVIGNFtsqlsavkEKLLD-LDALRKANSEGKLELETLRQ--QL 750
Cdd:pfam06160 256 ----LELDEAEEALEEIEERIDQLyDLLEKEVDAKKYVEKNL--------PEIEDyLEHAEEQNKELKEELERVQQsyTL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 751 EGAEKQI-KNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQD 829
Cdd:pfam06160 324 NENELERvRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLDE 403
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 23821025 830 TVNKLH----------------QKEEQFNVLSSELEKLRENLT----DMEAKFKEKDDREDQLVKAKEKLEN 881
Cdd:pfam06160 404 FKLELReikrlveksnlpglpeSYLDYFFDVSDEIEDLADELNevplNMDEVNRLLDEAQDDVDTLYEKTEE 475
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
788-1033 |
1.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 788 LQDSLNQVNQVKETLEKELQTLKEKfASTSEEAVSA-QTRmqdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKD 866
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKE-LEEAEAALEEfRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 867 DREDQLVKAKEKLENDIAEIMkmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANEnasflqksigevTLKAEQSQQQA 946
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHP------------DVIALRAQIAA 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 947 ARKheEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTkheeiLQNLQKMLADTEDKLKAAQEANRDLMQDME 1026
Cdd:COG3206 303 LRA--QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAE-----LPELEAELRRLEREVEVARELYESLLQRLE 375
|
....*..
gi 23821025 1027 ELKTQAD 1033
Cdd:COG3206 376 EARLAEA 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
577-794 |
1.71e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 577 KSKLETAIASHQQAMEELKvsfsKGIGTDSAEFAELKTQIERLrldyqheiESLQSKQDSERSAHAKEMETMQAKLMKII 656
Cdd:COG4942 29 LEQLQQEIAELEKELAALK----KEEKALLKQLAALERRIAAL--------ARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 657 KEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKAN 736
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 737 SEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQ 794
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1052-1304 |
1.77e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1052 TKEKTETLASLEDTKQTNARLQNELDTLK--ENNLKTVEELNKSKELL---SVENQKMEEFKK--EIETLKQA------- 1117
Cdd:COG3206 63 PQSSDVLLSGLSSLSASDSPLETQIEILKsrPVLERVVDKLNLDEDPLgeeASREAAIERLRKnlTVEPVKGSnvieisy 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1118 -------AAQKSQQL-SALQEENVKL-AEELGRTRDEvtshqkLEEERSVLNNQLLEMKKRESEFRK-----DADEEKAS 1183
Cdd:COG3206 143 tspdpelAAAVANALaEAYLEQNLELrREEARKALEF------LEEQLPELRKELEEAEAALEEFRQknglvDLSEEAKL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1184 LQKSISLTSALLTEKDAELEKLRNEVTVLR------GENATAKSLHSVVQTLESDKVKLELKVKNLELQLKEN------- 1250
Cdd:COG3206 217 LLQQLSELESQLAEARAELAEAEARLAALRaqlgsgPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNhpdvial 296
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 23821025 1251 KRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVDLQRKNQDLKMKVEMMSEAA 1304
Cdd:COG3206 297 RAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
462-693 |
1.98e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 462 KSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMslsLLQEISALQEKLEAIhtdhQGEMTSLKehfgAREEAFQKEI 541
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEA----RAELAEAE----ARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 542 KALHTATEKLSkeneslrskldhankeNSDVIAlwksKLETAIASHQQAMEELKVSFskgiGTDSAEFAELKTQIERLRL 621
Cdd:COG3206 250 GSGPDALPELL----------------QSPVIQ----QLRAQLAELEAELAELSARY----TPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 23821025 622 DYQHEIESLQSKQDSERSAHAKEMETMQAKL------MKIIKEKEDSLEAVKARLDSAEDQHlvemEDTLNKLQEAEI 693
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY----ESLLQRLEEARL 379
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
716-885 |
2.02e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.74 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 716 TSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQV 795
Cdd:pfam05911 656 IDNLSSDPEIPSDGPLVSGSNDLKTEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 796 NQVKETLEKELQTLKEKFASTSEEAVSAQTRmqdtVNKLHQKeeqFNVLSSELEKLRENLTDMEAKFKEkddREDQL--V 873
Cdd:pfam05911 736 KESNSLAETQLKCMAESYEDLETRLTELEAE----LNELRQK---FEALEVELEEEKNCHEELEAKCLE---LQEQLerN 805
|
170
....*....|..
