|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
645-1195 |
2.31e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 104.63 E-value: 2.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 645 ELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLS 724
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 725 AVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKElmevDQNQQITIIKKELAETTNQLSEC 804
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA----EAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 805 QERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVN 884
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 885 EEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVlqqkhqENTQYYAEIQRLQPFEQQVk 964
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV------EAAYEAALEAALAAALQNI- 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 965 eLVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQA--STLRDLERLRAHLLEIEELHTQETVELQR 1042
Cdd:COG1196 552 -VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1043 DLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALEQFQ 1122
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28571201 1123 NDKDHDIEMATQRIRREMQAQLDRQGQLQLEMSGLQQQLAEANQGLRAAARLSDQleagQQTIAVLRDEVESL 1195
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL----ERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-973 |
2.59e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 2.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 169 LEQLNEQLNVSLEELDSQHELAMRdVLEHKTQLAgqvASLKQLQADRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQ 248
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEKAER-YKELKAELR---ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 249 RRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAKEKKTSESSSNSSstgKHSEDEFIVVRQA 328
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES---KLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 329 DATGSGSASgsdrdpdadvtsppsKEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAE 408
Cdd:TIGR02168 344 EKLEELKEE---------------LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 409 KEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKTSiaqakfRQAIAEEKQEITDLDD 488
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL------REELEEAEQALDAAER 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 489 adseygtfELDKLRALLQAEIEDRLDSSFPQQKLERAWNALKDRWHRLDLVEQrLVDVQN--------------QQLVSE 554
Cdd:TIGR02168 483 --------ELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE-LISVDEgyeaaieaalggrlQAVVVE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 555 HEKKTLEAdisQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLE--LASLSSQQQMETH 632
Cdd:TIGR02168 554 NLNAAKKA---IAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkaLSYLLGGVLVVDD 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 633 LISSPEktpvdselLAKMEQKEQEYLQLQEQLAF-----AKTELDKRNKLLERNGEqltkQQQQNQADQKKLEELSQLRE 707
Cdd:TIGR02168 631 LDNALE--------LAKKLRPGYRIVTLDGDLVRpggviTGGSAKTNSSILERRRE----IEELEEKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 708 TLQRRDEDLKELEEQLSAVRQDLDEKSIQmkisQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELmevdQNQQI 787
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQ----ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE----LEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 788 TIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEE----RTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAK 863
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 864 EQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLqgqlaadesQQLQQTIDGLGQEKNELIKVLQQKH 943
Cdd:TIGR02168 851 SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL---------EELSEELRELESKRSELRRELEELR 921
|
810 820 830
....*....|....*....|....*....|
gi 28571201 944 QENTQYYAEIQRLQPFEQQVKELVKEREKL 973
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-975 |
1.77e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 150 VDIALGNDDVVRLNNRIAELEQLNEQLNVSLEELDSQ----------HELAMRDVLEHKTQLAGQVASLKQLQADrlVEH 219
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAElqeleekleeLRLEVSELEEEIEELQKELYALANEISR--LEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 220 ELsnARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLdkrrQDTAELIERVRVAETERERLLKDLEETRQA 299
Cdd:TIGR02168 303 QK--QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL----EELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 300 KEKKTSESSSNSSSTGKHSEDEFIVVRQADATGSGSASgsdrdpdadvtsppSKEKLRDRLVSLESQISELTLANTQLQD 379
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED--------------RRERLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 380 AQLEkqlsinmlgEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTvqnqelklhAEAEQEGHAQNLEEQLGDLREDNQRL 459
Cdd:TIGR02168 443 EELE---------EELEELQEELERLEEALEELREELEEAEQALD---------AAERELAQLQARLDSLERLQENLEGF 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 460 RQELKTSIAQakfRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSFpqqkleRAWNALKD----RWHR 535
Cdd:TIGR02168 505 SEGVKALLKN---QSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAK------KAIAFLKQnelgRVTF 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 536 LDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLL----------NELDKYKRNKLETI--------- 596
Cdd:TIGR02168 576 LPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldNALELAKKLRPGYRivtldgdlv 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 597 ---------EEHHEETIVQLEAQLEEARQKLE-LASLSSQQQMEThlisspektpvdSELLAKMEQKEQEYLQLQEQLAF 666
Cdd:TIGR02168 656 rpggvitggSAKTNSSILERRREIEELEEKIEeLEEKIAELEKAL------------AELRKELEELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 667 AKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKL 746
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 747 QLANLQNQLQADQEKLRELLQLQDKLEQQKELMEvdqnQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVN 826
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATE----RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 827 EERTRLQEQLltKEQESGLDsELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLrvneEQLLAKEEQLHAKESQLQSLE 906
Cdd:TIGR02168 880 NERASLEEAL--ALLRSELE-ELSEELRELESKRSELRRELEELREKLAQLELRL----EGLEVRIDNLQERLSEEYSLT 952
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571201 907 SQLQGQLAA---DESQQLQQTIDGLGQEKNELIKVLQQKHQEntqYYAEIQRLQPFEQQVKELVKEREKLQD 975
Cdd:TIGR02168 953 LEEAEALENkieDDEEEARRRLKRLENKIKELGPVNLAAIEE---YEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
662-981 |
7.13e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 7.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 662 EQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRetLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQ 741
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 742 ---DQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELmevdQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEI 818
Cdd:TIGR02168 267 eklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI----LRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 819 QQQLQEVNEERTRLQEQLltkeqesgldSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAK 898
Cdd:TIGR02168 343 EEKLEELKEELESLEAEL----------EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 899 ESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVG 978
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
...
gi 28571201 979 FLK 981
Cdd:TIGR02168 493 SLE 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
353-937 |
1.17e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 1.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 353 KEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKL 432
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 433 HAEAEQEghaqnLEEQLGDLREDNQRLRQELKTsiAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDR 512
Cdd:COG1196 335 LEEELEE-----LEEELEEAEEELEEAEAELAE--AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 513 LDSSFpQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNK 592
Cdd:COG1196 408 AEEAL-LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 593 LETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELD 672
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 673 KRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLqrRDEDLKELEEQLSAVRQDLDEKSIQmkisqdqhKLQLANLQ 752
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL--VASDLREADARYYVLGDTLLGRTLV--------AARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 753 NQLQADQEKLRELLQLQDKLEQQKELmevdqnqqitiikkELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRL 832
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSL--------------TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 833 QEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLhakESQLQSLESQLQG- 911
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL---ERELERLEREIEAl 779
|
570 580 590
....*....|....*....|....*....|
gi 28571201 912 ----QLAADESQQLQQTIDGLGQEKNELIK 937
Cdd:COG1196 780 gpvnLLAIEEYEELEERYDFLSEQREDLEE 809
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
151-720 |
9.44e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 9.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 151 DIALGNDDVVRLNNRIAELEQLNEQLNVSLEELDSQHELAMRDVLEHKTQLAGQVASLKQLQADRLVEHELSNARQQkQL 230
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE-RL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 231 DELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAK-EKKTSESSS 309
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELlEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 310 NSSSTGKHSEDEFIVVRQADATGsgsasgsdrdpdadvtsppSKEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSIN 389
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEE-------------------ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 390 MLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKTSIAQ 469
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 470 AKFRqAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSFPQQKLERAWNALKDRwhRLDLVEQRLVDVQNQ 549
Cdd:COG1196 540 LEAA-LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV--DLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 550 QLVSEHEKKTLEADIsqyILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQM 629
Cdd:COG1196 617 VLGDTLLGRTLVAAR---LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 630 ETHLisspEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETL 709
Cdd:COG1196 694 ELEE----ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
570
....*....|.
gi 28571201 710 QRRDEDLKELE 720
Cdd:COG1196 770 ERLEREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
355-973 |
1.52e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 1.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 355 KLRDRLVSLESQISELTLANTQLQDAQLEKQlsINMLGEQLVELEKRLRLSEAEKEQLQVNLQ-LRLQQLTVQNQELKLH 433
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAE--LEELEAELEELEAELAELEAELEELRLELEeLELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 434 AEAEQEGHAQNLEEQLgdlREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDDAdseygtfELDKLRALLQAEIEDRL 513
Cdd:COG1196 295 AELARLEQDIARLEER---RRELEERLEELEEELAELEEELEELEEELEELEEELE-------EAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 514 DSsfpQQKLERAWNALKDRWHRLdlvEQRLVDVQNQQLVSEHEKKTLEADISQyilqcdelmknndlLLNELDKYKRNKL 593
Cdd:COG1196 365 EA---LLEAEAELAEAEEELEEL---AEELLEALRAAAELAAQLEELEEAEEA--------------LLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 594 ETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQmethlisspektpvdsELLAKMEQKEQEYLQLQEQLAFAKTELDK 673
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE----------------ALLELLAELLEEAALLEAALAELLEELAE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 674 RnKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQN 753
Cdd:COG1196 489 A-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 754 QLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQ 833
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 834 EQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQL 913
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 914 AADESQQLQQTIDGLGQEKNELIKVLQqkhqentqYYAEIQRLQPFEQQVKELVKEREKL 973
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALE--------ELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
700-977 |
5.11e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 5.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 700 EELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLqLANLQNQLQADQEKLRELL-QLQDKLEQQKEL 778
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE-IEKEIEQLEQEEEKLKERLeELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 779 MEvDQNQQITIIKKELAETTNQLSECQERLTVKEAQLA-----EIQQQLQEVNEERTRLQEQL-----------LTKEQE 842
Cdd:TIGR02169 753 IE-NVKSELKELEARIEELEEDLHKLEEALNDLEARLShsripEIQAELSKLEEEVSRIEARLreieqklnrltLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 843 SGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQgqlaadESQQLQ 922
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR------ELERKI 905
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 28571201 923 QTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQV 977
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAEL 960
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
180-834 |
1.24e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 180 LEELDSQHELAMRDVLEHKTQLAGQVASLKQLQADRlvehelsnARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELI 259
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAEL--------EELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 260 EMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAKEKKTSESssnssstgKHSEDEFIVVRQAdatgsgsasgs 339
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL--------EEAEAELAEAEEA----------- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 340 drdpdadvtsppsKEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLR 419
Cdd:COG1196 367 -------------LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 420 LQQLtvqnQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDDADSEYGTFELD 499
Cdd:COG1196 434 EEEE----EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 500 KLRALLQAEiedrldssfpQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISqyiLQCDELMKNND 579
Cdd:COG1196 510 VKAALLLAG----------LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY---LKAAKAGRATF 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 580 LLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQqqmethlisspektpVDSELLAKMEQKEQEYLQ 659
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL---------------GRTLVAARLEAALRRAVT 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 660 LQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKI 739
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 740 SQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAE--TTNQLS-----ECQERLTvke 812
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgPVNLLAieeyeELEERYD--- 798
|
650 660
....*....|....*....|..
gi 28571201 813 aqlaEIQQQLQEVNEERTRLQE 834
Cdd:COG1196 799 ----FLSEQREDLEEARETLEE 816
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
589-1097 |
3.08e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 3.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 589 KRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAK 668
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 669 TELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQL 748
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 749 ANLQNQLQADQEKLRELLQLQDKLEQQKELmEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEE 828
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEE-EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 829 RTRLQEQLLTKEQ-----ESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETL-------RVNEEQLLAKEEQLH 896
Cdd:COG1196 486 LAEAAARLLLLLEaeadyEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalqnIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 897 AKESQL-----QSLESQLQGQLAADESQQLQQ-----TIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKEL 966
Cdd:COG1196 566 LKAAKAgratfLPLDKIRARAALAAALARGAIgaavdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 967 VKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQRDLEE 1046
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 28571201 1047 SRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKL 1097
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
561-1207 |
4.87e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 4.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 561 EADISQYILQCDELMKNNDLLLNELDKYKRnkletIEEHHEETIVQLEAQLEEARqkLELASLSSQQQMETHLISspekt 640
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEE-----ELEELTAELQELEEKLEELR--LEVSELEEEIEELQKELY----- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 641 pvdsELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELE 720
Cdd:TIGR02168 292 ----ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 721 EQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKE-LMEVDQNQQITIIKKELAETTN 799
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEeLLKKLEEAELKELQAELEELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 800 QLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQE 879
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 880 TLRVNEEQLLAKEEQLHA---------KESQLQSLESQLQ---------------GQLAADESQQLQQTIDGLGQEKNEL 935
Cdd:TIGR02168 528 LISVDEGYEAAIEAALGGrlqavvvenLNAAKKAIAFLKQnelgrvtflpldsikGTEIQGNDREILKNIEGFLGVAKDL 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 936 IKV------------------------LQQKHQENTQY-------------YAEIQRLQPFEQQVKELVKEREKLQDQVG 978
Cdd:TIGR02168 608 VKFdpklrkalsyllggvlvvddldnaLELAKKLRPGYrivtldgdlvrpgGVITGGSAKTNSSILERRREIEELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 979 FLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIE---ELHTQETVELQRDLEESRSRQAILE 1055
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEaevEQLEERIAQLSKELTELEAEIEELE 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1056 QQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDrelkQQAALTNLQCALEQFQNDKDHDIEMATQR 1135
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL----LNEEAANLRERLESLERRIAATERRLEDL 843
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571201 1136 IRREMQAQLDRQgQLQLEMSGLQQQLAEANQGLraaARLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLS 1207
Cdd:TIGR02168 844 EEQIEELSEDIE-SLAAEIEELEELIEELESEL---EALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-1136 |
9.59e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 9.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 358 DRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAE 437
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 438 QegHAQNLEEQLGDLREDNQRLRQELKTSIAQAKfrQAIAEEKQEITDLDDadseygtfELDKLRALLQAeiedrldssf 517
Cdd:TIGR02168 312 A--NLERQLEELEAQLEELESKLDELAEELAELE--EKLEELKEELESLEA--------ELEELEAELEE---------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 518 pqqkLERAWNALKDRWHRLdlvEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIE 597
Cdd:TIGR02168 370 ----LESRLEELEEQLETL---RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 598 EHHEETIVQLEAQLEEARQKLELASLSSQQqMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKL 677
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEE-AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 678 LERNGEQLTKQQQQNQADQKKLEELSQ--LRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQL 755
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIEAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFL 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 756 QA------DQEKLRELLQ-----------LQDKLEQQKELmevDQNQQITIIKKELA------------------ETTNQ 800
Cdd:TIGR02168 602 GVakdlvkFDPKLRKALSyllggvlvvddLDNALELAKKL---RPGYRIVTLDGDLVrpggvitggsaktnssilERRRE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 801 LSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLltkeqesgldSELAKRNQELEDQLLAKEQQLQLNQAELEKLQET 880
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEEL----------EQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 881 LRVNEEQLLAKEEQLHAKESQLQSLESQLQGqlAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQpfe 960
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAE--AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR--- 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 961 QQVKELVKEREKLQDQVGFLKEKSDilttnllteqtnqrllqqqqaESQEQQASTLRDLERLRAHLLEIE---ELHTQET 1037
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIE---------------------ELSEDIESLAAEIEELEELIEELEselEALLNER 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1038 VELQRDLEESRSRQAILEQQVSKSSTAYTSA---SIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNL 1114
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELrreLEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENK 962
|
810 820
....*....|....*....|..
gi 28571201 1115 QCALEQFQNDKDHDIEMATQRI 1136
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
48-938 |
1.12e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 48 EQQAKTALELLAETQEQKEQLDKRCEEKDREIAALRRELAKSKQKQESQLaasTSATREPQLQNEEPNVEDSWcwepdgg 127
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEK---LELEEEYLLYLDYLKLNEER------- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 128 dEKGATGAGSGDSASRDKESGLVDIALGNDDVVRLNNRIAELEQLNEQLNVSLEELDSQHELAMRDVLEHKTQLAGqvas 207
Cdd:pfam02463 239 -IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE---- 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 208 lkqlqaDRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERE 287
Cdd:pfam02463 314 ------EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLS 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 288 RLLKDLEE--TRQAKEKKTSESSSNSSSTGKHSEDEFIVVRQADATGSGSASGSDRDPDADVTSPPSKEKLRDRLVSLES 365
Cdd:pfam02463 388 SAAKLKEEelELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 366 QISELTLANTQLQDAQLEKQLSIN-MLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQN 444
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSrQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIST 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 445 LEEQLGDLREDNQRLRQELKTSIAQA-KFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSFPQQKLE 523
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELpLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 524 RAWNALKDRWHRLDLVEQRLVDVQNQQ---LVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHH 600
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLeegLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 601 EETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLER 680
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 681 NGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQE 760
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 761 KLRELLQLQDKLEQQKELMEvdqnqqitiIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKE 840
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDE---------LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE 938
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 841 QESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQ 920
Cdd:pfam02463 939 ELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
890
....*....|....*...
gi 28571201 921 LQQTIDGLGQEKNELIKV 938
Cdd:pfam02463 1019 LKEFLELFVSINKGWNKV 1036
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
4-515 |
9.89e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 9.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 4 LNSSLSQLKGQLTNLAQEVLAEtagpgDLEYEGHQAG----GASVQDAEQQAKTALELLAETQEQKEQLDKRCEEKDREI 79
Cdd:COG1196 258 LEAELAELEAELEELRLELEEL-----ELELEEAQAEeyelLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 80 AALRRELA--------KSKQKQESQLAASTSATREPQLQNEEPNVEDSWcwepdggDEKGATGAGSGDSASRDKESGLVD 151
Cdd:COG1196 333 EELEEELEeleeeleeAEEELEEAEAELAEAEEALLEAEAELAEAEEEL-------EELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 152 IALGNDDVVRLNNRIAELEQLNEQLNVSLEELDSQHELAMRDVLEHKTQLAGQVASLKQLQADRLVEHELSNARQQKQLD 231
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 232 ELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAKEKKTSESSSNS 311
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 312 SSTGKHSEDEFIvvrQADATGSGSASGSDRDPDADVTSPPSKEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSINML 391
Cdd:COG1196 566 LKAAKAGRATFL---PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 392 GEQLVELEK-----RLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKTS 466
Cdd:COG1196 643 AGRLREVTLegeggSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 28571201 467 IAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDS 515
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
740-965 |
1.31e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 1.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 740 SQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKElmevDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQ 819
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 820 QQLQevnEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKE 899
Cdd:COG4942 97 AELE---AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28571201 900 SQLQSLESQLQGQLAADESQ--QLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKE 965
Cdd:COG4942 174 AELEALLAELEEERAALEALkaERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
764-1050 |
1.49e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 764 ELLQLQDKLEQQKELMEVDQnQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQE- 842
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQ-SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEi 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 843 SGLDSELAKRNQELEDQLLAKEQ-QLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQ-----GQLAAD 916
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNrltleKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 917 ESQQLQQTIDGLGQEKNEL---IKVLQQKHQENTQYYAEIQ-RLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLL 992
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIekeIENLNGKKEELEEELEELEaALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 28571201 993 TEQTNQRLLQQQQAESQEQqastLRDLERLRAHLLEI-EELHTQETVELQRDLEESRSR 1050
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEE----LSEIEDPKGEDEEIpEEELSLEDVQAELQRVEEEIR 968
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-967 |
8.58e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 8.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 138 GDSASRDKESGLVDIALGNDDVVRLNNRiAELEQLnEQLNVSLEELDSQhelAMRDVLEHKT--QLAGQVASLKQLQADR 215
Cdd:PTZ00121 1036 GNNDDVLKEKDIIDEDIDGNHEGKAEAK-AHVGQD-EGLKPSYKDFDFD---AKEDNRADEAteEAFGKAEEAKKTETGK 1110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 216 lVEHELSNARQQKQLDELRQTSSAakKQQEELQRRVEQQEAEliEMQDLLDKRRQDTAELIERVRVAETERE-RLLKDLE 294
Cdd:PTZ00121 1111 -AEEARKAEEAKKKAEDARKAEEA--RKAEDARKAEEARKAE--DAKRVEIARKAEDARKAEEARKAEDAKKaEAARKAE 1185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 295 ETRQAKEKKTSESSSNSSSTGKHSEDEFI-VVRQADATGSGSASGSDRDPDADVTSPPSKEKLRDRLVSLESQISELTLA 373
Cdd:PTZ00121 1186 EVRKAEELRKAEDARKAEAARKAEEERKAeEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 374 NTQLQDAQLEKQLSinmlGEQLVELEKRLRLSEAEKEQlqvnLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLR 453
Cdd:PTZ00121 1266 ARRQAAIKAEEARK----ADELKKAEEKKKADEAKKAE----EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 454 EDNQRLRQELKTSIAQAKFRQA-IAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSFPQQKLERawnaLKDR 532
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE----LKKA 1413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 533 WHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLE 612
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 613 EARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEqlafaktELDKRNKLleRNGEQLTKQQQQN 692
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE-------EKKKADEL--KKAEELKKAEEKK 1564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 693 QADQKKLEElsQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKL 772
Cdd:PTZ00121 1565 KAEEAKKAE--EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 773 EQQKELME-VDQNQQITIIKK-ELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLqEQLLTKEQESGLDSELA 850
Cdd:PTZ00121 1643 AEEKKKAEeLKKAEEENKIKAaEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA-EELKKKEAEEKKKAEEL 1721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 851 KRNQELEDqllAKEQQLQLNQAELEKLQETLRVNEE-----QLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQqtI 925
Cdd:PTZ00121 1722 KKAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEekkkiAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME--V 1796
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 28571201 926 DGLGQEKNELIKVLQQKHQENTQYYAEIQRLqpFEQQVKELV 967
Cdd:PTZ00121 1797 DKKIKDIFDNFANIIEGGKEGNLVINDSKEM--EDSAIKEVA 1836
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
198-921 |
9.18e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 9.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 198 KTQLAGQVASLKQLQADRLVEhELSNARQQKQLDELRQTSSAAKKQQEelQRRVEQqEAELIEMQDLLDKRRQDTAELIE 277
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAE-EARKAEDAKKAEAVKKAEEAKKDAEE--AKKAEE-ERNNEEIRKFEEARMAHFARRQA 1270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 278 RVRVAETERERLLKDLEETRQAKEKKTSESSSNSSSTGKHSEDEfivvRQADATGSGSASGSDRDPDADVTSPPSKEKLR 357
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA----KKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 358 DRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKeqlqvnlqlRLQQLTVQNQELKLHAEAE 437
Cdd:PTZ00121 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK---------KAEEDKKKADELKKAAAAK 1417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 438 QEghAQNLEEQLGDLRE-DNQRLRQELKTSIAQAKFRqaiAEEKQEITDLDDADSEYGTFELDKLRALLQAEIED-RLDS 515
Cdd:PTZ00121 1418 KK--ADEAKKKAEEKKKaDEAKKKAEEAKKADEAKKK---AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEaKKKA 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 516 SFPQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLL-LNELDKYKRNKLE 594
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKkAEEKKKAEEAKKA 1572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 595 TIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKR 674
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 675 NKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQlsavrqdlDEKSIQMKISQDQHKLQLANLQNQ 754
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--------AKKAEELKKKEAEEKKKAEELKKA 1724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 755 LQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQE 834
Cdd:PTZ00121 1725 EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 835 QLLTKEQESGLDSEL----AKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLqsLESQLQ 910
Cdd:PTZ00121 1805 DNFANIIEGGKEGNLvindSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDL--KEDDEE 1882
|
730
....*....|.
gi 28571201 911 GQLAADESQQL 921
Cdd:PTZ00121 1883 EIEEADEIEKI 1893
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
746-977 |
1.20e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 746 LQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEvDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEV 825
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELA-ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 826 NEERTRLQEQLLTKEQesgldsELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSL 905
Cdd:COG4942 89 EKEIAELRAELEAQKE------ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571201 906 ESQLqgQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQpfeQQVKELVKEREKLQDQV 977
Cdd:COG4942 163 AALR--AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA---AELAELQQEAEELEALI 229
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-828 |
1.48e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 4 LNSSLSQLKGQLTNLAQEVLAETAG--PGDLEYEGHQAGGASVQDAEQQAKTALELLAETQE----QKEQLDKRCEEKDR 77
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAElqELEEKLEELRLEVSELEEEIEELQKELYALANEISrleqQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 78 EIAALRRELAKSKQKQESQLAAStsATREPQLQNEEPNVEDswcwEPDGGDEKGAtgagsgdsASRDKESGLVDIalgND 157
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEEL--AELEEKLEELKEELES----LEAELEELEA--------ELEELESRLEEL---EE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 158 DVVRLNNRIAELEQLNEQLNVSLEELDSQhelamrdvlehKTQLAGQVASLKQLQADRLVE-HELSNARQQKQLDELRQT 236
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEAR-----------LERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 237 SSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQA-KEKKTSESSSNSSSTG 315
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALlKNQSGLSGILGVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 316 KHSEDEFIVVRQADATGSGSASGSDRDPDADVTSPPSKEKLRDRLVSLEsqisELTLANTQLQDAQLEKQLSINMLGEQL 395
Cdd:TIGR02168 529 ISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLP----LDSIKGTEIQGNDREILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 396 VELEKrlrlseaEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDL--------REDNQRLRQELKTSI 467
Cdd:TIGR02168 605 KDLVK-------FDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLvrpggvitGGSAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 468 AQAKFRQAIAEEKQEITDLDDadseygtfELDKLRALLQAEIEDRLDSSFPQQKLERAWNALKDRWHRLDLVEQRLVDVQ 547
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEK--------ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 548 NQQlvsEHEKKTLEADISQYIlqcDELMKNNDLLLNELDKykRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQ 627
Cdd:TIGR02168 750 AQL---SKELTELEAEIEELE---ERLEEAEEELAEAEAE--IEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 628 QMEThlISSPEKTPVDSELLAKMEQKEQEylQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQkklEELSQLRE 707
Cdd:TIGR02168 822 LRER--LESLERRIAATERRLEDLEEQIE--ELSEDIESLAAEIEELEELIEELESELEALLNERASLE---EALALLRS 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 708 TLQRRDEDLKELEEQLSAVRQDLDEKSIQMKisqdQHKLQLANLQNQLQADQEKLREL----LQLQDKLEQQKELMEVDQ 783
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLA----QLELRLEGLEVRIDNLQERLSEEysltLEEAEALENKIEDDEEEA 970
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 28571201 784 NQQITIIKKELAETTN-------QLSECQERLTVKEAQLAEIQQ---QLQEVNEE 828
Cdd:TIGR02168 971 RRRLKRLENKIKELGPvnlaaieEYEELKERYDFLTAQKEDLTEakeTLEEAIEE 1025
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
606-976 |
1.79e-08 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 59.15 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 606 QLEAQLEEA--RQKLELASLSSQQQMETHLisspektpvdsELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGE 683
Cdd:PRK11281 40 DVQAQLDALnkQKLLEAEDKLVQQDLEQTL-----------ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 684 QLTKQQQQNQADQ--KKLEE-LSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQdQHKLQLANLQNQLQADQE 760
Cdd:PRK11281 109 DNDEETRETLSTLslRQLESrLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANS-QRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 761 KLREllQLQDKLEQQKELMevdqNQQITIIKKELAETTNQLSECQER---LTVKEAQLAEIQQQLQEV-NEERTRLQEQL 836
Cdd:PRK11281 188 ALRP--SQRVLLQAEQALL----NAQNDLQRKSLEGNTQLQDLLQKQrdyLTARIQRLEHQLQLLQEAiNSKRLTLSEKT 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 837 LTKEQESgldselAKRNQELEDQLLAKEQQ--LQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQlQSLESQ---LQG 911
Cdd:PRK11281 262 VQEAQSQ------DEAARIQANPLVAQELEinLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSE-RNIKEQisvLKG 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 912 QLAADE--SQQLQ-----QTIDGLGQE----KNELIKVLQQKHQ--ENTQYYAEIQRLQPFE------QQVKELVKEREK 972
Cdd:PRK11281 335 SLLLSRilYQQQQalpsaDLIEGLADRiadlRLEQFEINQQRDAlfQPDAYIDKLEAGHKSEvtdevrDALLQLLDERRE 414
|
....
gi 28571201 973 LQDQ 976
Cdd:PRK11281 415 LLDQ 418
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
790-955 |
2.04e-08 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 58.64 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 790 IKKELAETTNQLSECQERLTVKEAQL---AEIQQQLQEVNEERTRLQEQLltkeqesglDSELAKRNQEL---EDQLLAK 863
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAKRILEEAKKeaeAIKKEALLEAKEEIHKLRNEF---------EKELRERRNELqklEKRLLQK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 864 EQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQL------AADE--SQQLQQTIDGLGQEKNEL 935
Cdd:PRK12704 95 EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELerisglTAEEakEILLEKVEEEARHEAAVL 174
|
170 180
....*....|....*....|....*.
gi 28571201 936 IKVLQQKHQENTQYYAE------IQR 955
Cdd:PRK12704 175 IKEIEEEAKEEADKKAKeilaqaIQR 200
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
699-1078 |
2.21e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 59.20 E-value: 2.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 699 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLD-----EKSIQMKISQDQHKLQLAN----LQNQLQADQEklrELLQLQ 769
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAelneaESDLEQDYQAASDHLNLVQtalrQQEKIERYQA---DLEELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 770 DKLEQQKELMEVDQNQQITI-IKKELAE-----TTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQES 843
Cdd:PRK04863 362 ERLEEQNEVVEEADEQQEENeARAEAAEeevdeLKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 844 GLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRV----------NEEQLLAKEEQLHAKESQLQSL-ESQLQGQ 912
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLvrkiagevsrSEAWDVARELLRRLREQRHLAEqLQQLRMR 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 913 LAADESQQLQQtidglgQEKNELIKVLQQKHQENTQYYAEIQRLQP--------FEQQVKELVKEREKLQDQVGFLKEKS 984
Cdd:PRK04863 522 LSELEQRLRQQ------QRAERLLAEFCKRLGKNLDDEDELEQLQEelearlesLSESVSEARERRMALRQQLEQLQARI 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 985 DILTTNLLTEQTNQRLLqQQQAESQEQQASTLRDLERLRAHLLEIEelhtqetVELQRDLEESRSRQAILEQQVSKSSTA 1064
Cdd:PRK04863 596 QRLAARAPAWLAAQDAL-ARLREQSGEEFEDSQDVTEYMQQLLERE-------RELTVERDELAARKQALDEEIERLSQP 667
|
410
....*....|....
