|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
455-1005 |
4.63e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 103.09 E-value: 4.63e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 455 ELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLS 534
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 535 AVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKElmevDQNQQITIIKKELAETTNQLSEC 614
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA----EAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 615 QERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVN 694
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 695 EEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVlqqkhqENTQYYAEIQRLQPFEQQVk 774
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV------EAAYEAALEAALAAALQNI- 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 775 eLVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQA--STLRDLERLRAHLLEIEELHTQETVELQR 852
Cdd:COG1196 552 -VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 853 DLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALEQFQ 932
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28571203 933 NDKDHDIEMATQRIRREMQAQLDRQGQLQLEMSGLQQQLAEANQGLRAAARLSDQleagQQTIAVLRDEVESL 1005
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL----ERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
19-783 |
1.36e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 1.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 19 KQLQADRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERER 98
Cdd:TIGR02168 227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 99 LLKDLEETRQAKEKKTSESSSNSSstgKHSEDEFIVVRQADATGSGSASgsdrdpdadvtsppsKEKLRDRLVSLESQIS 178
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELES---KLDELAEELAELEEKLEELKEE---------------LESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 179 ELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQ 258
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 259 LGDLREDNQRLRQELKTSiaqakfRQAIAEEKQEITDLDDadseygtfELDKLRALLQAEIEDRLDSSFPQQKLERAWNA 338
Cdd:TIGR02168 449 LEELQEELERLEEALEEL------REELEEAEQALDAAER--------ELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 339 LKDRWHRLDLVEQrLVDVQN--------------QQLVSEHEKKTLEAdisQYILQCDELMKNNDLLLNELDKYKRNKLE 404
Cdd:TIGR02168 515 QSGLSGILGVLSE-LISVDEgyeaaieaalggrlQAVVVENLNAAKKA---IAFLKQNELGRVTFLPLDSIKGTEIQGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 405 TIEEHHEETIVQLEAQLEEARQKLE--LASLSSQQQMETHLISSPEktpvdselLAKMEQKEQEYLQLQEQLAF-----A 477
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLVKFDPKLRkaLSYLLGGVLVVDDLDNALE--------LAKKLRPGYRIVTLDGDLVRpggviT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 478 KTELDKRNKLLERNGEqltkQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQmkisQDQHKLQ 557
Cdd:TIGR02168 663 GGSAKTNSSILERRRE----IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ----ISALRKD 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 558 LANLQNQLQADQEKLRELLQLQDKLEQQKELmevdQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNE 637
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEE----LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 638 E----RTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQ 713
Cdd:TIGR02168 811 EltllNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 714 SLESQLqgqlaadesQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKL 783
Cdd:TIGR02168 891 LLRSEL---------EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
472-791 |
1.40e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 472 EQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRetLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQ 551
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 552 ---DQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELmevdQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEI 628
Cdd:TIGR02168 267 eklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI----LRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 629 QQQLQEVNEERTRLQEQLltkeqesgldSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAK 708
Cdd:TIGR02168 343 EEKLEELKEELESLEAEL----------EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 709 ESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVG 788
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
...
gi 28571203 789 FLK 791
Cdd:TIGR02168 493 SLE 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
163-747 |
2.39e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 2.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 163 KEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKL 242
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 243 HAEAEQEghaqnLEEQLGDLREDNQRLRQELKTsiAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDR 322
Cdd:COG1196 335 LEEELEE-----LEEELEEAEEELEEAEAELAE--AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 323 LDSSFpQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNK 402
Cdd:COG1196 408 AEEAL-LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 403 LETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELD 482
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 483 KRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLqrRDEDLKELEEQLSAVRQDLDEKSIQmkisqdqhKLQLANLQ 562
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL--VASDLREADARYYVLGDTLLGRTLV--------AARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 563 NQLQADQEKLRELLQLQDKLEQQKELmevdqnqqitiikkELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRL 642
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSL--------------TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 643 QEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLhakESQLQSLESQLQG- 721
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL---ERELERLEREIEAl 779
|
570 580 590
....*....|....*....|....*....|
gi 28571203 722 ----QLAADESQQLQQTIDGLGQEKNELIK 747
Cdd:COG1196 780 gpvnLLAIEEYEELEERYDFLSEQREDLEE 809
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
165-783 |
3.01e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 3.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 165 KLRDRLVSLESQISELTLANTQLQDAQLEKQlsINMLGEQLVELEKRLRLSEAEKEQLQVNLQ-LRLQQLTVQNQELKLH 243
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAE--LEELEAELEELEAELAELEAELEELRLELEeLELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 244 AEAEQEGHAQNLEEQLgdlREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDDAdseygtfELDKLRALLQAEIEDRL 323
Cdd:COG1196 295 AELARLEQDIARLEER---RRELEERLEELEEELAELEEELEELEEELEELEEELE-------EAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 324 DSsfpQQKLERAWNALKDRWHRLdlvEQRLVDVQNQQLVSEHEKKTLEADISQyilqcdelmknndlLLNELDKYKRNKL 403
Cdd:COG1196 365 EA---LLEAEAELAEAEEELEEL---AEELLEALRAAAELAAQLEELEEAEEA--------------LLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 404 ETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQmethlisspektpvdsELLAKMEQKEQEYLQLQEQLAFAKTELDK 483
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE----------------ALLELLAELLEEAALLEAALAELLEELAE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 484 RnKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQN 563
Cdd:COG1196 489 A-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 564 QLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQ 643
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 644 EQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQL 723
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 724 AADESQQLQQTIDGLGQEKNELIKVLQqkhqentqYYAEIQRLQPFEQQVKELVKEREKL 783
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALE--------ELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
9-634 |
3.36e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 3.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 9 TQLAGQVASLKQlQADRLVEH-ELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELiemqdlldkrrqdtAELIE 87
Cdd:COG1196 196 GELERQLEPLER-QAEKAERYrELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL--------------EELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 88 RVRVAETERERLLKDLEETRQAKEKKtsesssnssstgkhSEDEFIVVRQADATGSGSASGSDRdpdadvtsppsKEKLR 167
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEA--------------QAEEYELLAELARLEQDIARLEER-----------RRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 168 DRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQEL--KLHAE 245
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELleALRAA 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 246 AEQEGHAQNLEEQLGDLREDNQRLRQELKTsiAQAKFRQAIAEEKQEITDLDDADSeygtfELDKLRALLQAEIEDRLDS 325
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEE--LEEALAELEEEEEEEEEALEEAAE-----EEAELEEEEEALLELLAEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 326 SFPQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLET 405
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 406 IEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRN 485
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 486 KL-LERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQ 564
Cdd:COG1196 629 AArLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 565 LQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQE 634
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
510-787 |
1.01e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 510 EELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLqLANLQNQLQADQEKLRELL-QLQDKLEQQKEL 588
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE-IEKEIEQLEQEEEKLKERLeELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 589 MEvDQNQQITIIKKELAETTNQLSECQERLTVKEAQLA-----EIQQQLQEVNEERTRLQEQL-----------LTKEQE 652
Cdd:TIGR02169 753 IE-NVKSELKELEARIEELEEDLHKLEEALNDLEARLShsripEIQAELSKLEEEVSRIEARLreieqklnrltLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 653 SGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQgqlaadESQQLQ 732
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR------ELERKI 905
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 28571203 733 QTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQV 787
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAEL 960
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
399-907 |
4.19e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 4.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 399 KRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAK 478
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 479 TELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQL 558
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 559 ANLQNQLQADQEKLRELLQLQDKLEQQKELmEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEE 638
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEE-EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 639 RTRLQEQLLTKEQ-----ESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETL-------RVNEEQLLAKEEQLH 706
Cdd:COG1196 486 LAEAAARLLLLLEaeadyEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalqnIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 707 AKESQL-----QSLESQLQGQLAADESQQLQQ-----TIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKEL 776
Cdd:COG1196 566 LKAAKAgratfLPLDKIRARAALAAALARGAIgaavdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 777 VKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQRDLEE 856
