|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
44-401 |
4.07e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 44 KLEEKCKVDmEAHKTALDKeydtllhnftRDLDRLETKHQQDVERRAKQTSAAEKKLHKEITLKQENDRKVYDLNRKKEY 123
Cdd:PTZ00121 1465 KAEEAKKAD-EAKKKAEEA----------KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 124 KANKERWKRELSMDESTPKRQRDLTLQSQKDNLKQHEAQEEQRMLQAQKQYIELEMRKfKRKRMIMQHEHEDQQLRDELG 203
Cdd:PTZ00121 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE-ARIEEVMKLYEEEKKMKAEEA 1612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 204 KKEQQLQQAHAMLLKHHEKTQELEYRQQKSVHQLREEQINKQHDTELHNQKDYMDRiKKELVRKHAVELRQQPKSLKQKE 283
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK-KAEEDKKKAEEAKKAEEDEKKAA 1691
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 284 LQIRKQFREtcKTQTKQYKRYKAQvlqttpKEQQKEVIKQLKEEKHRKLTLLGEQYEQsiaDMFQSQSYKLDESQVIECQ 363
Cdd:PTZ00121 1692 EALKKEAEE--AKKAEELKKKEAE------EKKKAEELKKAEEENKIKAEEAKKEAEE---DKKKAEEAKKDEEEKKKIA 1760
|
330 340 350
....*....|....*....|....*....|....*...
gi 19920342 364 RTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRELENR 401
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
34-297 |
2.35e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 34 MRREHQAHLVKLEEKCKVDMEAHKTALDKEYDTLlhnftRDLDRLETKHQQDVERRAKQTSAAEKklhkEITLKQENDRK 113
Cdd:pfam17380 344 MERERELERIRQEERKRELERIRQEEIAMEISRM-----RELERLQMERQQKNERVRQELEAARK----VKILEEERQRK 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 114 VYDLNRKKEYKANKERWKRELSMDESTPKRQRDLtlqsqkDNLKQHEAQEEQRMLQAQKQYIELemrkfKRKRMIMQHEH 193
Cdd:pfam17380 415 IQQQKVEMEQIRAEQEEARQREVRRLEEERAREM------ERVRLEEQERQQQVERLRQQEEER-----KRKKLELEKEK 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 194 EDQQLRDELGKK--EQQLQQAHAMLLKHHEKTQELEYRQQKSVHQLREEQINKQHDTELHNQKDYMDRIKKELVRKHAVE 271
Cdd:pfam17380 484 RDRKRAEEQRRKilEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATE 563
|
250 260
....*....|....*....|....*.
gi 19920342 272 LRQQPKSLkQKELQIRKQFRETCKTQ 297
Cdd:pfam17380 564 ERSRLEAM-EREREMMRQIVESEKAR 588
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
68-341 |
2.05e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 68 LHNFTRDLDRLETK---HQQDVERRAKQTSAAEKKLhKEITLKQENDRKVYDLNRKKEYKANKErwKRELSMDEStPKRQ 144
Cdd:COG1196 234 LRELEAELEELEAEleeLEAELEELEAELAELEAEL-EELRLELEELELELEEAQAEEYELLAE--LARLEQDIA-RLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 145 RDLTLQSQKDNLKQHEAQEEQRMLQAQKQYIELEmrkfKRKRMIMQHEHEDQQLRDELGKKEQQLQQAHAMLLKHHEKTQ 224
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELE----EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 225 ELEYRQQKSVHQLREEQINKQHDTELHNQKDYMDRIKKELVRKHAVELRQQPKSLKQKELQIRKQFRETCKTQTKQYKRY 304
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270
....*....|....*....|....*....|....*..