gi 28571201 1065 YTSASIRANQQAET 1078
Cdd:PRK04863 668 GGSEDPRLNALAER 681
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
521-1048 |
4.02e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 4.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 521 KLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHH 600
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 601 EETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQE---QLAFAKTELDKRNKL 677
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfyeEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 678 LERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKsiqmkisqDQHKLQLANLQnqlqa 757
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL--------ERLKKRLTGLT----- 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 758 dQEKLRELLQL--QDKLEQQKELMEV-DQNQQITIIKKELAETTNQLSE-------CQERLTVKE---------AQLAEI 818
Cdd:PRK03918 386 -PEKLEKELEEleKAKEEIEEEISKItARIGELKKEIKELKKAIEELKKakgkcpvCGRELTEEHrkelleeytAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 819 QQQLQEVNEERTRLQEQLLTKEQESGLDSELAKrNQELEDQLLAKEQQLQ-LNQAELEKLQETLRVNEEQLLAKEEQLHA 897
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESELIK-LKELAEQLKELEEKLKkYNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 898 KESQLQSLEsQLQGQLAADES------QQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKERE 971
Cdd:PRK03918 544 LKKELEKLE-ELKKKLAELEKkldeleEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELK 622
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28571201 972 KLQDQvgfLKEKSDILttnlltEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQRdLEESR 1048
Cdd:PRK03918 623 KLEEE---LDKAFEEL------AETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEE-LEKRR 689
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
59-559 |
5.25e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 5.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 59 AETQEQKEQLDKRCEEKDREIAALRRELAKSKQKQESQLAASTSATREPQLQNEEPNVEdswcwEPDGGDEKGATGAGSG 138
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA-----EKKKEEAKKKADAAKK 1385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 139 DSASRDKESGLVDIALGNDDVVRLNNRIAELEQLNEQLNVSLEELDSQHELAMR-------DVLEHKTQLAGQVASL-KQ 210
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKaeeakkaDEAKKKAEEAKKAEEAkKK 1465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 211 LQADRLVEHELSNARQQKQLDELRQTSSAAKKQQEELqRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERE-RL 289
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA-KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKaEE 1544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 290 LKDLEETRQAKEKKTSESSSNSSSTGKHSEDEFIVVRQAD-ATGSGSASGSDRDPDADVTSPPSKEKLRdrlvslesQIS 368
Cdd:PTZ00121 1545 KKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKLYEEEKKMKAEEAK--------KAE 1616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 369 ELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQlqvnlQLRLQQLTVQNQELKLHA-EAEQEGHAQNLEE 447
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN-----KIKAAEEAKKAEEDKKKAeEAKKAEEDEKKAA 1691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 448 QLGDLREDNQRLRQELKTSIAQAKfRQAIAEEKQEITDLDDADSEYGTFELDKLRAlLQAEIEDRLDSSFPQQKLERAWN 527
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEK-KKAEELKKAEEENKIKAEEAKKEAEEDKKKA-EEAKKDEEEKKKIAHLKKEEEKK 1769
|
490 500 510
....*....|....*....|....*....|..
gi 28571201 528 ALKDRWHRLDLVEQRlVDVQNQQLVSEHEKKT 559
Cdd:PTZ00121 1770 AEEIRKEKEAVIEEE-LDEEDEKRRMEVDKKI 1800
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
700-1057 |
1.03e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 56.84 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 700 EELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQM--KISQDQHKLQLANLQNQLQADQEKLRE----LLQLQDKLE 773
Cdd:PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETlsTLSLRQLESRLAQTLDQLQNAQNDLAEynsqLVSLQTQPE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 774 Q-QKELME-VDQNQQITIIKKELAETTNQLSEcqERLTVKEAQLA------EIQQQLQEVNeerTRLQEqLLTKEQEsgl 845
Cdd:PRK11281 160 RaQAALYAnSQRLQQIRNLLKGGKVGGKALRP--SQRVLLQAEQAllnaqnDLQRKSLEGN---TQLQD-LLQKQRD--- 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 846 dsELAKRNQELEDQLLA-----KEQQLQLNQ---AELEKLQETLRVNEEQLLAKEEQLHAKESQ--LQSLES-------- 907
Cdd:PRK11281 231 --YLTARIQRLEHQLQLlqeaiNSKRLTLSEktvQEAQSQDEAARIQANPLVAQELEINLQLSQrlLKATEKlntltqqn 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 908 -QLQGQLaaDESQQLQQTIDglgqeknELIKVLQ---------QKHQENTQYYAEIQ---------RLQPFEqqvkeLVK 968
Cdd:PRK11281 309 lRVKNWL--DRLTQSERNIK-------EQISVLKgslllsrilYQQQQALPSADLIEgladriadlRLEQFE-----INQ 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 969 EREKLQDQVGFLkeksdilttnllteqtnQRLLQQQQAESQEQQASTLRDLERLRAHLLE--IEELHTQ--ETVELQRD- 1043
Cdd:PRK11281 375 QRDALFQPDAYI-----------------DKLEAGHKSEVTDEVRDALLQLLDERRELLDqlNKQLNNQlnLAINLQLNq 437
|
410
....*....|....*..
gi 28571201 1044 ---LEESRSRQAILEQQ 1057
Cdd:PRK11281 438 qqlLSVSDSLQSTLTQQ 454
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
700-908 |
1.10e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 700 EELSQLRETLQRRDEDLKELEEQLSAVRQ--DLDEKSIQMKISQDQHKLQLANLQnqLQADQEKLRELLQLQDKLEQQKE 777
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEPirELAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 778 lmevDQNQQITIIKKELAETTNQLSECQE--------RLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSEL 849
Cdd:COG4913 306 ----RLEAELERLEARLDALREELDELEAqirgnggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE 381
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 28571201 850 AKRNQELEDQLLAKEQQlqlnqaELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQ 908
Cdd:COG4913 382 FAALRAEAAALLEALEE------ELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
659-898 |
1.19e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 659 QLQEQLAFAKTELDKRNKLLERNGEQltkqqqqnqaDQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKsiqmk 738
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKE----------EKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 739 isqdqhKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEI 818
Cdd:COG4942 89 ------EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 819 QQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAK 898
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
246-972 |
1.26e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.52 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 246 ELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRV--------------------------------AETERERLLKDL 293
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKlkeqakkaleyyqlkekleleeeyllyldylkLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 294 EETRQAKEKKTSESSSNSSSTGKHSEDEFIVVRQADATGSGSASGSDRDPDADVtspPSKEKLRDRLVSLESQISELTLA 373
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK---SELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 374 NTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAE---AEQEGHAQNLEEQLG 450
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESErlsSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 451 DLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSfpqqKLERAWNALK 530
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK----KSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 531 DRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQ 610
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 611 LEEARQKLELAsLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNgEQLTKQQQ 690
Cdd:pfam02463 559 EVEERQKLVRA-LTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI-LKDTELTK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 691 QNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKlqLANLQNQLQADQEKLRELLQLQD 770
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAK--EEILRRQLEIKKKEQREKEELKK 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 771 KLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQES-GLDSEL 849
Cdd:pfam02463 715 LKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKvEEEKEE 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 850 AKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLG 929
Cdd:pfam02463 795 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLL 874
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 28571201 930 QEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREK 972
Cdd:pfam02463 875 KEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKEN 917
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
660-1125 |
1.89e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.54 E-value: 1.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 660 LQEQLAFAKTELDKRN-KLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMK 738
Cdd:COG4717 47 LLERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 739 ISQD-----QHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEA 813
Cdd:COG4717 127 LLPLyqeleALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 814 QLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLA-----------KEQQLQLNQAELEKLQETLR 882
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 883 VNEEQLLAKEEQLHAK---ESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQpf 959
Cdd:COG4717 287 ALLFLLLAREKASLGKeaeELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-- 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 960 eqqVKELVKEREKLQDQVGFLKEksdilttnlltEQTNQRLLQQQQAESQEQQASTLRdlERLRAHLLEIEE-LHTQETV 1038
Cdd:COG4717 365 ---LEELEQEIAALLAEAGVEDE-----------EELRAALEQAEEYQELKEELEELE--EQLEELLGELEElLEALDEE 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1039 ELQRDLEESRSRQAILEQQVSKSSTAYtsASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCAL 1118
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREEL--AELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAR 506
|
....*..
gi 28571201 1119 EQFQNDK 1125
Cdd:COG4717 507 EEYREER 513
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
699-1078 |
2.22e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.73 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 699 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKL---QLANLQNQLQAdQEKLR----ELLQLQDK 771
Cdd:COG3096 284 SERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAasdHLNLVQTALRQ-QEKIEryqeDLEELTER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 772 LEQQKELMEVDQNQQI------TIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGL 845
Cdd:COG3096 363 LEEQEEVVEEAAEQLAeaearlEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 846 DSELAKRNQELEDQLLAKEQQLQLNQA---------EL--------------EKLQETLRVNEEQ--LLAKEEQLHAKES 900
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAarrqfekayELvckiageversqawQTARELLRRYRSQqaLAQRLQQLRAQLA 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 901 QLQSLESQLQG--QLAADESQQLQQTIDGLgQEKNELIKVLQQKHQENTQYYAE-IQRLQPFEQQVKELVKEREKLQDQV 977
Cdd:COG3096 523 ELEQRLRQQQNaeRLLEEFCQRIGQQLDAA-EELEELLAELEAQLEELEEQAAEaVEQRSELRQQLEQLRARIKELAARA 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 978 GFLKEKSDILTTnlLTEQTNQRLlqqqqaesqeqqaSTLRDLERLRAHLLEIEelhtqetVELQRDLEESRSRQAILEQQ 1057
Cdd:COG3096 602 PAWLAAQDALER--LREQSGEAL-------------ADSQEVTAAMQQLLERE-------REATVERDELAARKQALESQ 659
|
410 420
....*....|....*....|.
gi 28571201 1058 VSKSSTAYTSASIRANQQAET 1078
Cdd:COG3096 660 IERLSQPGGAEDPRLLALAER 680
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
805-977 |
6.63e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 6.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 805 QERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRN------QELEDQLLAKEQQLQ---LNQAELE 875
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELErldASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 876 KLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGqlAADESQQLQQTIDGLGQEKN-ELIKVLQQKHQENTQYYAEIQ 954
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ--AEEELDELQDRLEAAEDLARlELRALLEERFAAALGDAVERE 766
|
170 180
....*....|....*....|...
gi 28571201 955 RLQPFEQQVKELVKEREKLQDQV 977
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEEL 789
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
645-867 |
6.91e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 6.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 645 ELLAKMEQKEQEYLQLQEQLAFAKTELDKRNklLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLS 724
Cdd:COG4913 252 ELLEPIRELAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 725 AVRQDLDEKSIqmkisqDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSEC 804
Cdd:COG4913 330 AQIRGNGGDRL------EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28571201 805 QERLTVKEAQLAEIQQQLQEVNEERTRLqeqlltKEQESGLDSELAKRNQELEDQLLAKEQQL 867
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAEIASL------ERRKSNIPARLLALRDALAEALGLDEAEL 460
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
710-1191 |
7.54e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 7.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 710 QRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKlQLANLQNQLQADQEKLRELLQLQDKLEQQKELME-VDQNQQIT 788
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREELEKLEkLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 789 IIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLltkeqesgldselakrNQELEDQLLAKEQQLQ 868
Cdd:COG4717 132 QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEL----------------EELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 869 LNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEknELIKVLQQKHQENTQ 948
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL--LALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 949 YYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRL--LQQQQAESQEQQASTLRDLERLRAHL 1026
Cdd:COG4717 274 TIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLaaLGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1027 LEIEELHTQETVELQRDleesrSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELK 1106
Cdd:COG4717 354 REAEELEEELQLEELEQ-----EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1107 Q-QAALTNLQCALEQFQNDKDhDIEMATQRIRREMQaQLDRQGQLQLEMSGLQQQLAEANQGLRAAARLSDQLEAGQQTI 1185
Cdd:COG4717 429 ElEEELEELEEELEELEEELE-ELREELAELEAELE-QLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAR 506
|
....*.
gi 28571201 1186 AVLRDE 1191
Cdd:COG4717 507 EEYREE 512
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
792-952 |
9.74e-07 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 52.66 E-value: 9.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 792 KELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLltkEQESGLDSELAKRNQELEDQLLAKEQQLQLNQ 871
Cdd:PRK09039 60 SQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALL---AELAGAGAAAEGRAGELAQELDSEKQVSARAL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 872 AELEKLQetlrvneeqllakeEQLHAKESQLQSLESQLQGQLAADESQQLQqtIDGLGQEKNeliKVLQQKHQENTQYYA 951
Cdd:PRK09039 137 AQVELLN--------------QQIAALRRQLAALEAALDASEKRDRESQAK--IADLGRRLN---VALAQRVQELNRYRS 197
|
.
gi 28571201 952 E 952
Cdd:PRK09039 198 E 198
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
553-1050 |
1.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 553 SEHEKKTLEADISQYILQCDELMKNNDlllnelDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASlSSQQQMETH 632
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK-AEAEAAADE 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 633 LISSPEKTPVDsELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADqkklEELSQLRETLQRR 712
Cdd:PTZ00121 1359 AEAAEEKAEAA-EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA----DEAKKKAEEKKKA 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 713 DEDLKELEEQLSAvrQDLDEKSIQMKISQD-QHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIK 791
Cdd:PTZ00121 1434 DEAKKKAEEAKKA--DEAKKKAEEAKKAEEaKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 792 KELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNE-ERTRLQEQLltKEQESGLDSELAKRNQELEDQLLAKEQQLQln 870
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKaDELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAK-- 1587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 871 QAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLEsqlQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYY 950
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE---ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 951 AEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDilttnllteqtnqrlLQQQQAESQEQQASTLRDLERLRahllEIE 1030
Cdd:PTZ00121 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE---------------EAKKAEELKKKEAEEKKKAEELK----KAE 1725
|
490 500
....*....|....*....|
gi 28571201 1031 ELHTQETVELQRDLEESRSR 1050
Cdd:PTZ00121 1726 EENKIKAEEAKKEAEEDKKK 1745
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
700-936 |
1.15e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 700 EELSQLRETLQRRDEDLKELEEQLSAVRQDLdeKSIQMKISQDQHKLQlaNLQNQLQADQEKLRELLQLQDKLEQQKELM 779
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQL--AALERRIAALARRIR--ALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 780 EVDQNQQITiikkeLAETTNQLSECQERLTVKEA-QLAEIQQQLQEVNEERTRLQEQL-LTKEQESGLDSELAKRNQELE 857
Cdd:COG4942 103 KEELAELLR-----ALYRLGRQPPLALLLSPEDFlDAVRRLQYLKYLAPARREQAEELrADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28571201 858 DQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELI 936
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
768-1214 |
1.35e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 768 LQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQErltvKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQEsglds 847
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEE----KEEEYAELQEELEELEEELEELEAELEELREE----- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 848 elaKRNQELEDQLLAKEQQLQLNQAELEKLQETLrvneEQLLAKEEQLHAKESQLQSLESQLQgQLAADESQQLQQTIDG 927
Cdd:COG4717 118 ---LEKLEKLLQLLPLYQELEALEAELAELPERL----EELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 928 LGQEKNELIKVLQQKHQENTQYYAEIQRLQpfeQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAE 1007
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQ---EELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGG 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1008 SQEQQASTLRDLERLRAHLLEIEELHTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQ 1087
Cdd:COG4717 267 SLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1088 QQRDELLAKLGQYEdRELKQQAALTNLQCALEQFQNDKDHDIematqrirREMQAQLDRQGQLQLEMSGLQQQLAEANQG 1167
Cdd:COG4717 347 EELQELLREAEELE-EELQLEELEQEIAALLAEAGVEDEEEL--------RAALEQAEEYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 28571201 1168 LRAAA------RLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLSSSESSQT 1214
Cdd:COG4717 418 LEELLealdeeELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
581-829 |
1.51e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 581 LLNEL-DKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTpvDSELLAKMEQKEQEYLQ 659
Cdd:COG3206 153 VANALaEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEE--AKLLLQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 660 LQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLE------ELSQLRETLQRRDEDLKELEEQLSAVRQDLdek 733
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaeleaELAELSARYTPNHPDVIALRAQIAALRAQL--- 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 734 siqmkisQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQkelmevdqnqqitiiKKELAETTNQLSECQERLTVKEA 813
Cdd:COG3206 308 -------QQEAQRILASLEAELEALQAREASLQAQLAQLEAR---------------LAELPELEAELRRLEREVEVARE 365
|
250
....*....|....*.
