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Conserved domains on  [gi|17737403|ref|NP_523529|]
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DNA replication-related element factor, isoform A [Drosophila melanogaster]

Protein Classification

zinc finger BED domain-containing protein( domain architecture ID 10502499)

zinc finger BED domain-containing protein (ZBED) may function as a transcriptional regulator

Gene Ontology:  GO:0046872|GO:0003677
PubMed:  10973053|23533661

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
35-84 1.49e-11

BED zinc finger;


:

Pssm-ID: 427043  Cd Length: 44  Bit Score: 59.30  E-value: 1.49e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 17737403    35 SVYWRYFGFPSndnnevITKQNVVCIKCHKVLTNHGNTTNLRAHLQHRHK 84
Cdd:pfam02892   1 SKVWKYFRELP------LDETKAVCRYCGKILSRGGGTSNLIRHLRRKHP 44
 
Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
35-84 1.49e-11

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 59.30  E-value: 1.49e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 17737403    35 SVYWRYFGFPSndnnevITKQNVVCIKCHKVLTNHGNTTNLRAHLQHRHK 84
Cdd:pfam02892   1 SKVWKYFRELP------LDETKAVCRYCGKILSRGGGTSNLIRHLRRKHP 44
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 36-86 6.29e-09

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 52.04  E-value: 6.29e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 17737403     36 VYWRYFGFPSNDNNeviTKQNVVCIKCHKVL--TNHGNTTNLRAHLQHRHKDL 86
Cdd:smart00614   1 KVWKHFTLILEKDN---GKQRAKCKYCGKKLsrSSKGGTSNLRRHLRRKHPAR 50
 
Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
35-84 1.49e-11

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 59.30  E-value: 1.49e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 17737403    35 SVYWRYFGFPSndnnevITKQNVVCIKCHKVLTNHGNTTNLRAHLQHRHK 84
Cdd:pfam02892   1 SKVWKYFRELP------LDETKAVCRYCGKILSRGGGTSNLIRHLRRKHP 44
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 36-86 6.29e-09

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 52.04  E-value: 6.29e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 17737403     36 VYWRYFGFPSNDNNeviTKQNVVCIKCHKVL--TNHGNTTNLRAHLQHRHKDL 86
Cdd:smart00614   1 KVWKHFTLILEKDN---GKQRAKCKYCGKKLsrSSKGGTSNLRRHLRRKHPAR 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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