NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|71985325|ref|NP_497936|]
View 

Enhancer of rudimentary homolog 2 [Caenorhabditis elegans]

Protein Classification

ER domain-containing protein( domain architecture ID 10471567)

ER domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ER pfam01133
Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is ...
 5-100 6.98e-48

Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene.


:

Pssm-ID: 460078  Cd Length: 98  Bit Score: 148.09  E-value: 6.98e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71985325     5 SHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKK--SAAPVTYDVSQVYEFLDKLSDVSMMIFNRETGQYIG 82
Cdd:pfam01133   1 SHTILLVQPSKNPESRTYSDYESVNQAMEGVCKIYEEHLKEKnpNLPTITYDISDLFDFIDSLADLSCLVYQKSTNTYAP 80

                          90
                  ....*....|....*...
gi 71985325    83 RTRAWIKQQVYEMMRGRC 100
Cdd:pfam01133  81 HDKEWIKEKIYELLRKQA 98
 
Name Accession Description Interval E-value
ER pfam01133
Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is ...
 5-100 6.98e-48

Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene.


Pssm-ID: 460078  Cd Length: 98  Bit Score: 148.09  E-value: 6.98e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71985325     5 SHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKK--SAAPVTYDVSQVYEFLDKLSDVSMMIFNRETGQYIG 82
Cdd:pfam01133   1 SHTILLVQPSKNPESRTYSDYESVNQAMEGVCKIYEEHLKEKnpNLPTITYDISDLFDFIDSLADLSCLVYQKSTNTYAP 80

                          90
                  ....*....|....*...
gi 71985325    83 RTRAWIKQQVYEMMRGRC 100
Cdd:pfam01133  81 HDKEWIKEKIYELLRKQA 98
 
Name Accession Description Interval E-value
ER pfam01133
Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is ...
 5-100 6.98e-48

Enhancer of rudimentary; Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene.


Pssm-ID: 460078  Cd Length: 98  Bit Score: 148.09  E-value: 6.98e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71985325     5 SHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKK--SAAPVTYDVSQVYEFLDKLSDVSMMIFNRETGQYIG 82
Cdd:pfam01133   1 SHTILLVQPSKNPESRTYSDYESVNQAMEGVCKIYEEHLKEKnpNLPTITYDISDLFDFIDSLADLSCLVYQKSTNTYAP 80

                          90
                  ....*....|....*...
gi 71985325    83 RTRAWIKQQVYEMMRGRC 100
Cdd:pfam01133  81 HDKEWIKEKIYELLRKQA 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH