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Conserved domains on  [gi|24584835|ref|NP_609842|]
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small glutamine-rich tetratricopeptide containing protein, isoform A [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
116-233 5.48e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.07  E-value: 5.48e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 116 AESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYS 195
Cdd:COG0457  42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 24584835 196 NMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQ 233
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
SGTA_dimer super family cl24944
Homodimerization domain of SGTA; SGTA_dimer is a short N-terminal domain at the start of SGTA ...
 7-48 4.22e-08

Homodimerization domain of SGTA; SGTA_dimer is a short N-terminal domain at the start of SGTA or small glutamine-rich tetratricopeptide repeat-containing proteins. It is the homodimerization domain of the SGTA, a heat-shock protein (HSP) co-chaperone involved in the targeting of tail-anchor membrane proteins to the endoplasmic reticulum. This N-terminal homodimerization domain mediates the association with a single copy of Get4 or Get5 proteins, providing a link to the rest of the GET pathway.


The actual alignment was detected with superfamily member pfam16546:

Pssm-ID: 465168  Cd Length: 64  Bit Score: 49.44  E-value: 4.22e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 24584835     7 QSFVRSFIDYLK---KQGDVmSPDQTESIEVAIQCLQAAFDLGDD 48
Cdd:pfam16546   1 KRLALSIIDFLStslSDGTL-SEDDAESLEVAIQCIAEAFEVDPD 44
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
116-233 5.48e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.07  E-value: 5.48e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 116 AESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYS 195
Cdd:COG0457  42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 24584835 196 NMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQ 233
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 111-203 2.41e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 73.86  E-value: 2.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   111 ESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPkNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRL 190
Cdd:TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90
                  ....*....|...
gi 24584835   191 GVAYSNMGNFEKA 203
Cdd:TIGR00990 201 ANAYDGLGKYADA 213
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 139-216 5.08e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 62.88  E-value: 5.08e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24584835  139 YNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPD 216
Cdd:PLN03088  25 YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102
TPR_11 pfam13414
TPR repeat;
123-164 1.72e-09

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 52.47  E-value: 1.72e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 24584835   123 GNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLG 164
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 184-217 1.84e-08

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 49.37  E-value: 1.84e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 24584835    184 SKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDN 217
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
SGTA_dimer pfam16546
Homodimerization domain of SGTA; SGTA_dimer is a short N-terminal domain at the start of SGTA ...
 7-48 4.22e-08

Homodimerization domain of SGTA; SGTA_dimer is a short N-terminal domain at the start of SGTA or small glutamine-rich tetratricopeptide repeat-containing proteins. It is the homodimerization domain of the SGTA, a heat-shock protein (HSP) co-chaperone involved in the targeting of tail-anchor membrane proteins to the endoplasmic reticulum. This N-terminal homodimerization domain mediates the association with a single copy of Get4 or Get5 proteins, providing a link to the rest of the GET pathway.


Pssm-ID: 465168  Cd Length: 64  Bit Score: 49.44  E-value: 4.22e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 24584835     7 QSFVRSFIDYLK---KQGDVmSPDQTESIEVAIQCLQAAFDLGDD 48
Cdd:pfam16546   1 KRLALSIIDFLStslSDGTL-SEDDAESLEVAIQCIAEAFEVDPD 44
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 155-221 4.85e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.54  E-value: 4.85e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24584835 155 NRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYK 221
Cdd:cd24142   5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
116-233 5.48e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.07  E-value: 5.48e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 116 AESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYS 195
Cdd:COG0457  42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 24584835 196 NMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQ 233
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 107-293 5.49e-21

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 93.52  E-value: 5.49e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 107 ERNPESlalAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKA 186
Cdd:COG3914 106 ALNPDN---AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA 182

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 187 YCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQTGRLREDLINMLSQPMVRNLFNNA---EID 263
Cdd:COG3914 183 LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLylpDDD 262

                       170       180       190
                ....*....|....*....|....*....|
gi 24584835 264 VEQLLSmlqnpmIMNTIRQQFGGGNAPTLP 293
Cdd:COG3914 263 PAELLA------LARAWAQLVAAAAAPELP 286
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
115-224 6.64e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.07  E-value: 6.64e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 115 LAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAY 194
Cdd:COG0457   7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                        90       100       110
                ....*....|....*....|....*....|
gi 24584835 195 SNMGNFEKAEQAYAKAIELEPDNEVYKSNL 224
Cdd:COG0457  87 QALGRYEEALEDYDKALELDPDDAEALYNL 116
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 113-274 1.35e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 89.67  E-value: 1.35e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 113 LALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGV 192
Cdd:COG3914  75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 193 AYSNMGNFEKAEQAYAKAIELEPDNEVYKSNL--------------EAARNARNQPPQTGRLRedlINMLSQPMVRNLFN 258
Cdd:COG3914 155 ALRRLGRLEEAIAALRRALELDPDNAEALNNLgnalqdlgrleeaiAAYRRALELDPDNADAH---SNLLFALRQACDWE 231