gi 23821025 874 KAKEKLENDIAE 885
Cdd:pfam05911 806 EKKESSNCDADQ 817
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
997-1174 |
2.40e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 997 LQNLQKMLADTEDKLKAAQEANR---------DLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDT- 1065
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARAElAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1066 ---------KQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1136
Cdd:COG3206 264 viqqlraqlAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL 343
|
170 180 190
....*....|....*....|....*....|....*...
gi 23821025 1137 EELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFR 1174
Cdd:COG3206 344 AELPELEAEL---RRLEREVEVARELYESLLQRLEEAR 378
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
551-791 |
2.51e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 551 LSKENESLRSKLDHANkENSDVIALWKSKLETAIASHQQAMEELKVSfskgigtDSAEFAELKTQIERLR---LDYQHEI 627
Cdd:PHA02562 165 LSEMDKLNKDKIRELN-QQIQTLDMKIDHIQQQIKTYNKNIEEQRKK-------NGENIARKQNKYDELVeeaKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 628 ESLQ------SKQDSERSAHAKEMETMQAKL-------MKIIKEKED---------SLEAVKARLDSAEDQhLVEMEDTL 685
Cdd:PHA02562 237 EELTdellnlVMDIEDPSAALNKLNTAAAKIkskieqfQKVIKMYEKggvcptctqQISEGPDRITKIKDK-LKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 686 NKLQEAeikVKELEVLQAKYTEQSEVIGNFTSQLSAVKEkllDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERN 765
Cdd:PHA02562 316 EKLDTA---IDELEEIMDEFNEQSKKLLELKNKISTNKQ---SLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389
|
250 260
....*....|....*....|....*.
gi 23821025 766 AESSKANSITKELQEKELVLTGLQDS 791
Cdd:PHA02562 390 KIVKTKSELVKEKYHRGIVTDLLKDS 415
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
742-949 |
2.70e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 742 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLN----QVNQVKETLEKELQTLKEKFASTS 817
Cdd:COG3883 24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAeaeaEIEERREELGERARALYRSGGSVS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 818 E-EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ 896
Cdd:COG3883 104 YlDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 23821025 897 LTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARK 949
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
394-1223 |
2.92e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 42.35 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 394 ARDGHDQHVLELEAKMDQLRTMVEAADRekvellNQLEEEKRKVEDLQFRVEEESITKGDLEVATvseKSRIMELEKDLA 473
Cdd:TIGR01612 1477 ATNDHDFNINELKEHIDKSKGCKDEADK------NAKAIEKNKELFEQYKKDVTELLNKYSALAI---KNKFAKTKKDSE 1547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 474 LRAQEVAELRRR--LESSKPPgdvdmslsllQEISALQEKLEAIHTDHQGEMTSLKEHFGAR------EEAFQKeIKALH 545
Cdd:TIGR01612 1548 IIIKEIKDAHKKfiLEAEKSE----------QKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQlslenfENKFLK-ISDIK 1616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 546 TATEKLSKENESLRSKLDHANKENSDVIAlwkSKLETAIASHQQAMEELKvSFSKGIGTDSAEFAELKTQIERLRLDYQh 625
Cdd:TIGR01612 1617 KKINDCLKETESIEKKISSFSIDSQDTEL---KENGDNLNSLQEFLESLK-DQKKNIEDKKKELDELDSEIEKIEIDVD- 1691
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 626 eieslQSKQDSERSAHAKEMETMQAKLMKIIKEKEdSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELevlqakY 705