gi 28571201 814 QLAEIQQQLQEVNEER 829
Cdd:COG3206 366 LYESLLQRLEEARLAE 381
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
606-1220 |
1.52e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 606 QLEAQLEEARQKLELASLSSQQQMEtHLISSPEKTPvdSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQL 685
Cdd:pfam15921 246 QLEALKSESQNKIELLLQQHQDRIE-QLISEHEVEI--TGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 686 TKQQQQNQadqkkleelSQLRETLQRRDEDLKELEEQLSAVRQDLDEKsiqmKISQDQHKLQLANLQNQLQ---ADQEKL 762
Cdd:pfam15921 323 ESTVSQLR---------SELREAKRMYEDKIEELEKQLVLANSELTEA----RTERDQFSQESGNLDDQLQkllADLHKR 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 763 RELLQLQDklEQQKELMEVDQNQQITIikkelaettnqlsecqerltvkeaqlAEIQQQLQEVNEERTRLQEQLLTKEQE 842
Cdd:pfam15921 390 EKELSLEK--EQNKRLWDRDTGNSITI--------------------------DHLRRELDDRNMEVQRLEALLKAMKSE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 843 SGLDSELAKRNQELEDQLLAKEQQLQlnqAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADES---- 918
Cdd:pfam15921 442 CQGQMERQMAAIQGKNESLEKVSSLT---AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAtnae 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 919 -QQLQQTIDGLGQEKNELIKvlQQKHQENTQYYAEIQRLQPFEQQ-----VKELVKEREKLQDQVGFLKEKSDILTTNLL 992
Cdd:pfam15921 519 iTKLRSRVDLKLQELQHLKN--EGDHLRNVQTECEALKLQMAEKDkvieiLRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 993 TEQTNQRLLQQQQAESQEQQASTLRDLERlRAHLLEIEELHT----QETVELQRDLEESRSrQAILEQQVSKSSTaytsa 1068
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIRELEA-RVSDLELEKVKLvnagSERLRAVKDIKQERD-QLLNEVKTSRNEL----- 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1069 siraNQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALEQFQNDKDHDIEMATQrIRREMQAQLDRQG 1148
Cdd:pfam15921 670 ----NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG-MQKQITAKRGQID 744
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571201 1149 QLQLEMSGLQQQLAEANQGLRAAARLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLSSSESSQTDKIDKS 1220
Cdd:pfam15921 745 ALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA 816
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
555-840 |
1.76e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 555 HEKKTLEADISQYILQCDELMKnndlllnELDKykrnkLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLi 634
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEE-------ELEK-----LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 635 sspEKTPVDSELL-AKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRR- 712
Cdd:TIGR02169 297 ---GELEAEIASLeRSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEl 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 713 ---DEDLKELEEQLSAVRQDLDeksiQMKISQDQHKLQLANLQNQLQADQEKLREL-LQLQDKLEQQKELMEVdqnqqIT 788
Cdd:TIGR02169 374 eevDKEFAETRDELKDYREKLE----KLKREINELKRELDRLQEELQRLSEELADLnAAIAGIEAKINELEEE-----KE 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 28571201 789 IIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKE 840
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
579-1207 |
2.00e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 579 DLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLElaslSSQQQMETHLISSPEKTPVDSELLAKMEQK-EQEY 657
Cdd:TIGR02169 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE----KLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 658 LQLQEQLAFAKTELDK-------RNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRR----DEDLKELEEQLSAV 726
Cdd:TIGR02169 290 LRVKEKIGELEAEIASlersiaeKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRrdklTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 727 RQDLDEKSIQMKISQDQHKlqlaNLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQqitiIKKELAETTNQLSECQE 806
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELK----DYREKLEKLKREINELKRELDRLQEELQRLSEELAD----LNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 807 RLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESgldSELAKRNQELEDQLLAKEQQLQLNQAEleklQETLRVNEE 886
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY---DRVEKELSKLQRELAEAEAQARASEER----VRGGRAVEE 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 887 QLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTI---DGLGQEKNELIKvlqqKHQENTQYYAEIQRLQPFEQQV 963
Cdd:TIGR02169 515 VLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVvedDAVAKEAIELLK----RRKAGRATFLPLNKMRDERRDL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 964 KELVKE--------------------REKLQDQV---------------------GFLKEKSDILTTNLLTE---QTNQR 999
Cdd:TIGR02169 591 SILSEDgvigfavdlvefdpkyepafKYVFGDTLvvedieaarrlmgkyrmvtleGELFEKSGAMTGGSRAPrggILFSR 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1000 LLQQQQAESQEQQASTLRDLERLRAHLLEIEEL---HTQETVELQRDLEESRSRQAILEQQVSKSstaytsasiraNQQA 1076
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRldeLSQELSDASRKIGEIEKEIEQLEQEEEKL-----------KERL 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1077 ETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALE------------------QFQNDKDHDIEMATQRIRR 1138
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNdlearlshsripeiqaelSKLEEEVSRIEARLREIEQ 819
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28571201 1139 EMQAQLDRQGQLQLEMSGLQQQLAEANqgLRAAARlSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLS 1207
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLK--EQIKSI-EKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
717-1170 |
2.11e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 717 KELEEQLSAVRQDLdEKSIQMKISQDQHKLQLANLQNQLQADQEKLR----ELLQLQDKLeqQKELMEVDQNQQITIIKK 792
Cdd:PRK11281 52 KLLEAEDKLVQQDL-EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRqaqaELEALKDDN--DEETRETLSTLSLRQLES 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 793 ELAETTNQLSECQERLTVKEAQLAEIQQQLQ----EVNEERTRLQE--QLLTKEQESGLDSELAKRNQeLEDQLLAKEQQ 866
Cdd:PRK11281 129 RLAQTLDQLQNAQNDLAEYNSQLVSLQTQPEraqaALYANSQRLQQirNLLKGGKVGGKALRPSQRVL-LQAEQALLNAQ 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 867 LQLNQAELEklqetlrVNeeqllakeeqlhakeSQLQSLEsQLQGQLAADESQQLQQTIDGLgQEknelikVLQQKhqen 946
Cdd:PRK11281 208 NDLQRKSLE-------GN---------------TQLQDLL-QKQRDYLTARIQRLEHQLQLL-QE------AINSK---- 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 947 tqyyaeiqRLQPFEQQVKELVKEREKLQDQVG-FLKEKSDI---LTTNLL--TEQTNQRllqqqqaesQEQQASTLRDLE 1020
Cdd:PRK11281 254 --------RLTLSEKTVQEAQSQDEAARIQANpLVAQELEInlqLSQRLLkaTEKLNTL---------TQQNLRVKNWLD 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1021 RLRAHLLEIEElhtQETVeLQRDLEESRsrqaILEQQVSKSSTAYTSASIrANQQAETlqaqhallqqqrdellaKLGQY 1100
Cdd:PRK11281 317 RLTQSERNIKE---QISV-LKGSLLLSR----ILYQQQQALPSADLIEGL-ADRIADL-----------------RLEQF 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1101 EDRElkQQAALTNLQC---ALEQFQ----NDKDHDIEMATQRIRREMQAQLDRQGQLQLEMS-GL---QQQLAEANQGLR 1169
Cdd:PRK11281 371 EINQ--QRDALFQPDAyidKLEAGHksevTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAiNLqlnQQQLLSVSDSLQ 448
|
.
gi 28571201 1170 A 1170
Cdd:PRK11281 449 S 449
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
762-1064 |
2.13e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 762 LRELLQLQDKLEQQKELMEVDQ--NQQITIIKKELAETTN---QLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQL 836
Cdd:PRK03918 151 VRQILGLDDYENAYKNLGEVIKeiKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 837 LTKEQESGLDSELAKRNQELEdqllakeqqlqlnqAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESqLQGQlaAD 916
Cdd:PRK03918 231 KELEELKEEIEELEKELESLE--------------GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEK--AE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 917 ESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKsdilttnlltEQT 996
Cdd:PRK03918 294 EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER----------HEL 363
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28571201 997 NQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTqetvELQRDLEESRSRQAILEQQVSKSSTA 1064
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE----EIEEEISKITARIGELKKEIKELKKA 427
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
747-976 |
2.96e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 747 QLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIikKELAETTNQLSECQERLTVKEAQLAEIQQ---QLQ 823
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRL--AEYSWDEIDVASAEREIAELEAELERLDAssdDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 824 EVNEERTRLQEQLLTKEQESGldsELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEeqlhakesqlq 903
Cdd:COG4913 689 ALEEQLEELEAELEELEEELD---ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER----------- 754
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28571201 904 sLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQE-NTQYYAEIQRLQPFEQQVKELVKEREKLQDQ 976
Cdd:COG4913 755 -FAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAfNREWPAETADLDADLESLPEYLALLDRLEED 827
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
754-1219 |
4.96e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 4.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 754 QLQADQEKLRELLQLQDKLEQQKELMEVDQNQQitiikkELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQ 833
Cdd:COG4913 256 PIRELAERYAAARERLAELEYLRAALRLWFAQR------RLELLEAELEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 834 EQLltkeQESGLD--SELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQG 911
Cdd:COG4913 330 AQI----RGNGGDrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 912 QL--AADESQQLQQTIDGLGQEKNELikvlqQKHQENtqYYAEIQRLQpfeqqvKELVKEREKLQDQVGFLKEKSDILT- 988
Cdd:COG4913 406 ALaeAEAALRDLRRELRELEAEIASL-----ERRKSN--IPARLLALR------DALAEALGLDEAELPFVGELIEVRPe 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 989 ----------------TNLL------------TEQTNQRL-LQQQQAESQEQQASTLRDLERLRAHLLEIE--------- 1030
Cdd:COG4913 473 eerwrgaiervlggfaLTLLvppehyaaalrwVNRLHLRGrLVYERVRTGLPDPERPRLDPDSLAGKLDFKphpfrawle 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1031 -ELHTQETVELQRDLEE-SRSRQAILEQ-QVSKSSTAYT----SASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDR 1103
Cdd:COG4913 553 aELGRRFDYVCVDSPEElRRHPRAITRAgQVKGNGTRHEkddrRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEER 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1104 --ELKQQ-AALTNLQCALEQFQNDKDHDIEMAtqrirremqaqldrqgQLQLEMSGLQQQLAEANQGLRAAARLSDQLEA 1180
Cdd:COG4913 633 leALEAElDALQERREALQRLAEYSWDEIDVA----------------SAEREIAELEAELERLDASSDDLAALEEQLEE 696
|
490 500 510
....*....|....*....|....*....|....*....
gi 28571201 1181 GQQTIAVLRDEVESLKEANGQLEQRLSSSESSQTDKIDK 1219
Cdd:COG4913 697 LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR 735
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
787-1123 |
5.42e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 5.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 787 ITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSEL-AKRNQELEDQLLAKEQ 865
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALlVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 866 QLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQ--GQLAADESQQLQQT---IDGLGQEKNELIKVLQ 940
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYalANEISRLEQQKQILrerLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 941 QKHQENTQYYAEIQRLQP----FEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEqqastl 1016
Cdd:TIGR02168 327 ELESKLDELAEELAELEEkleeLKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN------ 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1017 rDLERLRAHLLEIEElHTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRAnqQAETLQAQHALLQQQRDELLAK 1096
Cdd:TIGR02168 401 -EIERLEARLERLED-RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE--ELERLEEALEELREELEEAEQA 476
|
330 340
....*....|....*....|....*..
gi 28571201 1097 LGQYEDRELKQQAALTNLQCALEQFQN 1123
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEG 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
954-1215 |
5.46e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 954 QRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDL----ERLRAHLLEI 1029
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIarleERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1030 EELhTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQA 1109
Cdd:COG1196 319 EEL-EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1110 ALTNLQCALEQFQNDKDHDIEMATQRIRREMQAQLDRQGQLQLEMSgLQQQLAEANQGLRAAARLSDQLEAGQQTIAVLR 1189
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260
....*....|....*....|....*.
gi 28571201 1190 DEVESLKEANGQLEQRLSSSESSQTD 1215
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEAD 502
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
644-895 |
6.43e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.11 E-value: 6.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 644 SELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNG----EQLTKQQQQNQADqkkLEELSQLRETLQRRDEDLKEL 719
Cdd:PRK04863 847 VELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNlladETLADRVEEIREQ---LDEAEEAKRFVQQHGNALAQL 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 720 EEQLSAVRQDlDEKSIQMKISQDQHKLQLANLQNQLQAdqekLRELLQLQDKLEQQKELMEVDQNQQITI-IKKELAETT 798
Cdd:PRK04863 924 EPIVSVLQSD-PEQFEQLKQDYQQAQQTQRDAKQQAFA----LTEVVQRRAHFSYEDAAEMLAKNSDLNEkLRQRLEQAE 998
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 799 NQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQE---------SGLDSELAKRNQELEDQLLAK------ 863
Cdd:PRK04863 999 QERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQElqdlgvpadSGAEERARARRDELHARLSANrsrrnq 1078
|
250 260 270
....*....|....*....|....*....|...