                       170
                ....*....|....*.
gi 24584835 259 NAEIDVEQLLSMLQNP 274
Cdd:COG3914 232 VYDRFEELLAALARGP 247
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
107-268 2.37e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.75  E-value: 2.37e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 107 ERNPESlalAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKA 186
Cdd:COG0457  70 ELDPDD---AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 187 YCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQTGRLREDLINMLSQPMVRNLFNNAEIDVEQ 266
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226


                ..
gi 24584835 267 LL 268
Cdd:COG0457 227 LA 228
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
115-217 4.31e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 81.50  E-value: 4.31e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 115 LAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAY 194
Cdd:COG4785  72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151

                        90       100
                ....*....|....*....|...
gi 24584835 195 SNMGNFEKAEQAYAKAIELEPDN 217
Cdd:COG4785 152 YYLGRYELAIADLEKALELDPND 174
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 114-236 4.78e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 79.47  E-value: 4.78e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 114 ALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVA 193
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 24584835 194 YSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQ 236
Cdd:COG4783  82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 102-215 5.37e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 74.23  E-value: 5.37e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 102 QSLYTERNPESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNN 181
Cdd:COG5010  40 DELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP 119

                        90       100       110
                ....*....|....*....|....*....|....
gi 24584835 182 NYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEP 215
Cdd:COG5010 120 DNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
143-234 1.25e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.04  E-value: 1.25e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 143 IAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKS 222
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                        90
                ....*....|..
gi 24584835 223 NLEAARNARNQP 234
Cdd:COG0457  81 NLGLALQALGRY 92
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 99-236 2.10e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.15  E-value: 2.10e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835  99 ELFQSLyTERNPESlalAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALV 178
Cdd:COG2956  97 ELLEKL-LELDPDD---AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 24584835 179 YNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQ 236
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 123-217 6.06e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.61  E-value: 6.06e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 123 GNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEK 202
Cdd:COG4783  45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124

                        90
                ....*....|....*
gi 24584835 203 AEQAYAKAIELEPDN 217
Cdd:COG4783 125 AIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
126-216 1.26e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 68.66  E-value: 1.26e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 126 LMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVtDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQ 205
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                        90
                ....*....|.
gi 24584835 206 AYAKAIELEPD 216
Cdd:COG3063  81 YLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 107-218 1.76e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 69.26  E-value: 1.76e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 107 ERNPESlalAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKA 186
Cdd:COG4235  11 AANPND---AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                        90       100       110
                ....*....|....*....|....*....|..
gi 24584835 187 YCRLGVAYSNMGNFEKAEQAYAKAIELEPDNE 218
Cdd:COG4235  88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 111-203 2.41e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 73.86  E-value: 2.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   111 ESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPkNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRL 190
Cdd:TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90
                  ....*....|...
gi 24584835   191 GVAYSNMGNFEKA 203
Cdd:TIGR00990 201 ANAYDGLGKYADA 213
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 113-224 4.04e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.60  E-value: 4.04e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 113 LALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGV 192
Cdd:COG2956   5 VAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                        90       100       110
                ....*....|....*....|....*....|..
gi 24584835 193 AYSNMGNFEKAEQAYAKAIELEPDNEVYKSNL 224
Cdd:COG2956  85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 99-236 1.23e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.06  E-value: 1.23e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835  99 ELFQSLYtERNPES----LALAESiknegnrLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCK 174
Cdd:COG2956  63 RIHQKLL-ERDPDRaealLELAQD-------YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24584835 175 SALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQ 236
Cdd:COG2956 135 RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 123-220 2.82e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.21  E-value: 2.82e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 123 GNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEK 202
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                        90
                ....*....|....*...
gi 24584835 203 AEQAYAKAIELEPDNEVY 220
Cdd:COG2956 231 ALELLRKALELDPSDDLL 248
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 139-216 5.08e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 62.88  E-value: 5.08e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24584835  139 YNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPD 216
Cdd:PLN03088  25 YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 113-236 5.85e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.97  E-value: 5.85e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 113 LALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGV 192
Cdd:COG5010  17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLAL 96

