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Conserved domains on  [gi|24583793|ref|NP_609536|]
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translocase of outer membrane 70, isoform A [Drosophila melanogaster]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1003384)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 42-567 3.61e-70

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 237.57  E-value: 3.61e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793    42 KELDGEKKRPKAKIEKQAISLDGTA---------PDQELERNQKSAELGEKLSPLKEAnnykteGNNCYRNGKYDEAIKF 112
Cdd:TIGR00990  76 KRKQAEKETEGKTEEKKSTAPKNAPvepadelpeIDESSVANLSEEERKKYAAKLKEK------GNKAYRNKDFNKAIKL 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   113 YDKAIDKCPKehrtdmAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMNECLDDVTATCIL 192
Cdd:TIGR00990 150 YSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCII 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   193 EMFQNNQTIMFADRVLKETGRLDAEKGMRNRVPVVPSACFVNTYTRSFIADP-LQTMKVPAPKSDAPPKGFLRAHLAFLE 271
Cdd:TIGR00990 224 DGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPrPAGLEDSNELDEETGNGQLQLGLKSPE 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   272 EK----YEEIIPAcTEEIESSEAEAQYKVEALLMRGTFHLLCGSYVESQQDFDAIIAndyADPNLRAyAYIKRAALYIQL 347
Cdd:TIGR00990 304 SKadesYEEAARA-FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQ-SYIKRASMNLEL 378

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   348 DQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRLSLLAgdqrrleS 427
Cdd:TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA-------S 451

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   428 VMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAP------TNPALIVHQAIMVLQWRGDINLAVQLL 501
Cdd:TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKetkpmyMNVLPLINKALALFQWKQDFIEAENLC 531

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24583793   502 NKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAELVHVYSLRNAAVAQINVTKK 567
Cdd:TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 42-567 3.61e-70

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 237.57  E-value: 3.61e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793    42 KELDGEKKRPKAKIEKQAISLDGTA---------PDQELERNQKSAELGEKLSPLKEAnnykteGNNCYRNGKYDEAIKF 112
Cdd:TIGR00990  76 KRKQAEKETEGKTEEKKSTAPKNAPvepadelpeIDESSVANLSEEERKKYAAKLKEK------GNKAYRNKDFNKAIKL 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   113 YDKAIDKCPKehrtdmAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMNECLDDVTATCIL 192
Cdd:TIGR00990 150 YSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCII 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   193 EMFQNNQTIMFADRVLKETGRLDAEKGMRNRVPVVPSACFVNTYTRSFIADP-LQTMKVPAPKSDAPPKGFLRAHLAFLE 271
Cdd:TIGR00990 224 DGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPrPAGLEDSNELDEETGNGQLQLGLKSPE 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   272 EK----YEEIIPAcTEEIESSEAEAQYKVEALLMRGTFHLLCGSYVESQQDFDAIIAndyADPNLRAyAYIKRAALYIQL 347
Cdd:TIGR00990 304 SKadesYEEAARA-FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQ-SYIKRASMNLEL 378

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   348 DQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRLSLLAgdqrrleS 427
Cdd:TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA-------S 451

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   428 VMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAP------TNPALIVHQAIMVLQWRGDINLAVQLL 501
Cdd:TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKetkpmyMNVLPLINKALALFQWKQDFIEAENLC 531

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24583793   502 NKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAELVHVYSLRNAAVAQINVTKK 567
Cdd:TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 330-539 1.59e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 91.71  E-value: 1.59e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 330 PNLRAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAiafvqkc 409
Cdd:COG2956   4 PVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------- 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 410 YAEYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQ 489
Cdd:COG2956  77 EALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA-ELYL 155

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 24583793 490 WRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKAL 539
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERAL 205
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
382-509 4.68e-05

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 46.38  E-value: 4.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793  382 EQIEPALAEFEKAVSIAPNHAIAFVqkCYAEYRLSL----LAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQ 457
Cdd:PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYC--ALAECYLSMaqmgIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 24583793  458 QFTQAEEYYKKAMVLAPTNPALIVHQAIMvLQWRGDINLAVQLLNKAIEVDP 509
Cdd:PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWN-LFMAGQLEEALQTINECLKLDP 403
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 336-401 7.33e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 7.33e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24583793 336 AYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNH 401
Cdd:cd24142   2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 90-122 5.88e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 5.88e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 24583793    90 ANNYKTEGNNCYRNGKYDEAIKFYDKAIDKCPK 122
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 42-567 3.61e-70

