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Conserved domains on  [gi|20302061|ref|NP_620238|]
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ATP synthase subunit O, mitochondrial precursor [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OSCP pfam00213
ATP synthase delta (OSCP) subunit; The ATP D subunit from E. coli is the same as the OSCP ...
 37-209 8.92e-54

ATP synthase delta (OSCP) subunit; The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.


:

Pssm-ID: 459714  Cd Length: 172  Bit Score: 169.62  E-value: 8.92e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061    37 IEGRYATALYSAASKQKRLDQVEKELLRVGQLL-KDPKVSLAVLNPYIKRSIKVKSLKDITtKEKFSPLTANLMNLLAEN 115
Cdd:pfam00213   1 IARRYAKALFELAKEKGKLDQVEEELEALEAALaENPDLAAFLSNPTISAEEKKALLLELF-KGLLSPLTLNFLKLLAEN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   116 GRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQIlNLEVKTDPSIMGGMIVRIGEKYVD 195
Cdd:pfam00213  80 GRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQLEKLAAALEKKTGKKKV-KLENKVDPSLIGGVVVRVGDKVID 158

                         170
                  ....*....|....
gi 20302061   196 MSAKSKIQKLSKAM 209
Cdd:pfam00213 159 GSVKGKLERLKRAL 172
 
Name Accession Description Interval E-value
OSCP pfam00213
ATP synthase delta (OSCP) subunit; The ATP D subunit from E. coli is the same as the OSCP ...
 37-209 8.92e-54

ATP synthase delta (OSCP) subunit; The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.


Pssm-ID: 459714  Cd Length: 172  Bit Score: 169.62  E-value: 8.92e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061    37 IEGRYATALYSAASKQKRLDQVEKELLRVGQLL-KDPKVSLAVLNPYIKRSIKVKSLKDITtKEKFSPLTANLMNLLAEN 115
Cdd:pfam00213   1 IARRYAKALFELAKEKGKLDQVEEELEALEAALaENPDLAAFLSNPTISAEEKKALLLELF-KGLLSPLTLNFLKLLAEN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   116 GRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQIlNLEVKTDPSIMGGMIVRIGEKYVD 195
Cdd:pfam00213  80 GRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQLEKLAAALEKKTGKKKV-KLENKVDPSLIGGVVVRVGDKVID 158

                         170
                  ....*....|....
gi 20302061   196 MSAKSKIQKLSKAM 209
Cdd:pfam00213 159 GSVKGKLERLKRAL 172
AtpH COG0712
FoF1-type ATP synthase, delta subunit [Energy production and conversion]; FoF1-type ATP ...
 36-209 1.46e-43

FoF1-type ATP synthase, delta subunit [Energy production and conversion]; FoF1-type ATP synthase, delta subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440476  Cd Length: 178  Bit Score: 143.76  E-value: 1.46e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  36 GIEGRYATALYSAASKQKRLDQVEKELLRVGQLLK-DPKVSLAVLNPYIKRSIKVKSLKDITtKEKFSPLTANLMNLLAE 114
Cdd:COG0712   5 TIARRYAKALFELAKEKGALDEVEEELFALAALLAeNPELRALLSSPVISAEEKKELLEALF-GGKLSPETLNFLKLLVE 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061 115 NGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLskGQILNLEVKTDPSIMGGMIVRIGEKYV 194
Cdd:COG0712  84 NGRLALLPEIAEEFEELAAERRGIVVAEVTSAVPLSEEQLERLAAALEKKT--GKKVELNVKVDPSLIGGVVVRVGDKVI 161

                       170
                ....*....|....*
gi 20302061 195 DMSAKSKIQKLSKAM 209
Cdd:COG0712 162 DGSVRGRLNRLRRAL 176
PRK05758 PRK05758
F0F1 ATP synthase subunit delta; Validated
 34-209 2.50e-36

F0F1 ATP synthase subunit delta; Validated


Pssm-ID: 235593  Cd Length: 177  Bit Score: 125.28  E-value: 2.50e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   34 VYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPYIKRSIKVKSLKDITtkEKFSPLTANLMNLLA 113
Cdd:PRK05758   4 LSTVARPYAKALFEVALEKGSLDAWSEELTFLAEVAENEDLAALLSSPLVSAEQKKKLLAAVF--KSLSEYVQNFLKVLA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  114 ENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLskGQILNLEVKTDPSIMGGMIVRIGEKY 193
Cdd:PRK05758  82 ENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRL--GRKVKLNEKVDPSLIGGVIIKVGDRV 159