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 28571203 857 SRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKL 907
Cdd:COG1196 726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
6-542 |
5.83e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 5.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 6 EHKTQLAGQVASLKQLQAdRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAEL 85
Cdd:COG1196 250 ELEAELEELEAELAELEA-ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 86 IERVRVAETERERLLKDLEETRQAKEKKTSESSSNSSSTGKHSEDEFIVVRQADATGSGSASGSDRdpdadvtsppsKEK 165
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA-----------AAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 166 LRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAE 245
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 246 AEQEGHAQNLE-EQLGDLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLD 324
Cdd:COG1196 478 ALAELLEELAEaAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 325 ------SSFPQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKY 398
Cdd:COG1196 558 vaaaaiEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 399 KRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEktpVDSELLAKMEQKEQEYLQLQEQLAFAK 478
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER---LAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28571203 479 TELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDE 542
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
371-1017 |
1.49e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 371 EADISQYILQCDELMKNNDLLLNELDKYKRnkletIEEHHEETIVQLEAQLEEARqkLELASLSSQQQMETHLISspekt 450
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEE-----ELEELTAELQELEEKLEELR--LEVSELEEEIEELQKELY----- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 451 pvdsELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELE 530
Cdd:TIGR02168 292 ----ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 531 EQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKE-LMEVDQNQQITIIKKELAETTN 609
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEeLLKKLEEAELKELQAELEELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 610 QLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQE 689
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 690 TLRVNEEQLLAKEEQLHA---------KESQLQSLESQLQ---------------GQLAADESQQLQQTIDGLGQEKNEL 745
Cdd:TIGR02168 528 LISVDEGYEAAIEAALGGrlqavvvenLNAAKKAIAFLKQnelgrvtflpldsikGTEIQGNDREILKNIEGFLGVAKDL 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 746 IKV------------------------LQQKHQENTQY-------------YAEIQRLQPFEQQVKELVKEREKLQDQVG 788
Cdd:TIGR02168 608 VKFdpklrkalsyllggvlvvddldnaLELAKKLRPGYrivtldgdlvrpgGVITGGSAKTNSSILERRREIEELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 789 FLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIE---ELHTQETVELQRDLEESRSRQAILE 865
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEaevEQLEERIAQLSKELTELEAEIEELE 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 866 QQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDrelkQQAALTNLQCALEQFQNDKDHDIEMATQR 945
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL----LNEEAANLRERLESLERRIAATERRLEDL 843
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571203 946 IRREMQAQLDRQgQLQLEMSGLQQQLAEANQGLraaARLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLS 1017
Cdd:TIGR02168 844 EEQIEELSEDIE-SLAAEIEELEELIEELESEL---EALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
5-644 |
1.91e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 5 LEHKTQLAGQVASLKQLQADRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAE 84
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 85 LIERVRVAETERERLLKDLEETRQAKEKKTSESSSNSSStgkhsedefivvrqadatgsgsasgsdrdpdadvtsppsKE 164
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEE---------------------------------------LE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 165 KLRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHA 244
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 245 EAEQEGHAQNLEEQLGDLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDDAdseygtfeldKLRALLQAEIEDRlD 324
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA----------AARLLLLLEAEAD-Y 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 325 SSFPQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEhekktLEADISQYILQCDELMKNNDLLLNELDKYKRNKLE 404
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA-----LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 405 TIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKtpVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKR 484
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL--GRTLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 485 NKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQ 564
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 565 LQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAE--TTNQLS-----ECQERLTvkeaqlaEIQQQLQEVNE 637
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgPVNLLAieeyeELEERYD-------FLSEQREDLEE 809
|
....*..
gi 28571203 638 ERTRLQE 644
Cdd:COG1196 810 ARETLEE 816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
168-976 |
3.11e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 3.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 168 DRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAE 247
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 248 QegHAQNLEEQLGDLREDNQRLRQELKTSIAQAKfrQAIAEEKQEITDLDDadseygtfELDKLRALLQAeiedrldssf 327
Cdd:TIGR02168 312 A--NLERQLEELEAQLEELESKLDELAEELAELE--EKLEELKEELESLEA--------ELEELEAELEE---------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 328 pqqkLERAWNALKDRWHRLdlvEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIE 407
Cdd:TIGR02168 370 ----LESRLEELEEQLETL---RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 408 EHHEETIVQLEAQLEEARQKLELASLSSQQqMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKL 487
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEE-AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 488 LERNGEQLTKQQQQNQADQKKLEELSQLRETlqrrdEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQA 567
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIEAALGGRLQAVVV-----ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 568 DQEKLRELLQLQDKLEQQKELMEVDQNQqiTIIKKELAETTNQLSEcqerltvkeaqlaeiqqqlqevneerTRLQEQLL 647
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLGG--VLVVDDLDNALELAKK--------------------------LRPGYRIV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 648 TkeqesgLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQL-----QGQ 722
Cdd:TIGR02168 649 T------LDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELeqlrkELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 723 LAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEI----QRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILT 798
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIeeleERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 799 TNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQRdLEESRSRQAILEQQVSKSSTAYTSA 878
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-LAAEIEELEELIEELESELEALLNE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 879 SIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALEQFQNDKDHDIEMATQRIRREMQAQLDRQG 958
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961
|
810
....*....|....*...
gi 28571203 959 QLQLEMSGLQQQLAEANQ 976
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
574-860 |
2.83e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 2.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 574 ELLQLQDKLEQQKELMEVDQnQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQE- 652
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQ-SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEi 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 653 SGLDSELAKRNQELEDQLLAKEQ-QLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQ-----GQLAAD 726
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNrltleKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 727 ESQQLQQTIDGLGQEKNEL---IKVLQQKHQENTQYYAEIQ-RLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLL 802
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIekeIENLNGKKEELEEELEELEaALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 28571203 803 TEQTNQRLLQQQQAESQEQqastLRDLERLRAHLLEI-EELHTQETVELQRDLEESRSR 860
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEE----LSEIEDPKGEDEEIpEEELSLEDVQAELQRVEEEIR 968
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
550-775 |
2.98e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 2.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 550 SQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKElmevDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQ 629
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 630 QQLQevnEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKE 709
Cdd:COG4942 97 AELE---AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28571203 710 SQLQSLESQLQGQLAADESQ--QLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKE 775
Cdd:COG4942 174 AELEALLAELEEERAALEALkaERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
8-731 |
6.81e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 6.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 8 KTQLAGQVASLKQLQADRLVEhELSNARQQKQLDELRQTSSAAKKQQEelQRRVEQqEAELIEMQDLLDKRRQDTAELIE 87
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAE-EARKAEDAKKAEAVKKAEEAKKDAEE--AKKAEE-ERNNEEIRKFEEARMAHFARRQA 1270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 88 RVRVAETERERLLKDLEETRQAKEKKTSESSSNSSSTGKHSEDEfivvRQADATGSGSASGSDRDPDADVTSPPSKEKLR 167
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA----KKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 168 DRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKeqlqvnlqlRLQQLTVQNQELKLHAEAE 247
Cdd:PTZ00121 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK---------KAEEDKKKADELKKAAAAK 1417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 248 QEghAQNLEEQLGDLRE-DNQRLRQELKTSIAQAKFRqaiAEEKQEITDLDDADSEYGTFELDKLRALLQAEIED-RLDS 325
Cdd:PTZ00121 1418 KK--ADEAKKKAEEKKKaDEAKKKAEEAKKADEAKKK---AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEaKKKA 1492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 326 SFPQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLL-LNELDKYKRNKLE 404
Cdd:PTZ00121 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKkAEEKKKAEEAKKA 1572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 405 TIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKR 484
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 485 NKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQlsavrqdlDEKSIQMKISQDQHKLQLANLQNQ 564
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE--------AKKAEELKKKEAEEKKKAEELKKA 1724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 565 LQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQE 644
Cdd:PTZ00121 1725 EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 645 QLLTKEQESGLDSEL----AKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLqsLESQLQ 720
Cdd:PTZ00121 1805 DNFANIIEGGKEGNLvindSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDL--KEDDEE 1882
|
730
....*....|.