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 237.57  E-value: 3.61e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793    42 KELDGEKKRPKAKIEKQAISLDGTA---------PDQELERNQKSAELGEKLSPLKEAnnykteGNNCYRNGKYDEAIKF 112
Cdd:TIGR00990  76 KRKQAEKETEGKTEEKKSTAPKNAPvepadelpeIDESSVANLSEEERKKYAAKLKEK------GNKAYRNKDFNKAIKL 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   113 YDKAIDKCPKehrtdmAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMNECLDDVTATCIL 192
Cdd:TIGR00990 150 YSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCII 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   193 EMFQNNQTIMFADRVLKETGRLDAEKGMRNRVPVVPSACFVNTYTRSFIADP-LQTMKVPAPKSDAPPKGFLRAHLAFLE 271
Cdd:TIGR00990 224 DGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPrPAGLEDSNELDEETGNGQLQLGLKSPE 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   272 EK----YEEIIPAcTEEIESSEAEAQYKVEALLMRGTFHLLCGSYVESQQDFDAIIAndyADPNLRAyAYIKRAALYIQL 347
Cdd:TIGR00990 304 SKadesYEEAARA-FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQ-SYIKRASMNLEL 378

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   348 DQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRLSLLAgdqrrleS 427
Cdd:TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA-------S 451

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   428 VMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAP------TNPALIVHQAIMVLQWRGDINLAVQLL 501
Cdd:TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKetkpmyMNVLPLINKALALFQWKQDFIEAENLC 531

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24583793   502 NKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAELVHVYSLRNAAVAQINVTKK 567
Cdd:TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 330-539 1.59e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 91.71  E-value: 1.59e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 330 PNLRAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAiafvqkc 409
Cdd:COG2956   4 PVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------- 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 410 YAEYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQ 489
Cdd:COG2956  77 EALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA-ELYL 155

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 24583793 490 WRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKAL 539
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERAL 205
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
362-543 1.04e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.91  E-value: 1.04e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 362 RLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFvqkcyaeYRLSLLAGDQRRLESVMHTFQNAIERFPS 441
Cdd:COG0457   2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEAL-------YNLGLAYLRLGRYEEALADYEQALELDPD 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 442 CVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTV 521
Cdd:COG0457  75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG-LALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153

                       170       180
                ....*....|....*....|..
gi 24583793 522 EVQRAQLTRAVELFEKALLYAK 543
Cdd:COG0457 154 LEKLGRYEEALELLEKLEAAAL 175
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 314-539 3.59e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 91.59  E-value: 3.59e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 314 ESQQDFDAIIANDYADPNLRAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEK 393
Cdd:COG3914  58 ALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRR 137

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 394 AVSIAPNHAIAFvqkcyaeYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLA 473
Cdd:COG3914 138 ALALNPDFAEAY-------LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24583793 474 PTNPALIvHQAIMVLQWRGDINLAVQLLNKAIEVDPKCE------LAYETLGTVEVQRAQLTRAVELFEKAL 539
Cdd:COG3914 211 PDNADAH-SNLLFALRQACDWEVYDRFEELLAALARGPSelspfaLLYLPDDDPAELLALARAWAQLVAAAA 281
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
329-548 4.98e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 4.98e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 329 DPNLrAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFvqk 408
Cdd:COG0457   4 DPDD-AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL--- 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 409 cyaeYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVL 488
Cdd:COG0457  80 ----NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG-IAL 154

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 489 QWRGDINLAVQLLNKAIEVDPkcELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAEL 548
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAAL--AALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 300-554 3.26e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.17  E-value: 3.26e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 300 LMRGTFHLLCGSYVESQQDFDAIIANDYADpnlrAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILL 379
Cdd:COG2956  12 YFKGLNYLLNGQPDKAIDLLEEALELDPET----VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 380 LLEQIEPALAEFEKAVSIAPNHAIAFvqkcyaeYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQF 459
Cdd:COG2956  88 KAGLLDRAEELLEKLLELDPDDAEAL-------RLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 460 TQAEEYYKKAMVLAPTNPALIVHQAiMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKAL 539
Cdd:COG2956 161 DEAIEALEKALKLDPDCARALLLLA-ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL 239

