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Conserved domains on  [gi|17540280|ref|NP_502930|]
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C3H1-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 13416353)

zinc finger CCCH domain-containing protein similar to Arabidopsis thaliana zinc finger CCCH domain-containing protein 28

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
130-154 3.78e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 3.78e-07
                          10        20
                  ....*....|....*....|....*
gi 17540280   130 YKTVLCNNFSTTGHCKYGIRCQFIH 154
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
CTH1 super family cl34885
CCCH-type Zn-finger protein [General function prediction only];
44-158 3.13e-06

CCCH-type Zn-finger protein [General function prediction only];


The actual alignment was detected with superfamily member COG5063:

Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 46.58  E-value: 3.13e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540280  44 FSLFVNQNETEQKLFSNQSLANRDPCTIPDE----LHQEMKSLKKKEEAFKT------SLC-GFHRRGQkCAY---GEKC 109
Cdd:COG5063 173 FISLPLTDINLQPLSQRKPKSGKNCTSYTLGkesdAHPHDELIYQKQEQNKPlyktnpELCeSFTRKGT-CPYwisGVKC 251

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 17540280 110 KFAHSVHELRFPQTKRNHRNYKTVLCNNFSTTGHCKYGIRCQFIHRSMN 158
Cdd:COG5063 252 QFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
130-154 3.78e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 3.78e-07
                          10        20
                  ....*....|....*....|....*
gi 17540280   130 YKTVLCNNFSTTGHCKYGIRCQFIH 154
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
44-158 3.13e-06

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 46.58  E-value: 3.13e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540280  44 FSLFVNQNETEQKLFSNQSLANRDPCTIPDE----LHQEMKSLKKKEEAFKT------SLC-GFHRRGQkCAY---GEKC 109
Cdd:COG5063 173 FISLPLTDINLQPLSQRKPKSGKNCTSYTLGkesdAHPHDELIYQKQEQNKPlyktnpELCeSFTRKGT-CPYwisGVKC 251

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 17540280 110 KFAHSVHELRFPQTKRNHRNYKTVLCNNFSTTGHCKYGIRCQFIHRSMN 158
Cdd:COG5063 252 QFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
89-115 5.92e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 41.41  E-value: 5.92e-06
                          10        20
                  ....*....|....*....|....*..
gi 17540280    89 FKTSLCGFHRRGQKCAYGEKCKFAHSV 115
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
ZnF_C3H1 smart00356
zinc finger;
129-154 4.60e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 39.15  E-value: 4.60e-05
                           10        20
                   ....*....|....*....|....*.
gi 17540280    129 NYKTVLCNNFsTTGHCKYGIRCQFIH 154
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
89-114 1.16e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.30  E-value: 1.16e-03
                           10        20
                   ....*....|....*....|....*.
gi 17540280     89 FKTSLCGFHRRGQkCAYGEKCKFAHS 114
Cdd:smart00356   2 YKTELCKFFKRGY-CPRGDRCKFAHP 26
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
130-154 3.78e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 3.78e-07
                          10        20
                  ....*....|....*....|....*
gi 17540280   130 YKTVLCNNFSTTGHCKYGIRCQFIH 154
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
44-158 3.13e-06

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 46.58  E-value: 3.13e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540280  44 FSLFVNQNETEQKLFSNQSLANRDPCTIPDE----LHQEMKSLKKKEEAFKT------SLC-GFHRRGQkCAY---GEKC 109
Cdd:COG5063 173 FISLPLTDINLQPLSQRKPKSGKNCTSYTLGkesdAHPHDELIYQKQEQNKPlyktnpELCeSFTRKGT-CPYwisGVKC 251

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 17540280 110 KFAHSVHELRFPQTKRNHRNYKTVLCNNFSTTGHCKYGIRCQFIHRSMN 158
Cdd:COG5063 252 QFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
89-115 5.92e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 41.41  E-value: 5.92e-06
                          10        20
                  ....*....|....*....|....*..
gi 17540280    89 FKTSLCGFHRRGQKCAYGEKCKFAHSV 115
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
84-154 6.13e-06

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 45.81  E-value: 6.13e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17540280  84 KKEEAFKTSLCGFHRRGQKCAYGEKCKFAHSVHELRFPQTkrnHRNYKTVLCNNFSTTGHCKYGIRCQFIH 154
Cdd:COG5063 108 KPYGLYKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQT---HPKYKTESLEVFINPGYVPYSKRCCFIS 175
ZnF_C3H1 smart00356
zinc finger;
129-154 4.60e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 39.15  E-value: 4.60e-05
                           10        20
                   ....*....|....*....|....*.
gi 17540280    129 NYKTVLCNNFsTTGHCKYGIRCQFIH 154
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAH 25
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
83-162 7.69e-05

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 42.35  E-value: 7.69e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17540280  83 KKKEEAFKTSLCGFHRRGQKCAYGEKCKFAHSVHELRFPQTKRNHRNYKTVlCNNFSTTGHCKYGIRCQFIHRSMNSTSS 162
Cdd:COG5063 266 KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGP-CRTRAKGGAFPSGGAVCKSFDKKNLDFS 344
ZnF_C3H1 smart00356
zinc finger;
89-114 1.16e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 35.30  E-value: 1.16e-03
                           10        20
                   ....*....|....*....|....*.
gi 17540280     89 FKTSLCGFHRRGQkCAYGEKCKFAHS 114
Cdd:smart00356   2 YKTELCKFFKRGY-CPRGDRCKFAHP 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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