gi 28571203 721 GQLAADESQQL 731
Cdd:PTZ00121 1883 EIEEADEIEKI 1893
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
27-777 |
1.23e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 27 VEHELSNARQQKQLDELRQTSSAakKQQEELQRRVEQQEAEliEMQDLLDKRRQDTAELIERVRVAETERE-RLLKDLEE 105
Cdd:PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEA--RKAEDARKAEEARKAE--DAKRVEIARKAEDARKAEEARKAEDAKKaEAARKAEE 1186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 106 TRQAKEKKTSESSSNSSSTGKHSEDEFI-VVRQADATGSGSASGSDRDPDADVTSPPSKEKLRDRLVSLESQISELTLAN 184
Cdd:PTZ00121 1187 VRKAEELRKAEDARKAEAARKAEEERKAeEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 185 TQLQDAQLEKQLSinmlGEQLVELEKRLRLSEAEKEQlqvnLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLRE 264
Cdd:PTZ00121 1267 RRQAAIKAEEARK----ADELKKAEEKKKADEAKKAE----EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 265 DNQRLRQELKTSIAQAKFRQA-IAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSFPQQKLERawnaLKDRW 343
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE----LKKAA 1414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 344 HRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEE 423
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 424 ARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEqlafaktELDKRNKLleRNGEQLTKQQQQNQ 503
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE-------EKKKADEL--KKAEELKKAEEKKK 1565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 504 ADQKKLEElsQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLE 583
Cdd:PTZ00121 1566 AEEAKKAE--EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 584 QQKELME-VDQNQQITIIKK-ELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLqEQLLTKEQESGLDSELAK 661
Cdd:PTZ00121 1644 EEKKKAEeLKKAEEENKIKAaEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA-EELKKKEAEEKKKAEELK 1722
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 662 RNQELEDqllAKEQQLQLNQAELEKLQETLRVNEE-----QLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQqtID 736
Cdd:PTZ00121 1723 KAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEekkkiAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME--VD 1797
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 28571203 737 GLGQEKNELIKVLQQKHQENTQYYAEIQRLqpFEQQVKELV 777
Cdd:PTZ00121 1798 KKIKDIFDNFANIIEGGKEGNLVINDSKEM--EDSAIKEVA 1836
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
600-765 |
2.39e-08 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 58.25 E-value: 2.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 600 IKKELAETTNQLSECQERLTVKEAQL---AEIQQQLQEVNEERTRLQEQLltkeqesglDSELAKRNQEL---EDQLLAK 673
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAKRILEEAKKeaeAIKKEALLEAKEEIHKLRNEF---------EKELRERRNELqklEKRLLQK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 674 EQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQL------AADE--SQQLQQTIDGLGQEKNEL 745
Cdd:PRK12704 95 EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELerisglTAEEakEILLEKVEEEARHEAAVL 174
|
170 180
....*....|....*....|....*.
gi 28571203 746 IKVLQQKHQENTQYYAE------IQR 765
Cdd:PRK12704 175 IKEIEEEAKEEADKKAKeilaqaIQR 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
556-787 |
2.58e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 2.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 556 LQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEvDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEV 635
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELA-ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 636 NEERTRLQEQLLTKEQesgldsELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSL 715
Cdd:COG4942 89 EKEIAELRAELEAQKE------ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571203 716 ESQLqgQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQpfeQQVKELVKEREKLQDQV 787
Cdd:COG4942 163 AALR--AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA---AELAELQQEAEELEALI 229
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
416-786 |
4.85e-08 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 57.61 E-value: 4.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 416 QLEAQLEEA--RQKLELASLSSQQQMETHLisspektpvdsELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGE 493
Cdd:PRK11281 40 DVQAQLDALnkQKLLEAEDKLVQQDLEQTL-----------ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 494 QLTKQQQQNQADQ--KKLEE-LSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQdQHKLQLANLQNQLQADQE 570
Cdd:PRK11281 109 DNDEETRETLSTLslRQLESrLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANS-QRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 571 KLREllQLQDKLEQQKELMevdqNQQITIIKKELAETTNQLSECQER---LTVKEAQLAEIQQQLQEV-NEERTRLQEQL 646
Cdd:PRK11281 188 ALRP--SQRVLLQAEQALL----NAQNDLQRKSLEGNTQLQDLLQKQrdyLTARIQRLEHQLQLLQEAiNSKRLTLSEKT 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 647 LTKEQESgldselAKRNQELEDQLLAKEQQ--LQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQlQSLESQ---LQG 721
Cdd:PRK11281 262 VQEAQSQ------DEAARIQANPLVAQELEinLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSE-RNIKEQisvLKG 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 722 QLAADE--SQQLQ-----QTIDGLGQE----KNELIKVLQQKHQ--ENTQYYAEIQRLQPFE------QQVKELVKEREK 782
Cdd:PRK11281 335 SLLLSRilYQQQQalpsaDLIEGLADRiadlRLEQFEINQQRDAlfQPDAYIDKLEAGHKSEvtdevrDALLQLLDERRE 414
|
....
gi 28571203 783 LQDQ 786
Cdd:PRK11281 415 LLDQ 418
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
509-888 |
5.01e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 57.66 E-value: 5.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 509 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLD-----EKSIQMKISQDQHKLQLAN----LQNQLQADQEklrELLQLQ 579
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAelneaESDLEQDYQAASDHLNLVQtalrQQEKIERYQA---DLEELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 580 DKLEQQKELMEVDQNQQI------TIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQES 653
Cdd:PRK04863 362 ERLEEQNEVVEEADEQQEenearaEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 654 GLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRV----------NEEQLLAKEEQLHAKESQLQSL-ESQLQGQ 722
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLvrkiagevsrSEAWDVARELLRRLREQRHLAEqLQQLRMR 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 723 LAADESQQLQQtidglgQEKNELIKVLQQKHQENTQYYAEIQRLQP--------FEQQVKELVKEREKLQDQVGFLKEKS 794
Cdd:PRK04863 522 LSELEQRLRQQ------QRAERLLAEFCKRLGKNLDDEDELEQLQEelearlesLSESVSEARERRMALRQQLEQLQARI 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 795 DILTTNLLTEQTNQRLLqQQQAESQEQQASTLRDLERLRAHLLEIEelhtqetVELQRDLEESRSRQAILEQQVSKSSTA 874
Cdd:PRK04863 596 QRLAARAPAWLAAQDAL-ARLREQSGEEFEDSQDVTEYMQQLLERE-------RELTVERDELAARKQALDEEIERLSQP 667
|
410
....*....|....
gi 28571203 875 YTSASIRANQQAET 888
Cdd:PRK04863 668 GGSEDPRLNALAER 681
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
331-858 |
7.67e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 7.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 331 KLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHH 410
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 411 EETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQE---QLAFAKTELDKRNKL 487
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfyeEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 488 LERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSiqmKISQDQHKLQLANLQNQLQA 567
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE---RLKKRLTGLTPEKLEKELEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 568 DQEKLRELLQLQDKLEQQKELMEVDQNQQITIIkKELAETTNQLSECQERLTVKE---------AQLAEIQQQLQEVNEE 638
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAI-EELKKAKGKCPVCGRELTEEHrkelleeytAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 639 RTRLQEQLLTKEQESGLDSELAKrNQELEDQLLAKEQQLQ-LNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLEs 717
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELIK-LKELAEQLKELEEKLKkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE- 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 718 QLQGQLAADES------QQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQvgfLK 791
Cdd:PRK03918 553 ELKKKLAELEKkldeleEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE---LD 629
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28571203 792 EKSDILttnlltEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQRdLEESR 858
Cdd:PRK03918 630 KAFEEL------AETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEE-LEKRR 689
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
510-718 |
1.88e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 1.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 510 EELSQLRETLQRRDEDLKELEEQLSAVRQ--DLDEKSIQMKISQDQHKLQLANLQnqLQADQEKLRELLQLQDKLEQQKE 587
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEPirELAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 588 lmevDQNQQITIIKKELAETTNQLSECQE--------RLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSEL 659
Cdd:COG4913 306 ----RLEAELERLEARLDALREELDELEAqirgnggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE 381
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 28571203 660 AKRNQELEDQLLAKEQQlqlnqaELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQ 718
Cdd:COG4913 382 FAALRAEAAALLEALEE------ELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
469-708 |
2.36e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 469 QLQEQLAFAKTELDKRNKLLERNGEQltkqqqqnqaDQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKsiqmk 548
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKE----------EKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 549 isqdqhKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEI 628
Cdd:COG4942 89 ------EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 629 QQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAK 708
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
510-867 |
3.40e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 54.92 E-value: 3.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 510 EELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQM--KISQDQHKLQLANLQNQLQADQEKLRE----LLQLQDKLE 583
Cdd:PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETlsTLSLRQLESRLAQTLDQLQNAQNDLAEynsqLVSLQTQPE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 584 Q-QKELME-VDQNQQITIIKKELAETTNQLSEcqERLTVKEAQLA------EIQQQLQEVNeerTRLQEqLLTKEQEsgl 655
Cdd:PRK11281 160 RaQAALYAnSQRLQQIRNLLKGGKVGGKALRP--SQRVLLQAEQAllnaqnDLQRKSLEGN---TQLQD-LLQKQRD--- 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 656 dsELAKRNQELEDQLLA-----KEQQLQLNQ---AELEKLQETLRVNEEQLLAKEEQLHAKESQ--LQSLES-------- 717
Cdd:PRK11281 231 --YLTARIQRLEHQLQLlqeaiNSKRLTLSEktvQEAQSQDEAARIQANPLVAQELEINLQLSQrlLKATEKlntltqqn 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 718 -QLQGQLaaDESQQLQQTIDglgqeknELIKVLQ---------QKHQENTQYYAEIQ---------RLQPFEqqvkeLVK 778
Cdd:PRK11281 309 lRVKNWL--DRLTQSERNIK-------EQISVLKgslllsrilYQQQQALPSADLIEgladriadlRLEQFE-----INQ 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 779 EREKLQDQVGFLkeksdilttnllteqtnQRLLQQQQAESQEQQASTLRDLERLRAHLLE--IEELHTQ--ETVELQRD- 853
Cdd:PRK11281 375 QRDALFQPDAYI-----------------DKLEAGHKSEVTDEVRDALLQLLDERRELLDqlNKQLNNQlnLAINLQLNq 437
|
410
....*....|....*..