Cdd:TIGR01612 1692 -----QHKKNYEIGIIEKIKEIAIANKEEIESIKE-LIEPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDI------Y 1759
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 706 TEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELetlrqqlegaekqIKNLETERNAESSKANSitkELQEKELVL 785
Cdd:TIGR01612 1760 EEFIELYNIIAGCLETVSKEPITYDEIKNTRINAQNEF-------------LKIIEIEKKSKSYLDDI---EAKEFDRII 1823
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 786 TGLQDSLNQVNqvkETLEKELQTLKEKF--ASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSEleklrenltdmeaKFK 863
Cdd:TIGR01612 1824 NHFKKKLDHVN---DKFTKEYSKINEGFddISKSIENVKNSTDENLLFDILNKTKDAYAGIIGK-------------KYY 1887
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 864 EKDDREDQLVKAKEKLENDI-AEIMKMSGDNssQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEV--TLKAE 940
Cdd:TIGR01612 1888 SYKDEAEKIFINISKLANSInIQIQNNSGID--LFDNINIAILSSLDSEKEDTLKFIPSPEKEPEIYTKIRDSydTLLDI 1965
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 941 QSQQQAARKHEEEKKELEEKLLELEKKMETSyNQCQDLKakyekasSETKTKHEEILQNLQKML--ADTEDKLKAAQEAN 1018
Cdd:TIGR01612 1966 FKKSQDLHKKEQDTLNIIFENQQLYEKIQAS-NELKDTL-------SDLKYKKEKILNDVKLLLhkFDELNKLSCDSQNY 2037
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1019 RDLMQ--DMEELKTQAD---KAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKS 1093
Cdd:TIGR01612 2038 DTILElsKQDKIKEKIDnyeKEKEKFGIDFDVKAMEEKFDNDIKDIEKFENNYKHSEKDNHDFSEEKDNIIQSKKKLKEL 2117
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1094 KELLSVENQKME--------------EFKKE---------IETLKQAAAQKSQQLSALqeenVKLAEELGRTRDEVTSHQ 1150
Cdd:TIGR01612 2118 TEAFNTEIKIIEdkiiekndlidkliEMRKEcllfsyatlVETLKSKVINHSEFITSA----AKFSKDFFEFIEDISDSL 2193
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 23821025 1151 KLEEERSVLNNQLLEMKKRESEFRKDADEEKASlqksisltsalLTEKDAELEKLRNEVTVL---RGENATAKSLH 1223
Cdd:TIGR01612 2194 NDDIDALQIKYNLNQTKKHMISILADATKDHNN-----------LIEKEKEATKIINNLTELftiDFNNADADILH 2258
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
350-732 |
2.94e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 350 TALQEALKEKQQHIEQLLAERDleraevaKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQ 429
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQE-------AANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 430 LEEEKRKVEDLqfrveeeSITKGDLEVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPpgDVDMSLSLLQEISALQ 509
Cdd:pfam07888 103 YKELSASSEEL-------SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKE--RAKKAGAQRKEEEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 510 EKLEAIHTDHQGEMTSL-KEHFGAREEAFQKEIKALhtateKLSKENESLRSKLDHANKENSDVIALWK--SKLETAIAS 586
Cdd:pfam07888 174 KQLQAKLQQTEEELRSLsKEFQELRNSLAQRDTQVL-----QLQDTITTLTQKLTTAHRKEAENEALLEelRSLQERLNA 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 587 HQQAMEELKVSFSKGIGTDSAEFAEL-KTQIERLRLDYQHEIESLQSKQDseRSAHAKEMETMQ----------AKLMKI 655
Cdd:pfam07888 249 SERKVEGLGEELSSMAAQRDRTQAELhQARLQAAQLTLQLADASLALREG--RARWAQERETLQqsaeadkdriEKLSAE 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 656 IKEKEDSL-------EAVKARLDSAEDQHLVEMEDTLNKLQE--AEIKV--KELEVLQAKYTEQSEVIGNFTSQLSAVKE 724
Cdd:pfam07888 327 LQRLEERLqeermerEKLEVELGREKDCNRVQLSESRRELQElkASLRVaqKEKEQLQAEKQELLEYIRQLEQRLETVAD 406
|
....*...