gi 19920342 305 KAQVLQTTPKEQQKEVIKQLKEEKHRKLTLLGEQYEQ 341
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
118-426 |
2.92e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 118 NRKKEYKANKERWKRELSMDESTPKRQRDLTLQSQKDNLKQHEAQEEQRMLQAQKQYIELEMRKFKRKRMIMQHEHEDQQ 197
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 198 LRDELGKKEQQLQQAHAMLLKHHEKTQELEYRQQksvhQLREEQINKQHDTELHNQKDYMDRIKKELVRKHAVELRQQPK 277
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLE----ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 278 SLKQKELQIRKQFRetckTQTKQYKRYKAQVLQTTpkEQQKEVIKQLKEEKHRKLTLLGEQyeqsiadmfQSQSYKLDES 357
Cdd:TIGR02168 369 ELESRLEELEEQLE----TLRSKVAQLELQIASLN--NEIERLEARLERLEDRRERLQQEI---------EELLKKLEEA 433
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19920342 358 QVIECQRTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRELENRVSVRRGLLENKMDAELQQFNQERAE 426
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
44-401 |
4.07e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 44 KLEEKCKVDmEAHKTALDKeydtllhnftRDLDRLETKHQQDVERRAKQTSAAEKKLHKEITLKQENDRKVYDLNRKKEY 123
Cdd:PTZ00121 1465 KAEEAKKAD-EAKKKAEEA----------KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 124 KANKERWKRELSMDESTPKRQRDLTLQSQKDNLKQHEAQEEQRMLQAQKQYIELEMRKfKRKRMIMQHEHEDQQLRDELG 203
Cdd:PTZ00121 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE-ARIEEVMKLYEEEKKMKAEEA 1612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 204 KKEQQLQQAHAMLLKHHEKTQELEYRQQKSVHQLREEQINKQHDTELHNQKDYMDRiKKELVRKHAVELRQQPKSLKQKE 283
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK-KAEEDKKKAEEAKKAEEDEKKAA 1691
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 284 LQIRKQFREtcKTQTKQYKRYKAQvlqttpKEQQKEVIKQLKEEKHRKLTLLGEQYEQsiaDMFQSQSYKLDESQVIECQ 363
Cdd:PTZ00121 1692 EALKKEAEE--AKKAEELKKKEAE------EKKKAEELKKAEEENKIKAEEAKKEAEE---DKKKAEEAKKDEEEKKKIA 1760
|
330 340 350
....*....|....*....|....*....|....*...
gi 19920342 364 RTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRELENR 401
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
32-437 |
1.13e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 32 KRMRREHQAHLVKLEEKCKVDMEAHKTALDKeydtllhnftRDLDRLETKHQQDVERRAK-QTSAAEKKLHKEITLKQEN 110
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEK----------KKADEAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 111 DRKVYDLNRKKEYKANKERWKRELSMDESTPKRQRDLTLQSQKDNLKQhEAQEEQRMLQAQKQYIELemrkfKRKRMIMQ 190
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK-KAEEAKKADEAKKKAEEA-----KKKADEAK 1503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 191 HEHEDQQLRDELGKKEQQLQQAHAMLLKHHEKTQELEYRQQ-KSVHQLRE-EQINKQHDTELHNQKDYMDRIKKELVRKh 268
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEkKKADELKKaEELKKAEEKKKAEEAKKAEEDKNMALRK- 1582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 269 AVELRQQPKSLKQKELQIRKQFRETCKTQTKQYKRYKAQVLQTTPKEQQKEVIKQLK---EEKHRKLTLLGEQYEQSIAD 345
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKkkeAEEKKKAEELKKAEEENKIK 1662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 346 MFQSQSYKLDESQVIECQRTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRELENRVSVRRGLLENKMDAELQQFNQE-- 423
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEed 1742
|
410
....*....|....*.
gi 19920342 424 --RAERLRMKHEKHTK 437
Cdd:PTZ00121 1743 kkKAEEAKKDEEEKKK 1758
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
44-445 |
1.21e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 44 KLEEKCKVDMEAHKTALDKEYDTLLHNFTRDLDRLETKHQQDVERRAKQTSAAEKKLHKEITLKQENDRKVYDLNRKKEY 123
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 124 KANKERWKRELSMDESTPKRQRDLTLQSQKDNLKQHEAQEEQRMLQAQKQYIEL----EMRKF---KRKRMIMQHEHEDQ 196
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkadEAKKKaeeAKKAEEAKKKAEEA 1469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 197 QLRDELGKKEQQLQQAHAMLLKHHEKTQELEYRQQKSVHQLREEQINKQHDTELHNQKDYMDRIKKELVRKHAVELRQQP 276
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 277 KSLKQKEL----QIRKQFRETCKTQTKQYKRYKAQVLQTTPKEQQKEVIKQLKEEKHRKLTLLGEQYEQSIADMfQSQSY 352
Cdd:PTZ00121 1550 ELKKAEELkkaeEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE-ELKKA 1628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 353 KLDESQVIECQRTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRELENRVSVRRGLLENKMDAELQQFNQE---RAERLR 429
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEeakKAEELK 1708
|
410
....*....|....*.