gi 28571203 854 ---LEESRSRQAILEQQ 867
Cdd:PRK11281 438 qqlLSVSDSLQSTLTQQ 454
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
509-888 |
4.92e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.57 E-value: 4.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 509 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKL---QLANLQNQLQAdQEKLR----ELLQLQDK 581
Cdd:COG3096 284 SERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAasdHLNLVQTALRQ-QEKIEryqeDLEELTER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 582 LEQQKELMEVDQNQQI------TIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGL 655
Cdd:COG3096 363 LEEQEEVVEEAAEQLAeaearlEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 656 DSELAKRNQELEDQLLAKEQQLQLNQA---------EL--------------EKLQETLRVNEEQ--LLAKEEQLHAKES 710
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAarrqfekayELvckiageversqawQTARELLRRYRSQqaLAQRLQQLRAQLA 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 711 QLQSLESQLQG--QLAADESQQLQQTIDGLgQEKNELIKVLQQKHQENTQYYAE-IQRLQPFEQQVKELVKEREKLQDQV 787
Cdd:COG3096 523 ELEQRLRQQQNaeRLLEEFCQRIGQQLDAA-EELEELLAELEAQLEELEEQAAEaVEQRSELRQQLEQLRARIKELAARA 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 788 GFLKEKSDILTTnlLTEQTNQRLlqqqqaesqeqqaSTLRDLERLRAHLLEIEelhtqetVELQRDLEESRSRQAILEQQ 867
Cdd:COG3096 602 PAWLAAQDALER--LREQSGEAL-------------ADSQEVTAAMQQLLERE-------REATVERDELAARKQALESQ 659
|
410 420
....*....|....*....|.
gi 28571203 868 VSKSSTAYTSASIRANQQAET 888
Cdd:COG3096 660 IERLSQPGGAEDPRLLALAER 680
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
483-935 |
8.84e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 8.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 483 KRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQD-----QHKLQ 557
Cdd:COG4717 61 PQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqeleALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 558 LANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNE 637
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 638 ERTRLQEQLlTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSles 717
Cdd:COG4717 221 ELEELEEEL-EQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLARE--- 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 718 QLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAE-IQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDI 796
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLElLDRIEELQELLREAEELEEELQLEELEQEIAALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 797 LTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQRDLEESRSRQAILEQQVSKSSTAYt 876
Cdd:COG4717 377 AEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREEL- 455
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 28571203 877 sASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALEQFQNDK 935
Cdd:COG4717 456 -AELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
455-677 |
9.17e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 9.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 455 ELLAKMEQKEQEYLQLQEQLAFAKTELDKRNklLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLS 534
Cdd:COG4913 252 ELLEPIRELAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 535 AVRQDLDEKSIqmkisqDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSEC 614
Cdd:COG4913 330 AQIRGNGGDRL------EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28571203 615 QERLTVKEAQLAEIQQQLQEVNEERTRLqeqlltKEQESGLDSELAKRNQELEDQLLAKEQQL 677
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAEIASL------ERRKSNIPARLLALRDALAEALGLDEAEL 460
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
363-860 |
9.24e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 9.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 363 SEHEKKTLEADISQYILQCDELMKNNDlllnelDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASlSSQQQMETH 442
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK-AEAEAAADE 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 443 LISSPEKTPVDsELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADqkklEELSQLRETLQRR 522
Cdd:PTZ00121 1359 AEAAEEKAEAA-EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA----DEAKKKAEEKKKA 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 523 DEDLKELEEQLSAvrQDLDEKSIQMKISQD-QHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIK 601
Cdd:PTZ00121 1434 DEAKKKAEEAKKA--DEAKKKAEEAKKAEEaKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 602 KELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNE-ERTRLQEQLltKEQESGLDSELAKRNQELEDQLLAKEQQLQln 680
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKaDELKKAEEL--KKAEEKKKAEEAKKAEEDKNMALRKAEEAK-- 1587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 681 QAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLEsqlQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYY 760
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE---ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 761 AEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDilttnllteqtnqrlLQQQQAESQEQQASTLRDLERLRahllEIE 840
Cdd:PTZ00121 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE---------------EAKKAEELKKKEAEEKKKAEELK----KAE 1725
|
490 500
....*....|....*....|
gi 28571203 841 ELHTQETVELQRDLEESRSR 860
Cdd:PTZ00121 1726 EENKIKAEEAKKEAEEDKKK 1745
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
615-787 |
9.40e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 9.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 615 QERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRN------QELEDQLLAKEQQLQ---LNQAELE 685
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELErldASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 686 KLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGqlAADESQQLQQTIDGLGQEKN-ELIKVLQQKHQENTQYYAEIQ 764
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ--AEEELDELQDRLEAAEDLARlELRALLEERFAAALGDAVERE 766
|
170 180
....*....|....*....|...
gi 28571203 765 RLQPFEQQVKELVKEREKLQDQV 787
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEEL 789
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
56-782 |
1.00e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 56 ELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRV--------------------------------AETERERLLKDL 103
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKlkeqakkaleyyqlkekleleeeyllyldylkLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 104 EETRQAKEKKTSESSSNSSSTGKHSEDEFIVVRQADATGSGSASGSDRDPDADVtspPSKEKLRDRLVSLESQISELTLA 183
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK---SELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 184 NTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAE---AEQEGHAQNLEEQLG 260
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESErlsSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 261 DLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSfpqqKLERAWNALK 340
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK----KSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 341 DRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQ 420
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 421 LEEARQKLELASLSSQQQMETHLISSPEKtpVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQ 500
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKL--KLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 501 QNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKlqLANLQNQLQADQEKLRELLQLQD 580
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAK--EEILRRQLEIKKKEQREKEELKK 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 581 KLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQES-GLDSEL 659
Cdd:pfam02463 715 LKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKvEEEKEE 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 660 AKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLG 739
Cdd:pfam02463 795 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLL 874
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 28571203 740 QEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREK 782
Cdd:pfam02463 875 KEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKEN 917
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
602-762 |
1.12e-06 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 52.28 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 602 KELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLltkEQESGLDSELAKRNQELEDQLLAKEQQLQLNQ 681
Cdd:PRK09039 60 SQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALL---AELAGAGAAAEGRAGELAQELDSEKQVSARAL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 682 AELEKLQetlrvneeqllakeEQLHAKESQLQSLESQLQGQLAADESQQLQqtIDGLGQEKNeliKVLQQKHQENTQYYA 761
Cdd:PRK09039 137 AQVELLN--------------QQIAALRRQLAALEAALDASEKRDRESQAK--IADLGRRLN---VALAQRVQELNRYRS 197
|
.