                       250
                ....*....|....*
gi 24583793 540 LYAKSQAELVHVYSL 554
Cdd:COG2956 240 ELDPSDDLLLALADL 254
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 334-548 7.22e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 84.27  E-value: 7.22e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 334 AYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEY 413
Cdd:COG3914   1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 414 RLSLLAG--DQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQWR 491
Cdd:COG3914  81 LELAALLlqALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLG-EALRRL 159

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 24583793 492 GDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAEL 548
Cdd:COG3914 160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 333-476 3.65e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 75.61  E-value: 3.65e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 333 RAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAiafvqkcYAE 412
Cdd:COG4783   3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP-------EAR 75

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24583793 413 YRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTN 476
Cdd:COG4783  76 LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
320-506 1.89e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 75.72  E-value: 1.89e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 320 DAIIANDYADPNLrAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAP 399
Cdd:COG4785  60 AERIDRALALPDL-AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDP 138

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 400 NHAIAFVQKCYAEYRLSllagdqrRLESVMHTFQNAIERFPSCVECYSLtaqvladqQQFTQAEEYYKKAMVLAPTNPAl 479
Cdd:COG4785 139 DYAYAYLNRGIALYYLG-------RYELAIADLEKALELDPNDPERALW--------LYLAERKLDPEKALALLLEDWA- 202

                       170       180
                ....*....|....*....|....*..
gi 24583793 480 ivhqaiMVLQWRGDINLAVQLLNKAIE 506
Cdd:COG4785 203 ------TAYLLQGDTEEARELFKLALA 223
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 295-506 1.18e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 74.38  E-value: 1.18e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 295 KVEALLMRGTFHLLCGSYVESQQDFDAIIANDYADPNlrayAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQR 374
Cdd:COG2956  75 RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE----ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 375 AQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQkcyaeyrLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLA 454
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDCARALLL-------LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE 223

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 24583793 455 DQQQFTQAEEYYKKAMVLAPTNPALIVhqAIMVLQWRGDINLAVQLLNKAIE 506
Cdd:COG2956 224 KLGDPEEALELLRKALELDPSDDLLLA--LADLLERKEGLEAALALLERQLR 273
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 432-539 4.35e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.57  E-value: 4.35e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 432 FQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQWRGDINLAVQLLNKAIEVDPKC 511
Cdd:COG4235   6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLA-EALLAAGDTEEAEELLERALALDPDN 84

                        90       100
                ....*....|....*....|....*...
gi 24583793 512 ELAYETLGTVEVQRAQLTRAVELFEKAL 539
Cdd:COG4235  85 PEALYLLGLAAFQQGDYAEAIAAWQKLL 112
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 297-539 2.55e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 69.73  E-value: 2.55e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   297 EALLMRGTFHLLCGSYVESQQDFDAIIAndyADPnlrAYAYIKRAALYIQLDQR--EKGIADFAEAERLNPENPDVYHQR 374
Cdd:TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALA---IDP---RSLYAKLGLAQLALAENrfDEARALIDEVLTADPGNVDALLLK 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   375 AQILLLLEQIEPALAEFEKAVSIAPNHAIafvqkcyAEYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLA 454
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIA-------VLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDF 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   455 DQQQFTQAEEYYKKAMVLAPTN-PALIVHQAIMVLQwrGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVE 533
Cdd:TIGR02917 273 QKKNYEDARETLQDALKSAPEYlPALLLAGASEYQL--GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA 350


                  ....*.
gi 24583793   534 LFEKAL 539
Cdd:TIGR02917 351 TLSPAL 356
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 411-539 4.59e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 4.59e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 411 AEYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQW 490
Cdd:COG4783   6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG-LALLK 84

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 24583793 491 RGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKAL 539
Cdd:COG4783  85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
297-470 3.27e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 3.27e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 297 EALLMRGTFHLLCGSYVESQQDFDAIIAndyADPNLrAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQ 376
Cdd:COG4785  74 QLYYERGVAYDSLGDYDLAIADFDQALE---LDPDL-AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 377 ILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRLSLLAGDQRRLESVMHTFQNaierfpscvecysltaqvladQ 456
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDWATAYLL---------------------Q 208