                        170
                 ....*....|....*.
gi 20302061  194 VDMSAKSKIQKLSKAM 209
Cdd:PRK05758 160 IDGSVRGKLERLKDAL 175
ATP_synt_delta TIGR01145
ATP synthase, F1 delta subunit; This model describes the ATP synthase delta subunit in ...
 40-209 1.36e-23

ATP synthase, F1 delta subunit; This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 130215 [Multi-domain]  Cd Length: 172  Bit Score: 92.38  E-value: 1.36e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061    40 RYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVL-NPYIKRSIKVKSLKDITtKEKFSPLTANLMNLLAENGRL 118
Cdd:TIGR01145   4 PYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLsNPLISAEKKKEFIKNVF-GEQLDESSLNLLLLLAENGRL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   119 GNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQIlNLEVKTDPSIMGGMIVRIGEKYVDMSA 198
Cdd:TIGR01145  83 AALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGAAKV-KLNCKVDKDLIGGVIIRIGDRVIDGSV 161

                         170
                  ....*....|.
gi 20302061   199 KSKIQKLSKAM 209
Cdd:TIGR01145 162 RGQLKRLSRQL 172
 
Name Accession Description Interval E-value
OSCP pfam00213
ATP synthase delta (OSCP) subunit; The ATP D subunit from E. coli is the same as the OSCP ...
 37-209 8.92e-54

ATP synthase delta (OSCP) subunit; The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.


Pssm-ID: 459714  Cd Length: 172  Bit Score: 169.62  E-value: 8.92e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061    37 IEGRYATALYSAASKQKRLDQVEKELLRVGQLL-KDPKVSLAVLNPYIKRSIKVKSLKDITtKEKFSPLTANLMNLLAEN 115
Cdd:pfam00213   1 IARRYAKALFELAKEKGKLDQVEEELEALEAALaENPDLAAFLSNPTISAEEKKALLLELF-KGLLSPLTLNFLKLLAEN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   116 GRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQIlNLEVKTDPSIMGGMIVRIGEKYVD 195
Cdd:pfam00213  80 GRLGLLPEIAEEFEELLDEARGIVEAEVTSAVPLSEEQLEKLAAALEKKTGKKKV-KLENKVDPSLIGGVVVRVGDKVID 158

                         170
                  ....*....|....
gi 20302061   196 MSAKSKIQKLSKAM 209
Cdd:pfam00213 159 GSVKGKLERLKRAL 172
AtpH COG0712
FoF1-type ATP synthase, delta subunit [Energy production and conversion]; FoF1-type ATP ...
 36-209 1.46e-43

FoF1-type ATP synthase, delta subunit [Energy production and conversion]; FoF1-type ATP synthase, delta subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440476  Cd Length: 178  Bit Score: 143.76  E-value: 1.46e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  36 GIEGRYATALYSAASKQKRLDQVEKELLRVGQLLK-DPKVSLAVLNPYIKRSIKVKSLKDITtKEKFSPLTANLMNLLAE 114
Cdd:COG0712   5 TIARRYAKALFELAKEKGALDEVEEELFALAALLAeNPELRALLSSPVISAEEKKELLEALF-GGKLSPETLNFLKLLVE 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061 115 NGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLskGQILNLEVKTDPSIMGGMIVRIGEKYV 194
Cdd:COG0712  84 NGRLALLPEIAEEFEELAAERRGIVVAEVTSAVPLSEEQLERLAAALEKKT--GKKVELNVKVDPSLIGGVVVRVGDKVI 161

                       170
                ....*....|....*
gi 20302061 195 DMSAKSKIQKLSKAM 209
Cdd:COG0712 162 DGSVRGRLNRLRRAL 176
PRK05758 PRK05758
F0F1 ATP synthase subunit delta; Validated
 34-209 2.50e-36

F0F1 ATP synthase subunit delta; Validated


Pssm-ID: 235593  Cd Length: 177  Bit Score: 125.28  E-value: 2.50e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   34 VYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPYIKRSIKVKSLKDITtkEKFSPLTANLMNLLA 113
Cdd:PRK05758   4 LSTVARPYAKALFEVALEKGSLDAWSEELTFLAEVAENEDLAALLSSPLVSAEQKKKLLAAVF--KSLSEYVQNFLKVLA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  114 ENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLskGQILNLEVKTDPSIMGGMIVRIGEKY 193
Cdd:PRK05758  82 ENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRL--GRKVKLNEKVDPSLIGGVIIKVGDRV 159

