|
Name |
Accession |
Description |
Interval |
E-value |
| BetA |
COG2303 |
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ... |
57-617 |
0e+00 |
|
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 441878 [Multi-domain] Cd Length: 531 Bit Score: 556.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 57 DSEYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPER-LVMDVPI-VAHFLQLGEMNWKYRTQPSDHaclaMNNNRC 134
Cdd:COG2303 2 LEEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGRDDdPLIRMPAgYAKLLGNPRYDWRYETEPQPG----LNGRRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 135 NWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEALGNPGWSFKDVLPYFKKYEgsSVPDAEEDYVGRNGPVKVSYVNWRSKI 214
Cdd:COG2303 78 YWPRGKVLGGSSSINGMIYVRGQPEDFDLWAQLGNQGWGYDDVLPYFKRAE--DNERGADAYHGRSGPLPVSDPPLPNPL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 215 AEAFVDAAQQDGLKY-RDYNGRIQNGVAFLHTTTRNSTRWSSNRAYLYPLKgKRSNLHVRKNALVTKVLIDpqTKTAYGI 293
Cdd:COG2303 156 SDAFIEAAEELGIPRaDDFNGGACEGCGFCQVTCRNGARWSAARAYLPPAL-KRPNLTVRTGALVTRILFD--GGRATGV 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 294 MVQTEGRMQKILARKEVIVSAGAINTPQLLMLSGVGPAKHLREVGIKPLADL-AVGYNLQDHTAPAVTFTTNATSLKFED 372
Cdd:COG2303 233 EYRDDGEEHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLpGVGRNLQDHLEVSVVFRFKEPVTLNKS 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 373 FSDPTLINRF-NRMEGPYGSPGGcEAIAFWDLDHERDedgWPDIELFLVGGSMSsnpaisRAFGLKKSIYDtlfaeiedk 451
Cdd:COG2303 313 LRKARIGLQYlLTRSGPLTSNVA-EAGGFFRSDPGLE---RPDLQFHFLPLGLT------PRWGKKALHDG--------- 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 452 slNAFMIFPMILRPKSRGRIMLKSSDPFKYPLIHANYFAHPYDVDISVRGLLKAISLMEQRGMEKINARlwekkiPTCKQ 531
Cdd:COG2303 374 --HGFTAHVEQLRPESRGRVTLDSADPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGE------EILPG 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 532 HPYKSWAYWAcYVRHFTFTIYHYSGTAKMGPksDRAAVVDHRLRVHGIKNLRVADASIMPEIMSGHPNGPVFMIAEKAAD 611
Cdd:COG2303 446 PDVQSDEELA-FIRARAYTIYHPVGTCRMGT--DPDSVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKAAD 522
|
....*.
gi 24642039 612 MIKQDH 617
Cdd:COG2303 523 MILGDY 528
|
|
| PRK02106 |
PRK02106 |
choline dehydrogenase; Validated |
57-614 |
7.57e-148 |
|
choline dehydrogenase; Validated
Pssm-ID: 235000 [Multi-domain] Cd Length: 560 Bit Score: 438.88 E-value: 7.57e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 57 DSEYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVmDVPI-----VAHFLQLGEMNWKYRTQPSDHaclaMNN 131
Cdd:PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRW-DFFIqmpaaLAFPLQGKRYNWAYETEPEPH----MNN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 132 NRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEAL-GNPGWSFKDVLPYFKKYEGSSVPdaEEDYVGRNGPVKVSyvnw 210
Cdd:PRK02106 78 RRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELpGLEGWSYADCLPYFKKAETRDGG--EDDYRGGDGPLSVT---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 211 RSKIA-----EAFVDAAQQDGLKY-RDYNGRIQNGVAFLHTTTRNSTRWSSNRAYLYPLKgKRSNLHVRKNALVTKVLID 284