                       170
                ....*....|....
gi 24583793 457 QQFTQAEEYYKKAM 470
Cdd:COG4785 209 GDTEEARELFKLAL 222
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 298-538 4.03e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.88  E-value: 4.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   298 ALLMRGTFHLLCGSYVESQQDFDAIIANDYADPNLRAYAYIKraalYIQLDQREKGIADFAEAERLNPENPDVYHQRAQI 377
Cdd:TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA----YLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   378 LLLLEQIEPALAEFEKAVSIAPnhaiafvQKCYAEYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQ 457
Cdd:TIGR02917 407 KLSQGDPSEAIADLETAAQLDP-------ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG 479

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   458 QFTQAEEYYKKAMVLAPTNPALIVHQAIMVLQwRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEK 537
Cdd:TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQ-EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558


                  .
gi 24583793   538 A 538
Cdd:TIGR02917 559 A 559
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 296-462 1.24e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.24e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 296 VEALLMRGTFHLLCGSYVESQQDFDAIIANDYADpnlrAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRA 375
Cdd:COG3914 112 AEALFNLGNLLLALGRLEEALAALRRALALNPDF----AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 376 QILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRL---SLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQv 452
Cdd:COG3914 188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAcdwEVYDRFEELLAALARGPSELSPFALLYLPDDDPAEL- 266

                       170
                ....*....|
gi 24583793 453 LADQQQFTQA 462
Cdd:COG3914 267 LALARAWAQL 276
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 354-486 4.62e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.71  E-value: 4.62e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 354 IADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQkcYAEyrLSLLAGDQRRLESVmhtFQ 433
Cdd:COG4235   3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLD--LAE--ALLAAGDTEEAEEL---LE 75

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 24583793 434 NAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAIM 486
Cdd:COG4235  76 RALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 344-567 4.98e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.41  E-value: 4.98e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   344 YIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAiafvqkcYAEYRLSLLAGDQR 423
Cdd:TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF-------PAAANLARIDIQEG 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   424 RLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTN--PALIVHQAiMVLQwrGDINLAVQLL 501
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEiePALALAQY-YLGK--GQLKKALAIL 590

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   502 NKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALL----YAKSQAELVHVYSLRNAAVAQINVTKK 567
Cdd:TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAlqpdSALALLLLADAYAVMKNYAKAITSLKR 660
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 316-552 5.53e-09

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 58.00  E-value: 5.53e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 316 QQDFDAiiANDY------ADPNLRAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALA 389
Cdd:COG3071  63 LGDYER--RDEYlaqaleLAPEAELAVLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLE 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 390 ---EFEKAVSIAPNHAIAFVQKCYAEyRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYsltAQVLADQQQFTQAEEYY 466
Cdd:COG3071 141 llpALRKHKALSAEEAQALERRAYLG-LLRQAARDAEALKALWKALPRAERRDPELAAAY---ARALIALGDHDEAERLL 216

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 467 KKAMVLAPtNPALIvhqAIMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQ- 545
Cdd:COG3071 217 REALKRQW-DPRLV---RLYGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAe 292


                ....*....
gi 24583793 546 --AELVHVY 552
Cdd:COG3071 293 ayAELARLL 301
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
436-539 3.63e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 3.63e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 436 IERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAImVLQWRGDINLAVQLLNKAIEVDPKCELAY 515
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQALELDPDDAEAL 79

                        90       100
                ....*....|....*....|....
gi 24583793 516 ETLGTVEVQRAQLTRAVELFEKAL 539
Cdd:COG0457  80 NNLGLALQALGRYEEALEDYDKAL 103
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
88-185 3.83e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.15  E-value: 3.83e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793  88 KEANNYKTEGNNCYRNGKYDEAIKFYDKAIDKCPkehrtDMAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYY 167
Cdd:COG4785  71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDP-----DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145