gi 28571203 762 E 762
Cdd:PRK09039 198 E 198
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
19-748 |
1.38e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.05 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 19 KQLQADRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERvrvaeterer 98
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL---------- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 99 llKDLEETRQAKEKKTSESSSNSSSTGKHSEDEFIVVRQADATGSGSASGSDRDPDADVTSPPSKEKLRDRLVSLESQIS 178
Cdd:pfam02463 393 --KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 179 ELTLANTQLQDAQLEKQLSIN-MLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEE 257
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSrQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 258 QLGDLREDNQRLRQELKTSIAQA-KFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEIEDRLDSSFPQQKLERAW 336
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELpLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILK 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 337 NALKDRWHRLDLVEQRLVDVQNQQ---LVSEHEKKTLEADISQYILQCDELMKNNDLLLNELDKYKRNKLETIEEHHEET 413
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLeegLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 414 IVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGE 493
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEE 790
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 494 QLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLR 573
Cdd:pfam02463 791 EKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 574 ELLQLQDKLEQQKELMEvdqnqqitiIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQES 653
Cdd:pfam02463 871 ELLLKEEELEEQKLKDE---------LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELL 941
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 654 GLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQ 733
Cdd:pfam02463 942 LEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
730
....*....|....*
gi 28571203 734 TIDGLGQEKNELIKV 748
Cdd:pfam02463 1022 FLELFVSINKGWNKV 1036
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
510-746 |
2.39e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 510 EELSQLRETLQRRDEDLKELEEQLSAVRQDLdeKSIQMKISQDQHKLQlaNLQNQLQADQEKLRELLQLQDKLEQQKELM 589
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQL--AALERRIAALARRIR--ALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 590 EVDQNQQITIIKKELAETTNQLSECQERLtvkeAQLAEIQQQLQEVNEERTRLQEQL-LTKEQESGLDSELAKRNQELED 668
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDF----LDAVRRLQYLKYLAPARREQAEELrADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28571203 669 QLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELI 746
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
365-650 |
2.88e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 365 HEKKTLEADISQYILQCDELMKNNDLLLNELDKY-KRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQqmethl 443
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELeKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI------ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 444 isspektpvdSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRR- 522
Cdd:TIGR02169 304 ----------ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEl 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 523 ---DEDLKELEEQLSAVRQDLDeksiQMKISQDQHKLQLANLQNQLQADQEKLREL-LQLQDKLEQQKELMEVdqnqqIT 598
Cdd:TIGR02169 374 eevDKEFAETRDELKDYREKLE----KLKREINELKRELDRLQEELQRLSEELADLnAAIAGIEAKINELEEE-----KE 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 28571203 599 IIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKE 650
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
572-874 |
3.47e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 3.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 572 LRELLQLQDKLEQQKELMEVDQ--NQQITIIKKELAETTN---QLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQL 646
Cdd:PRK03918 151 VRQILGLDDYENAYKNLGEVIKeiKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 647 LTKEQESGLDSELAKRNQELEdqllakeqqlqlnqAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESqLQGQlaAD 726
Cdd:PRK03918 231 KELEELKEEIEELEKELESLE--------------GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEK--AE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 727 ESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKsdilttnlltEQT 806
Cdd:PRK03918 294 EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER----------HEL 363
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28571203 807 NQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTqetvELQRDLEESRSRQAILEQQVSKSSTA 874
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE----EIEEEISKITARIGELKKEIKELKKA 427
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
520-1001 |
3.49e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 3.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 520 QRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKlQLANLQNQLQADQEKLRELLQLQDKLEQQKELME-VDQNQQIT 598
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREELEKLEkLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 599 IIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLltkeqesgldselakrNQELEDQLLAKEQQLQ 678
Cdd:COG4717 132 QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEL----------------EELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 679 LNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEknELIKVLQQKHQENTQ 758
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL--LALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 759 YYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRL--LQQQQAESQEQQASTLRDLERLRAHL 836
Cdd:COG4717 274 TIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLaaLGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 837 LEIEELHTQETVELQRDleesrSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELK 916
Cdd:COG4717 354 REAEELEEELQLEELEQ-----EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 917 Q-QAALTNLQCALEQFQNDKDhDIEMATQRIRREMQaQLDRQGQLQLEMSGLQQQLAEANQGLRAAARLSDQLEAGQQTI 995
Cdd:COG4717 429 ElEEELEELEEELEELEEELE-ELREELAELEAELE-QLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAR 506
|
....*.
gi 28571203 996 AVLRDE 1001
Cdd:COG4717 507 EEYREE 512
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
391-639 |
4.45e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 391 LLNEL-DKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTpvDSELLAKMEQKEQEYLQ 469
Cdd:COG3206 153 VANALaEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEE--AKLLLQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 470 LQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLE------ELSQLRETLQRRDEDLKELEEQLSAVRQDLdek 543
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaeleaELAELSARYTPNHPDVIALRAQIAALRAQL--- 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 544 siqmkisQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQkelmevdqnqqitiiKKELAETTNQLSECQERLTVKEA 623
Cdd:COG3206 308 -------QQEAQRILASLEAELEALQAREASLQAQLAQLEAR---------------LAELPELEAELRRLEREVEVARE 365
|
250
....*....|....*.
gi 28571203 624 QLAEIQQQLQEVNEER 639
Cdd:COG3206 366 LYESLLQRLEEARLAE 381
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
30-317 |
4.52e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 4.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 30 ELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQA 109
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 110 KEKKTSESSSNSSSTGKHSE--DEFIVVRQADATGSGSASGSDRDPDADVTSPPSK-EKLRDRLVSLESQISELTLANTQ 186
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAqiEQLKEELKALREALDELRAELTLLNEEAANLRERlESLERRIAATERRLEDLEEQIEE 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 187 LQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEA--EQEGHAQNLEEQLGDLRE 264
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKrsELRRELEELREKLAQLEL 929
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 28571203 265 DNQRLRQELKTSIAQAKFRQAI-AEEKQEITDLDDADSEYGTFELDKLRALLQA 317
Cdd:TIGR02168 930 RLEGLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
557-786 |
4.62e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 557 QLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIikKELAETTNQLSECQERLTVKEAQLAEIQQ---QLQ 633
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRL--AEYSWDEIDVASAEREIAELEAELERLDAssdDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 634 EVNEERTRLQEQLLTKEQESGldsELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEeqlhakesqlq 713
Cdd:COG4913 689 ALEEQLEELEAELEELEEELD---ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER----------- 754
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28571203 714 sLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQE-NTQYYAEIQRLQPFEQQVKELVKEREKLQDQ 786
Cdd:COG4913 755 -FAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAfNREWPAETADLDADLESLPEYLALLDRLEED 827
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
307-638 |
5.59e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 307 ELDKLRALLqAEIEDRLDSSfpQQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELMK 386
Cdd:TIGR02168 678 EIEELEEKI-EELEEKIAEL--EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 387 NNDLLLNELDKY--KRNKLETIEEHHEETIVQLEA---QLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKME 461
Cdd:TIGR02168 755 ELTELEAEIEELeeRLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 462 QKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLD 541
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 542 EKSIQMKISQDQHKLQLANLQNQLQADQEKLREL----LQLQDKLEQQKELMEVDQNQQITIIKKELAETTN-------Q 610
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEysltLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvnlaaieE 994
|
330 340 350
....*....|....*....|....*....|.