Cdd:PRK02106 152 RGKPGtnplfQAFVEAGVQAGYPRtDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPAL-KRPNLTIVTHALTDRILFE 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 285 PqtKTAYGIMVQTEGRMQKILARKEVIVSAGAINTPQLLMLSGVGPAKHLREVGIKPLADLA-VGYNLQDHTAPAVTFT- 362
Cdd:PRK02106 231 G--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPgVGENLQDHLEVYIQYEc 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 363 TNATSLkfedFSDPTLINR--------FNRmEGPyGSPGGCEAIAFWdldHERDEDGWPDIEL-FLvggsmssnPAISRa 433
Cdd:PRK02106 309 KQPVSL----YPALKWWNKpkigaewlFTG-TGL-GASNHFEAGGFI---RSRAGVDWPNIQYhFL--------PVAIR- 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 434 fglkksiYDTLFAEIEDkslnAFM--IFPMilRPKSRGRIMLKSSDPFKYPLIHANYFAHPYDvdisVRGLLKAISL--- 508
Cdd:PRK02106 371 -------YDGSNAVKGH----GFQahVGPM--RSPSRGSVKLKSADPRAHPSILFNYMSTEQD----WREFRDAIRLtre 433
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 509 -MEQRGMEKINARlwekKI-PTCKqhpYKSWAYWACYVRHFTFTIYHYSGTAKMGPksDRAAVVDHRLRVHGIKNLRVAD 586
Cdd:PRK02106 434 iMAQPALDPYRGR----EIsPGAD---VQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVD 504
|
570 580
....*....|....*....|....*...
gi 24642039 587 ASIMPEIMSGHPNGPVFMIAEKAADMIK 614
Cdd:PRK02106 505 ASIMPTITNGNLNAPTIMIAEKAADLIR 532
|
|
| Rv0697 |
TIGR03970 |
dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the ... |
61-613 |
3.94e-82 |
|
dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.
Pssm-ID: 274888 [Multi-domain] Cd Length: 487 Bit Score: 266.68 E-value: 3.94e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 61 DFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVMDVP-IVAHFLQL-----GEMNWKYRTQ----PSDHACLAmn 130
Cdd:TIGR03970 2 DVLIVGAGSAGSVLAARLSEDPSCTVTVLEAGPGYRDPSRLPaQLTDGLRLpigpaSPVVWRYGVEltdgPRRASQIV-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 131 nnrcnwpRGKVMGGSSVLNYMMYTRGNRRDYDRWealGNPGWSFKDVLPYFKKYEGSSvpDAEEDYVGRNGPVKVSYVNW 210
Cdd:TIGR03970 80 -------RGRVLGGSGAVNGGYFCRALPADFDAW---PIPGWSWDDVLPHFRAIETDL--DFDGPLHGTAGPIPVRRTAE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 211 RSKIAEAFVDAAQQDGLKYR-DYNG---RIQNGVAFLHTTTRNSTRWSSNRAYLYPlKGKRSNLHVRKNALVTKVLIdpQ 286
Cdd:TIGR03970 148 LDGISAAFVAAALGAGFGWIaDLNGsgpGLPGGVGAVPLNVDGGRRVSTAVAYLLP-ALKRPNLTVEADTRVVRILF--S 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 287 TKTAYGIMVQTEGRMQKILARKeVIVSAGAINTPQLLMLSGVGPAKHLREVGIKPLADLAVGYNLQDH------TAPAVT 360
Cdd:TIGR03970 225 GTRAVGVEVLGDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLPVGSDFVDHpewvlpYRWRPT 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 361 FTTNATSLKFEdfsdpTLINRFNRMEGPYGSPggceaiaFWDLDHERDEDgWPDIELFLvggsmssnpaisrafglkksi 440
Cdd:TIGR03970 304 HDRPPTSPVLE-----TVLNTADIEIRPYTAG-------FTALVPGSPRD-DPHLGVAL--------------------- 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 441 ydtlfaeiedkslnafmifpmiLRPKSRGRIMLKSSDPFKYPLIHANYFAHPYDVDISVRGLLKAISLMEQrgmekinar 520
Cdd:TIGR03970 350 ----------------------MRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGS--------- 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 521 lwekkIPTCKQHPYKSWAYWACYVRHFTFTIYHYSGTAKMGPKSDRAAVVDHRLRVHGIKNLRVADASIMPEIMSGHPNG 600
Cdd:TIGR03970 399 -----PELGPLLEPAVREGEASWVLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHA 473
|
570
....*....|...