                        90
                ....*....|....*...
gi 24583793 168 RRARAHEATKDMNECLDD 185
Cdd:COG4785 146 NRGIALYYLGRYELAIAD 163
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 315-563 4.21e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 4.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   315 SQQDFDAIIAndyADP-NLRAYayIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEK 393
Cdd:TIGR02917 518 AIQRFEKVLT---IDPkNLRAI--LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   394 AVSIAPNHAIAFVQKCyaeyRLSLLAGDQRrleSVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLA 473
Cdd:TIGR02917 593 AADAAPDSPEAWLMLG----RAQLAAGDLN---KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   474 PTNPALIVHQAIMVLQwRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKAL-LYAKSQ--AELVH 550
Cdd:TIGR02917 666 PDNTEAQIGLAQLLLA-AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALkRAPSSQnaIKLHR 744

                         250
                  ....*....|....*.
gi 24583793   551 VYSL---RNAAVAQIN 563
Cdd:TIGR02917 745 ALLAsgnTAEAVKTLE 760
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
343-441 4.46e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.94  E-value: 4.46e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 343 LYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAeFEKAVSIAPNHAIAFvqkcyaeYRLSLLAGDQ 422
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEAL-------LNLAELLLEL 72

                        90
                ....*....|....*....
gi 24583793 423 RRLESVMHTFQNAIERFPS 441
Cdd:COG3063  73 GDYDEALAYLERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
88-185 8.25e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.47  E-value: 8.25e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793  88 KEANNYKTEGNNCYRNGKYDEAIKFYDKAIDKCPkehrtDMAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYY 167
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP-----DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                        90
                ....*....|....*...
gi 24583793 168 RRARAHEATKDMNECLDD 185
Cdd:COG0457  81 NLGLALQALGRYEEALED 98
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
296-426 9.73e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.47  E-value: 9.73e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 296 VEALLMRGTFHLLCGSYVESQQDFDAIIANDYADpnlrAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRA 375
Cdd:COG0457  76 AEALNNLGLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 24583793 376 QILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRLSLLAGDQRRLE 426
Cdd:COG0457 152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 441-539 1.04e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 1.04e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 441 SCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGT 520
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLG-EILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                        90
                ....*....|....*....
gi 24583793 521 VEVQRAQLTRAVELFEKAL 539
Cdd:COG4783  81 ALLKAGDYDEALALLEKAL 99
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
69-185 1.21e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 1.21e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793  69 QELERNQKSAELGEK---LSPlKEANNYKTEGNNCYRNGKYDEAIKFYDKAIDKCPkehrtDMAIFYQNRAASYEMLKKW 145
Cdd:COG0457  19 RRLGRYEEAIEDYEKaleLDP-DDAEALYNLGLAYLRLGRYEEALADYEQALELDP-----DDAEALNNLGLALQALGRY 92

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 24583793 146 SNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMNECLDD 185
Cdd:COG0457  93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEA 132
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 293-440 2.23e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 2.23e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 293 QYKVEALLMRGTFHLLCGSYVESQQDFDAIIANDYADPNLRAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYH 372
Cdd:COG5010  13 YLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYY 92

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24583793 373 QRAQILLLLEQIEPALAEFEKAVSIAPNHAiafvqkcYAEYRLSLLAGDQRRLESVMHTFQNAIERFP 440
Cdd:COG5010  93 NLALLYSRSGDKDEAKEYYEKALALSPDNP-------NAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 446-539 2.40e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 2.40e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 446 YSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQR 525
Cdd:COG5010  57 ESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLA-LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135

                        90
                ....*....|....
gi 24583793 526 AQLTRAVELFEKAL 539
Cdd:COG5010 136 GQDDEAKAALQRAL 149
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 296-553 3.79e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.16  E-value: 3.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   296 VEALLMRGTFHLLCGSYVESQQDFDAIIANDYADPNlrayAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRA 375
Cdd:TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIA----VLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA 268

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   376 QILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRLsllagdqRRLESVMHTFQNAIERFPSCVECYSLTAQVLAD 455
Cdd:TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQL-------GNLEQAYQYLNQILKYAPNSHQARRLLASIQLR 341

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   456 QQQFTQAEEYYKKAMVLAPTNPALIVHQAIMVLQwRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELF 535
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLA-LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL 420

                         250       260
                  ....*....|....*....|
gi 24583793   536 EKA--LLYAKSQAELVHVYS 553
Cdd:TIGR02917 421 ETAaqLDPELGRADLLLILS 440
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
318-539 3.98e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.07  E-value: 3.98e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 318 DFDAIIANDYADPNLRAYAYIKRAALYIQLDQREKGIADFAEAER------LNPENPDVYHQRAQILLLLEQIEPALAEF 391
Cdd:COG4785  17 AAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGVAYDSLGDYDLAIADF 96

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 392 EKAVSIAPNHAIAFVQKCYAEYRlsllagdQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMV 471
Cdd:COG4785  97 DQALELDPDLAEAYNNRGLAYLL-------LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24583793 472 LAPTNPALIVHQAImvLQWRGDINLAVQLLNKAIevdpkcelayetlGTVEVQRAQLTRAVELFEKAL 539
Cdd:COG4785 170 LDPNDPERALWLYL--AERKLDPEKALALLLEDW-------------ATAYLLQGDTEEARELFKLAL 222
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 403-548 5.93e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.27  E-value: 5.93e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 403 IAFVQKCYAEYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVH 482
Cdd:COG2956   2 LLPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24583793 483 QAiMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAEL 548
Cdd:COG2956  82 LA-QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
452-539 1.07e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 1.07e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 452 VLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQWRGDINLAVQLlNKAIEVDPKCELAYETLGTVEVQRAQLTRA 531
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLG-LLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEA 78


                ....*...
gi 24583793 532 VELFEKAL 539
Cdd:COG3063  79 LAYLERAL 86
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 296-402 1.67e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.69  E-value: 1.67e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 296 VEALLMRGTFHLLCGSYVESQQDFDAIIAndyADPNlRAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRA 375
Cdd:COG4235  17 AEGWLLLGRAYLRLGRYDEALAAYEKALR---LDPD-NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLG 92

                        90       100
                ....*....|....*....|....*..
gi 24583793 376 QILLLLEQIEPALAEFEKAVSIAPNHA 402
Cdd:COG4235  93 LAAFQQGDYAEAIAAWQKLLALLPADA 119
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 356-509 1.77e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 1.77e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 356 DFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQKCYAEYRLSLLAGDQRRLESVMHTFQNA 435
Cdd:COG5010   1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24583793 436 IERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAiMVLQWRGDINLAVQLLNKAIEVDP 509
Cdd:COG5010  81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLA-ALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 336-548 2.07e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.85  E-value: 2.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   336 AYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFVQkcyaeYRL 415
Cdd:TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-----HRA 745

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   416 SLLAGDQRRLESVMHTFQNaieRFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAIMVLQwrGDIN 495
Cdd:TIGR02917 746 LLASGNTAEAVKTLEAWLK---THPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE--LKDP 820

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 24583793   496 LAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAEL 548
Cdd:TIGR02917 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
97-185 3.17e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 3.17e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793  97 GNNCYRNGKYDEAIKFYDKAIDKCPkehrtDMAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEAT 176
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALELDP-----DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157


                ....*....
gi 24583793 177 KDMNECLDD 185
Cdd:COG0457 158 GRYEEALEL 166
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 53-181 9.92e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.45  E-value: 9.92e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793  53 AKIEKQAISLDGTAPDQELERNQKSAELGEKLSPLKEANNYKTEGNNCYRNGKYDEAIKFYDKAIDKCPkehrtDMAIFY 132
Cdd:COG3914  41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNP-----DNAEAL 115

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 24583793 133 QNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMNE 181
Cdd:COG3914 116 FNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
363-568 1.27e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.83  E-value: 1.27e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 363 LNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFvqkcYAEYRLSLLAGDQRRLESVmhtfQNAIERFPSC 442
Cdd:COG4785   1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALAD----LALALAAAALAAAALAAER----IDRALALPDL 72

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 443 VECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAImVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVE 522
Cdd:COG4785  73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGL-AYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 24583793 523 VQRAQLTRAVELFEKALLYAKSQAELVHVYSLRNAAVAQINVTKKL 568
Cdd:COG4785 152 YYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALL 197
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 320-474 1.57e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 1.57e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 320 DAIIANDYADPNLRAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAP 399
Cdd:COG5010   6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24583793 400 NHAIAFvqkcyaeYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAP 474
Cdd:COG5010  86 NNPELY-------YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
421-510 3.85e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 3.85e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 421 DQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYyKKAMVLAPTNPALIVHQAIMVLQwRGDINLAVQL 500
Cdd:COG3063   4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLE-LGDYDEALAY 81

