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Conserved domains on  [gi|17559636|ref|NP_506546|]
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PBPe domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2700 super family cl12492
Protein of unknown function (DUF2700); This family of proteins with unknown function appears ...
 20-105 8.02e-10

Protein of unknown function (DUF2700); This family of proteins with unknown function appears to be restricted to Caenorhabditis elegans.


The actual alignment was detected with superfamily member pfam10912:

Pssm-ID: 371296  Cd Length: 136  Bit Score: 55.72  E-value: 8.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17559636    20 YSLVGLLTF-SYFVCAEPRILIRANNFVHLALHAIVLFGVYNNTERSLRWSANIVYFYVLLYFAIFLVFPVMLASCKASG 98
Cdd:pfam10912   2 LAIFGIIRSgAQLLYSPDSWFTALFLFISLLLNLLLLFGALKNNEKALKWAQRVSFIALILAFLQFLIVPVIFASFVASG 81


                  ....*..
gi 17559636    99 ILPGITE 105
Cdd:pfam10912  82 YADNLYN 88
 
Name Accession Description Interval E-value
DUF2700 pfam10912
Protein of unknown function (DUF2700); This family of proteins with unknown function appears ...
 20-105 8.02e-10

Protein of unknown function (DUF2700); This family of proteins with unknown function appears to be restricted to Caenorhabditis elegans.


Pssm-ID: 371296  Cd Length: 136  Bit Score: 55.72  E-value: 8.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17559636    20 YSLVGLLTF-SYFVCAEPRILIRANNFVHLALHAIVLFGVYNNTERSLRWSANIVYFYVLLYFAIFLVFPVMLASCKASG 98
Cdd:pfam10912   2 LAIFGIIRSgAQLLYSPDSWFTALFLFISLLLNLLLLFGALKNNEKALKWAQRVSFIALILAFLQFLIVPVIFASFVASG 81


                  ....*..
gi 17559636    99 ILPGITE 105
Cdd:pfam10912  82 YADNLYN 88
 
Name Accession Description Interval E-value
DUF2700 pfam10912
Protein of unknown function (DUF2700); This family of proteins with unknown function appears ...
 20-105 8.02e-10

Protein of unknown function (DUF2700); This family of proteins with unknown function appears to be restricted to Caenorhabditis elegans.


Pssm-ID: 371296  Cd Length: 136  Bit Score: 55.72  E-value: 8.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17559636    20 YSLVGLLTF-SYFVCAEPRILIRANNFVHLALHAIVLFGVYNNTERSLRWSANIVYFYVLLYFAIFLVFPVMLASCKASG 98
Cdd:pfam10912   2 LAIFGIIRSgAQLLYSPDSWFTALFLFISLLLNLLLLFGALKNNEKALKWAQRVSFIALILAFLQFLIVPVIFASFVASG 81


                  ....*..
gi 17559636    99 ILPGITE 105
Cdd:pfam10912  82 YADNLYN 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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