gi 28571201 864 -EQQLQLNQAELEKLQETLRVNEEQLLAKEEQL 895
Cdd:PRK04863 1079 lEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
757-916 |
6.81e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 6.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 757 ADQEKLRELLQLQDKLEQQKELMEVDQN--QQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQE 834
Cdd:COG1579 1 AMPEDLRALLDLQELDSELDRLEHRLKElpAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 835 QL-----------LTKEQESgldseLAKRNQELEDQLL-------AKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLH 896
Cdd:COG1579 81 QLgnvrnnkeyeaLQKEIES-----LKRRISDLEDEILelmerieELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
170 180
....*....|....*....|
gi 28571201 897 AKESQLQSLESQLQGQLAAD 916
Cdd:COG1579 156 AELEELEAEREELAAKIPPE 175
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
644-1211 |
8.92e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 8.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 644 SELLAKMEQKEQEylQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQL 723
Cdd:PRK02224 190 DQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETI 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 724 SAVRQDLDEksiqmkisqdqhklqlanLQNQLQADQEKLRELLQLQDKLEQQKELMEVDqnqqITIIKKELAETTNQLSE 803
Cdd:PRK02224 268 AETEREREE------------------LAEEVRDLRERLEELEEERDDLLAEAGLDDAD----AEAVEARREELEDRDEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 804 CQERltvkeaqLAEIQQQLQEVNEERTRLQEQLLTKEQESgldSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRV 883
Cdd:PRK02224 326 LRDR-------LEECRVAAQAHNEEAESLREDADDLEERA---EELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 884 NEEQLLAKEEQLHAkesqlqslesqlqgqlAADESQQLQQTIDGLGQEKNEL---IKVLQQKHQENTQYYAE-------- 952
Cdd:PRK02224 396 LRERFGDAPVDLGN----------------AEDFLEELREERDELREREAELeatLRTARERVEEAEALLEAgkcpecgq 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 953 -------IQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEqtnqrllqqqqaesqeqqastlRDLERLRAH 1025
Cdd:PRK02224 460 pvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE----------------------DRIERLEER 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1026 LLEIEELHTQ--ETVELQRD-LEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAkLGQYED 1102
Cdd:PRK02224 518 REDLEELIAErrETIEEKRErAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES-LERIRT 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1103 relkQQAALTNLQCALEQFQNDKDHDIEMATQRiRREMQAQLDRQGQLQLEMSG-----LQQQLAEANQGLRAAARLSDQ 1177
Cdd:PRK02224 597 ----LLAAIADAEDEIERLREKREALAELNDER-RERLAEKRERKRELEAEFDEarieeAREDKERAEEYLEQVEEKLDE 671
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 28571201 1178 LEAG----QQTIAVLR---DEVESLKEANGQLEQRLSSSES 1211
Cdd:PRK02224 672 LREErddlQAEIGAVEnelEELEELRERREALENRVEALEA 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
670-888 |
1.04e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 670 ELDKRNKLLER------NGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEksiqmkisqdq 743
Cdd:COG4913 591 EKDDRRRIRSRyvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD----------- 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 744 hKLQLANLQNQLQADQEKLRELLQLQDKLEQqkelmevdqnqqitiIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQ 823
Cdd:COG4913 660 -EIDVASAEREIAELEAELERLDASSDDLAA---------------LEEQLEELEAELEELEEELDELKGEIGRLEKELE 723
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28571201 824 EVNEERTRLQEQL--LTKEQESGLDSELAKRNQELEDQLLAKEQQLQLnQAELEKLQETLRVNEEQL 888
Cdd:COG4913 724 QAEEELDELQDRLeaAEDLARLELRALLEERFAAALGDAVERELRENL-EERIDALRARLNRAEEEL 789
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
162-302 |
2.02e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 162 LNNRIAELEQLNEQLNVSLEELDSQHELAMRDVLEHKTQLAGQ-VASLKQLQADRlvehelsnARQQKQLDELRQTSSAA 240
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREI--------ERLERELEERERRRARL 364
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571201 241 KKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAKEK 302
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
700-867 |
2.06e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 700 EELSQLREtLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQH---KLQLANLQNQLQADQEKLRELLQLQDKLEQQk 776
Cdd:COG1579 4 EDLRALLD-LQELDSELDRLEHRLKELPAELAELEDELAALEARLeaaKTELEDLEKEIKRLELEIEEVEARIKKYEEQ- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 777 eLMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQEsgLDSELAKRNQEL 856
Cdd:COG1579 82 -LGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE--LDEELAELEAEL 158
|
170
....*....|.
gi 28571201 857 EdQLLAKEQQL 867
Cdd:COG1579 159 E-ELEAEREEL 168
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
645-966 |
2.38e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 48.36 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 645 ELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLS 724
Cdd:COG4372 49 QLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 725 AVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSEC 804
Cdd:COG4372 129 QQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 805 QERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVN 884
Cdd:COG4372 209 IESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 885 EEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVK 964
Cdd:COG4372 289 EEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVA 368
|
..
gi 28571201 965 EL 966
Cdd:COG4372 369 DG 370
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
813-1074 |
2.80e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 813 AQLAEIQQQLQEVNEERTRLQEQLltkeqesgldSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKE 892
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL----------AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 893 EQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGL--GQEKNELIKVLqqkhqentQYYAEIQRLQpfEQQVKELVKER 970
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLlsPEDFLDAVRRL--------QYLKYLAPAR--REQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 971 EKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESqeqqastlrdlERLRAHLLEIEELHTQETVELQRDLEESRSR 1050
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAER-----------QKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250 260
....*....|....*....|....
gi 28571201 1051 QAILEQQVSKSSTAYTSASIRANQ 1074
Cdd:COG4942 229 IARLEAEAAAAAERTPAAGFAALK 252
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
741-952 |
4.75e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 4.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 741 QDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKElmevDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQ 820
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYN----ELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 821 QLQEVNEERTRLQEQLLTKEQESGLD-----SELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQL 895
Cdd:COG3883 94 ALYRSGGSVSYLDVLLGSESFSDFLDrlsalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 28571201 896 HAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAE 952
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
704-940 |
4.79e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.13 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 704 QLRETLQRRDEDLKELEEQLSAvrQDLDEKSIQmkISQdqhklQLANLQNQLQADQEKLRE----LLQL-QDKLEQQKEL 778
Cdd:PRK10929 83 ELRQQLNNERDEPRSVPPNMST--DALEQEILQ--VSS-----QLLEKSRQAQQEQDRAREisdsLSQLpQQQTEARRQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 779 MEVDQNQQiTIIKKELAETTNQLSECQERLTVKEAQLAEIQ-QQLQEVN-EERTRLQEQLLTKEQESgLDSELakrnQEL 856
Cdd:PRK10929 154 NEIERRLQ-TLGTPNTPLAQAQLTALQAESAALKALVDELElAQLSANNrQELARLRSELAKKRSQQ-LDAYL----QAL 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 857 EDQLLAKEQQlqlnqaeleklqetlrvNEEQLLAKEEQLHAKESQL-QSLESQLQ--GQLAADESQQLQQtIDGLG---- 929
Cdd:PRK10929 228 RNQLNSQRQR-----------------EAERALESTELLAEQSGDLpKSIVAQFKinRELSQALNQQAQR-MDLIAsqqr 289
|
250
....*....|.
gi 28571201 930 QEKNELIKVLQ 940
Cdd:PRK10929 290 QAASQTLQVRQ 300
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
812-991 |
5.04e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 5.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 812 EAQLAEIQQQLQEVNE-----ERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAK------EQQLQLNQAELEKLQET 880
Cdd:COG4913 224 FEAADALVEHFDDLERahealEDAREQIELLEPIRELAERYAAARERLAELEYLRAAlrlwfaQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 881 LRVNEEQLLAKEEQLHAKESQLQSLESQLQGQlAADESQQLQQTIDGLGQEKNELIKVLQqkhqentQYYAEIQRLQ-PF 959
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGN-GGDRLEQLEREIERLERELEERERRRA-------RLEALLAALGlPL 375
|
170 180 190
....*....|....*....|....*....|..
gi 28571201 960 EQQVKELVKEREKLQDQVGFLKEKSDILTTNL 991
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
700-974 |
5.67e-05 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 47.87 E-value: 5.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 700 EELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQ--LQADQEKLRELlQLQDKLEQQKE 777
Cdd:PRK10246 216 EQVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQALaaEEKAQPQLAAL-SLAQPARQLRP 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 778 LMEVDQNQQitiikKELAETTNQLSECQERLTVKEAQLAEI----QQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRN 853
Cdd:PRK10246 295 HWERIQEQS-----AALAHTRQQIEEVNTRLQSTMALRARIrhhaAKQSAELQAQQQSLNTWLAEHDRFRQWNNELAGWR 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 854 QELEDQLLAKEQQLQLNQ--AELEKLQETLRVNEEQLLAKEE----QLHAKESQLQSLESQLQGQLAADES--QQLQQTI 925
Cdd:PRK10246 370 AQFSQQTSDREQLRQWQQqlTHAEQKLNALPAITLTLTADEVaaalAQHAEQRPLRQRLVALHGQIVPQQKrlAQLQVAI 449
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 28571201 926 DGLGQEKNELIKVLQQKHQ---ENTQYYAEIQRLQPFEQQVKELVKEREKLQ 974
Cdd:PRK10246 450 QNVTQEQTQRNAALNEMRQrykEKTQQLADVKTICEQEARIKDLEAQRAQLQ 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
42-983 |
5.87e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 5.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 42 ASVQDAEQQAKTALELLAETQEQKEQLDKRCEEKDREIAALRRELAKSKQKQEsqlaastsatrepqLQNEEPNVEdswC 121
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA--------------LLKEKREYE---G 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 122 WEPDGGDEKGATGAGSGDSASRDKESGLVDIALGNDDvvrLNNRIAELEQLNEQLNVSLEELDSQHELAMRDVLEhktQL 201
Cdd:TIGR02169 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISE---LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG---EL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 202 AGQVASLKQLQADRLVEHELSNARQQK---QLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIER 278
Cdd:TIGR02169 300 EAEIASLERSIAEKERELEDAEERLAKleaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 279 VRvaeTERERLLKDLEETRQAKEKKTSESSSNssstgkhsedefivvrqadatgsgsasgsDRDPDadvtsppSKEKLRD 358
Cdd:TIGR02169 380 FA---ETRDELKDYREKLEKLKREINELKREL-----------------------------DRLQE-------ELQRLSE 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 359 RLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELklhaeAEQ 438
Cdd:TIGR02169 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL-----AEA 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 439 EGHAQNLEEQLGDLREDNQRLRQELKTSIAQakFRQAIAEEKQEITDLDDADSEYGTF-----ELDKLRA--LLQAEIED 511
Cdd:TIGR02169 496 EAQARASEERVRGGRAVEEVLKASIQGVHGT--VAQLGSVGERYATAIEVAAGNRLNNvvvedDAVAKEAieLLKRRKAG 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 512 RLdSSFPQQKLeRAWNALKDRWHR-------LDLVEqrlVDVQNQQLVSEHEKKTLeadISQYILQCDELMKNNDLLLNE 584
Cdd:TIGR02169 574 RA-TFLPLNKM-RDERRDLSILSEdgvigfaVDLVE---FDPKYEPAFKYVFGDTL---VVEDIEAARRLMGKYRMVTLE 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 585 LDKYKRNKL----ETIEEHHEETIVQLEAQLEEARQKLElaslSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQL 660
Cdd:TIGR02169 646 GELFEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLE----GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 661 QEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQkklEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQmkis 740
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK---SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP---- 794
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 741 qdQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEvdqnqqitiikKELAETTNQLSECQERLTVKEAQLAEIQQ 820
Cdd:TIGR02169 795 --EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE-----------KEIQELQEQRIDLKEQIKSIEKEIENLNG 861
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 821 QLQEVNEERTRLQEQLLTKEQESGldsELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKES 900
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLG---DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 901 QLQSLESQLQGQLAADesqQLQQTIDGLGQEKNELIKVLQQKHQEntqYYAEIQRLQPFEQQVKELVKEREKLQDQVGFL 980
Cdd:TIGR02169 939 PKGEDEEIPEEELSLE---DVQAELQRVEEEIRALEPVNMLAIQE---YEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
...
gi 28571201 981 KEK 983
Cdd:TIGR02169 1013 EKK 1015
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
644-895 |
7.26e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 7.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 644 SELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQL-TKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQ 722
Cdd:COG3096 846 SELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLAdETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPL 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 723 LSAVRQD-LDEKSIQmkisqdQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQIT-IIKKELAETTNQ 800
Cdd:COG3096 926 VAVLQSDpEQFEQLQ------ADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNeKLRARLEQAEEA 999
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 801 LSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQE---------SGLDSELAKRNQELEDQLLAK-------E 864
Cdd:COG3096 1000 RREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQEleelgvqadAEAEERARIRRDELHEELSQNrsrrsqlE 1079
|
250 260 270
....*....|....*....|....*....|.
gi 28571201 865 QQLQLNQAELEKLQETLRVNEEQLLAKEEQL 895
Cdd:COG3096 1080 KQLTRCEAEMDSLQKRLRKAERDYKQEREQV 1110
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
699-1037 |
7.97e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 7.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 699 LEELSQLRETLQRRDEDLKELEEQlsavRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKEL 778
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQ----ELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 779 MEVDQNQQITIIKKELAETTNQLSEcqerltVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELED 858
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENK------EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 859 QLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLqgQLAADESQQLQQTIDGLGQEKNELIKV 938
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEEL--LAKKKLESERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 939 LQQKHQENTQYYAEIQRLQPFEQQVKELVKE--REKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTL 1016
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEeeEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340
....*....|....*....|.
gi 28571201 1017 RDLERLRAHLLEIEELHTQET 1037
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKES 503
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
354-982 |
1.07e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.82 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 354 EKLRDRLVSLESQISELTLANTQLQDAQLEkqlsINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKlh 433
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLE----LENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALN-- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 434 aeaeqeghaqnleeQLGDLREDNQRLRQELKTSIAQakfrqaIAEEKQEITDLDDADSEYGTFELDKLRAllqaeiedrl 513
Cdd:PRK01156 243 --------------ELSSLEDMKNRYESEIKTAESD------LSMELEKNNYYKELEERHMKIINDPVYK---------- 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 514 dssfPQQKLERAWNALKDRWHRLDLVEQrlVDVQNQQLVSEHEK-KTLEADISQYILQCDElMKNNDLLLNELDKYKRNK 592
Cdd:PRK01156 293 ----NRNYINDYFKYKNDIENKKQILSN--IDAEINKYHAIIKKlSVLQKDYNDYIKKKSR-YDDLNNQILELEGYEMDY 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 593 LETIEEHHeetivQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELD 672
Cdd:PRK01156 366 NSYLKSIE-----SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLD 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 673 KrnklLERNGEQLT------------KQQQQNQADQKKLEELSQLRETLQRRDEDLKELEE---QLSAVRQDLDEKSIQM 737
Cdd:PRK01156 441 E----LSRNMEMLNgqsvcpvcgttlGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEkivDLKKRKEYLESEEINK 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 738 KISQDQhklQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEV----DQNQQITIIKKELAETTN-QLSECQERLTVKE 812
Cdd:PRK01156 517 SINEYN---KIESARADLEDIKIKINELKDKHDKYEEIKNRYKSlkleDLDSKRTSWLNALAVISLiDIETNRSRSNEIK 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 813 AQLAEIQQQLQEVNEErtrlqeqllTKEQESGLDSELAKRNQELeDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKE 892
Cdd:PRK01156 594 KQLNDLESRLQEIEIG---------FPDDKSYIDKSIREIENEA-NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEID 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 893 E------QLHAKESQLQSLESQLQGQLAADESQQlqqtidglgQEKNELIKVLQQKHQENTQYYAEIQRlqpfeqqvkeL 966
Cdd:PRK01156 664 SiipdlkEITSRINDIEDNLKKSRKALDDAKANR---------ARLESTIEILRTRINELSDRINDINE----------T 724
|
650
....*....|....*.
