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Conserved domains on  [gi|21704164|ref|NP_663554|]
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myb-related transcription factor, partner of profilin isoform 1 [Mus musculus]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 10620601)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may bind DNA and function as a transcription factor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Myb_DNA-bind_5 pfam13873
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT ...
 20-96 7.83e-18

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT like DNA binding domains. This family is greatly expanded in arthropods and higher eukaryotes.


:

Pssm-ID: 433544  Cd Length: 78  Bit Score: 77.32  E-value: 7.83e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21704164    20 RKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDSIATKINGITSWKRTGQEVQKRWNDFKRRTKEKLA 96
Cdd:pfam13873   1 RKKNFSEEEKEVLVELVEKRKHILEGKKSDAATWKAKNRAWKEIAARVNAIGGVHRTAEELKKKWRDLKRRTKRKLA 77
 
Name Accession Description Interval E-value
Myb_DNA-bind_5 pfam13873
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT ...
 20-96 7.83e-18

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT like DNA binding domains. This family is greatly expanded in arthropods and higher eukaryotes.


Pssm-ID: 433544  Cd Length: 78  Bit Score: 77.32  E-value: 7.83e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21704164    20 RKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDSIATKINGITSWKRTGQEVQKRWNDFKRRTKEKLA 96
Cdd:pfam13873   1 RKKNFSEEEKEVLVELVEKRKHILEGKKSDAATWKAKNRAWKEIAARVNAIGGVHRTAEELKKKWRDLKRRTKRKLA 77
MADF smart00595
subfamily of SANT domain;
32-108 7.02e-03

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 35.41  E-value: 7.02e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21704164     32 LIREVRaHYPQLYGAQSRRVSVAE-RRRVWDSIATKINgitswkRTGQEVQKRWNDFKRRTKEKLARVPHSTQGAGPA 108
Cdd:smart00595   2 LIELVR-ERPCLWDRRHPDYRNKEeKRKAWEEIAEELG------LSVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK 72
 
Name Accession Description Interval E-value
Myb_DNA-bind_5 pfam13873
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT ...
 20-96 7.83e-18

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT like DNA binding domains. This family is greatly expanded in arthropods and higher eukaryotes.


Pssm-ID: 433544  Cd Length: 78  Bit Score: 77.32  E-value: 7.83e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21704164    20 RKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDSIATKINGITSWKRTGQEVQKRWNDFKRRTKEKLA 96
Cdd:pfam13873   1 RKKNFSEEEKEVLVELVEKRKHILEGKKSDAATWKAKNRAWKEIAARVNAIGGVHRTAEELKKKWRDLKRRTKRKLA 77
MADF smart00595
subfamily of SANT domain;
32-108 7.02e-03

subfamily of SANT domain;


Pssm-ID: 214738  Cd Length: 89  Bit Score: 35.41  E-value: 7.02e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21704164     32 LIREVRaHYPQLYGAQSRRVSVAE-RRRVWDSIATKINgitswkRTGQEVQKRWNDFKRRTKEKLARVPHSTQGAGPA 108
Cdd:smart00595   2 LIELVR-ERPCLWDRRHPDYRNKEeKRKAWEEIAEELG------LSVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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