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Conserved domains on  [gi|118200347|ref|NP_444461|]
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vomeronasal 1 receptor, C1 [Mus musculus]

Protein Classification

G protein-coupled receptor family protein( domain architecture ID 705710)

G protein-coupled receptor family protein is a seven-transmembrane G protein-coupled receptor (7TM-GPCR) family protein which typically transmits an extracellular signal into the cell by the conformational rearrangement of the 7TM helices and by the subsequent binding and activation of an intracellular heterotrimeric G protein; GPCR ligands include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
V1R super family cl17934
Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known ...
5-288 9.36e-72

Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known vomeronasal organ receptor families, the V1R family.


The actual alignment was detected with superfamily member pfam03402:

Pssm-ID: 460912  Cd Length: 292  Bit Score: 223.37  E-value: 9.36e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347    5 KNVLYFQAGLGVLANMVLLLFYIFI-ILGHRPKPTDLISCQLTFVHIIMVLTGGdILLTDLFELLNIENDLKCKTIFYIS 83
Cdd:pfam03402   4 GIIFFSEVGVGISANSILLLFHIFMfFTGHRLRPTDLIIGHLSLIHLLMLLTMG-IIAMDAFGSQGRWDDTTCKFLIYLH 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347   84 RVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSC 163
Cdd:pfam03402  83 RVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMSISSHLLLSIIATPNLTSSSFIYVTQSC 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  164 SLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSIS-HLRESPEKRATQTIVLLVSFFVVMYw 242
Cdd:pfam03402 163 SILPMSYSMQSLFSTLLASRDVFLIGLMVLSSGYMVALLCRHKKQAQHLHGTSlSPKASPEQRATRTILLLMSFFVVMY- 241
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 118200347  243 VDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRII 288
Cdd:pfam03402 242 ILDSIVSYSRTMFKNDSIFYCVQILVSHSYATVSPFVLISTEKRII 287
 
Name Accession Description Interval E-value
V1R pfam03402
Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known ...
5-288 9.36e-72

Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known vomeronasal organ receptor families, the V1R family.


Pssm-ID: 460912  Cd Length: 292  Bit Score: 223.37  E-value: 9.36e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347    5 KNVLYFQAGLGVLANMVLLLFYIFI-ILGHRPKPTDLISCQLTFVHIIMVLTGGdILLTDLFELLNIENDLKCKTIFYIS 83
Cdd:pfam03402   4 GIIFFSEVGVGISANSILLLFHIFMfFTGHRLRPTDLIIGHLSLIHLLMLLTMG-IIAMDAFGSQGRWDDTTCKFLIYLH 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347   84 RVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSC 163
Cdd:pfam03402  83 RVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMSISSHLLLSIIATPNLTSSSFIYVTQSC 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  164 SLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSIS-HLRESPEKRATQTIVLLVSFFVVMYw 242
Cdd:pfam03402 163 SILPMSYSMQSLFSTLLASRDVFLIGLMVLSSGYMVALLCRHKKQAQHLHGTSlSPKASPEQRATRTILLLMSFFVVMY- 241
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 118200347  243 VDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRII 288
Cdd:pfam03402 242 ILDSIVSYSRTMFKNDSIFYCVQILVSHSYATVSPFVLISTEKRII 287
7tm_V1R_pheromone cd13949
vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G ...
5-294 1.08e-71

vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily; This family represents vomeronasal type-1 receptors (V1Rs) that are specifically expressed in the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes and monkeys. The VNO detects pheromones, chemicals released from animals that can influence social and reproductive behaviors, such as male-male aggression or sexual mating, in other members of the same species. On the other hand, the olfactory epithelium, which contains olfactory receptor neurons inside the nasal cavity, is responsible for detecting odor molecules (smells). There are two types of vertebrate pheromones: (1) small volatile molecules such as 2-heptanone, a substance in the urine of both male and female that extends estrous cycle length in female mice; and (2) water-soluble molecules such as the major histocompatibility complex (HMC) class-I peptide, which can induce the pregnancy block effect, the tendency for female rodents to abort their pregnancies upon exposure to the scent of an unknown male. While V1Rs and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO, V2Rs (type-2 vomeronasal receptors) and G-alpha(o) protein are coexpressed in the basal layer of the VNO. Activation of V1R or V2R causes stimulation of phospholipase pathway, generating diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). V1Rs have a short N-terminal extracellular domain, whereas V2Rs contain a long N-terminal extracellular domain, which is believed to bind pheromones. Although V1Rs share the seven-transmembrane domain structure with V1Rs and olfactory receptors, they share little sequence similarity with each other.


