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Conserved domains on  [gi|193205045|ref|NP_497069|]
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Receptor expression-enhancing protein [Caenorhabditis elegans]

Protein Classification

HVA22/TB2/DP1 family protein( domain architecture ID 139951)

HVA22/TB2/DP1 family protein similar to Debaryomyces hansenii protein YOP1 that is required to generate and maintain the structure of the tubular endoplasmic reticulum network and the vacuole

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TB2_DP1_HVA22 super family cl19882
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 132-182 6.45e-03

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


The actual alignment was detected with superfamily member pfam03134:

Pssm-ID: 473245  Cd Length: 77  Bit Score: 34.79  E-value: 6.45e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 193205045  132 PTFMTVTAISSTSSYENPSFLKnhqdffvrYWTVYAVFVTGESFLSSLIHW 182
Cdd:pfam03134   1 PAYASYKALESPDKDDDTQWLT--------YWVVFGFFTLVESFADFLLSW 43
 
Name Accession Description Interval E-value
TB2_DP1_HVA22 pfam03134
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 132-182 6.45e-03

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


Pssm-ID: 460820  Cd Length: 77  Bit Score: 34.79  E-value: 6.45e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 193205045  132 PTFMTVTAISSTSSYENPSFLKnhqdffvrYWTVYAVFVTGESFLSSLIHW 182
Cdd:pfam03134   1 PAYASYKALESPDKDDDTQWLT--------YWVVFGFFTLVESFADFLLSW 43
 
Name Accession Description Interval E-value
TB2_DP1_HVA22 pfam03134
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 132-182 6.45e-03

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


Pssm-ID: 460820  Cd Length: 77  Bit Score: 34.79  E-value: 6.45e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 193205045  132 PTFMTVTAISSTSSYENPSFLKnhqdffvrYWTVYAVFVTGESFLSSLIHW 182
Cdd:pfam03134   1 PAYASYKALESPDKDDDTQWLT--------YWVVFGFFTLVESFADFLLSW 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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