                        170
                 ....*....|....*.
gi 20302061  194 VDMSAKSKIQKLSKAM 209
Cdd:PRK05758 160 IDGSVRGKLERLKDAL 175
PRK13429 PRK13429
F0F1 ATP synthase subunit delta; Provisional
 40-205 2.65e-31

F0F1 ATP synthase subunit delta; Provisional


Pssm-ID: 237386  Cd Length: 181  Bit Score: 112.61  E-value: 2.65e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   40 RYATALYSAASKQKRLDQVEKELLRVGQLLKD-PKVSLAVLNPYIKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRL 118
Cdd:PRK13429   9 RYAKALFQLAKEKGQLDSVYEELKQLAELLEDsPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLADRRRL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  119 GNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLskGQILNLEVKTDPSIMGGMIVRIGEKYVDMSA 198
Cdd:PRK13429  89 GILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMT--GKKVELDTAVDPSLIGGVVVKIGDKVLDASV 166


                 ....*..
gi 20302061  199 KSKIQKL 205
Cdd:PRK13429 167 RTQLRRL 173
ATP_synt_delta TIGR01145
ATP synthase, F1 delta subunit; This model describes the ATP synthase delta subunit in ...
 40-209 1.36e-23

ATP synthase, F1 delta subunit; This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 130215 [Multi-domain]  Cd Length: 172  Bit Score: 92.38  E-value: 1.36e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061    40 RYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVL-NPYIKRSIKVKSLKDITtKEKFSPLTANLMNLLAENGRL 118
Cdd:TIGR01145   4 PYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLsNPLISAEKKKEFIKNVF-GEQLDESSLNLLLLLAENGRL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   119 GNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQIlNLEVKTDPSIMGGMIVRIGEKYVDMSA 198
Cdd:TIGR01145  83 AALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGAAKV-KLNCKVDKDLIGGVIIRIGDRVIDGSV 161

                         170
                  ....*....|.
gi 20302061   199 KSKIQKLSKAM 209
Cdd:TIGR01145 162 RGQLKRLSRQL 172
PRK13430 PRK13430
F0F1 ATP synthase subunit delta; Provisional
 34-209 3.99e-18

F0F1 ATP synthase subunit delta; Provisional


Pssm-ID: 237387 [Multi-domain]  Cd Length: 271  Bit Score: 79.99  E-value: 3.99e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   34 VYGIEGRYATALYSAASKQKRLDQVEKELLRVGQ-LLKDPKVSLAVLNPYIKRSIKVKSLKDITTKeKFSPLTANLMNLL 112
Cdd:PRK13430  96 ADALEELGVRALLASAEAQGALDDVEDELFRLGRiLASNPELRLALSDRAAPAEAKRELLARLLYG-KVTPVTERLAEQA 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  113 AENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVktDPSIMGGMIVRIGEK 192
Cdd:PRK13430 175 VGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGRPVHLNSEV--DPSVLGGMRVQVGDE 252

                        170
                 ....*....|....*..
gi 20302061  193 YVDMSAKSKIQKLSKAM 209
Cdd:PRK13430 253 VIDGSVAGRLERLRRRL 269
atpD CHL00119
ATP synthase CF1 delta subunit; Validated
 41-207 5.20e-15

ATP synthase CF1 delta subunit; Validated


Pssm-ID: 177042  Cd Length: 184  Bit Score: 70.01  E-value: 5.20e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   41 YATALYSAASKQKRLDQVEKELLRVGQLLKD-PKVSLAVLNPYIKRSIKVKSLKDiTTKEKFSPLTANLMNLLAENGRLG 119
Cdd:CHL00119  12 YAEALLEFAKEKNIMEQITADIQLILTFLNEsPELKKFLANPLISKNAKKEVIKK-TFGSQINENTLKFLMVLVDRGRIA 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  120 NTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQIlNLEVKTDPSIMGGMIVRIGEKYVDMSAK 199
Cdd:CHL00119  91 LLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKEI-KLVITVDPSLIGGFLIKIGSKVIDTSIK 169


                 ....*...
gi 20302061  200 SKIQKLSK 207
Cdd:CHL00119 170 GQLKQLAS 177
PRK13436 PRK13436
F0F1 ATP synthase subunit delta; Provisional
 41-209 1.65e-14

F0F1 ATP synthase subunit delta; Provisional


Pssm-ID: 184053  Cd Length: 179  Bit Score: 68.54  E-value: 1.65e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   41 YATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRSIKVKSLKDITTkEKFSPLTANLMNLLAENGRLG 119
Cdd:PRK13436  11 YAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYfIDKEEKFKIIDKIFS-AKIDIYLVNFLKILAKNNLFI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  120 NTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVktDPSIMGGMIVRIGEKYVDMSAK 199
Cdd:PRK13436  90 YIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLNKKVHLVNKI--DPKLIAGIKIKVDNKVFENSIK 167

