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Conserved domains on  [gi|13384872|ref|NP_079737|]
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cytochrome c oxidase assembly protein COX16 homolog, mitochondrial isoform 1 [Mus musculus]

Protein Classification

cytochrome c oxidase assembly protein COX16( domain architecture ID 10624380)

cytochrome c oxidase assembly protein COX16 is required for the assembly of the mitochondrial respiratory chain complex IV (CIV), also known as cytochrome c oxidase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COX16 pfam14138
Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which ...
 16-88 1.76e-26

Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which has been shown to be involved in assembly of cytochrome oxidase. Protein in this family are typically between 106 and 134 amino acids in length.


:

Pssm-ID: 464091  Cd Length: 79  Bit Score: 93.34  E-value: 1.76e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384872    16 LRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKiDPELEKKLKVN------KITLESEYEKIKD-STFENWKNIRGPRPWE 88
Cdd:pfam14138   1 LRFGLPFLLLIVGGSFGLSEFTQVRYERRDRK-VKELSEEEELGlkknrrKVDLEEEYYRLQGkVDIDDWENKRVPRPKE 79
 
Name Accession Description Interval E-value
COX16 pfam14138
Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which ...
 16-88 1.76e-26

Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which has been shown to be involved in assembly of cytochrome oxidase. Protein in this family are typically between 106 and 134 amino acids in length.


Pssm-ID: 464091  Cd Length: 79  Bit Score: 93.34  E-value: 1.76e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384872    16 LRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKiDPELEKKLKVN------KITLESEYEKIKD-STFENWKNIRGPRPWE 88
Cdd:pfam14138   1 LRFGLPFLLLIVGGSFGLSEFTQVRYERRDRK-VKELSEEEELGlkknrrKVDLEEEYYRLQGkVDIDDWENKRVPRPKE 79
 
Name Accession Description Interval E-value
COX16 pfam14138
Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which ...
 16-88 1.76e-26

Cytochrome c oxidase assembly protein COX16; This family represents homologs of COX16 which has been shown to be involved in assembly of cytochrome oxidase. Protein in this family are typically between 106 and 134 amino acids in length.


Pssm-ID: 464091  Cd Length: 79  Bit Score: 93.34  E-value: 1.76e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13384872    16 LRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKiDPELEKKLKVN------KITLESEYEKIKD-STFENWKNIRGPRPWE 88
Cdd:pfam14138   1 LRFGLPFLLLIVGGSFGLSEFTQVRYERRDRK-VKELSEEEELGlkknrrKVDLEEEYYRLQGkVDIDDWENKRVPRPKE 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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