gi 19920342 430 MKHEKHTKELEAFDNE 445
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKA 1724
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
44-422 |
2.71e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 44 KLEEKCKVDmEAHKTALDKEYDtllhnftrDLDRLETKHQQDVERRAKQTSAAEKKLHKEITLKQENDRKVYDLNRKKEY 123
Cdd:PTZ00121 1517 KAEEAKKAD-EAKKAEEAKKAD--------EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 124 KANKERWKRELSMDESTPKRQRDLTLQSQKDNLKQHEAQEEQRMLQAQKQYIELEMRKFKRKRMIMQHEHEDQQLRDELG 203
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 204 KKEQQlqqahamllkhhEKTQELEYRQQKSVHQLREEQINKQHDtelhnqkdymDRIKKELVRKHAVELRQQPKSLKQKE 283
Cdd:PTZ00121 1668 KKAEE------------DKKKAEEAKKAEEDEKKAAEALKKEAE----------EAKKAEELKKKEAEEKKKAEELKKAE 1725
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 284 lQIRKQFRETCKTQTKQYKRyKAQVLQTtpKEQQKEVIKQLKEEKHRKLTLLGEQYEQSIADMFQSQsyklDESQVIECQ 363
Cdd:PTZ00121 1726 -EENKIKAEEAKKEAEEDKK-KAEEAKK--DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE----DEKRRMEVD 1797
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 19920342 364 RTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRELENRVSVRRGLLENKMDAELQQFNQ 422
Cdd:PTZ00121 1798 KKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNK 1856
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
34-297 |
2.35e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 34 MRREHQAHLVKLEEKCKVDMEAHKTALDKEYDTLlhnftRDLDRLETKHQQDVERRAKQTSAAEKklhkEITLKQENDRK 113
Cdd:pfam17380 344 MERERELERIRQEERKRELERIRQEEIAMEISRM-----RELERLQMERQQKNERVRQELEAARK----VKILEEERQRK 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 114 VYDLNRKKEYKANKERWKRELSMDESTPKRQRDLtlqsqkDNLKQHEAQEEQRMLQAQKQYIELemrkfKRKRMIMQHEH 193
Cdd:pfam17380 415 IQQQKVEMEQIRAEQEEARQREVRRLEEERAREM------ERVRLEEQERQQQVERLRQQEEER-----KRKKLELEKEK 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 194 EDQQLRDELGKK--EQQLQQAHAMLLKHHEKTQELEYRQQKSVHQLREEQINKQHDTELHNQKDYMDRIKKELVRKHAVE 271
Cdd:pfam17380 484 RDRKRAEEQRRKilEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATE 563
|
250 260
....*....|....*....|....*.
gi 19920342 272 LRQQPKSLkQKELQIRKQFRETCKTQ 297
Cdd:pfam17380 564 ERSRLEAM-EREREMMRQIVESEKAR 588
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
68-341 |
2.05e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 68 LHNFTRDLDRLETK---HQQDVERRAKQTSAAEKKLhKEITLKQENDRKVYDLNRKKEYKANKErwKRELSMDEStPKRQ 144
Cdd:COG1196 234 LRELEAELEELEAEleeLEAELEELEAELAELEAEL-EELRLELEELELELEEAQAEEYELLAE--LARLEQDIA-RLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 145 RDLTLQSQKDNLKQHEAQEEQRMLQAQKQYIELEmrkfKRKRMIMQHEHEDQQLRDELGKKEQQLQQAHAMLLKHHEKTQ 224
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELE----EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 225 ELEYRQQKSVHQLREEQINKQHDTELHNQKDYMDRIKKELVRKHAVELRQQPKSLKQKELQIRKQFRETCKTQTKQYKRY 304
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270
....*....|....*....|....*....|....*..