gi 23821025 725 KLLDLDAL 732
Cdd:pfam07888 407 AKWSEAAL 414
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
350-1147 |
3.39e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 350 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlARDGHDQHVLELEAKMDQLRTMVEaadREKVELLNQ 429
Cdd:pfam01576 260 NNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELE-ALKTELEDTLDTTAAQQELRSKRE---QEVTELKKA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 430 LEEEKRK---------------VEDLQFRVEEESITKGDLEVATVSEKSRIMELEKDLAL---RAQEVAELRRRLE---- 487
Cdd:pfam01576 336 LEEETRSheaqlqemrqkhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTlqqAKQDSEHKRKKLEgqlq 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 488 --------SSKPPGDVDMSLSLLQ----EISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIK---ALHTATEKLS 552
Cdd:pfam01576 416 elqarlseSERQRAELAEKLSKLQseleSVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRqklNLSTRLRQLE 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 553 KENESLRSKLDHANKEnsdvialwKSKLETAIASHQQAMEELKVSFSkgigtdsaEFAELKTQIERLRLDYQHEIESLqS 632
Cdd:pfam01576 496 DERNSLQEQLEEEEEA--------KRNVERQLSTLQAQLSDMKKKLE--------EDAGTLEALEEGKKRLQRELEAL-T 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 633 KQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAE------DQHLVEMEDTLNKLQ------EAEIKVKELEV 700
Cdd:pfam01576 559 QQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEkkqkkfDQMLAEEKAISARYAeerdraEAEAREKETRA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 701 LqakyteqsevignftSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQE 780
Cdd:pfam01576 639 L---------------SLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 781 kelvltgLQDSLNQVNQVKETLEKELQTLKEKFAstseeavsaqtrmQDTVNKLHQKEEQFNVLSSELEklrenltDMEA 860
Cdd:pfam01576 704 -------LEDELQATEDAKLRLEVNMQALKAQFE-------------RDLQARDEQGEEKRRQLVKQVR-------ELEA 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 861 KFKEKDDREDQLVKAKEKLENDIAEIM-------KMSGDNSSQLTKMNDELRLKERSVEELQLK----LTKANENASFLQ 929
Cdd:pfam01576 757 ELEDERKQRAQAVAAKKKLELDLKELEaqidaanKGREEAVKQLKKLQAQMKDLQRELEEARASrdeiLAQSKESEKKLK 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 930 KSIGEV-TLKAEQSQQQAARKHEEEKKELEEKLLELEkkmetsynqcqdlkAKYEKASSETKTKHEEILQNLQKMLADTE 1008
Cdd:pfam01576 837 NLEAELlQLQEDLAASERARRQAQQERDELADEIASG--------------ASGKSALQDEKRRLEARIAQLEEELEEEQ 902
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1009 DKLKAAQEANRDLMQDMEELKTQ-ADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDT-----KQTNARLQNELDTLKEN 1082
Cdd:pfam01576 903 SNTELLNDRLRKSTLQVEQLTTElAAERSTSQKSESARQQLERQNKELKAKLQEMEGTvkskfKSSIAALEAKIAQLEEQ 982
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 1083 NLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVT 1147
Cdd:pfam01576 983 LEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEAS 1047
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-865 |
4.07e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 334 LLTETSSRYARKISGTTALQ-EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQL 412
Cdd:pfam05483 261 FLLEESRDKANQLEEKTKLQdENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEEL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 413 rtmvEAADREKVELLNQLEEEKRKVEDLqFRVEEESITKGD--LEVATVSEKSRIMELEKDLALRAQ---EVAELRRRL- 486
Cdd:pfam05483 341 ----NKAKAAHSFVVTEFEATTCSLEEL-LRTEQQRLEKNEdqLKIITMELQKKSSELEEMTKFKNNkevELEELKKILa 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 487 ESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGA---REEAFQKEIKALHTATEKLSKENESLRSKLD 563
Cdd:pfam05483 416 EDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAiktSEEHYLKEVEDLKTELEKEKLKNIELTAHCD 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 564 HANKEN-------SDVIALWKSKLETAIASHQQAMEELKvsfskGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQD- 635
