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Conserved domains on  [gi|1937369729|ref|NP_446066|]
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lens epithelial cell protein LEP503 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LEP503 super family cl21086
Lens epithelial cell protein LEP503; This protein may be involved in lens epithelial cell ...
 1-61 5.63e-22

Lens epithelial cell protein LEP503; This protein may be involved in lens epithelial cell differentiation.


The actual alignment was detected with superfamily member pfam15221:

Pssm-ID: 373655  Cd Length: 69  Bit Score: 79.80  E-value: 5.63e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1937369729  1 MKPPMQPLTQALPFSLRDALQGTGLRVPVIKMGTGWE--------GMYRTLKEVAYILLCCWCIKELLD 61
Cdd:pfam15221  1 MQPQTQPLAHALPFSFGRALGDAALGTPVMKLGTGKEllggnmayGLIQSLKECAYFILCCWCIKEILD 69
 
Name Accession Description Interval E-value
LEP503 pfam15221
Lens epithelial cell protein LEP503; This protein may be involved in lens epithelial cell ...
 1-61 5.63e-22

Lens epithelial cell protein LEP503; This protein may be involved in lens epithelial cell differentiation.


Pssm-ID: 373655  Cd Length: 69  Bit Score: 79.80  E-value: 5.63e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1937369729  1 MKPPMQPLTQALPFSLRDALQGTGLRVPVIKMGTGWE--------GMYRTLKEVAYILLCCWCIKELLD 61
Cdd:pfam15221  1 MQPQTQPLAHALPFSFGRALGDAALGTPVMKLGTGKEllggnmayGLIQSLKECAYFILCCWCIKEILD 69
 
Name Accession Description Interval E-value
LEP503 pfam15221
Lens epithelial cell protein LEP503; This protein may be involved in lens epithelial cell ...
 1-61 5.63e-22

Lens epithelial cell protein LEP503; This protein may be involved in lens epithelial cell differentiation.


Pssm-ID: 373655  Cd Length: 69  Bit Score: 79.80  E-value: 5.63e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1937369729  1 MKPPMQPLTQALPFSLRDALQGTGLRVPVIKMGTGWE--------GMYRTLKEVAYILLCCWCIKELLD 61
Cdd:pfam15221  1 MQPQTQPLAHALPFSFGRALGDAALGTPVMKLGTGKEllggnmayGLIQSLKECAYFILCCWCIKEILD 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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