gi 19920342 305 KAQVLQTTPKEQQKEVIKQLKEEKHRKLTLLGEQYEQ 341
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
118-426 |
2.92e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 118 NRKKEYKANKERWKRELSMDESTPKRQRDLTLQSQKDNLKQHEAQEEQRMLQAQKQYIELEMRKFKRKRMIMQHEHEDQQ 197
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 198 LRDELGKKEQQLQQAHAMLLKHHEKTQELEYRQQksvhQLREEQINKQHDTELHNQKDYMDRIKKELVRKHAVELRQQPK 277
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLE----ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 278 SLKQKELQIRKQFRetckTQTKQYKRYKAQVLQTTpkEQQKEVIKQLKEEKHRKLTLLGEQyeqsiadmfQSQSYKLDES 357
Cdd:TIGR02168 369 ELESRLEELEEQLE----TLRSKVAQLELQIASLN--NEIERLEARLERLEDRRERLQQEI---------EELLKKLEEA 433
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19920342 358 QVIECQRTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRELENRVSVRRGLLENKMDAELQQFNQERAE 426
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
138-341 |
4.98e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 4.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 138 ESTPKRQRDL-TLQSQKDNLKQHEAQEEQRMLQAQKQYIELEMRKFKRKRMIMQHEHEDQQLRDELGKKEQQLQQAHAML 216
Cdd:COG4942 20 DAAAEAEAELeQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 217 LKHHEKTQELEYRQQKSVHQLREEQINKQHD-TELHNQKDYMDRIKKELvRKHAVELRQQPKSLKQKELQIRKQFRETCK 295
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPAR-REQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 19920342 296 TQTKQYKRYKAQVLQTTPKEQQKEVIKQLKEEKHRKLTLLGEQYEQ 341
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
74-438 |
6.07e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 74 DLDRLETKHQQDVERRAKQTSAAEKKLHKEITLKQENDRKVYDLNR-KKEYKANKERWKRELSMDESTPKR---QRDLTL 149
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKaEDAKKAEAVKKAEEAKKDAEEAKKaeeERNNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 150 QSQKDNLKQHEAQEEQRMLQAQKQYIELEMRKFKRKRMIMQ-HEHEDQQLRDELGKKEQQLQQAHAMLLKHHEKTQELEY 228
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 229 RQQKSVHQLREEQINKQH------DTELHNQKDYMDRIKKELVRKHAVELRQQPKSLKQKElQIRKQFRETCK----TQT 298
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEaeaaadEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD-EAKKKAEEDKKkadeLKK 1412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 299 KQYKRYKAQVLQTTPKEQQKEVIKQLKEEKHRKLTLLGEQYEQsiADMFQSQSYKLDESQVIECQRTHEQLEYELEMLTA 378
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE--AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19920342 379 YQNKNKKQAQEQRDRErrELENRVSVRRGLLENKMDAELQQFNQER-AERLRMKHEKHTKE 438
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAA--EAKKKADEAKKAEEAKKADEAKKAEEAKkADEAKKAEEKKKAD 1549
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
74-441 |
1.67e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 74 DLDRLETKHQQDVERRAKQTSAAEKKLHKEITLKQENDRKVyDLNRKKEYKANKERWKRELSMDESTPKRQRDLTLQSQk 153
Cdd:PTZ00121 1126 DARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKA-EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAE- 1203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 154 dnlKQHEAQEEQRMLQAQKQYIELEMRKFKRKRMIMQHEHEDQQLRDELGKKEQQLQQAHAMLLKHHEKTQELEYRQQKS 233
Cdd:PTZ00121 1204 ---AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 234 VHQLREEQINKQHDTELHNQKDYMDRIKKEL-VRKHAVELRQQPKSLKQKELQIRKQFRETCKTQTKQYKRYKAQVLQTT 312
Cdd:PTZ00121 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAeEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 313 PKEQQKEVIKQLKEEKHRKLTLLGEQYEQSIADMFQSQSYKLDESQVIECQRTHEQLEYELEMLTAYQNKNKKQAQEQRD 392
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA 1440
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 19920342 393 RERR---ELENRVSVRRGLLENKMDAElqqfNQERAERLRMKHEKHTKELEA 441
Cdd:PTZ00121 1441 EEAKkadEAKKKAEEAKKAEEAKKKAE----EAKKADEAKKKAEEAKKADEA 1488
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
32-440 |