                        170
                 ....*....|
gi 20302061  200 SKIQKLSKAM 209
Cdd:PRK13436 168 SKLKELKKQV 177
PRK13434 PRK13434
F0F1 ATP synthase subunit delta; Provisional
 36-209 3.24e-10

F0F1 ATP synthase subunit delta; Provisional


Pssm-ID: 139571  Cd Length: 184  Bit Score: 57.25  E-value: 3.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   36 GIEGRYATALYSAASKqkrLDQVEKELLRVGQLL-KDPKVSLAVLNPYIKRSIKVKSLKDiTTKEKFSPLTANLMNLLAE 114
Cdd:PRK13434   5 GVSKVYASALLGAANS---PEEVEQELGDLVQLLfKDEKIRNFFLSPTVSPEEKEQTLAK-NLRGKISDITLNFLGVLLN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  115 NGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLskGQILNLEVKTDPSIMGGMIVRIGEKYV 194
Cdd:PRK13434  81 KGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKF--KSEFILEVSEDKNLLGGFVVQFNDLKI 158

                        170
                 ....*....|....*
gi 20302061  195 DMSAKSKIQKLSKAM 209
Cdd:PRK13434 159 EKSIASQLGEIKKAM 173
PRK13441 PRK13441
F0F1 ATP synthase subunit delta; Provisional
 37-207 4.58e-09

F0F1 ATP synthase subunit delta; Provisional


Pssm-ID: 184054  Cd Length: 180  Bit Score: 53.60  E-value: 4.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   37 IEGRYATALYSAASKQKRldqvEKELLRVGQLLKDPKVSLAVL--NPYIKRSIKVKSLKDITT--KEKFSPLTANLMNLL 112
Cdd:PRK13441   6 IASKYARALLNVAIELEK----EEEYGEFLDLVCQIYESAKEFfdNPIVKPEKKVSLIKEIMKefGQEMDEFFENFLNLV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  113 AENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEavlSELKtVLNSFLSK--GQILNLEVKTDPSIMGGMIVRIG 190
Cdd:PRK13441  82 FENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSD---EELK-LLRKFVRKyvLRDPVFEETIDESLIAGAVVEFE 157

                        170
                 ....*....|....*..
gi 20302061  191 EKYVDMSAKSKIQKLSK 207
Cdd:PRK13441 158 GKRLDVTVQGRLKKIAR 174
PRK13428 PRK13428
F0F1 ATP synthase subunit delta; Provisional
 34-204 3.18e-08

F0F1 ATP synthase subunit delta; Provisional


Pssm-ID: 184048 [Multi-domain]  Cd Length: 445  Bit Score: 52.81  E-value: 3.18e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   34 VYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLK-DPKVSLAVLNPYIKRSIKVKSL-KDITTKEKFSPLTANLMNL 111
Cdd:PRK13428 268 IDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDaQPRLAILLSDYTVPADGRVALLrKVLGGASTVNPVTVALLSQ 347

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061  112 LAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLskGQILNLEVKTDPSIMGGMIVRIGE 191
Cdd:PRK13428 348 TVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIY--GRPVSVQLHIDPELLGGLSIAVGD 425

                        170
                 ....*....|...
gi 20302061  192 KYVDMSAKSKIQK 204
Cdd:PRK13428 426 EVIDGTLSSRLAA 438
PRK08474 PRK08474
F0F1 ATP synthase subunit delta; Validated
 40-163 2.45e-06

F0F1 ATP synthase subunit delta; Validated


Pssm-ID: 236271  Cd Length: 176  Bit Score: 46.12  E-value: 2.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20302061   40 RYATALYSAASKqKRLDQVEKELLRVGQLLKDPKVSLAVLNPYIKRSIKVKSLKDITTKEkfSPLTANLMNLLAENGRLg 119
Cdd:PRK08474   8 RYAKALLSSLSS-DELNDIYSNLKILSSAFADEKFKEIISSPEISKEQKIEFLLSFVDNA--NAKFQNFIKLLAENKRL- 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 20302061  120 ntqGVISAFSTIM----SVHRGEVPCTVTTAFPLDEAVLSELKTVLNS 163
Cdd:PRK08474  84 ---ELIPAIAKELerqiALKENEYVGVVYSNEKLSEETLKKLEEKLSK 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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