NCBI Conserved Domain Search

Conserved domains on [gi|1936506579|ref|NP_113804|]

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zinc finger Ran-binding domain-containing protein 2 [Rattus norvegicus]

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 10650940)

zinc finger Ran-binding domain-containing protein; similar to human zinc finger Ran-binding domain-containing protein 2 (ZRANB2) which is a splice factor required for alternative splicing of TRA2B/SFRS10 transcripts and whose zinc finger domains bind single-stranded RNA, and to the zinc finger domain of human TAK1-binding protein 2 (TAB2) which binds Lys 63-linked polyubiquitin chains

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List of domain hits

Name

Accession

Description

Interval

E-value

ZnF_RBZ

smart00547

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...

67-91

1.25e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

Pssm-ID: 197784 [Multi-domain] Cd Length: 25 Bit Score: 41.53 E-value: 1.25e-05

                           10        20
                   ....*....|....*....|....*
gi 1936506579   67 NDWQCKTCSNVNWARRSECNMCNTP 91
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25

ZnF_RBZ

smart00547

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...

11-35

2.85e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

Pssm-ID: 197784 [Multi-domain] Cd Length: 25 Bit Score: 37.68 E-value: 2.85e-04

                           10        20
                   ....*....|....*....|....*
gi 1936506579   11 GDWICPdkKCGNVNFARRTSCNRCG 35
Cdd:smart00547   1 GDWECP--ACTFLNFASRSKCFACG 23

Name

Accession

Description

Interval

E-value

ZnF_RBZ

smart00547

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...

67-91

1.25e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

Pssm-ID: 197784 [Multi-domain] Cd Length: 25 Bit Score: 41.53 E-value: 1.25e-05

                           10        20
                   ....*....|....*....|....*
gi 1936506579   67 NDWQCKTCSNVNWARRSECNMCNTP 91
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25

ZnF_RBZ

smart00547

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...

11-35

2.85e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

Pssm-ID: 197784 [Multi-domain] Cd Length: 25 Bit Score: 37.68 E-value: 2.85e-04

                           10        20
                   ....*....|....*....|....*
gi 1936506579   11 GDWICPdkKCGNVNFARRTSCNRCG 35
Cdd:smart00547   1 GDWECP--ACTFLNFASRSKCFACG 23

zf-RanBP

pfam00641

Zn-finger in Ran binding protein and others;

65-93

3.38e-04

Zn-finger in Ran binding protein and others;

Pssm-ID: 395516 [Multi-domain] Cd Length: 30 Bit Score: 37.33 E-value: 3.38e-04

                          10        20
                  ....*....|....*....|....*....
gi 1936506579  65 SANDWQCKTCSNVNWARRSECNMCNTPKY 93
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29

zf-RanBP

pfam00641

Zn-finger in Ran binding protein and others;

9-38

9.96e-04

Zn-finger in Ran binding protein and others;

Pssm-ID: 395516 [Multi-domain] Cd Length: 30 Bit Score: 36.18 E-value: 9.96e-04

                          10        20        30
                  ....*....|....*....|....*....|
gi 1936506579   9 SDGDWICPdkKCGNVNFARRTSCNRCGREK 38
Cdd:pfam00641   1 REGDWDCS--KCLVQNFATSTKCVACQAPK 28

Name

Accession

Description

Interval

E-value

ZnF_RBZ

smart00547

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...

67-91

1.25e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

Pssm-ID: 197784 [Multi-domain] Cd Length: 25 Bit Score: 41.53 E-value: 1.25e-05

                           10        20
                   ....*....|....*....|....*
gi 1936506579   67 NDWQCKTCSNVNWARRSECNMCNTP 91
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25

ZnF_RBZ

smart00547

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...

11-35

2.85e-04

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

Pssm-ID: 197784 [Multi-domain] Cd Length: 25 Bit Score: 37.68 E-value: 2.85e-04

                           10        20
                   ....*....|....*....|....*
gi 1936506579   11 GDWICPdkKCGNVNFARRTSCNRCG 35
Cdd:smart00547   1 GDWECP--ACTFLNFASRSKCFACG 23

zf-RanBP

pfam00641

Zn-finger in Ran binding protein and others;

65-93

3.38e-04

Zn-finger in Ran binding protein and others;

Pssm-ID: 395516 [Multi-domain] Cd Length: 30 Bit Score: 37.33 E-value: 3.38e-04

                          10        20
                  ....*....|....*....|....*....
gi 1936506579  65 SANDWQCKTCSNVNWARRSECNMCNTPKY 93
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29

zf-RanBP

pfam00641

Zn-finger in Ran binding protein and others;

9-38

9.96e-04

Zn-finger in Ran binding protein and others;

Pssm-ID: 395516 [Multi-domain] Cd Length: 30 Bit Score: 36.18 E-value: 9.96e-04

                          10        20        30
                  ....*....|....*....|....*....|
gi 1936506579   9 SDGDWICPdkKCGNVNFARRTSCNRCGREK 38
Cdd:pfam00641   1 REGDWDCS--KCLVQNFATSTKCVACQAPK 28

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01