2.03e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 32 KRMRREHQAHLVKLEEKCKVDMEAHKTALDKEYDTLLHNFTRDLDRLETKHQQDVE----RRAKQTSAAEKKLHKEITLK 107
Cdd:PTZ00121 1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKaeeaRKADELKKAEEKKKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 108 QENDRKVYDLNRKKEYKANKERWKRELSMDESTPKRQRDLTLQSQK-DNLKQHEAQEEQRMLQAQKQYIELEMRK----- 181
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKaAEAAKAEAEAAADEAEAAEEKAEAAEKKkeeak 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 182 ------------FKRKRMIMQHEHEDQQLRDELGKKEQQLQQAHAMLLKHHEKTQELEYRQQ----KSVHQLREEQINKQ 245
Cdd:PTZ00121 1378 kkadaakkkaeeKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKaeeaKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 246 HDTELHNQKDYMDRI----KKELVRKHAVELRQQPKSLKQKELQIRKQFRETCKTQT--KQYKRYKAQVLQTTPKEQQKE 319
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKAdeakKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 320 VIKQLKEEKHRKLTLLGEQYEQSIADMFQSQSYKLDESQVIECQRTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRELE 399
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 19920342 400 NRVSVRRGLLENKMDAELQQFNQERAERLRMKHEKHTKELE 440
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
162-327 |
5.10e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.38 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 162 QEEQRMLQAQKQYIELEMRKfKRKRMIMQHEHEDQQLRDELGKKEQQLQQahamllkhhektqeleyrqqksvhqlREEQ 241
Cdd:PRK12704 45 EEAKKEAEAIKKEALLEAKE-EIHKLRNEFEKELRERRNELQKLEKRLLQ--------------------------KEEN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 242 INKqhdtelhnqkdymdriKKELVRKHAVELRQQPKSLKQKELQIRKQfRETCKTQTKQYKRYKAQVLQTTPKEQQKEVI 321
Cdd:PRK12704 98 LDR----------------KLELLEKREEELEKKEKELEQKQQELEKK-EEELEELIEEQLQELERISGLTAEEAKEILL 160
|
....*.
gi 19920342 322 KQLKEE 327
Cdd:PRK12704 161 EKVEEE 166
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
83-446 |
6.15e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.18 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 83 QQDVERRAKQTSAAEKKLHKEITLKQENDRKVYD----LNRKKEYKANKERWKRELSMDESTPKRQRDLTLQSQKdnLKQ 158
Cdd:pfam02463 140 QGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEalkkLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ--LKE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 159 HEAQEEQRMLQAQKQYIELEMRKFKrkrmimqheHEDQQLRDELGKKEQQLQQAHAMLLKHHEKTQELEYRQQKSVHQLR 238
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLL---------QELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEEL 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 239 EEQINKQHDTELHNQKDYMDRIKKELVRKHAVELRQQPKSLKQKELQIRKQFRETCKTQTKQYKRYKAQVLQTTPKEQQK 318
Cdd:pfam02463 289 KLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 319 EVIKQLKEEKHRKLTllgEQYEQSIADMFQSQSYKLDESQVIECQRTH-EQLEYELEMLTAYQNKNKKQAQEQRDRERR- 396
Cdd:pfam02463 369 EQLEEELLAKKKLES---ERLSSAAKLKEEELELKSEEEKEAQLLLELaRQLEDLLKEEKKEELEILEEEEESIELKQGk 445
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 19920342 397 --ELENRVSVRRGLLENKMDAELQQFNQERAERLRMKHEKHTKELEAFDNES 446
Cdd:pfam02463 446 ltEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
169-441 |
7.50e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.15 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 169 QAQK--QYIELEMRKFKRKRMIMQHEHEDQQLRDELGKKEQQLQQAHAMLLKHHEKTQELEYRQQKSVHQLREEQINKQH 246
Cdd:COG1196 208 QAEKaeRYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 247 DTELHNQKDymdRIKKELVRKHAVELRQQpksLKQKELQIRKQFRETCKTQTKQykrykaqvlqttpkEQQKEVIKQLKE 326
Cdd:COG1196 288 AEEYELLAE---LARLEQDIARLEERRRE---LEERLEELEEELAELEEELEEL--------------EEELEELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19920342 327 EKHRKLTLLGEQYEQSIADMFQSQSYKLDESQVIEcQRTHEQLEYELEMLTAYQNKNKKQAQEQRDRERRE--LENRVSV 404
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLErlEEELEEL 426
|
250 260 270
....*....|....*....|....*....|....*..
gi 19920342 405 RRGLLENKMDAELQQFNQERAERLRMKHEKHTKELEA 441
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
|
| |