Cdd:pfam05483 496 KLLLENkeltqeaSDMTLELKKHQEDIINCKKQEERMLK-----QIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDk 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 636 SERSAHAKEMETMQA-KLMKIIKEKEDSLEAvKARLDSAEDQHLVEMEDTLNKLQEAEikVKELEVLQAKyteqsevIGN 714
Cdd:pfam05483 571 SEENARSIEYEVLKKeKQMKILENKCNNLKK-QIENKNKNIEELHQENKALKKKGSAE--NKQLNAYEIK-------VNK 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 715 FTSQLSAVKEKLLDL-DALRKANSEGKLELETLRQQLEGAEKQIknleterNAESSKANSITKELQEKELVLTGLQDS-L 792
Cdd:pfam05483 641 LELELASAKQKFEEIiDNYQKEIEDKKISEEKLLEEVEKAKAIA-------DEAVKLQKEIDKRCQHKIAEMVALMEKhK 713
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 23821025 793 NQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEK 865
Cdd:pfam05483 714 HQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
1123-1289 |
4.08e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 40.78 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1123 QQLSALQEENVKLAEELGRTRDEVT--SHQ--KLEEERSVLNNQLLEMKKRESE-FRKDADEEKASLQKSISLTsaLLTE 1197
Cdd:pfam04849 94 KQNSVLTERNEALEEQLGSAREEILqlRHElsKKDDLLQIYSNDAEESETESSCsTPLRRNESFSSLHGCVQLD--ALQE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1198 KDAELE----KLRNEVTVLRGENATaksLHSVVQTLESDKVKlelkvknlelQLKENKRQLSSSSGNTDAQAEEDERAQE 1273
Cdd:pfam04849 172 KLRGLEeenlKLRSEASHLKTETDT---YEEKEQQLMSDCVE----------QLSEANQQMAELSEELARKMEENLRQQE 238
|
170
....*....|....*.
gi 23821025 1274 sQIDFLNSVIVDLQRK 1289
Cdd:pfam04849 239 -EITSLLAQIVDLQHK 253
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
643-888 |
4.10e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.05 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 643 KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--HLVEMEDTLNK-----LQEAEIKVKELEVLQAKYTEQSEVIGNF 715
Cdd:COG1340 4 DELSSSLEELEEKIEELREEIEELKEKRDELNEElkELAEKRDELNAqvkelREEAQELREKRDELNEKVKELKEERDEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 716 TSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNleternaesskaNSITKElQEKELV--LTGLQDSLN 793
Cdd:COG1340 84 NEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQT------------EVLSPE-EEKELVekIKELEKELE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 794 QVNQVKEtLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLV 873
Cdd:COG1340 151 KAKKALE-KNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELH 229
|
250
....*....|....*
gi 23821025 874 KAKEKLENDIAEIMK 888
Cdd:COG1340 230 EEIIELQKELRELRK 244
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1010-1327 |
5.60e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.99 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1010 KLKAAQEANRDLMQDMEELKTQADKAKaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNA----RLQNELDTLKENNLK 1085
Cdd:PLN03229 423 KREAVKTPVRELEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLEYTEAviamGLQERLENLREEFSK 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1086 TVEELNKSKELLSVENQK-MEEFKKEI------ETLKQA-----AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLE 1153
Cdd:PLN03229 498 ANSQDQLMHPVLMEKIEKlKDEFNKRLsrapnyLSLKYKldmlnEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIK 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1154 EERSVLNNQLLEMK-KRESEFRKDADEEKASLQKSISLTSA-LLTEKDAELEKLRNEvTVLRGENATAKSLHSVVQTLES 1231
Cdd:PLN03229 578 EKMEALKAEVASSGaSSGDELDDDLKEKVEKMKKEIELELAgVLKSMGLEVIGVTKK-NKDTAEQTPPPNLQEKIESLNE 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1232 D---KVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQIDFLNSVIVD---LQRKNQDLKMKVEMMSEAAL 1305
Cdd:PLN03229 657 EinkKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNsseLKEKFEELEAELAAARETAA 736
|
330 340
....*....|....*....|..