gi 28571203 611 LSECQERLTVKEAQLAEIQQ---QLQEVNEE 638
Cdd:TIGR02168 995 YEELKERYDFLTAQKEDLTEakeTLEEAIEE 1025
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
416-1030 |
5.63e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 5.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 416 QLEAQLEEARQKLELASLSSQQQMEtHLISSPEKTPvdSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQL 495
Cdd:pfam15921 246 QLEALKSESQNKIELLLQQHQDRIE-QLISEHEVEI--TGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 496 TKQQQQNQadqkkleelSQLRETLQRRDEDLKELEEQLSAVRQDLDEKsiqmKISQDQHKLQLANLQNQLQ---ADQEKL 572
Cdd:pfam15921 323 ESTVSQLR---------SELREAKRMYEDKIEELEKQLVLANSELTEA----RTERDQFSQESGNLDDQLQkllADLHKR 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 573 RELLQLQDklEQQKELMEVDQNQQITIikkelaettnqlsecqerltvkeaqlAEIQQQLQEVNEERTRLQEQLLTKEQE 652
Cdd:pfam15921 390 EKELSLEK--EQNKRLWDRDTGNSITI--------------------------DHLRRELDDRNMEVQRLEALLKAMKSE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 653 SGLDSELAKRNQELEDQLLAKEQQLQlnqAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADES---- 728
Cdd:pfam15921 442 CQGQMERQMAAIQGKNESLEKVSSLT---AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAtnae 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 729 -QQLQQTIDGLGQEKNELIKvlQQKHQENTQYYAEIQRLQPFEQQ-----VKELVKEREKLQDQVGFLKEKSDILTTNLL 802
Cdd:pfam15921 519 iTKLRSRVDLKLQELQHLKN--EGDHLRNVQTECEALKLQMAEKDkvieiLRQQIENMTQLVGQHGRTAGAMQVEKAQLE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 803 TEQTNQRLLQQQQAESQEQQASTLRDLERlRAHLLEIEELHT----QETVELQRDLEESRSrQAILEQQVSKSSTaytsa 878
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIRELEA-RVSDLELEKVKLvnagSERLRAVKDIKQERD-QLLNEVKTSRNEL----- 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 879 siraNQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALEQFQNDKDHDIEMATQrIRREMQAQLDRQG 958
Cdd:pfam15921 670 ----NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG-MQKQITAKRGQID 744
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28571203 959 QLQLEMSGLQQQLAEANQGLRAAARLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLSSSESSQTDKIDKS 1030
Cdd:pfam15921 745 ALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA 816
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
389-1017 |
6.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 6.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 389 DLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLElaslSSQQQMETHLISSPEKTPVDSELLAKMEQK-EQEY 467
Cdd:TIGR02169 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE----KLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 468 LQLQEQLAFAKTELDK-------RNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRR----DEDLKELEEQLSAV 536
Cdd:TIGR02169 290 LRVKEKIGELEAEIASlersiaeKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRrdklTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 537 RQDLDEKSIQMKISQDQHKlqlaNLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQqitiIKKELAETTNQLSECQE 616
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELK----DYREKLEKLKREINELKRELDRLQEELQRLSEELAD----LNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 617 RLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESgldSELAKRNQELEDQLLAKEQQLQLNQAEleklQETLRVNEE 696
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY---DRVEKELSKLQRELAEAEAQARASEER----VRGGRAVEE 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 697 QLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTI---DGLGQEKNELIKvlqqKHQENTQYYAEIQRLQPFEQQV 773
Cdd:TIGR02169 515 VLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVvedDAVAKEAIELLK----RRKAGRATFLPLNKMRDERRDL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 774 KELVKE--------------------REKLQDQV---------------------GFLKEKSDILTTNLLTE---QTNQR 809
Cdd:TIGR02169 591 SILSEDgvigfavdlvefdpkyepafKYVFGDTLvvedieaarrlmgkyrmvtleGELFEKSGAMTGGSRAPrggILFSR 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 810 LLQQQQAESQEQQASTLRDLERLRAHLLEIEEL---HTQETVELQRDLEESRSRQAILEQQVSKSstaytsasiraNQQA 886
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRldeLSQELSDASRKIGEIEKEIEQLEQEEEKL-----------KERL 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 887 ETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALE------------------QFQNDKDHDIEMATQRIRR 948
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNdlearlshsripeiqaelSKLEEEVSRIEARLREIEQ 819
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28571203 949 EMQAQLDRQGQLQLEMSGLQQQLAEANQglrAAARLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLS 1017
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLKE---QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
764-1025 |
6.56e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 6.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 764 QRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDL----ERLRAHLLEI 839
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIarleERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 840 EELhTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDRELKQQA 919
Cdd:COG1196 319 EEL-EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 920 ALTNLQCALEQFQNDKDHDIEMATQRIRREMQAQLDRQGQLQLEMSgLQQQLAEANQGLRAAARLSDQLEAGQQTIAVLR 999
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260
....*....|....*....|....*.
gi 28571203 1000 DEVESLKEANGQLEQRLSSSESSQTD 1025
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEAD 502
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
578-1024 |
6.68e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 6.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 578 LQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQErltvKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQEsglds 657
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEE----KEEEYAELQEELEELEEELEELEAELEELREE----- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 658 elaKRNQELEDQLLAKEQQLQLNQAELEKLQETLrvneEQLLAKEEQLHAKESQLQSLESQLQgQLAADESQQLQQTIDG 737
Cdd:COG4717 118 ---LEKLEKLLQLLPLYQELEALEAELAELPERL----EELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 738 LGQEKNELIKVLQQKHQENTQYYAEIQRLQpfeQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAE 817
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQ---EELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGG 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 818 SQEQQASTLRDLERLRAHLLEIEELHTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQ 897
Cdd:COG4717 267 SLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 898 QQRDELLAKLGQYEdRELKQQAALTNLQCALEQFQNDKDHDIematqrirREMQAQLDRQGQLQLEMSGLQQQLAEANQG 977
Cdd:COG4717 347 EELQELLREAEELE-EELQLEELEQEIAALLAEAGVEDEEEL--------RAALEQAEEYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 28571203 978 LRAAA------RLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLSSSESSQT 1024
Cdd:COG4717 418 LEELLealdeeELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
527-980 |
6.76e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 50.68 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 527 KELEEQLSAVRQDLdEKSIQMKISQDQHKLQLANLQNQLQADQEKLR----ELLQLQDKLeqQKELMEVDQNQQITIIKK 602
Cdd:PRK11281 52 KLLEAEDKLVQQDL-EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRqaqaELEALKDDN--DEETRETLSTLSLRQLES 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 603 ELAETTNQLSECQERLTVKEAQLAEIQQQLQ----EVNEERTRLQE--QLLTKEQESGLDSELAKRNQeLEDQLLAKEQQ 676
Cdd:PRK11281 129 RLAQTLDQLQNAQNDLAEYNSQLVSLQTQPEraqaALYANSQRLQQirNLLKGGKVGGKALRPSQRVL-LQAEQALLNAQ 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 677 LQLNQAELEKlqetlrvneeqllakeeqlhakESQLQSLEsQLQGQLAADESQQLQQTIDGLgQEknelikVLQQKhqen 756
Cdd:PRK11281 208 NDLQRKSLEG----------------------NTQLQDLL-QKQRDYLTARIQRLEHQLQLL-QE------AINSK---- 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 757 tqyyaeiqRLQPFEQQVKELVKEREKLQDQVG-FLKEKSDI---LTTNLL--TEQTNQRllqqqqaesQEQQASTLRDLE 830
Cdd:PRK11281 254 --------RLTLSEKTVQEAQSQDEAARIQANpLVAQELEInlqLSQRLLkaTEKLNTL---------TQQNLRVKNWLD 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 831 RLRAHLLEIEElhtQETVeLQRDLEESRsrqaILEQQVSKSSTAYTSASIrANQQAETLQAQHALLQQqRDELlAKLGQY 910
Cdd:PRK11281 317 RLTQSERNIKE---QISV-LKGSLLLSR----ILYQQQQALPSADLIEGL-ADRIADLRLEQFEINQQ-RDAL-FQPDAY 385
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28571203 911 EDRELKQQAALTNlqcaleqfqnDKDHDIEMATQRIRREMQAQLDRQGQLQLEMS-GL---QQQLAEANQGLRA 980
Cdd:PRK11281 386 IDKLEAGHKSEVT----------DEVRDALLQLLDERRELLDQLNKQLNNQLNLAiNLqlnQQQLLSVSDSLQS 449
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
454-705 |
9.68e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 454 SELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQL-TKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQ 532
Cdd:PRK04863 847 VELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLAdETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPI 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 533 LSAVRQDlDEKSIQMKISQDQHKLQLANLQNQLQAdqekLRELLQLQDKLEQQKELMEVDQNQQITI-IKKELAETTNQL 611
Cdd:PRK04863 927 VSVLQSD-PEQFEQLKQDYQQAQQTQRDAKQQAFA----LTEVVQRRAHFSYEDAAEMLAKNSDLNEkLRQRLEQAEQER 1001
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 612 SECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQE---------SGLDSELAKRNQELEDQLLAK-------EQ 675
Cdd:PRK04863 1002 TRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQElqdlgvpadSGAEERARARRDELHARLSANrsrrnqlEK 1081
|
250 260 270
....*....|....*....|....*....|
gi 28571203 676 QLQLNQAELEKLQETLRVNEEQLLAKEEQL 705
Cdd:PRK04863 1082 QLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
597-933 |
1.06e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 597 ITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSEL-AKRNQELEDQLLAKEQ 675
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALlVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 676 QLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQ--GQLAADESQQLQQT---IDGLGQEKNELIKVLQ 750
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYalANEISRLEQQKQILrerLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 751 QKHQENTQYYAEIQRLQP----FEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEqqastl 826
Cdd:TIGR02168 327 ELESKLDELAEELAELEEkleeLKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN------ 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 827 rDLERLRAHLLEIEElHTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRAnqQAETLQAQHALLQQQRDELLAK 906
Cdd:TIGR02168 401 -EIERLEARLERLED-RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE--ELERLEEALEELREELEEAEQA 476
|
330 340
....*....|....*....|....*..