gi 24642039 601 PVFMIAEKAADMI 613
Cdd:TIGR03970 474 TAVMVAERAAEFL 486
|
|
| GMC_oxred_N |
pfam00732 |
GMC oxidoreductase; This family of proteins bind FAD as a cofactor. |
125-356 |
1.38e-50 |
|
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
Pssm-ID: 366272 [Multi-domain] Cd Length: 218 Bit Score: 174.39 E-value: 1.38e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 125 ACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEAL-GNPGWSFKDVLPYFKKYEGssvpdaeedyvgrngPV 203
Cdd:pfam00732 10 SAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEfGLEGWGYDDYLPYMDKVEG---------------PL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 204 KVS----YVNWRSKiaeAFVDAAQQDGLKY----RDYNGriQNGVAFLHTTTRNSTRWSSNRAYLYPLKGKrsNLHVRKN 275
Cdd:pfam00732 75 GVTtkgiEESPLNQ---ALLKAAEELGYPVeavpRNSNG--CHYCGFCGLGCPTGAKQSTARTWLRPALER--NLRILTG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 276 ALVTKVLIDPQTKTAYGIMVQT--EGRMQKILARKEVIVSAGAINTPQLLMLSGVGPAKHlrevgikpladlAVGYNLQD 353
Cdd:pfam00732 148 AKAEKIIILGRGGRAVGVEARDggGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQL 215
|
...
gi 24642039 354 HTA 356
Cdd:pfam00732 216 HPV 218
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| BetA |
COG2303 |
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ... |
57-617 |
0e+00 |
|
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 441878 [Multi-domain] Cd Length: 531 Bit Score: 556.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 57 DSEYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPER-LVMDVPI-VAHFLQLGEMNWKYRTQPSDHaclaMNNNRC 134
Cdd:COG2303 2 LEEYDYVIVGAGSAGCVLANRLSEDAGLRVLLLEAGGRDDdPLIRMPAgYAKLLGNPRYDWRYETEPQPG----LNGRRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 135 NWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEALGNPGWSFKDVLPYFKKYEgsSVPDAEEDYVGRNGPVKVSYVNWRSKI 214
Cdd:COG2303 78 YWPRGKVLGGSSSINGMIYVRGQPEDFDLWAQLGNQGWGYDDVLPYFKRAE--DNERGADAYHGRSGPLPVSDPPLPNPL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 215 AEAFVDAAQQDGLKY-RDYNGRIQNGVAFLHTTTRNSTRWSSNRAYLYPLKgKRSNLHVRKNALVTKVLIDpqTKTAYGI 293
Cdd:COG2303 156 SDAFIEAAEELGIPRaDDFNGGACEGCGFCQVTCRNGARWSAARAYLPPAL-KRPNLTVRTGALVTRILFD--GGRATGV 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 294 MVQTEGRMQKILARKEVIVSAGAINTPQLLMLSGVGPAKHLREVGIKPLADL-AVGYNLQDHTAPAVTFTTNATSLKFED 372
Cdd:COG2303 233 EYRDDGEEHTVRAAREVILAAGAINSPQLLLLSGIGPASHLREHGIPVVHDLpGVGRNLQDHLEVSVVFRFKEPVTLNKS 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 373 FSDPTLINRF-NRMEGPYGSPGGcEAIAFWDLDHERDedgWPDIELFLVGGSMSsnpaisRAFGLKKSIYDtlfaeiedk 451
Cdd:COG2303 313 LRKARIGLQYlLTRSGPLTSNVA-EAGGFFRSDPGLE---RPDLQFHFLPLGLT------PRWGKKALHDG--------- 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 452 slNAFMIFPMILRPKSRGRIMLKSSDPFKYPLIHANYFAHPYDVDISVRGLLKAISLMEQRGMEKINARlwekkiPTCKQ 531
Cdd:COG2303 374 --HGFTAHVEQLRPESRGRVTLDSADPLGAPLIRPNYLSDENDRRVLVAGVRLAREIAAQPALAPYRGE------EILPG 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 532 HPYKSWAYWAcYVRHFTFTIYHYSGTAKMGPksDRAAVVDHRLRVHGIKNLRVADASIMPEIMSGHPNGPVFMIAEKAAD 611
Cdd:COG2303 446 PDVQSDEELA-FIRARAYTIYHPVGTCRMGT--DPDSVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKAAD 522
|
....*.