gi 23821025 1306 NGNGEDLNSYDSDDQEKQSKKK 1327
Cdd:PLN03229 737 ESNGSLKNDDDKEEDSKEDGSR 758
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
788-1144 |
6.19e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 788 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLhqkEEQFNVLSSELEKLRENLTDMEAKFKEKDD 867
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRREL---ESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 868 REDQLVKAKEKLendiaeiMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQqqaa 947
Cdd:pfam07888 109 SSEELSEEKDAL-------LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ---- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 948 rkheeekkeleeklleleKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEE 1027
Cdd:pfam07888 178 ------------------AKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQ-LQDTITTLTQKLTTAHRKEAENEALLEE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1028 LKTQADKAKAAQTAEDAMqimeqmtKEKTETLASLEDTKQTN---ARLQNELDTLK--ENNLKTVEELNKSKELLSVENQ 1102
Cdd:pfam07888 239 LRSLQERLNASERKVEGL-------GEELSSMAAQRDRTQAElhqARLQAAQLTLQlaDASLALREGRARWAQERETLQQ 311
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 23821025 1103 KMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD 1144
Cdd:pfam07888 312 SAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKD 353
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1019-1196 |
6.58e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.85 E-value: 6.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1019 RDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLS 1098
Cdd:PRK12705 29 QRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1099 VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKlAEELGRTRDEvtshqkLEEERSVLNNQLLEMKKRESEfRKDAD 1178
Cdd:PRK12705 109 EREKALSARELELEELEKQLDNELYRVAGLTPEQAR-KLLLKLLDAE------LEEEKAQRVKKIEEEADLEAE-RKAQN 180
|
170
....*....|....*...
gi 23821025 1179 EEKASLQKSISLTSALLT 1196
Cdd:PRK12705 181 ILAQAMQRIASETASDLS 198
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
967-1254 |
6.84e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.88 E-value: 6.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 967 KMETSYNQCQdlkakYEKASSETKTKHeeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaQTAEDAMQ 1046
Cdd:pfam05557 35 KASALKRQLD-----RESDRNQELQKR---IRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKE--SQLADARE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1047 IMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN----------LKTVEELNKSKELLSVENQKMEEFKKEIetlkQ 1116
Cdd:pfam05557 105 VISCLKNELSELRRQIQRAELELQSTNSELEELQERLdllkakaseaEQLRQNLEKQQSSLAEAEQRIKELEFEI----Q 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1117 AAAQKSQQLSALQEENVKLAE---ELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKdADEEKASLQKSISLTSA 1193
Cdd:pfam05557 181 SQEQDSEIVKNSKSELARIPElekELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEK-YREEAATLELEKEKLEQ 259
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 1194 LLTE-----KDAEL-----EKLRNEVTVLRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQL 1254
Cdd:pfam05557 260 ELQSwvklaQDTGLnlrspEDLSRRIEQLQQREIVLKeensSLTSSARQLEKARRELEQELAQYLKKIEDLNKKL 334
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
972-1327 |
8.38e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 8.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 972 YNQCQDLKA---KYEKASSETKTKHEEILQNlQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA--AQTAEDAMQ 1046
Cdd:COG5022 836 EEVEFSLKAevlIQKFGRSLKAKKRFSLLKK-ETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLEleSEIIELKKS 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1047 IMEQMTKE---KTETLASLEDTKQTNarlqnELDTLKENNLKTVEELNKskelLSVENQKMEEFKKEIE-TLKQAAAQKS 1122
Cdd:COG5022 915 LSSDLIENlefKTELIARLKKLLNNI-----DLEEGPSIEYVKLPELNK----LHEVESKLKETSEEYEdLLKKSTILVR 985
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1123 QQLSALqEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKrESEFRKDADEEKASLQKSISLTSALLtekdAEL 1202
Cdd:COG5022 986 EGNKAN-SELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQS-ASKIISSESTELSILKPLQKLKGLLL----LEN 1059
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1203 EKLRNEVTVLRGENATAKSLHSVVQTLESDKVKL-ELKVKNLELqlkeNKRQLSSSSGNTDAQAEEDERAQESQI--DFL 1279
Cdd:COG5022 1060 NQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV----TNRNLVKPANVLQFIVAQMIKLNLLQEisKFL 1135
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 23821025 1280 NSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1327
Cdd:COG5022 1136 SQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLY 1183
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
987-1126 |
8.82e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 987 SETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELK-----TQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 1061
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRaslsaAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 23821025 1062 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ----AAAQKSQQLS 1126
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRrlnvALAQRVQELN 193
|
|
| LXG |
pfam04740 |
LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of ... |
642-864 |
8.92e-03 |
|
LXG domain of WXG superfamily; This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.