                        90
                ....*....|
gi 24583793 501 LNKAIEVDPK 510
Cdd:COG3063  82 LERALELDPS 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 101-181 4.06e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 4.06e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 101 YRNGKYDEAIKFYDKAIDKCPKEHRTDMAIFYqnRAASYEMLKKWSNVKEDCTASLEFNP---RYAKAYYRRARAHEATK 177
Cdd:COG1729   4 LKAGDYDEAIAAFKAFLKRYPNSPLAPDALYW--LGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELG 81


                ....
gi 24583793 178 DMNE 181
Cdd:COG1729  82 DYDK 85
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 310-404 4.52e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 4.52e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 310 GSYVESQQDFDAIIAnDYADPNLRAYAYIKRAALYIQLDQREKGIADFAEAERLNPEN---PDVYHQRAQILLLLEQIEP 386
Cdd:COG1729   7 GDYDEAIAAFKAFLK-RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDK 85

                        90
                ....*....|....*...
gi 24583793 387 ALAEFEKAVSIAPNHAIA 404
Cdd:COG1729  86 ARATLEELIKKYPDSEAA 103
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
382-509 4.68e-05

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 46.38  E-value: 4.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793  382 EQIEPALAEFEKAVSIAPNHAIAFVqkCYAEYRLSL----LAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQ 457
Cdd:PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYC--ALAECYLSMaqmgIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 24583793  458 QFTQAEEYYKKAMVLAPTNPALIVHQAIMvLQWRGDINLAVQLLNKAIEVDP 509
Cdd:PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWN-LFMAGQLEEALQTINECLKLDP 403
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 336-401 7.33e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 7.33e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24583793 336 AYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNH 401
Cdd:cd24142   2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 262-470 1.48e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 1.48e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 262 FLRAHLAFLEEKYEEIIPActeeiesseaeaqykveallmrgtfhllcgsyvesqqdFDAIIANDYADpnlrAYAYIKRA 341
Cdd:COG2956 114 RLLAEIYEQEGDWEKAIEV--------------------------------------LERLLKLGPEN----AHAYCELA 151

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 342 ALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHAIAFvqkcyaeYRLSLLAGD 421
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL-------PRLAELYEK 224

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 24583793 422 QRRLESVMHTFQNAIERFPSCVECYSLtAQVLADQQQFTQAEEYYKKAM 470
Cdd:COG2956 225 LGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQL 272
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 410-554 2.05e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.21  E-value: 2.05e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 410 YAEYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVL--------APTNPALIV 481
Cdd:COG3914   2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaaaaaaALLLLAALL 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24583793 482 HQAIMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAELVHVYSL 554
Cdd:COG3914  82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 316-484 3.52e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.53  E-value: 3.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   316 QQDFDAIIANDYAdpnlRAYAYIKRAAlyiQLDQREK----GIADFAEAERlNPENPDVYHQRAQilllleQIEPA---- 387
Cdd:PRK11447  356 QQGDAALKANNLA----QAERLYQQAR---QVDNTDSyavlGLGDVAMARK-DYAAAERYYQQAL------RMDPGntna 421

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   388 ---LAEFEKAVSiaPNHAIAFVQkcyaeyrlSLLAGDQRRLESVMHTFQNAIerfpscvecYSLTAQVLADQQQFTQAEE 464
Cdd:PRK11447  422 vrgLANLYRQQS--PEKALAFIA--------SLSASQRRSIDDIERSLQNDR---------LAQQAEALENQGKWAQAAE 482

                         170       180
                  ....*....|....*....|
gi 24583793   465 YYKKAMVLAPTNPALIVHQA 484
Cdd:PRK11447  483 LQRQRLALDPGSVWLTYRLA 502
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 328-400 3.85e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.85  E-value: 3.85e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24583793  328 ADPNlRAYAYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPN 400
Cdd:PLN03088  31 LDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 101-181 5.85e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 5.85e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 101 YRNGKYDEAIKFYDKAIDKCPKEhrtdmAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMN 180
Cdd:COG4783  49 LQLGDLDEAIVLLHEALELDPDE-----PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123


                .
gi 24583793 181 E 181
Cdd:COG4783 124 E 124
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 446-547 6.36e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 6.36e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 446 YSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAIMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQR 525
Cdd:COG5010  22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101