gi 24642039 612 MIKQDH 617
Cdd:COG2303 523 MILGDY 528
|
|
| PRK02106 |
PRK02106 |
choline dehydrogenase; Validated |
57-614 |
7.57e-148 |
|
choline dehydrogenase; Validated
Pssm-ID: 235000 [Multi-domain] Cd Length: 560 Bit Score: 438.88 E-value: 7.57e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 57 DSEYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVmDVPI-----VAHFLQLGEMNWKYRTQPSDHaclaMNN 131
Cdd:PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRW-DFFIqmpaaLAFPLQGKRYNWAYETEPEPH----MNN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 132 NRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEAL-GNPGWSFKDVLPYFKKYEGSSVPdaEEDYVGRNGPVKVSyvnw 210
Cdd:PRK02106 78 RRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELpGLEGWSYADCLPYFKKAETRDGG--EDDYRGGDGPLSVT---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 211 RSKIA-----EAFVDAAQQDGLKY-RDYNGRIQNGVAFLHTTTRNSTRWSSNRAYLYPLKgKRSNLHVRKNALVTKVLID 284
Cdd:PRK02106 152 RGKPGtnplfQAFVEAGVQAGYPRtDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPAL-KRPNLTIVTHALTDRILFE 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 285 PqtKTAYGIMVQTEGRMQKILARKEVIVSAGAINTPQLLMLSGVGPAKHLREVGIKPLADLA-VGYNLQDHTAPAVTFT- 362
Cdd:PRK02106 231 G--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPgVGENLQDHLEVYIQYEc 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 363 TNATSLkfedFSDPTLINR--------FNRmEGPyGSPGGCEAIAFWdldHERDEDGWPDIEL-FLvggsmssnPAISRa 433
Cdd:PRK02106 309 KQPVSL----YPALKWWNKpkigaewlFTG-TGL-GASNHFEAGGFI---RSRAGVDWPNIQYhFL--------PVAIR- 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 434 fglkksiYDTLFAEIEDkslnAFM--IFPMilRPKSRGRIMLKSSDPFKYPLIHANYFAHPYDvdisVRGLLKAISL--- 508
Cdd:PRK02106 371 -------YDGSNAVKGH----GFQahVGPM--RSPSRGSVKLKSADPRAHPSILFNYMSTEQD----WREFRDAIRLtre 433
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 509 -MEQRGMEKINARlwekKI-PTCKqhpYKSWAYWACYVRHFTFTIYHYSGTAKMGPksDRAAVVDHRLRVHGIKNLRVAD 586
Cdd:PRK02106 434 iMAQPALDPYRGR----EIsPGAD---VQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVD 504
|
570 580
....*....|....*....|....*...
gi 24642039 587 ASIMPEIMSGHPNGPVFMIAEKAADMIK 614
Cdd:PRK02106 505 ASIMPTITNGNLNAPTIMIAEKAADLIR 532
|
|
| Rv0697 |
TIGR03970 |
dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the ... |
61-613 |
3.94e-82 |
|
dehydrogenase, Rv0697 family; This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.