gi 28571201 967 VKEREKLQDQVGFLKE 982
Cdd:PRK01156 725 LESMKKIKKAIGDLKR 740
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
644-835 |
1.08e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 644 SELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKE-LEEQ 722
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEeLAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 723 LSAVRQDLDEKSIQMKISQD---QHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKElmevDQNQQITIIKKELAETTN 799
Cdd:COG4942 110 LRALYRLGRQPPLALLLSPEdflDAVRRLQYLKYLAPARREQAEELRADLAELAALRA----ELEAERAELEALLAELEE 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 28571201 800 QLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQ 835
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
785-1048 |
1.54e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 785 QQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQEsglDSELAKRNQELEDQLLAKE 864
Cdd:COG4372 38 FELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAE---LAQAQEELESLQEEAEELQ 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 865 QQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQ 944
Cdd:COG4372 115 EELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 945 ENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRA 1024
Cdd:COG4372 195 NAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTE 274
|
250 260
....*....|....*....|....
gi 28571201 1025 HLLEIEELHTQETVELQRDLEESR 1048
Cdd:COG4372 275 EEELEIAALELEALEEAALELKLL 298
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
391-976 |
1.56e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 391 LGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKtsIAQA 470
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE--IIQE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 471 KFRQAIAEEKQEITDLDDADSEYGTfELDKLRALLQAEIEDRldssfpQQKLERAWNALKDRWHRLDLVEQRL--VDVQN 548
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRS-ELREAKRMYEDKIEEL------EKQLVLANSELTEARTERDQFSQESgnLDDQL 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 549 QQLVSEHEKKTLEADISQyilQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQ 628
Cdd:pfam15921 380 QKLLADLHKREKELSLEK---EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGK 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 629 MEthlisSPEKTpvdSELLAKMEQKEQEYLQLQEQLAFAKTELDKRnkllERNGEQLTKQQQQNQADQKKLE-ELSQLRE 707
Cdd:pfam15921 457 NE-----SLEKV---SSLTAQLESTKEMLRKVVEELTAKKMTLESS----ERTVSDLTASLQEKERAIEATNaEITKLRS 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 708 TLQRRDEDLKELEEQLSAVRQdldeksiqMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQqi 787
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRN--------VQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ-- 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 788 tiIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRL-----------------QEQLLTKEQES------- 843
Cdd:pfam15921 595 --LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvnagserlravkdikqeRDQLLNEVKTSrnelnsl 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 844 GLDSELAKRN-----QELEDQLLAKEQQLQLNQAELEKLQETLRVNE-------EQLLAKEEQLHAKESQLQSLESQLQG 911
Cdd:pfam15921 673 SEDYEVLKRNfrnksEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghamKVAMGMQKQITAKRGQIDALQSKIQF 752
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28571201 912 QLAADESQQLQQTIdgLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQ 976
Cdd:pfam15921 753 LEEAMTNANKEKHF--LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDK 815
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
357-529 |
1.72e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 357 RDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQV-----NLQLRLQQLTVQNQELK 431
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAereiaELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 432 -LHAEAEQ-EGHAQNLEEQLGDLREDNQRLRQELK---TSIAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQ 506
Cdd:COG4913 689 aLEEQLEElEAELEELEEELDELKGEIGRLEKELEqaeEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
170 180
....*....|....*....|...
gi 28571201 507 AEIEDRLDSSfpQQKLERAWNAL 529
Cdd:COG4913 769 ENLEERIDAL--RARLNRAEEEL 789
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
700-935 |
1.75e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 700 EELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQM---------------KISQDQHKLQLANL-QNQLQADQEKLR 763
Cdd:pfam17380 299 ERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYaeqermamerereleRIRQEERKRELERIrQEEIAMEISRMR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 764 ELLQLQDKLEQQKELM--EVDQNQQITIIKKELAETTNQlsECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQ 841
Cdd:pfam17380 379 ELERLQMERQQKNERVrqELEAARKVKILEEERQRKIQQ--QKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 842 ESGLDSELAKRNQ------------ELEDQLLAKEQQLQLNQAELEKLQETL--RVNEEQLLAKE----EQLHAKESQLQ 903
Cdd:pfam17380 457 ERQQQVERLRQQEeerkrkklelekEKRDRKRAEEQRRKILEKELEERKQAMieEERKRKLLEKEmeerQKAIYEEERRR 536
|
250 260 270
....*....|....*....|....*....|..
gi 28571201 904 SLESQLQGQLAADESQQLQQTIDGLGQEKNEL 935
Cdd:pfam17380 537 EAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
360-732 |
1.87e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 360 LVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAE--AE 437
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEriAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 438 QEGHAQNLEEQLGDLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDDAdseygtfELDKLRALLQAEIEDRLDSSF 517
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-------ALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 518 PQQKLERawnalkdrwhRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRN------ 591
Cdd:TIGR02168 825 RLESLER----------RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAlallrs 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 592 ---KLETIEEHHEETIVQLEAQLEEARQKLELASLsSQQQMETHLISSPEKTPVDSELLakMEQKEQEYLQLQEQLAFAK 668
Cdd:TIGR02168 895 eleELSEELRELESKRSELRRELEELREKLAQLEL-RLEGLEVRIDNLQERLSEEYSLT--LEEAEALENKIEDDEEEAR 971
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28571201 669 TELDKRNKLLERNGEqltkqqqQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDE 732
Cdd:TIGR02168 972 RRLKRLENKIKELGP-------VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDR 1028
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
662-1228 |
2.37e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 662 EQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKsiqmkisq 741
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN-------- 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 742 dqhklqLANLQNQLQADQEKLrelLQLQDKLEQQKELmevdqNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQ 821
Cdd:TIGR04523 189 ------IDKIKNKLLKLELLL---SNLKKKIQKNKSL-----ESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQ 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 822 LQEVNEERTRLQEQLLTKEQESgldSELAKRNQELEDQLlaKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQ 901
Cdd:TIGR04523 255 LNQLKDEQNKIKKQLSEKQKEL---EQNNKKIKELEKQL--NQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQ 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 902 LQslesqlqgqlaadesqQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQpfeQQVKELVKEREKLQDQVGFLK 981
Cdd:TIGR04523 330 IS----------------QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ---NEIEKLKKENQSYKQEIKNLE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 982 EKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLL----EIEELHTQETVeLQRDLEESRSRQAILEQQ 1057
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIknnsEIKDLTNQDSV-KELIIKNLDNTRESLETQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1058 VSKsstayTSASIRANQQAetlqaqhallqqqrdelLAKLGQYEDRELKQQAALTNLQCALEQFQNDKDHDIEMATQRIr 1137
Cdd:TIGR04523 470 LKV-----LSRSINKIKQN-----------------LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI- 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1138 remQAQLDRQGQLQLEMSGLQQQLAEANQGLRAAaRLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLSSSESSQTDKI 1217
Cdd:TIGR04523 527 ---EKLESEKKEKESKISDLEDELNKDDFELKKE-NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLI 602
|
570
....*....|.
gi 28571201 1218 DKSLIKSLLIG 1228
Cdd:TIGR04523 603 KEIEEKEKKIS 613
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
814-970 |
2.67e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 45.09 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 814 QLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAE--LEKLQETLRVNEEQLLAK 891
Cdd:PRK12705 31 LAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEeqLDARAEKLDNLENQLEER 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 892 EEQLHAKESQLQSLESQLQGQL---AADESQQLQQTI-----DGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQV 963
Cdd:PRK12705 111 EKALSARELELEELEKQLDNELyrvAGLTPEQARKLLlklldAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIA 190
|
....*..
gi 28571201 964 KELVKER 970
Cdd:PRK12705 191 SETASDL 197
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
212-439 |
2.71e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 212 QADRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLK 291
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 292 DLEETRQAKEKktseSSSNSSSTGKHSEDEFIvVRQADATGSGSASGSDRDpdadvtsppSKEKLRDRLVSLESQISELT 371
Cdd:COG4942 98 ELEAQKEELAE----LLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYLKY---------LAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28571201 372 LANTQLQDAQLEKQLSINMLGEQLVELEKRlrlsEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQE 439
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
699-868 |
2.92e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 45.07 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 699 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQL----------------------- 755
Cdd:PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLdaafrqgehtglqlilsgeesqr 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 756 ------------QADQEKLRELLQLQDKLEQQKELMEVDQNQQITII---KKELAETTNQLSECQERLTVKEAQLAEIQQ 820
Cdd:PRK11637 154 gerilayfgylnQARQETIAELKQTREELAAQKAELEEKQSQQKTLLyeqQAQQQKLEQARNERKKTLTGLESSLQKDQQ 233
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 28571201 821 QLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQEledQLLAKEQQLQ 868
Cdd:PRK11637 234 QLSELRANESRLRDSIARAEREAKARAEREAREAA---RVRDKQKQAK 278
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
857-1138 |
3.16e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 857 EDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELi 936
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDL- 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 937 KVLQQKHQENtqyyaeiqrlqpfEQQVKELVKEREKLQDQVGFLKEKsdilTTNLLTEQtnQRLLQQQQAESQEQQASTL 1016
Cdd:COG4913 688 AALEEQLEEL-------------EAELEELEEELDELKGEIGRLEKE----LEQAEEEL--DELQDRLEAAEDLARLELR 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1017 RDLERLRAHLLeIEELHTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLA- 1095
Cdd:COG4913 749 ALLEERFAAAL-GDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEd 827
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 28571201 1096 KLGQYEDR--ELKQQAALTNlqcaLEQFQNDKDHDIEMATQRIRR 1138
Cdd:COG4913 828 GLPEYEERfkELLNENSIEF----VADLLSKLRRAIREIKERIDP 868
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
784-1001 |
3.95e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 784 NQQITIIKKELAETTNQLSECQER--LTVKEAQLAEIQQQLQEVNEERTRLQEQLL-TKEQESGLDSELAKRNQELEDql 860
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAeAEARLAALRAQLGSGPDALPE-- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 861 LAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQgqlaadesQQLQQTIDGLGQEKNELIKVLQ 940
Cdd:COG3206 259 LLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ--------QEAQRILASLEAELEALQAREA 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28571201 941 QKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLL 1001
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVI 391
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
162-562 |
4.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 162 LNNRIAELEQLNEQLNVSLEELDSQHELAMRDVLEHKTQlagqvASLKQLQADRLvEHELSNARQQkqLDELRQTSSAAK 241
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEER-----AEELREEAAEL-ESELEEAREA--VEDRREEIEELE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 242 KQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAKEKktsesssnssstGKHSEDE 321
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA------------GKCPECG 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 322 fivvrqADATGSGSASGSDRDPDAdvtsppsKEKLRDRLVSLESQISELTLANTQLQDAQlEKQLSINMLGEQLVELEKR 401
Cdd:PRK02224 459 ------QPVEGSPHVETIEEDRER-------VEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRIERLEERREDLEEL 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 402 LrlseAEKEQLQVNLQLRLQQLTVQNQELKLHAEaEQEGHAQNLEEQLGDLRE---DNQRLRQELKTSI----------- 467
Cdd:PRK02224 525 I----AERRETIEEKRERAEELRERAAELEAEAE-EKREAAAEAEEEAEEAREevaELNSKLAELKERIeslerirtlla 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 468 AQAKFRQAI---AEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSfpQQKLERAWNALKDRWHRLDLVEQRLV 544
Cdd:PRK02224 600 AIADAEDEIerlREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEA--REDKERAEEYLEQVEEKLDELREERD 677
|
410
....*....|....*...
gi 28571201 545 DVQNQQLVSEHEKKTLEA 562
Cdd:PRK02224 678 DLQAEIGAVENELEELEE 695
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
647-868 |
4.20e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 647 LAKMEQKEQEYLQLQEQLAFAKTELD--KRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEqls 724
Cdd:pfam17380 374 ISRMRELERLQMERQQKNERVRQELEaaRKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMER--- 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 725 aVRQDLDEKSIQMKISQDQH------KLQLANLQNQLQADQEKLRELLQlqDKLEQQKELMeVDQNQQITIIKKELAETT 798
Cdd:pfam17380 451 -VRLEEQERQQQVERLRQQEeerkrkKLELEKEKRDRKRAEEQRRKILE--KELEERKQAM-IEEERKRKLLEKEMEERQ 526
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28571201 799 NQLSECQERltvkeaQLAEIQQQLQEVNEERTRLQEQLL-TKEQESGLDSelAKRNQELEDQLLAKEQQLQ 868
Cdd:pfam17380 527 KAIYEEERR------REAEEERRKQQEMEERRRIQEQMRkATEERSRLEA--MEREREMMRQIVESEKARA 589
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
811-945 |
4.33e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 43.98 E-value: 4.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 811 KEAQLAEIQQQLQEVNEERTRLQEqllTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQL-- 888
Cdd:pfam09787 56 RDLLREEIQKLRGQIQQLRTELQE---LEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrr 132
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28571201 889 --LAKEEQLHAKESQLQSLESQLQGQLAADESQ---------------QLQQTIDGLGQEKNELIKVLQQKHQE 945
Cdd:pfam09787 133 skATLQSRIKDREAEIEKLRNQLTSKSQSSSSQselenrlhqltetliQKQTMLEALSTEKNSLVLQLERMEQQ 206
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
378-910 |
4.96e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 378 QDAQLEKQLS-INMLGEQLVELEKRLRLSEAEKEQLQvNLQLRLQQLTVQNQELklhaeaeqEGHAQNLEEQLGDLREDN 456
Cdd:PRK03918 198 KEKELEEVLReINEISSELPELREELEKLEKEVKELE-ELKEEIEELEKELESL--------EGSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 457 QRLRQELKTSIAQAKFRQAIAEEKQEITDLDDADSEYgtfeLDKLRallqaEIEDRLdssfpqQKLERAWNALKDRWHRL 536
Cdd:PRK03918 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY----LDELR-----EIEKRL------SRLEEEINGIEERIKEL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 537 DLVEQRLVDVQNQQLVSEHEKKTLEADISQYiLQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQ 616
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEELEERHELY-EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 617 KL-ELASLSSQQQME-THLISSPEKTPVDSELLAKMEQKE--QEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQN 692
Cdd:PRK03918 413 RIgELKKEIKELKKAiEELKKAKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 693 qadqkklEELSQLRETLqrrdEDLKELEEQLSAVrqDLDEksiqmkisqdqhklqlanlqnqLQADQEKLRELLQLQDKL 772
Cdd:PRK03918 493 -------SELIKLKELA----EQLKELEEKLKKY--NLEE----------------------LEKKAEEYEKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 773 EQQKELMEVDQNQqITIIKKELAETTNQLSECQERLTVKEAQLAEIQ-QQLQEVNEERTRLQ----EQLLTKEQESGLDS 847
Cdd:PRK03918 538 KGEIKSLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfynEYLELKDAEKELER 616
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28571201 848 ELaKRNQELEDQLLAKEQQLQLNQAELEKL------------QETLRVNEEQLLAKEEQLHAKESQLQSLESQLQ 910
Cdd:PRK03918 617 EE-KELKKLEEELDKAFEELAETEKRLEELrkeleelekkysEEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
242-888 |
6.29e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 6.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 242 KQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAKEKKTSESSsnssstgkhsede 321
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG------------- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 322 fivvrqadatgsgsasgsdrdpdadvtsppSKEKLRDRLVSLESQISELTLANTQLQdaqlEKQLSINMLGEQLVELEKR 401
Cdd:PRK03918 253 ------------------------------SKRKLEEKIRELEERIEELKKEIEELE----EKVKELKELKEKAEEYIKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 402 LRLSEAEKEQLQvNLQLRLQQLTVQNQELKlhaeaEQEGHAQNLEEQLGDLREDNQRLRQELKtsiAQAKFRQAIAEEKQ 481
Cdd:PRK03918 299 SEFYEEYLDELR-EIEKRLSRLEEEINGIE-----ERIKELEEKEERLEELKKKLKELEKRLE---ELEERHELYEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 482 EITDLDDADSEYGTFELDKLRALLQaEIEDRldssfpQQKLERAWNALKDRWHRLDLVEQRLVDVQNQ------------ 549
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKELE-ELEKA------KEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcg 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 550 QLVSEHEKKTLeadISQYILQCDELMKNNDLLLNELDKYKRNKletieehheetiVQLEAQLEEARQklelasLSSQQQM 629
Cdd:PRK03918 443 RELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKEL------------RELEKVLKKESE------LIKLKEL 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 630 ETHLISSPEKTpvDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERngeqltkqqqqnqadqkkLEELSQLRETL 709
Cdd:PRK03918 502 AEQLKELEEKL--KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK------------------LEELKKKLAEL 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 710 QRRdedLKELEEQLSAVRQDLDEKSIQmkisqdqhklqlanlqnQLQADQEKLRELLQLQDKLEQQKelmevDQNQQITI 789
Cdd:PRK03918 562 EKK---LDELEEELAELLKELEELGFE-----------------SVEELEERLKELEPFYNEYLELK-----DAEKELER 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 790 IKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVN-----EERTRLQEQLLTKEQE-SGLDSELaKRNQELEDQLLAK 863
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRElAGLRAEL-EELEKRREEIKKT 695
|
650 660
....*....|....*....|....*
gi 28571201 864 EQQLQLNQAELEKLQETLRVNEEQL 888
Cdd:PRK03918 696 LEKLKEELEEREKAKKELEKLEKAL 720
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
649-974 |
6.43e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 649 KMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDL-KELEEQLSAVR 727
Cdd:TIGR00618 529 RMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLqDLTEKLSEAED 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 728 QDLDEKSIQM-KISQDQHKLQLANLQNQLQADQEKLR------ELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTN- 799
Cdd:TIGR00618 609 MLACEQHALLrKLQPEQDLQDVRLHLQQCSQELALKLtalhalQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSe 688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 800 --QLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQEsgLDSELAKRNQELedQLLAKEQQLQLNQAELEKL 877
Cdd:TIGR00618 689 keQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD--LAAREDALNQSL--KELMHQARTVLKARTEAHF 764
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 878 QETLRVN-EEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRL 956
Cdd:TIGR00618 765 NNNEEVTaALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATL 844
|
330
....*....|....*...