                        90       100
                ....*....|....*....|..
gi 24583793 526 AQLTRAVELFEKALLYAKSQAE 547
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPN 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
101-181 1.50e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 1.50e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 101 YRNGKYDEAIKFYDKAIdkcpkEHRTDMAIFYQNRAASYEMLKKWSNVkEDCTASLEFNPRYAKAYYRRARAHEATKDMN 180
Cdd:COG3063   3 LKLGDLEEAEEYYEKAL-----ELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYD 76


                .
gi 24583793 181 E 181
Cdd:COG3063  77 E 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 102-184 2.25e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 2.25e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 102 RNGKYDEAIKFYDKAIDKCPKEhrtdmAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMNE 181
Cdd:COG2956 122 QEGDWEKAIEVLERLLKLGPEN-----AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196


                ...
gi 24583793 182 CLD 184
Cdd:COG2956 197 AIA 199
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 336-587 2.32e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 2.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   336 AYIKRAALYIQLDQREKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPNHA-----IAF----- 405
Cdd:TIGR02917  24 ELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNqvlplLARayllq 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   406 --VQKCYAE-----------------YR---------------------------------LSLLAGDQRRLESVMHTFQ 433
Cdd:TIGR02917 104 gkFQQVLDElpgktllddegaaellaLRglaylglgqlelaqksyeqalaidprslyaklgLAQLALAENRFDEARALID 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   434 NAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAIMVLQwRGDINLAVQLLNKAIEVDPKCEL 513
Cdd:TIGR02917 184 EVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE-AGEFEEAEKHADALLKKAPNSPL 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793   514 AYETLGTVEVQRAQLTRAVELFEKALLYAKSQAELVHV-----YSLRNAAVAQINVTKKLGIDMNSVSA--MAQSGLMAQ 586
Cdd:TIGR02917 263 AHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLagaseYQLGNLEQAYQYLNQILKYAPNSHQArrLLASIQLRL 342


                  .
gi 24583793   587 G 587
Cdd:TIGR02917 343 G 343
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 101-181 2.81e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 2.81e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 101 YRNGKYDEAIKFYDKAIDKCPKEhrtdmAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMN 180
Cdd:COG5010  65 NKLGDFEESLALLEQALQLDPNN-----PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139


                .
gi 24583793 181 E 181
Cdd:COG5010 140 E 140
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 450-539 3.26e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 39.92  E-value: 3.26e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 450 AQVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAIMVLQwRGDINLAVQLLNKAIEVDPkcELAYE---TLGtvevqra 526
Cdd:cd24142   7 AEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLE-LGDVEEAREVLLRAIELDP--DGGYEkylYLG------- 76

                        90
                ....*....|....*.
gi 24583793 527 QLT---RAVELFEKAL 539
Cdd:cd24142  77 QLSggeEALQYYEKGI 92
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 492-552 4.87e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.86  E-value: 4.87e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24583793 492 GDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAELVHVY 552
Cdd:COG4783  18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 90-122 5.88e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 5.88e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 24583793    90 ANNYKTEGNNCYRNGKYDEAIKFYDKAIDKCPK 122
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 101-181 6.26e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 6.26e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793 101 YRNGKYDEAIKFYDKAIDKCPKEHRTdmaifYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKAYYRRARAHEATKDMN 180
Cdd:COG2956  87 LKAGLLDRAEELLEKLLELDPDDAEA-----LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161


                .
gi 24583793 181 E 181
Cdd:COG2956 162 E 162
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
94-188 6.52e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.36  E-value: 6.52e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583793  94 KTEGNNCYRNGKYDEAIKFYDKAIDKC--------PKEHRTDMAIFYQNRAASYEMLKKWSNVKEDCTASLEFNPRYAKA 165
Cdd:COG4785  30 LFAAVLALAIALADLALALAAAALAAAalaaeridRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109

                        90       100
                ....*....|....*....|...
gi 24583793 166 YYRRARAHEATKDMNECLDDVTA 188
Cdd:COG4785 110 YNNRGLAYLLLGDYDAALEDFDR 132
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 491-539 7.74e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 39.02  E-value: 7.74e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 24583793  491 RGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKAL 539
Cdd:PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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