Pssm-ID: 274888 [Multi-domain] Cd Length: 487 Bit Score: 266.68 E-value: 3.94e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 61 DFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVMDVP-IVAHFLQL-----GEMNWKYRTQ----PSDHACLAmn 130
Cdd:TIGR03970 2 DVLIVGAGSAGSVLAARLSEDPSCTVTVLEAGPGYRDPSRLPaQLTDGLRLpigpaSPVVWRYGVEltdgPRRASQIV-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 131 nnrcnwpRGKVMGGSSVLNYMMYTRGNRRDYDRWealGNPGWSFKDVLPYFKKYEGSSvpDAEEDYVGRNGPVKVSYVNW 210
Cdd:TIGR03970 80 -------RGRVLGGSGAVNGGYFCRALPADFDAW---PIPGWSWDDVLPHFRAIETDL--DFDGPLHGTAGPIPVRRTAE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 211 RSKIAEAFVDAAQQDGLKYR-DYNG---RIQNGVAFLHTTTRNSTRWSSNRAYLYPlKGKRSNLHVRKNALVTKVLIdpQ 286
Cdd:TIGR03970 148 LDGISAAFVAAALGAGFGWIaDLNGsgpGLPGGVGAVPLNVDGGRRVSTAVAYLLP-ALKRPNLTVEADTRVVRILF--S 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 287 TKTAYGIMVQTEGRMQKILARKeVIVSAGAINTPQLLMLSGVGPAKHLREVGIKPLADLAVGYNLQDH------TAPAVT 360
Cdd:TIGR03970 225 GTRAVGVEVLGDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLPVGSDFVDHpewvlpYRWRPT 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 361 FTTNATSLKFEdfsdpTLINRFNRMEGPYGSPggceaiaFWDLDHERDEDgWPDIELFLvggsmssnpaisrafglkksi 440
Cdd:TIGR03970 304 HDRPPTSPVLE-----TVLNTADIEIRPYTAG-------FTALVPGSPRD-DPHLGVAL--------------------- 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 441 ydtlfaeiedkslnafmifpmiLRPKSRGRIMLKSSDPFKYPLIHANYFAHPYDVDISVRGLLKAISLMEQrgmekinar 520
Cdd:TIGR03970 350 ----------------------MRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGS--------- 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 521 lwekkIPTCKQHPYKSWAYWACYVRHFTFTIYHYSGTAKMGPKSDRAAVVDHRLRVHGIKNLRVADASIMPEIMSGHPNG 600
Cdd:TIGR03970 399 -----PELGPLLEPAVREGEASWVLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHA 473
|
570
....*....|...
gi 24642039 601 PVFMIAEKAADMI 613
Cdd:TIGR03970 474 TAVMVAERAAEFL 486
|
|
| GMC_oxred_N |
pfam00732 |
GMC oxidoreductase; This family of proteins bind FAD as a cofactor. |
125-356 |
1.38e-50 |
|
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
Pssm-ID: 366272 [Multi-domain] Cd Length: 218 Bit Score: 174.39 E-value: 1.38e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 125 ACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEAL-GNPGWSFKDVLPYFKKYEGssvpdaeedyvgrngPV 203
Cdd:pfam00732 10 SAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEfGLEGWGYDDYLPYMDKVEG---------------PL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 204 KVS----YVNWRSKiaeAFVDAAQQDGLKY----RDYNGriQNGVAFLHTTTRNSTRWSSNRAYLYPLKGKrsNLHVRKN 275
Cdd:pfam00732 75 GVTtkgiEESPLNQ---ALLKAAEELGYPVeavpRNSNG--CHYCGFCGLGCPTGAKQSTARTWLRPALER--NLRILTG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 276 ALVTKVLIDPQTKTAYGIMVQT--EGRMQKILARKEVIVSAGAINTPQLLMLSGVGPAKHlrevgikpladlAVGYNLQD 353
Cdd:pfam00732 148 AKAEKIIILGRGGRAVGVEARDggGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQL 215
|
...
gi 24642039 354 HTA 356
Cdd:pfam00732 216 HPV 218
|
|
| GMC_oxred_C |
pfam05199 |
GMC oxidoreductase; This domain found associated with pfam00732. |
465-609 |
6.04e-44 |
|
GMC oxidoreductase; This domain found associated with pfam00732.