gi 28571201 957 QPFEQQVKELVKEREKLQ 974
Cdd:TIGR00618 845 GEITHQLLKYEECSKQLA 862
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
999-1210 |
6.81e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 999 RLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQR---DLEESRSRQAILEQQVSKSSTAYTSASIRANQQ 1075
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEElelELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1076 AETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALEQFQNDKDHDIEMATQRIRREMQAQLDRQGQLQLEMS 1155
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 28571201 1156 GLQQQLAEANQGLRAAARLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLSSSE 1210
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
406-1124 |
8.35e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 8.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 406 EAEKEQLQVNLQLrLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITD 485
Cdd:TIGR00618 193 HGKAELLTLRSQL-LTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 486 LDDADSEYG------TFELDKLRALLQAEIEDRLDssfpqQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKT 559
Cdd:TIGR00618 272 LRAQEAVLEetqeriNRARKAAPLAAHIKAVTQIE-----QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 560 LEADISQYILQCDElmkNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEK 639
Cdd:TIGR00618 347 LQTLHSQEIHIRDA---HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQ 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 640 tpVDSELLAKMEQKEQEYLQLQEQLAFAKTELDK-RNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKE 718
Cdd:TIGR00618 424 --GQLAHAKKQQELQQRYAELCAAAITCTAQCEKlEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQE 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 719 LEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQnqqitiikkELAETT 798
Cdd:TIGR00618 502 EPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ---------EIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 799 NQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQ 878
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQ 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 879 ETLrvneeqlLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQ- 957
Cdd:TIGR00618 653 LTL-------TQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEn 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 958 PFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAhlleieelhtqet 1037
Cdd:TIGR00618 726 ASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNR------------- 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1038 vELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDReLKQQAALTNLQCA 1117
Cdd:TIGR00618 793 -LREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEEC-SKQLAQLTQEQAK 870
|
....*..
gi 28571201 1118 LEQFQND 1124
Cdd:TIGR00618 871 IIQLSDK 877
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
226-925 |
8.50e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 8.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 226 QQKQLDELRQTSSAAKKQQEELQRRveQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKdlEETRQAKEKKTS 305
Cdd:TIGR00618 265 LRARIEELRAQEAVLEETQERINRA--RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLM--KRAAHVKQQSSI 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 306 ESSSNSSSTGKHSEDEFIVVRQADATGSGSASGSDRDPDADVTSPPSKEKLRDRLVSLESQISELTlantQLQDAQLEKQ 385
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQ----REQATIDTRT 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 386 LSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEghaqnLEEQLGDLREDNQRlRQELKT 465
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE-----REQQLQTKEQIHLQ-ETRKKA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 466 SIAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIedrldssfpqQKLERAWNALKDRWHRLDLVEQRLVD 545
Cdd:TIGR00618 491 VVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE----------QTYAQLETSEEDVYHQLTSERKQRAS 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 546 VQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKlETIEEHHEETIVQLEAQLEEARQKLELASLSS 625
Cdd:TIGR00618 561 LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE-DMLACEQHALLRKLQPEQDLQDVRLHLQQCSQ 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 626 QQQMEthlisspektpvdselLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERngeqltkqQQQNQADQKKLEELSQL 705
Cdd:TIGR00618 640 ELALK----------------LTALHALQLTLTQERVREHALSIRVLPKELLASR--------QLALQKMQSEKEQLTYW 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 706 RETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQ 785
Cdd:TIGR00618 696 KEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQ 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 786 QITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQlltkeqesgldseLAKRNQELEDQLLAKEQ 865
Cdd:TIGR00618 776 TGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCET-------------LVQEEEQFLSRLEEKSA 842
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 866 QLQLNQAELEKLQETLRvNEEQLLAKEEQLHAKESQLQSLEsQLQGQLAADESQQLQQTI 925
Cdd:TIGR00618 843 TLGEITHQLLKYEECSK-QLAQLTQEQAKIIQLSDKLNGIN-QIKIQFDGDALIKFLHEI 900
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
351-918 |
8.68e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 8.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 351 PSKEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQL--QVNLQLRLQQLTVQNQ 428
Cdd:pfam12128 241 PEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdELNGELSAADAAVAKD 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 429 ELKLHAEAEQEG------------HAQNLEEQLGDLREDNQRLR-QELKTSIAQAKFRQAIAEEKQEITDlDDADSEYGT 495
Cdd:pfam12128 321 RSELEALEDQHGafldadietaaaDQEQLPSWQSELENLEERLKaLTGKHQDVTAKYNRRRSKIKEQNNR-DIAGIKDKL 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 496 FELDKLRALLQAEIEDRLdssfpqQKLERAWNalkdrwhrlDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELM 575
Cdd:pfam12128 400 AKIREARDRQLAVAEDDL------QALESELR---------EQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 576 --KNNDLLLNELDKyKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQM----ETHLISSPEKTPVDSELLAK 649
Cdd:pfam12128 465 qlENFDERIERARE-EQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQsaldELELQLFPQAGTLLHFLRKE 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 650 MEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGE----------QLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKEL 719
Cdd:pfam12128 544 APDWEQSIGKVISPELLHRTDLDPEVWDGSVGGElnlygvkldlKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 720 EEQLSAVRQDLDEKSIQM---KISQDQHKLQLANLQNQLQADQEKLRELL--------QLQDKLEQQKELMEVDQNQQIT 788
Cdd:pfam12128 624 EEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQSEKDKKNKALaerkdsanERLNSLEAQLKQLDKKHQAWLE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 789 IIKKELAE-TTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQES----GLDSE-LAKRNQELEDqLLA 862
Cdd:pfam12128 704 EQKEQKREaRTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDlaslGVDPDvIAKLKREIRT-LER 782
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 28571201 863 KEQQLQLNQAELEKLQETLRvneEQLLAKEEQLHAKESQLQSLESQLQGQLAADES 918
Cdd:pfam12128 783 KIERIAVRRQEVLRYFDWYQ---ETWLQRRPRLATQLSNIERAISELQQQLARLIA 835
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
645-1066 |
8.82e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 645 ELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNG--EQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQ 722
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 723 LSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQlqdklEQQKELMEVDQNQQITIIKKELAETTNQLS 802
Cdd:COG4717 172 LAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE-----EAQEELEELEEELEQLENELEAAALEERLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 803 ECQERLTVkEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQL----QLNQAELEKLQ 878
Cdd:COG4717 247 EARLLLLI-AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALpaleELEEEELEELL 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 879 ETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNElikvlqqkhQENTQYYAEIQRLQP 958
Cdd:COG4717 326 AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGV---------EDEEELRAALEQAEE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 959 FEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQrlLQQQQAESQEQQASTLRDLERLRAHLLEIEElhTQETV 1038
Cdd:COG4717 397 YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE--LEEELEELEEELEELREELAELEAELEQLEE--DGELA 472
|
410 420
....*....|....*....|....*...
gi 28571201 1039 ELQRDLEESRSRQAILEQQVSKSSTAYT 1066
Cdd:COG4717 473 ELLQELEELKAELRELAEEWAALKLALE 500
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
699-969 |
1.43e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.90 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 699 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQA--------DQEKLRE-LLQLQ 769
Cdd:PRK04778 125 LEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQfveltesgDYVEAREiLDQLE 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 770 DKLEQQKELMEV-------------DQNQQI----------------TIIKKELAETTNQLSECQERLtvKEAQLAEIQQ 820
Cdd:PRK04778 205 EELAALEQIMEEipellkelqtelpDQLQELkagyrelveegyhldhLDIEKEIQDLKEQIDENLALL--EELDLDEAEE 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 821 QLQEVNEERTRLQEQLltkEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLlakeEQLHAKES 900
Cdd:PRK04778 283 KNEEIQERIDQLYDIL---EREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL----ESVRQLEK 355
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28571201 901 QLQSLESQLQGQLAADESQQLQQTIdgLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKE 969
Cdd:PRK04778 356 QLESLEKQYDEITERIAEQEIAYSE--LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
702-909 |
1.61e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 702 LSQLRETLQR----RDEDLKELEEQLSAVRQDLDE-----KSIQMKISQDQHKLQLANLQNQLQADQEKL-RELLQLQDK 771
Cdd:pfam05557 11 LSQLQNEKKQmeleHKRARIELEKKASALKRQLDResdrnQELQKRIRLLEKREAEAEEALREQAELNRLkKKYLEALNK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 772 LEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAK 851
Cdd:pfam05557 91 KLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQ 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28571201 852 RNQELEDQL---------LAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQL 909
Cdd:pfam05557 171 RIKELEFEIqsqeqdseiVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKL 237
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
644-812 |
2.16e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 644 SELLAKMEQKEQ-----EYLQLQEQLAFAKTELDKRNKLLERNGEQLtkqqqqnqadqkkLEELSQLRETLQRRDEDLKE 718
Cdd:COG2433 379 EEALEELIEKELpeeepEAEREKEHEERELTEEEEEIRRLEEQVERL-------------EAEVEELEAELEEKDERIER 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 719 LEEQLSAVRQdldEKSIQMKISQDQHKLQ--LANLQNQLQADQEKLRELlqlQDKLEQQKELMEVDQNQQITIIKKELAE 796
Cdd:COG2433 446 LERELSEARS---EERREIRKDREISRLDreIERLERELEEERERIEEL---KRKLERLKELWKLEHSGELVPVKVVEKF 519
|
170
....*....|....*.
gi 28571201 797 TTNQLSECQERLTVKE 812
Cdd:COG2433 520 TKEAIRRLEEEYGLKE 535
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
319-1154 |
2.28e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 319 EDEFIVVRQADATGSGSASGSDRdpdadvtsPPSKEKLRDRLVSLESQISELTLANTQLQDAQLE--KQLSINMLGEQLV 396
Cdd:pfam02463 92 KEEVSIRRRVYRGGDSEYYINGK--------NVTKKEVAELLESQGISPEAYNFLVQGGKIEIIAmmKPERRLEIEEEAA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 397 ELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLR--QELKTSIAQAKFRQ 474
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLylDYLKLNEERIDLLQ 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 475 AIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEdrldssfpQQKLERAWNALKDRwhRLDLVEQRLVDVQNQQLVSE 554
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK--------EKKLQEEELKLLAK--EEEELKSELLKLERRKVDDE 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 555 HEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLI 634
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 635 SSpEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNG-EQLTKQQQQNQADQKKLEELSQLRETLQRRD 713
Cdd:pfam02463 394 EE-ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIElKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 714 EDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKE 793
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 794 LAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRL-QEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQA 872
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLkSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 873 ELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQyYAE 952
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQRE-KEE 711
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 953 IQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEEL 1032
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1033 HTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRanQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALT 1112
Cdd:pfam02463 792 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI--KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 869
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 28571201 1113 NLQCALEQFQNDKDHDIEMATQRIRREMQAQLDRQGQLQLEM 1154
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNL 911
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
676-1049 |
2.32e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 676 KLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKiSQDQHKLQLANLQNQL 755
Cdd:TIGR00606 210 KYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIK-ALKSRKKQMEKDNSEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 756 --------QADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNE 827
Cdd:TIGR00606 289 elkmekvfQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDS 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 828 ERTRLQEQLLTKEQESGLDSELAKRN--------------------QELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQ 887
Cdd:TIGR00606 369 LIQSLATRLELDGFERGPFSERQIKNfhtlvierqedeaktaaqlcADLQSKERLKQEQADEIRDEKKGLGRTIELKKEI 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 888 LLAKEEQLHAKESQLQSLESQLQGQLAADES-----------------QQLQQTIDGLGQEKNELIKVLQQKHQENtqyy 950
Cdd:TIGR00606 449 LEKKQEELKFVIKELQQLEGSSDRILELDQElrkaerelskaeknsltETLKKEVKSLQNEKADLDRKLRKLDQEM---- 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 951 AEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIE 1030
Cdd:TIGR00606 525 EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLE 604
|
410
....*....|....*....