Pssm-ID: 428100 [Multi-domain] Cd Length: 202 Bit Score: 39.15 E-value: 8.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 642 AKEMETMQAKLMKIIKEKEDSLEAVKARLdsaedQHLVEMEDTLNKlqEAEIKVKE-LEVLQAKYTEQ-SEVIGNFTSQL 719
Cdd:pfam04740 5 VSELIEGIDQTISELKELRDQLEKVKKAI-----EGLANLEDSLKG--KGGEAIKNfYSELHLPFLDFlQDFIDEYIEFL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 720 SAVKEKLLDLDAlrkaNSEGKLELETLRQQLEGAEKQIKNleternaesskansITKELQEKelvltgLQDSLNQVNQVK 799
Cdd:pfam04740 78 EQIKAALESFEP----SSNAFIDESFLEHELENGLKKAKE--------------KTEELTDE------INSILASVSDIV 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 23821025 800 ETLEKELQTLKEKFAStseeavsAQTRMQDTVNKLHQKEEQfnvLSSELEKLRENLTDMEAKFKE 864
Cdd:pfam04740 134 SLPKLSDSEVQDSLQK-------AKKKVKDTIEKLYDFDQE---QTSELSELEADLQALKTYVSE 188
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
997-1159 |
9.38e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 9.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 997 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKTETLASLEDTKQTNArLQNE 1075
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrLELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1076 LDTLKennlKTVEELNksKELLSVENQKmEEFKKEIETLKQAAAQKSQQLSALQEEnvkLAEELGRTRDEVtshQKLEEE 1155
Cdd:COG1579 98 IESLK----RRISDLE--DEILELMERI-EELEEELAELEAELAELEAELEEKKAE---LDEELAELEAEL---EELEAE 164
|
....
gi 23821025 1156 RSVL 1159
Cdd:COG1579 165 REEL 168
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1054-1277 |
9.39e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1054 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK----SQQLSALQ 1129
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERreelGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1130 E--------ENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSIsltsALLTEKDAE 1201
Cdd:COG3883 97 RsggsvsylDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALK----AELEAAKAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 23821025 1202 LEKLRNEVTVLrgenatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQID 1277
Cdd:COG3883 173 LEAQQAEQEAL-------------LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
994-1158 |
9.46e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 40.37 E-value: 9.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 994 EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKA----KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTN 1069
Cdd:pfam05262 188 EDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDAdkaqQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTS 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1070 ARLQNEldTLKENNLKTVEELNK-----SKELLSVENQKMEEFKKEIETLKQAAAQKSQQlsaLQEENVKLAEELGRTRD 1144
Cdd:pfam05262 268 SPKEDK--QVAENQKREIEKAQIeikknDEEALKAKDHKAFDLKQESKASEKEAEDKELE---AQKKREPVAEDLQKTKP 342
|
170
....*....|....
gi 23821025 1145 EVTSHQKLEEERSV 1158
Cdd:pfam05262 343 QVEAQPTSLNEDAI 356
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1053-1209 |
9.46e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 9.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1053 KEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKeietlKQAAAQKSQQLSALQEEN 1132
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE-----QLGNVRNNKEYEALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 23821025 1133 VKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEV 1209
Cdd:COG1579 99 ESLKRRISDLEDEI---LELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
834-1187 |
9.57e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 834 LHQKEEQFNVLSSELEKLR--ENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ-----LTKMNDELRL 906
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDqyTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQvlekeLKHLREALQQ 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 907 KERSVEELQLKLTKANEnASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKAS 986
Cdd:TIGR00618 238 TQQSHAYLTQKREAQEE-QLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 987 SETKTKHEEILQNLQKMLADTEDkLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTK 1066
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSS-IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKL 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 23821025 1067 QTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA----LQEENVKLAEELGRT 1142
Cdd:TIGR00618 396 QSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLekihLQESAQSLKEREQQL 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 23821025 1143 RDEVTSHQKLEEERSVLNNQLLEMKKRESEFRKDADEEKASLQKS 1187
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI 520
|
|
| |