Pssm-ID: 398739 [Multi-domain] Cd Length: 143 Bit Score: 153.71 E-value: 6.04e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 465 PKSRGRIMLKSSDPFKYPLIHANYFAHPYDVDISVRGLLKAISLMEQRGMeKINARLWEKKIPTCKQHPYKSWAYWACYV 544
Cdd:pfam05199 1 PRSRGRVTLSSSDPTGLPVIDPNYLSDPADLAALRAALRLARRILAAAGL-VLGVELTPGPVPEVSDAAVTSDDELLAYI 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24642039 545 RHFTFTIYHYSGTAKMGPKSDRAaVVDHRLRVHGIKNLRVADASIMPEIMSGHPNGPVFMIAEKA 609
Cdd:pfam05199 80 RAAASTSYHPMGTCRMGADPDDA-VVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 143
|
|
| PLN02785 |
PLN02785 |
Protein HOTHEAD |
6-605 |
1.64e-30 |
|
Protein HOTHEAD
Pssm-ID: 215420 [Multi-domain] Cd Length: 587 Bit Score: 126.46 E-value: 1.64e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 6 LIFVGLCLAYMAtwsqiSAQNNNNVLFETINFLRRGQADVELENYDNNVILDSEYDFIVVGAGTAGCALAARLSENpqWR 85
Cdd:PLN02785 7 LFLLLLCLPTSS-----SSQGKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQN--FS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 86 VLLLEAGGPERLVMDVPIVAHFlQLGEMNwkyrTQPSDHACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRwe 165
Cdd:PLN02785 80 VLLLERGGVPFGNANVSFLENF-HIGLAD----TSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQK-- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 166 algnPGWSFKDVlpyfkkyeGSSVPDAEEDYVGRngPvKVSyvNWRSKIAEAFVDA--AQQDGLKYRDYNGRIQNGVAFL 243
Cdd:PLN02785 153 ----AGWDAKLV--------NESYPWVERQIVHW--P-KVA--PWQAALRDSLLEVgvSPFNGFTYDHVYGTKVGGTIFD 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 244 HTTTRNSTrwssnrAYLYPlKGKRSNLHVRKNALVTKVLIDPQTK--TAYGIMVQTE--GRMQKILARK---EVIVSAGA 316
Cdd:PLN02785 216 EFGRRHTA------AELLA-AGNPNKLRVLLHATVQKIVFDTSGKrpRATGVIFKDEngNQHQAFLSNNkgsEIILSAGA 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 317 INTPQLLMLSGVGPAKHLREVGIK-PLADLAVGYNLQDHtapavtfTTNATSLKFEDFSDPTLINRFNRME-GPY--GSP 392
Cdd:PLN02785 289 IGSPQMLLLSGIGPKKELKKHKIPvVLHNEHVGKGMADN-------PMNSIFVPSKAPVEQSLIQTVGITKmGVYieASS 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 393 GGCEAIAFWDLDHerdedGWPDIELflvgGSMSSNPAISRAF-GLKKSIYDTLFaeIEDKSLNAFMIFPMILRPKSRGRI 471
Cdd:PLN02785 362 GFGQSPDSIHCHH-----GIMSAEI----GQLSTIPPKQRTPeAIQAYIHRKKN--LPHEAFNGGFILEKIAGPISTGHL 430
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642039 472 MLKSSDPFKYPLIHANYFAHPYDVDISVRGlLKAISLMEQ------------RGMEKINARLWEKKIPTCKQHPYKSWAY 539
Cdd:PLN02785 431 SLINTNVDDNPSVTFNYFKHPQDLQRCVYG-IRTIEKIVKtnhftnftqcdkQTMEKVLNMSVKANINLIPKHTNDTKSL 509
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24642039 540 wACYVRHFTFTIYHYSGTAKMGpksdraAVVDHRLRVHGIKNLRVADASIMPEIMSGHPNGPVFMI 605
Cdd:PLN02785 510 -EQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMM 568
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
59-91 |
3.58e-05 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 46.68 E-value: 3.58e-05
10 20 30
....*....|....*....|....*....|...
gi 24642039 59 EYDFIVVGAGTAGCALAARLSENPQWRVLLLEA 91
Cdd:COG0579 4 MYDVVIIGAGIVGLALARELSRYEDLKVLVLEK 36
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
59-94 |
4.32e-05 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 46.05 E-value: 4.32e-05
10 20 30
....*....|....*....|....*....|....*.