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 24584835 193 AYSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQ 236
Cdd:COG5010  97 LYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 134-236 3.28e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.32  E-value: 3.28e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 134 EALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIEL 213
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                        90       100
                ....*....|....*....|...
gi 24584835 214 EPDNEVYKSNLEAARNARNQPPQ 236
Cdd:COG4235  81 DPDNPEALYLLGLAAFQQGDYAE 103
TPR_11 pfam13414
TPR repeat;
123-164 1.72e-09

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 52.47  E-value: 1.72e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 24584835   123 GNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLG 164
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_1 pfam00515
Tetratricopeptide repeat;
184-217 2.36e-09

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 52.04  E-value: 2.36e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 24584835   184 SKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDN 217
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 99-233 4.13e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 4.13e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835  99 ELFQSLYtERNPESLALAESIkneGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALV 178
Cdd:COG2956  29 DLLEEAL-ELDPETVEAHLAL---GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLE 104

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 24584835 179 YNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKsnLEAARNARNQ 233
Cdd:COG2956 105 LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY--CELAELYLEQ 157
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 184-217 1.84e-08

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 49.37  E-value: 1.84e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 24584835    184 SKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDN 217
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
SGTA_dimer pfam16546
Homodimerization domain of SGTA; SGTA_dimer is a short N-terminal domain at the start of SGTA ...
 7-48 4.22e-08

Homodimerization domain of SGTA; SGTA_dimer is a short N-terminal domain at the start of SGTA or small glutamine-rich tetratricopeptide repeat-containing proteins. It is the homodimerization domain of the SGTA, a heat-shock protein (HSP) co-chaperone involved in the targeting of tail-anchor membrane proteins to the endoplasmic reticulum. This N-terminal homodimerization domain mediates the association with a single copy of Get4 or Get5 proteins, providing a link to the rest of the GET pathway.


Pssm-ID: 465168  Cd Length: 64  Bit Score: 49.44  E-value: 4.22e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 24584835     7 QSFVRSFIDYLK---KQGDVmSPDQTESIEVAIQCLQAAFDLGDD 48
Cdd:pfam16546   1 KRLALSIIDFLStslSDGTL-SEDDAESLEVAIQCIAEAFEVDPD 44
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
159-236 7.17e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.78  E-value: 7.17e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24584835 159 AHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQaYAKAIELEPDNEVYKSNLEAARNARNQPPQ 236
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 126-233 9.59e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.60  E-value: 9.59e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 126 LMKENKYNEALLQYNRAIAFDPKNPIfycnRAAAHIRLGENERAVTDCKSALVY----------NNNYSKAYCRLGVAYS 195
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLKRYPNSPL----APDALYWLGEAYYALGDYDEAAEAfekllkrypdSPKAPDALLKLGLSYL 78

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 24584835 196 NMGNFEKAEQAYAKAIELEPDNevyksnlEAARNARNQ 233
Cdd:COG1729  79 ELGDYDKARATLEELIKKYPDS-------EAAKEARAR 109
TPR_8 pfam13181
Tetratricopeptide repeat;
185-216 2.84e-07

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 46.24  E-value: 2.84e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 24584835   185 KAYCRLGVAYSNMGNFEKAEQAYAKAIELEPD 216
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 111-217 9.41e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.37  E-value: 9.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   111 ESLALAESIKNEGNRLMkeNKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRL 190
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLK--GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405

                          90       100
                  ....*....|....*....|....*..
gi 24584835   191 GVAYSNMGNFEKAEQAYAKAIELEPDN 217
Cdd:TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDF 432
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 185-216 1.41e-06

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 44.05  E-value: 1.41e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 24584835   185 KAYCRLGVAYSNMGNFEKAEQAYAKAIELEPD 216
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
107-177 4.30e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 4.30e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24584835 107 ERNPESlalAESIKNEGNRLMKENKYNEALlQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSAL 177
Cdd:COG3063  20 ELDPDN---ADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
177-236 7.70e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 7.70e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 177 LVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQ 236
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEE 60
TPR_12 pfam13424
Tetratricopeptide repeat;
153-213 2.49e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.99  E-value: 2.49e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24584835   153 YCNRAAAHIRLGENERAVTDCKSAL-----VYNNNY---SKAYCRLGVAYSNMGNFEKAEQAYAKAIEL 213
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALeiarrLLGPDHpltATTLLNLGRLYLELGRYEEALELLERALAL 74
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 155-221 4.85e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.54  E-value: 4.85e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24584835 155 NRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYK 221
Cdd:cd24142   5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 92-217 9.18e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 9.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835    92 PNNID-MFELFQSLYTERNPESL------ALAESIKN------EGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAA 158
Cdd:TIGR02917 156 PRSLYaKLGLAQLALAENRFDEAralideVLTADPGNvdalllKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT 235

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   159 AHIRLGENERAVTDCKSALVYNNNYSKA-YCRLGVAYSNmGNFEKAEQAYAKAIELEPDN 217
Cdd:TIGR02917 236 ILIEAGEFEEAEKHADALLKKAPNSPLAhYLKALVDFQK-KNYEDARETLQDALKSAPEY 294
TOM20_plant pfam06552
Plant specific mitochondrial import receptor subunit TOM20; This family consists of several ...
 169-252 1.14e-03

Plant specific mitochondrial import receptor subunit TOM20; This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.