Pssm-ID: 320087  Cd Length: 295  Bit Score: 223.30  E-value: 1.08e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347   5 KNVLYFQAGLGVLANMVLLLFYIFI-ILGHRPKPTDLISCQLTFVHIIMVLTGGdILLTDLFELLNIENDLKCKTIFYIS 83
Cdd:cd13949    4 RITFFSEVGVGISANSILLLFHIFMfFRGHRPRSTDLIIGHLSLIHLLLLLTMG-IIATDAFFSWGGWDDITCKFLIYLH 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  84 RVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSC 163
Cdd:cd13949   83 RVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMLISSHLLVSIIATPNLTSNNFIYVTQSC 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347 164 SLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSIS-HLRESPEKRATQTIVLLVSFFVVMYW 242
Cdd:cd13949  163 SILPMSYSMQSLFSTLLAFRDVFLIGLMLLSSGYMVALLHRHKKQVQHLHSTSlSPKASPEQRATQTILLLMSFFVVMYI 242
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 118200347 243 VDFIIsFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNL 294
Cdd:cd13949  243 LDSIV-FYSRTKFKNDSILYCVQIIVSHSYATVSPFVFLMTEKHIIKFLRSM 293
 
Name Accession Description Interval E-value
V1R pfam03402
Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known ...
5-288 9.36e-72

Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known vomeronasal organ receptor families, the V1R family.


Pssm-ID: 460912  Cd Length: 292  Bit Score: 223.37  E-value: 9.36e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347    5 KNVLYFQAGLGVLANMVLLLFYIFI-ILGHRPKPTDLISCQLTFVHIIMVLTGGdILLTDLFELLNIENDLKCKTIFYIS 83
Cdd:pfam03402   4 GIIFFSEVGVGISANSILLLFHIFMfFTGHRLRPTDLIIGHLSLIHLLMLLTMG-IIAMDAFGSQGRWDDTTCKFLIYLH 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347   84 RVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSC 163
Cdd:pfam03402  83 RVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMSISSHLLLSIIATPNLTSSSFIYVTQSC 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  164 SLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSIS-HLRESPEKRATQTIVLLVSFFVVMYw 242
Cdd:pfam03402 163 SILPMSYSMQSLFSTLLASRDVFLIGLMVLSSGYMVALLCRHKKQAQHLHGTSlSPKASPEQRATRTILLLMSFFVVMY- 241
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 118200347  243 VDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRII 288
Cdd:pfam03402 242 ILDSIVSYSRTMFKNDSIFYCVQILVSHSYATVSPFVLISTEKRII 287
7tm_V1R_pheromone cd13949
vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G ...
5-294 1.08e-71

vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily; This family represents vomeronasal type-1 receptors (V1Rs) that are specifically expressed in the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes and monkeys. The VNO detects pheromones, chemicals released from animals that can influence social and reproductive behaviors, such as male-male aggression or sexual mating, in other members of the same species. On the other hand, the olfactory epithelium, which contains olfactory receptor neurons inside the nasal cavity, is responsible for detecting odor molecules (smells). There are two types of vertebrate pheromones: (1) small volatile molecules such as 2-heptanone, a substance in the urine of both male and female that extends estrous cycle length in female mice; and (2) water-soluble molecules such as the major histocompatibility complex (HMC) class-I peptide, which can induce the pregnancy block effect, the tendency for female rodents to abort their pregnancies upon exposure to the scent of an unknown male. While V1Rs and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO, V2Rs (type-2 vomeronasal receptors) and G-alpha(o) protein are coexpressed in the basal layer of the VNO. Activation of V1R or V2R causes stimulation of phospholipase pathway, generating diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). V1Rs have a short N-terminal extracellular domain, whereas V2Rs contain a long N-terminal extracellular domain, which is believed to bind pheromones. Although V1Rs share the seven-transmembrane domain structure with V1Rs and olfactory receptors, they share little sequence similarity with each other.


Pssm-ID: 320087  Cd Length: 295  Bit Score: 223.30  E-value: 1.08e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347   5 KNVLYFQAGLGVLANMVLLLFYIFI-ILGHRPKPTDLISCQLTFVHIIMVLTGGdILLTDLFELLNIENDLKCKTIFYIS 83
Cdd:cd13949    4 RITFFSEVGVGISANSILLLFHIFMfFRGHRPRSTDLIIGHLSLIHLLLLLTMG-IIATDAFFSWGGWDDITCKFLIYLH 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  84 RVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSC 163
Cdd:cd13949   83 RVLRGLSLCTTCLLSVLQAITLSPRSSCLAKFKHKSPHHISGAFLFLWVLYMLISSHLLVSIIATPNLTSNNFIYVTQSC 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347 164 SLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSIS-HLRESPEKRATQTIVLLVSFFVVMYW 242
Cdd:cd13949  163 SILPMSYSMQSLFSTLLAFRDVFLIGLMLLSSGYMVALLHRHKKQVQHLHSTSlSPKASPEQRATQTILLLMSFFVVMYI 242
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 118200347 243 VDFIIsFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNL 294
Cdd:cd13949  243 LDSIV-FYSRTKFKNDSILYCVQIIVSHSYATVSPFVFLMTEKHIIKFLRSM 293
7tm_GPCRs cd14964
seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary ...
10-284 4.55e-07

seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary model represents the seven-transmembrane (7TM) receptors, often referred to as G protein-coupled receptors (GPCRs), which transmit physiological signals from the outside of the cell to the inside via G proteins. GPCRs constitute the largest known superfamily of transmembrane receptors across the three kingdoms of life that respond to a wide variety of extracellular stimuli including peptides, lipids, neurotransmitters, amino acids, hormones, and sensory stimuli such as light, smell and taste. All GPCRs share a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. However, some 7TM receptors, such as the type 1 microbial rhodopsins, do not activate G proteins. Based on sequence similarity, GPCRs can be divided into six major classes: class A (the rhodopsin-like family), class B (the Methuselah-like, adhesion and secretin-like receptor family), class C (the metabotropic glutamate receptor family), class D (the fungal mating pheromone receptors), class E (the cAMP receptor family), and class F (the frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


Pssm-ID: 410628 [Multi-domain]  Cd Length: 267  Bit Score: 50.12  E-value: 4.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  10 FQAGLGVLANmvLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGL 89
Cdd:cd14964    7 LLTCLGLLGN--LLVLLSLVRLRKRPRSTRLLLASLAACDLLASLVVLVLFFLLGLTEASSRPQALCYLIYLLWYGANLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  90 SICTTCLLSVFQAVTIspnTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKScsllpmN 169
Cdd:cd14964   85 SIWTTLVLTYHRYFAL---CGPLKYTRLSSPGKTRVIILGCWGVSLLLSIPPLVGKGAIPRYNTLTGSCYLIC------T 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347 170 IIIRGFIFtistsRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFI--I 247
Cdd:cd14964  156 TIYLTWGF-----LLVSFLLPLVAFLVIFSRIVLRLRRRVRAIRSAASLNTDKNLKATKSLLILVITFLLCWLPFSIvfI 230
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 118200347 248 SFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSD 284
Cdd:cd14964  231 LHALVAAGQGLNLLSILANLLAVLASTLNPFIYCLGN 267
7tm_classA_rhodopsin-like cd00637
rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor ...
14-279 9.07e-04

rhodopsin receptor-like class A family of the seven-transmembrane G protein-coupled receptor superfamily; Class A rhodopsin-like receptors constitute about 90% of all GPCRs. The class A GPCRs include the light-sensitive rhodopsin as well as receptors for biogenic amines, lipids, nucleotides, odorants, peptide hormones, and a variety of other ligands. All GPCRs have a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. Based on sequence similarity, GPCRs can be divided into six major classes: class A (rhodopsin-like family), class B (Methuselah-like, adhesion and secretin-like receptor family), class C (metabotropic glutamate receptor family), class D (fungal mating pheromone receptors), class E (cAMP receptor family), and class F (frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


Pssm-ID: 410626 [Multi-domain]  Cd Length: 275  Bit Score: 40.35  E-value: 9.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  14 LGVLANmvLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICT 93
Cdd:cd00637   11 VGLVGN--LLVILVILRNRRLRTVTNYFILNLAVADLLVGLLVIPFSLVSLLLGRWWFGDALCKLLGFLQSVSLLASILT 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347  94 TCLLSV--FQAVTispnTSLMAKFKQKLKKYMACVfLCIWSFNLAFStnrIFYVGGFTNVSETNQMQVTKSCSLLPMNII 171
Cdd:cd00637   89 LTAISVdrYLAIV----HPLRYRRRFTRRRAKLLI-ALIWLLSLLLA---LPPLLGWGVYDYGGYCCCCLCWPDLTLSKA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118200347 172 IRGFIFTISTsrdVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESP--EKRATQTIVLLVSFFVVM---YWVDFI 246
Cdd:cd00637  161 YTIFLFVLLF---LLPLLVIIVCYVRIFRKLRRHRRRIRSSSSNSSRRRRRrrERKVTKTLLIVVVVFLLCwlpYFILLL 237
                        250       260       270
                 ....*....|....*....|....*....|...
gi 118200347 247 ISFTSDMIWMYDPLILTVQKFMMYAYPTITPLV 279
Cdd:cd00637  238 LDVFGPDPSPLPRILYFLALLLAYLNSAINPII 270
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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