gi 28571201 1031 ELHTQETVELQRDLEESRS 1049
Cdd:TIGR00606 605 QNKNHINNELESKEEQLSS 623
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
230-973 |
2.38e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 230 LDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQdtaELIERVRVAETERERLLKDLEETRQAKEKKTSESSS 309
Cdd:TIGR00618 175 LDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPD---TYHERKQVLEKELKHLREALQQTQQSHAYLTQKREA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 310 NSSSTGKHSEDEFIVVRQADATgsgsasgsdrdpdadvTSPPSKEKLRDRLvSLESQISELTLANTQLQDAQLEKQLSIN 389
Cdd:TIGR00618 252 QEEQLKKQQLLKQLRARIEELR----------------AQEAVLEETQERI-NRARKAAPLAAHIKAVTQIEQQAQRIHT 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 390 MLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKTSIAQ 469
Cdd:TIGR00618 315 ELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQK 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 470 AKFRQAIAE-EKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSFPQ-------------QKLERAWNALKDRWHR 535
Cdd:TIGR00618 395 LQSLCKELDiLQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAaitctaqceklekIHLQESAQSLKEREQQ 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 536 LDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDEL-MKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEA 614
Cdd:TIGR00618 475 LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPnPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 615 RQKLELASLSSQQQMETHLISSPEKTPVdSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQA 694
Cdd:TIGR00618 555 RKQRASLKEQMQEIQQSFSILTQCDNRS-KEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLH 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 695 DQKKLEELSQLRETLQRRDEDLKELEEQLSAVRqdldeksiqmkiSQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQ 774
Cdd:TIGR00618 634 LQQCSQELALKLTALHALQLTLTQERVREHALS------------IRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 775 QKELMevdqnQQITIIKKELAETTNQLSEcqerltVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQ 854
Cdd:TIGR00618 702 CQTLL-----RELETHIEEYDREFNEIEN------ASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEV 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 855 ELEDQLLAKEQQLQLNQAELEKLQETLrvneEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNE 934
Cdd:TIGR00618 771 TAALQTGAELSHLAAEIQFFNRLREED----THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGE 846
|
730 740 750
....*....|....*....|....*....|....*....
gi 28571201 935 LikvlqqkHQENTQYYAEIQRLQPFEQQVKELVKEREKL 973
Cdd:TIGR00618 847 I-------THQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
760-977 |
2.81e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.15 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 760 EKLRELLQLQDKLEQQKELMEVDQnqqitiIKKELAETTNQLSECQERLtvKEAQLAEIQQQLQEVNEERTRLQEQLltk 839
Cdd:pfam06160 211 DQLEELKEGYREMEEEGYALEHLN------VDKEIQQLEEQLEENLALL--ENLELDEAEEALEEIEERIDQLYDLL--- 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 840 EQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLlakeEQLHAKESQLQSLESQLQgqlaadesq 919
Cdd:pfam06160 280 EKEVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNENEL----ERVRGLEKQLEELEKRYD--------- 346
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 28571201 920 qlqqtidglgqeknelikVLQQKHQENTQYYAEIQ-RLQPFEQQVKELVKEREKLQDQV 977
Cdd:pfam06160 347 ------------------EIVERLEEKEVAYSELQeELEEILEQLEEIEEEQEEFKESL 387
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
785-1160 |
3.37e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 785 QQITIIKKELAETTNQLSECQERLTvkeaqlaEIQQQLQEVNEERTRLQEqlltkeqesglDSELAKRNQELEDQLLAKE 864
Cdd:PRK04863 286 EEALELRRELYTSRRQLAAEQYRLV-------EMARELAELNEAESDLEQ-----------DYQAASDHLNLVQTALRQQ 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 865 QQLQLNQAELEKLQETLrvnEEQLLAKE---EQLHAKESQLQSLES---QLQGQLAadesqQLQQTIDglgqeknelikv 938
Cdd:PRK04863 348 EKIERYQADLEELEERL---EEQNEVVEeadEQQEENEARAEAAEEevdELKSQLA-----DYQQALD------------ 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 939 LQQKhqENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLteQTNQRLLQQQQAESQ--------- 1009
Cdd:PRK04863 408 VQQT--RAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELL--SLEQKLSVAQAAHSQfeqayqlvr 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1010 ------------EQQASTLRDLERLRAHLLEIEELHtQETVELQRDLEESRSRQAILEQQVSKSSTAYTSAS------IR 1071
Cdd:PRK04863 484 kiagevsrseawDVARELLRRLREQRHLAEQLQQLR-MRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDeleqlqEE 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1072 ANQQAETLQAQHALLQQQRDELLAKLGQYEDR--ELKQQA-ALTNLQCALEQFQNDKDHDIEMAtQRIRREMQAQLDRQG 1148
Cdd:PRK04863 563 LEARLESLSESVSEARERRMALRQQLEQLQARiqRLAARApAWLAAQDALARLREQSGEEFEDS-QDVTEYMQQLLERER 641
|
410
....*....|..
gi 28571201 1149 QLQLEMSGLQQQ 1160
Cdd:PRK04863 642 ELTVERDELAAR 653
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
699-915 |
3.46e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.60 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 699 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKisqdqhKLQLANLQ----NQLQADQEKLRELLQLQDKLEQ 774
Cdd:COG0497 157 LEEYREAYRAWRALKKELEELRADEAERARELDLLRFQLE------ELEAAALQpgeeEELEEERRRLSNAEKLREALQE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 775 QKELMEVDQN---QQITIIKKEL---AETTNQLSECQERLTVKEAQLAEIQQQLQ------EVNEER-----TRLQE--Q 835
Cdd:COG0497 231 ALEALSGGEGgalDLLGQALRALerlAEYDPSLAELAERLESALIELEEAASELRryldslEFDPERleeveERLALlrR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 836 LLTKEQESgLDsELAKRNQELEDQLlakeQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAK-ESQLQSLESQLQGQLA 914
Cdd:COG0497 311 LARKYGVT-VE-ELLAYAEELRAEL----AELENSDERLEELEAELAEAEAELLEAAEKLSAArKKAAKKLEKAVTAELA 384
|
.
gi 28571201 915 A 915
Cdd:COG0497 385 D 385
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
750-865 |
3.99e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 750 NLQNQLQAD-QEKLRELLQLQDKLEQQKELMEvDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEE 828
Cdd:PRK12704 68 KLRNEFEKElRERRNELQKLEKRLLQKEENLD-RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 28571201 829 RTRLQE----QLLTKEQESGLDSELAKRNQELEDQllAKEQ 865
Cdd:PRK12704 147 ISGLTAeeakEILLEKVEEEARHEAAVLIKEIEEE--AKEE 185
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
720-976 |
4.34e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 720 EEQLSAVRQDLDEksiqmkISQDQHKLQLANLQNQLQADQekLRELLQLQDKLEQQKELM-EVDQNQQITIIKKELA--- 795
Cdd:COG3096 835 EAELAALRQRRSE------LERELAQHRAQEQQLRQQLDQ--LKEQLQLLNKLLPQANLLaDETLADRLEELREELDaaq 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 796 ETTNQLSECQERLTVKEAQLAEIQ---QQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQEL--EDQllakEQQLQLN 870
Cdd:COG3096 907 EAQAFIQQHGKALAQLEPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFsyEDA----VGLLGEN 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 871 QAELEKLQETLRVNEEQLLAKEEQLHAKESQ-------LQSLESQLQGqlAADESQQLQQTIDGLG------------QE 931
Cdd:COG3096 983 SDLNEKLRARLEQAEEARREAREQLRQAQAQysqynqvLASLKSSRDA--KQQTLQELEQELEELGvqadaeaeerarIR 1060
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 28571201 932 KNELIKVLQQKHQENTQYYAEIQRLQ-PFEQQVKELVKEREKLQDQ 976
Cdd:COG3096 1061 RDELHEELSQNRSRRSQLEKQLTRCEaEMDSLQKRLRKAERDYKQE 1106
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
242-562 |
5.41e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 242 KQQEELQRRVEQQEAELIEMQDLldkrRQDTAELIErvrvaETERERLLKDLEETRQAKEKKTSESSSNSSSTGKHSEDE 321
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERL----RQEKEEKAR-----EVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 322 FIVVRQADAtgsgsasgsdrdpdadvtsppSKEKLRDRLVSLESQISELtlanTQLQDAQLEKQLSiNMLGEQLVELEKR 401
Cdd:pfam17380 350 LERIRQEER---------------------KRELERIRQEEIAMEISRM----RELERLQMERQQK-NERVRQELEAARK 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 402 LRLSEAE-----KEQLQVNLQLRLQQLTVQNQELK-LHAEAEQEGHAQNLEE-----QLGDLREDNQRLRQELKTSIAQA 470
Cdd:pfam17380 404 VKILEEErqrkiQQQKVEMEQIRAEQEEARQREVRrLEEERAREMERVRLEEqerqqQVERLRQQEEERKRKKLELEKEK 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 471 KFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSFPQqklERAWNALKDRWHRLDLVEQRlvDVQNQQ 550
Cdd:pfam17380 484 RDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEE---ERRREAEEERRKQQEMEERR--RIQEQM 558
|
330
....*....|..
gi 28571201 551 LVSEHEKKTLEA 562
Cdd:pfam17380 559 RKATEERSRLEA 570
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
706-914 |
6.01e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 41.19 E-value: 6.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 706 RETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQhkLQLANLQNQLQADQEKLRELLQLQDKLEQQ--KELMEVDQ 783
Cdd:PTZ00108 968 ENGKIKKYSDALDILKEFYLVRLDLYKKRKEYLLGKLE--RELARLSNKVRFIKHVINGELVITNAKKKDlvKELKKLGY 1045
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 784 NQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEdQLLAK 863
Cdd:PTZ00108 1046 VRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELE-KLKNT 1124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 28571201 864 EQQlQLNQAELEKLQETLrvneEQLLAKEEQLHAKESQLQSLESQLQGQLA 914
Cdd:PTZ00108 1125 TPK-DMWLEDLDKFEEAL----EEQEEVEEKEIAKEQRLKSKTKGKASKLR 1170
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
157-300 |
6.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 157 DDVVRLNNRIAELEQLNEQLNVSLEELDSQHEL--AMRDVLEHKTQLAGQVASLKQLQaDRLVEHELSN---ARQQKQLD 231
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREAlqRLAEYSWDEIDVASAEREIAELE-AELERLDASSddlAALEEQLE 695
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28571201 232 ELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETER--ERLLKDLEETRQAK 300
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleERFAAALGDAVERE 766
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
795-923 |
6.72e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.42 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 795 AETTNQLSECQERLTVKEAQLAEIQQQLqEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAEL 874
Cdd:COG1566 79 TDLQAALAQAEAQLAAAEAQLARLEAEL-GAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAAL 157
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 28571201 875 EKLQETLRVNEEQLLAKEEQLhAKESQLQSLESQLQGQLAADESQQLQQ 923
Cdd:COG1566 158 DAAQAQLEAAQAQLAQAQAGL-REEEELAAAQAQVAQAEAALAQAELNL 205
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
814-1173 |
6.79e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 814 QLAEIQQQLQEVNEERTRLQEQlltkeqESGLDSELAKRNQELEDQLLAKEQQ--LQLNQAELEKLQETLRVNE------ 885
Cdd:COG3096 300 QLAEEQYRLVEMARELEELSAR------ESDLEQDYQAASDHLNLVQTALRQQekIERYQEDLEELTERLEEQEevveea 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 886 -EQLLAKEEQLHAKESQLQSLESQLQG-QLAADESQ----QLQQTIDGLgqEKNELIKVLQQKHQENTQYYAEIQRLQpf 959
Cdd:COG3096 374 aEQLAEAEARLEAAEEEVDSLKSQLADyQQALDVQQtraiQYQQAVQAL--EKARALCGLPDLTPENAEDYLAAFRAK-- 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 960 EQQVKELVKE-REKLQDQVGFLK--EKSDILTTNLLTE-------QTNQRLLQQQQAESQEQQAstlrdLERLRAHLLEI 1029
Cdd:COG3096 450 EQQATEEVLElEQKLSVADAARRqfEKAYELVCKIAGEversqawQTARELLRRYRSQQALAQR-----LQQLRAQLAEL 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1030 EEL--HTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRE--- 1104
Cdd:COG3096 525 EQRlrQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApaw 604
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 1105 LKQQAALTNLQCAL-EQFQNdkdhdiemaTQRIRREMQAQLDRQGQLQLEmsglQQQLAEANQGLRAAAR 1173
Cdd:COG3096 605 LAAQDALERLREQSgEALAD---------SQEVTAAMQQLLEREREATVE----RDELAARKQALESQIE 661
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
168-767 |
6.86e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 6.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 168 ELEQLNEQLNVSLEELDSQHELAMRDVLEHKTQLAGQVASLKQLQADRLVEHELSNARQQKQLDELRQTSSAAKKQQ--- 244
Cdd:pfam15921 257 KIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELrea 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 245 --------EELQRRVEQQEAELIEMQDLLDKRRQDTAEL---IERVRVAETERERLLKDLEETRQAKEKKTSESSSNSSS 313
Cdd:pfam15921 337 krmyedkiEELEKQLVLANSELTEARTERDQFSQESGNLddqLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDH 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 314 TGKHSEDEFIVVRQADATGSGSASGSDRDPDADVTSPPSKEKLRDRLVSLESQ-----------ISELTLANTQLQDAql 382
Cdd:pfam15921 417 LRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQlestkemlrkvVEELTAKKMTLESS-- 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 383 ekQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTvqnqelklhaeaeqegHAQNLEEQLGDLREDNQRLRQE 462
Cdd:pfam15921 495 --ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ----------------HLKNEGDHLRNVQTECEALKLQ 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 463 LktsiaqAKFRQAIAEEKQEITDLDDADSEYG--TFELDKLRALLQAEIEDRldssfpqqKLE-RAWNALKDRWH-RLDL 538
Cdd:pfam15921 557 M------AEKDKVIEILRQQIENMTQLVGQHGrtAGAMQVEKAQLEKEINDR--------RLElQEFKILKDKKDaKIRE 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 539 VEQRLVDVqnqqlvsEHEKKTLEADISQYILQCDELMKNNDLLLNELdKYKRNKLETIEEHHEETIVQLEAQLEEA---- 614
Cdd:pfam15921 623 LEARVSDL-------ELEKVKLVNAGSERLRAVKDIKQERDQLLNEV-KTSRNELNSLSEDYEVLKRNFRNKSEEMettt 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 615 -RQKLELASLSSQQQMETHLISSPEKTPVDSELLAkmeqkeqeyLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQ 693
Cdd:pfam15921 695 nKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA---------MGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKH 765
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28571201 694 ADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQ-ADQEKLRELLQ 767
Cdd:pfam15921 766 FLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQrQEQESVRLKLQ 840
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
812-899 |
6.99e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 40.41 E-value: 6.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 812 EAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAK 891
Cdd:smart00435 276 EKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKL 355
|
....*...
gi 28571201 892 EEQLHAKE 899
Cdd:smart00435 356 EVQATDKE 363
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
606-983 |
8.40e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 606 QLEAQLEEARQKLELASLSSQQQmethlisspEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKL--LERNGE 683
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLES---------ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELetLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 684 QLTKQQQQNQADQKKL-EELSQLRETLQRRDEDLKEL----------EEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQ 752
Cdd:PRK02224 262 DLRETIAETEREREELaEEVRDLRERLEELEEERDDLlaeaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 753 NQLQADQEKLRELLQLQDKLEQQKELMEVD---QNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEER 829
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELESEleeAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 830 TRLQEQLLT-------------------------------------------KEQESGLDSELAKRNQELE--DQLLAKE 864
Cdd:PRK02224 422 DELREREAEleatlrtarerveeaealleagkcpecgqpvegsphvetieedRERVEELEAELEDLEEEVEevEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571201 865 QQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQG-QLAADESQQLQQTIDGLGQEKNELIKVLQQKH 943
Cdd:PRK02224 502 EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAElEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 28571201 944 QENTQyyaEIQRLqpfeQQVKELVKEREKLQDQVGFLKEK 983
Cdd:PRK02224 582 AELKE---RIESL----ERIRTLLAAIADAEDEIERLREK 614
|
|
| |