gi 28571203 907 LGQYEDRELKQQAALTNLQCALEQFQN 933
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEG 503
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
564-1025 |
1.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 564 QLQADQEKLRELLQLQDKLEQQKELMEVDQNQQitiikkELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQ 643
Cdd:COG4913 256 PIRELAERYAAARERLAELEYLRAALRLWFAQR------RLELLEAELEELRAELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 644 EQLltkeQESGLD--SELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQG 721
Cdd:COG4913 330 AQI----RGNGGDrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 722 QL--AADESQQLQQTIDGLGQEKNELikvlqQKHQENtqYYAEIQRLQpfeqqvKELVKEREKLQDQVGFLKEKSDILT- 798
Cdd:COG4913 406 ALaeAEAALRDLRRELRELEAEIASL-----ERRKSN--IPARLLALR------DALAEALGLDEAELPFVGELIEVRPe 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 799 ----------------TNLL------------TEQTNQRL-LQQQQAESQEQQASTLRDLERLRAHLLEIE--------- 840
Cdd:COG4913 473 eerwrgaiervlggfaLTLLvppehyaaalrwVNRLHLRGrLVYERVRTGLPDPERPRLDPDSLAGKLDFKphpfrawle 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 841 -ELHTQETVELQRDLEE-SRSRQAILEQ-QVSKSSTAY---TSASIRAN----QQAETLQAQHALLQQQRDELLAKLGQY 910
Cdd:COG4913 553 aELGRRFDYVCVDSPEElRRHPRAITRAgQVKGNGTRHekdDRRRIRSRyvlgFDNRAKLAALEAELAELEEELAEAEER 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 911 EDRELKQQAALTNLQCALEQFQNDKDHDIEMAtqrirremqaqldrqgQLQLEMSGLQQQLAEANQGLRAAARLSDQLEA 990
Cdd:COG4913 633 LEALEAELDALQERREALQRLAEYSWDEIDVA----------------SAEREIAELEAELERLDASSDDLAALEEQLEE 696
|
490 500 510
....*....|....*....|....*....|....*
gi 28571203 991 GQQTIAVLRDEVESLKEANGQLEQRLSSSESSQTD 1025
Cdd:COG4913 697 LEAELEELEEELDELKGEIGRLEKELEQAEEELDE 731
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
454-1021 |
1.10e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 454 SELLAKMEQKEQEylQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQL 533
Cdd:PRK02224 190 DQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETI 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 534 SAVRQDLDEksiqmkisqdqhklqlanLQNQLQADQEKLRELLQLQDKLEQQKELMEVDqnqqITIIKKELAETTNQLSE 613
Cdd:PRK02224 268 AETEREREE------------------LAEEVRDLRERLEELEEERDDLLAEAGLDDAD----AEAVEARREELEDRDEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 614 CQERltvkeaqLAEIQQQLQEVNEERTRLQEQLLTKEQESgldSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRV 693
Cdd:PRK02224 326 LRDR-------LEECRVAAQAHNEEAESLREDADDLEERA---EELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 694 NEEQLLAKEEQLHAkesqlqslesqlqgqlAADESQQLQQTIDGLGQEKNEL---IKVLQQKHQENTQYYAE-------- 762
Cdd:PRK02224 396 LRERFGDAPVDLGN----------------AEDFLEELREERDELREREAELeatLRTARERVEEAEALLEAgkcpecgq 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 763 -------IQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEqtnqrllqqqqaesqeqqastlRDLERLRAH 835
Cdd:PRK02224 460 pvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE----------------------DRIERLEER 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 836 LLEIEELHTQ--ETVELQRD-LEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAkLGQYED 912
Cdd:PRK02224 518 REDLEELIAErrETIEEKRErAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES-LERIRT 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 913 relkQQAALTNLQCALEQFQNDKDHDIEMATQRiRREMQAQLDRQGQLQLEMSG-----LQQQLAEANQGLRAAARLSDQ 987
Cdd:PRK02224 597 ----LLAAIADAEDEIERLREKREALAELNDER-RERLAEKRERKRELEAEFDEarieeAREDKERAEEYLEQVEEKLDE 671
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 28571203 988 LEAG----QQTIAVLR---DEVESLKEANGQLEQRLSSSES 1021
Cdd:PRK02224 672 LREErddlQAEIGAVEnelEELEELRERREALENRVEALEA 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
480-698 |
1.45e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 480 ELDKRNKLLER------NGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEksiqmkisqdq 553
Cdd:COG4913 591 EKDDRRRIRSRyvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD----------- 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 554 hKLQLANLQNQLQADQEKLRELLQLQDKLEQqkelmevdqnqqitiIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQ 633
Cdd:COG4913 660 -EIDVASAEREIAELEAELERLDASSDDLAA---------------LEEQLEELEAELEELEEELDELKGEIGRLEKELE 723
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28571203 634 EVNEERTRLQEQL--LTKEQESGLDSELAKRNQELEDQLLAKEQQLQLnQAELEKLQETLRVNEEQL 698
Cdd:COG4913 724 QAEEELDELQDRLeaAEDLARLELRALLEERFAAALGDAVERELRENL-EERIDALRARLNRAEEEL 789
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
567-726 |
1.67e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 567 ADQEKLRELLQLQDKLEQQKELMEVDQN--QQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQE 644
Cdd:COG1579 1 AMPEDLRALLDLQELDSELDRLEHRLKElpAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 645 QL-----------LTKEQESgldseLAKRNQELEDQLL-------AKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLH 706
Cdd:COG1579 81 QLgnvrnnkeyeaLQKEIES-----LKRRISDLEDEILelmerieELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
170 180
....*....|....*....|
gi 28571203 707 AKESQLQSLESQLQGQLAAD 726
Cdd:COG1579 156 AELEELEAEREELAAKIPPE 175
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
455-776 |
1.98e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 48.36 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 455 ELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLS 534
Cdd:COG4372 49 QLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 535 AVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSEC 614
Cdd:COG4372 129 QQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 615 QERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVN 694
Cdd:COG4372 209 IESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 695 EEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVK 774
Cdd:COG4372 289 EEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVA 368
|
..
gi 28571203 775 EL 776
Cdd:COG4372 369 DG 370
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
551-762 |
4.34e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 551 QDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKElmevDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQ 630
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYN----ELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 631 QLQEVNEERTRLQEQLLTKEQESGLD-----SELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQL 705
Cdd:COG3883 94 ALYRSGGSVSYLDVLLGSESFSDFLDrlsalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 28571203 706 HAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAE 762
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
510-677 |
4.96e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 4.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 510 EELSQLREtLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQH---KLQLANLQNQLQADQEKLRELLQLQDKLEQQk 586
Cdd:COG1579 4 EDLRALLD-LQELDSELDRLEHRLKELPAELAELEDELAALEARLeaaKTELEDLEKEIKRLELEIEEVEARIKKYEEQ- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 587 eLMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQEsgLDSELAKRNQEL 666
Cdd:COG1579 82 -LGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE--LDEELAELEAEL 158
|
170
....*....|.