Pssm-ID: 284068 [Multi-domain]  Cd Length: 187  Bit Score: 39.50  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   169 AVTDCKSALVYNNNYSKAYCRLGVAYSNMG-----------NFEKAEQAYAKAIELEPDNEVYKSNLEAARNArnqpPQ- 236
Cdd:pfam06552  54 AISKLEEALTIDPKKHDALWCIGNAYTSHAfltpdpteakeNFDKATQFFQQAVDEQPDNDLYRKSLEMAAKA----PEl 129

                          90
                  ....*....|....*..
gi 24584835   237 -TGRLREdliNMLSQPM 252
Cdd:pfam06552 130 hTEFHKQ---GLGQQIM 143
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 135-224 1.26e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 1.26e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835 135 ALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELE 214
Cdd:COG5010   5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                        90
                ....*....|
gi 24584835 215 PDNEVYKSNL 224
Cdd:COG5010  85 PNNPELYYNL 94
TPR_17 pfam13431
Tetratricopeptide repeat;
139-170 2.69e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.83  E-value: 2.69e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 24584835   139 YNRAIAFDPKNPIFYCNRAAAHIRLGENERAV 170
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 130-280 2.91e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   130 NKYNEALLQYNRAIAFDPKNPifYCNRAAAHIRLGENE--RAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAY 207
Cdd:TIGR02917 309 GNLEQAYQYLNQILKYAPNSH--QARRLLASIQLRLGRvdEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   208 AKAIELEPDNEVYK-----------------SNLEAARNARNQPPQTGRLredlinMLSQPMVRNLFNNAEIDVEQLL-S 269
Cdd:TIGR02917 387 AKATELDPENAAARtqlgisklsqgdpseaiADLETAAQLDPELGRADLL------LILSYLRSGQFDKALAAAKKLEkK 460

                         170
                  ....*....|.
gi 24584835   270 MLQNPMIMNTI 280
Cdd:TIGR02917 461 QPDNASLHNLL 471
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 130-220 3.04e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.20  E-value: 3.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   130 NKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAK 209
Cdd:TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458

                          90
                  ....*....|..
gi 24584835   210 AIELEPDN-EVY 220
Cdd:TIGR00990 459 CKKNFPEApDVY 470
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 104-216 3.12e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 3.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   104 LYTERNPESLALAESIKnegnrlMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNY 183
Cdd:TIGR02917 323 KYAPNSHQARRLLASIQ------LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396

                          90       100       110
                  ....*....|....*....|....*....|...
gi 24584835   184 SKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPD 216
Cdd:TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429
TPR_19 pfam14559
Tetratricopeptide repeat;
164-222 3.54e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.64  E-value: 3.54e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 24584835   164 GENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKS 222
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TPR_7 pfam13176
Tetratricopeptide repeat;
186-218 3.96e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 34.44  E-value: 3.96e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 24584835   186 AYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNE 218
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 107-234 7.40e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.14  E-value: 7.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   107 ERNPESLALAesiKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKA 186
Cdd:TIGR02917 561 ELNPQEIEPA---LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 24584835   187 YCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAARNARNQP 234
Cdd:TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 106-217 9.21e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.76  E-value: 9.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24584835   106 TERNPESLALAESIknegnrLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSK 185
Cdd:TIGR02917 359 DPDDPAALSLLGEA------YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24584835   186 A----------------------------------YCRLGVAYSNMGNFEKAEQAYAKAIELEPDN 217
Cdd:TIGR02917 433 AdlllilsylrsgqfdkalaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498
TPR_17 pfam13431
Tetratricopeptide repeat;
173-205 9.30e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 33.29  E-value: 9.30e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 24584835   173 CKSALVYNNNYSKAYCRLGVAYSNMGNFEKAEQ 205
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 116-148 9.64e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 33.27  E-value: 9.64e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 24584835   116 AESIKNEGNRLMKENKYNEALLQYNRAIAFDPK 148
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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