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Conserved domains on  [gi|20806105|ref|NP_115868|]
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large ribosomal subunit protein bL36m [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
66-103 5.15e-17

Ribosomal protein L36;


:

Pssm-ID: 459811  Cd Length: 38  Bit Score: 67.92  E-value: 5.15e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 20806105    66 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 103
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
66-103 5.15e-17

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 67.92  E-value: 5.15e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 20806105    66 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 103
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 67-102 1.17e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 57.06  E-value: 1.17e-12
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 20806105  67 KNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 102
Cdd:COG0257   2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 72-102 4.28e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 48.07  E-value: 4.28e-09
                         10        20        30
                 ....*....|....*....|....*....|.
gi 20806105   72 LKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 102
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
66-103 5.15e-17

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 67.92  E-value: 5.15e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 20806105    66 FKNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQM 103
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 67-102 1.17e-12

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 57.06  E-value: 1.17e-12
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 20806105  67 KNKTVLKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 102
Cdd:COG0257   2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 72-102 4.28e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 48.07  E-value: 4.28e-09
                         10        20        30
                 ....*....|....*....|....*....|.
gi 20806105   72 LKKRCKDCYLVKRRGRWYVYCKTHPRHKQRQ 102
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 67-102 3.01e-07

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 43.02  E-value: 3.01e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 20806105   67 KNKTVLKKRCKDCYLVKRRGRWYVYCKThPRHKQRQ 102
Cdd:PRK00465   2 KVRASVKKICEKCKVIKRKGVVRVICEN-PKHKQRQ 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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