gi 24642039 59 EYDFIVVGAGTAGCALAARLSENpQWRVLLLEAGGP 94
Cdd:COG0665 2 TADVVVIGGGIAGLSTAYHLARR-GLDVTVLERGRP 36
|
|
| Lycopene_cycl |
pfam05834 |
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. ... |
61-92 |
3.64e-04 |
|
Lycopene cyclase protein; This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclization of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Pssm-ID: 310433 [Multi-domain] Cd Length: 380 Bit Score: 43.17 E-value: 3.64e-04
10 20 30
....*....|....*....|....*....|...
gi 24642039 61 DFIVVGAGTAGCALAARLSEN-PQWRVLLLEAG 92
Cdd:pfam05834 1 DVVIIGAGPAGLSLAARLAAAkPGLSVVLIEPG 33
|
|
| PTZ00367 |
PTZ00367 |
squalene epoxidase; Provisional |
59-114 |
3.76e-04 |
|
squalene epoxidase; Provisional
Pssm-ID: 240384 [Multi-domain] Cd Length: 567 Bit Score: 43.30 E-value: 3.76e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 24642039 59 EYDFIVVGAGTAGCALAARLSENPQwRVLLLE---AGGPERlvmdvpIVAHFLQLGEMN 114
Cdd:PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGR-KVLMLErdlFSKPDR------IVGELLQPGGVN 84
|
|
| carotene-cycl |
TIGR01790 |
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ... |
61-94 |
1.14e-03 |
|
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Pssm-ID: 130850 [Multi-domain] Cd Length: 388 Bit Score: 41.65 E-value: 1.14e-03
10 20 30
....*....|....*....|....*....|....
gi 24642039 61 DFIVVGAGTAGCALAARLSEnPQWRVLLLEAGGP 94
Cdd:TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPP 33
|
|
| GG-red-SF |
TIGR02032 |
geranylgeranyl reductase family; This model represents a subfamily which includes ... |
60-90 |
1.24e-03 |
|
geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]
Pssm-ID: 273936 [Multi-domain] Cd Length: 295 Bit Score: 41.15 E-value: 1.24e-03
10 20 30
....*....|....*....|....*....|.
gi 24642039 60 YDFIVVGAGTAGCALAARLSENpQWRVLLLE 90
Cdd:TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLE 30
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
61-92 |
2.79e-03 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 40.46 E-value: 2.79e-03
10 20 30
....*....|....*....|....*....|..
gi 24642039 61 DFIVVGAGTAGCALAARLSENPqWRVLLLEAG 92
Cdd:pfam01266 1 DVVVIGGGIVGLSTAYELARRG-LSVTLLERG 31
|
|
| PRK06370 |
PRK06370 |
FAD-containing oxidoreductase; |
60-90 |
3.66e-03 |
|
FAD-containing oxidoreductase;
Pssm-ID: 235787 [Multi-domain] Cd Length: 463 Bit Score: 40.19 E-value: 3.66e-03
10 20 30
....*....|....*....|....*....|.
gi 24642039 60 YDFIVVGAGTAGCALAARLSEnPQWRVLLLE 90
Cdd:PRK06370 6 YDAIVIGAGQAGPPLAARAAG-LGMKVALIE 35
|
|
| COQ6 |
TIGR01989 |
ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase ... |
60-92 |
6.08e-03 |
|
ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Pssm-ID: 273914 [Multi-domain] Cd Length: 437 Bit Score: 39.35 E-value: 6.08e-03
10 20 30
....*....|....*....|....*....|....*.
gi 24642039 60 YDFIVVGAGTAGCALAARLSENPQW---RVLLLEAG 92
Cdd:TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTkdlKVLLLDAV 36
|
|
| PLN02661 |
PLN02661 |
Putative thiazole synthesis |
50-90 |
6.66e-03 |
|
Putative thiazole synthesis
Pssm-ID: 178267 Cd Length: 357 Bit Score: 39.04 E-value: 6.66e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 24642039 50 YDNNVILDSEYDFIVVGAGTAGCALAARLSENPQWRVLLLE 90
Cdd:PLN02661 83 YMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
|
|
| |