gi 28571203 667 EdQLLAKEQQL 677
Cdd:COG1579 159 E-ELEAEREEL 168
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
204-855 |
5.31e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 5.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 204 QLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAeqeghaqnleeqLGDLREDNQRLRQELKTSIaqakfr 283
Cdd:pfam15921 86 QVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDA------------MADIRRRESQSQEDLRNQL------ 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 284 QAIAEEKQEITDLDDADSEYGTFELDKLRALLQAEiedrldssfpQQKLERAWNALkdrwhrLDLVEQRLVDVQNQQLVS 363
Cdd:pfam15921 148 QNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSH----------EGVLQEIRSIL------VDFEEASGKKIYEHDSMS 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 364 EHEKKTLEADISQyilqcdelmknndlLLNELDkykrNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMEtHL 443
Cdd:pfam15921 212 TMHFRSLGSAISK--------------ILRELD----TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIE-QL 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 444 ISSPEKTPvdSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQadqkkleelSQLRETLQRRD 523
Cdd:pfam15921 273 ISEHEVEI--TGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLR---------SELREAKRMYE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 524 EDLKELEEQLSAVRQDLDEKsiqmKISQDQHKLQLANLQNQLQ---ADQEKLRELLQLQDklEQQKELMEVDQNQQITI- 599
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEA----RTERDQFSQESGNLDDQLQkllADLHKREKELSLEK--EQNKRLWDRDTGNSITId 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 600 -IKKELAETTNQL-----------SECQERLtvkEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELE 667
Cdd:pfam15921 416 hLRRELDDRNMEVqrleallkamkSECQGQM---ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 668 D----------QLLAKEQQLQLNQAELEKLQETLRVNEEQLlakeEQLHAKESQLQSLESQLqgqlaadESQQLQQTidg 737
Cdd:pfam15921 493 SsertvsdltaSLQEKERAIEATNAEITKLRSRVDLKLQEL----QHLKNEGDHLRNVQTEC-------EALKLQMA--- 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 738 lgqEKNELIKVLQQKHQENTQYYAEIQR----LQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQ 813
Cdd:pfam15921 559 ---EKDKVIEILRQQIENMTQLVGQHGRtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKV 635
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 28571203 814 QQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQRDLE 855
Cdd:pfam15921 636 KLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE 677
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
623-884 |
6.56e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 6.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 623 AQLAEIQQQLQEVNEERTRLQEQLltkeqesgldSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKE 702
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL----------AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 703 EQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGL--GQEKNELIKVLqqkhqentQYYAEIQRLQpfEQQVKELVKER 780
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLlsPEDFLDAVRRL--------QYLKYLAPAR--REQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 781 EKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESqeqqastlrdlERLRAHLLEIEELHTQETVELQRDLEESRSR 860
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAER-----------QKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250 260
....*....|....*....|....
gi 28571203 861 QAILEQQVSKSSTAYTSASIRANQ 884
Cdd:COG4942 229 IARLEAEAAAAAERTPAAGFAALK 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
622-801 |
7.88e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 7.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 622 EAQLAEIQQQLQEVNE-----ERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAK------EQQLQLNQAELEKLQET 690
Cdd:COG4913 224 FEAADALVEHFDDLERahealEDAREQIELLEPIRELAERYAAARERLAELEYLRAAlrlwfaQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 691 LRVNEEQLLAKEEQLHAKESQLQSLESQLQGQlAADESQQLQQTIDGLGQEKNELIKVLQqkhqentQYYAEIQRLQ-PF 769
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGN-GGDRLEQLEREIERLERELEERERRRA-------RLEALLAALGlPL 375
|
170 180 190
....*....|....*....|....*....|..
gi 28571203 770 EQQVKELVKEREKLQDQVGFLKEKSDILTTNL 801
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
514-750 |
9.50e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.97 E-value: 9.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 514 QLRETLQRRDEDLKELEEQLSAvrQDLDEKSIQmkISQdqhklQLANLQNQLQADQEKLRE----LLQL-QDKLEQQKEL 588
Cdd:PRK10929 83 ELRQQLNNERDEPRSVPPNMST--DALEQEILQ--VSS-----QLLEKSRQAQQEQDRAREisdsLSQLpQQQTEARRQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 589 MEVDQNQQiTIIKKELAETTNQLSECQERLTVKEAQLAEIQ-QQLQEVN-EERTRLQEQLLTKEQESgLDSELakrnQEL 666
Cdd:PRK10929 154 NEIERRLQ-TLGTPNTPLAQAQLTALQAESAALKALVDELElAQLSANNrQELARLRSELAKKRSQQ-LDAYL----QAL 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 667 EDQLLAKEQQlqlnqaeleklqetlrvNEEQLLAKEEQLHAKESQL-QSLESQLQ--GQLAADESQQLQQtIDGLG---- 739
Cdd:PRK10929 228 RNQLNSQRQR-----------------EAERALESTELLAEQSGDLpKSIVAQFKinRELSQALNQQAQR-MDLIAsqqr 289
|
250
....*....|.
gi 28571203 740 QEKNELIKVLQ 750
Cdd:PRK10929 290 QAASQTLQVRQ 300
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
454-705 |
1.02e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 454 SELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQL-TKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQ 532
Cdd:COG3096 846 SELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLAdETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPL 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 533 LSAVRQD-LDEKSIQmkisqdQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQQIT-IIKKELAETTNQ 610
Cdd:COG3096 926 VAVLQSDpEQFEQLQ------ADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNeKLRARLEQAEEA 999
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 611 LSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQE---------SGLDSELAKRNQELEDQLLAK-------E 674
Cdd:COG3096 1000 RREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQEleelgvqadAEAEERARIRRDELHEELSQNrsrrsqlE 1079
|
250 260 270
....*....|....*....|....*....|.
gi 28571203 675 QQLQLNQAELEKLQETLRVNEEQLLAKEEQL 705
Cdd:COG3096 1080 KQLTRCEAEMDSLQKRLRKAERDYKQEREQV 1110
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
34-298 |
1.21e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 34 ARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAKEK- 112
Cdd:TIGR02169 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKl 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 113 --------KTSESSSNSSSTGKHSEDEFIVVRQADATGSGSASGSDRDPDADVTSPPSKEK------LRDRLVSLESQIS 178
Cdd:TIGR02169 778 eealndleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELqeqridLKEQIKSIEKEIE 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 179 ELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVnlqlRLQQLTVQNQELKLHAEaEQEGHAQNLEEQ 258
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER----KIEELEAQIEKKRKRLS-ELKAKLEALEEE 932
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 28571203 259 LGDLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITDLDD 298
Cdd:TIGR02169 933 LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEP 972
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
595-858 |
1.30e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 595 QQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQEsglDSELAKRNQELEDQLLAKE 674
Cdd:COG4372 38 FELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAE---LAQAQEELESLQEEAEELQ 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 675 QQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQ 754
Cdd:COG4372 115 EELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 755 ENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRA 834
Cdd:COG4372 195 NAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTE 274
|
250 260
....*....|....*....|....
gi 28571203 835 HLLEIEELHTQETVELQRDLEESR 858
Cdd:COG4372 275 EEELEIAALELEALEEAALELKLL 298
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
454-645 |
1.77e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 454 SELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKE-LEEQ 532
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEeLAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 533 LSAVRQDLDEKSIQMKISQD---QHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKElmevDQNQQITIIKKELAETTN 609
Cdd:COG4942 110 LRALYRLGRQPPLALLLSPEdflDAVRRLQYLKYLAPARREQAEELRADLAELAALRA----ELEAERAELEALLAELEE 185
|
170 180 190
....*....|....*....|....*....|....*.
gi 28571203 610 QLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQ 645
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
167-339 |
2.39e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 167 RDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQV-----NLQLRLQQLTVQNQELK 241
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAereiaELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 242 -LHAEAEQ-EGHAQNLEEQLGDLREDNQRLRQELK---TSIAQAKFRQAIAEEKQEITDLDDADSEYGTFELDKLRALLQ 316
Cdd:COG4913 689 aLEEQLEElEAELEELEEELDELKGEIGRLEKELEqaeEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
170 180
....*....|....*....|...
gi 28571203 317 AEIEDRLDSSfpQQKLERAWNAL 339
Cdd:COG4913 769 ENLEERIDAL--RARLNRAEEEL 789
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
164-792 |
2.85e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 164 EKLRDRLVSLESQISELTLANTQLQDAQLEkqlsINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKlh 243
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLE----LENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALN-- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 244 aeaeqeghaqnleeQLGDLREDNQRLRQELKTSIAQakfrqaIAEEKQEITDLDDADSEYGTFELDKLRAllqaeiedrl 323
Cdd:PRK01156 243 --------------ELSSLEDMKNRYESEIKTAESD------LSMELEKNNYYKELEERHMKIINDPVYK---------- 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 324 dssfPQQKLERAWNALKDRWHRLDLVEQrlVDVQNQQLVSEHEK-KTLEADISQYILQCDElMKNNDLLLNELDKYKRNK 402
Cdd:PRK01156 293 ----NRNYINDYFKYKNDIENKKQILSN--IDAEINKYHAIIKKlSVLQKDYNDYIKKKSR-YDDLNNQILELEGYEMDY 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 403 LETIEEHHeetivQLEAQLEEARQKLELASLSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELD 482
Cdd:PRK01156 366 NSYLKSIE-----SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLD 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 483 KrnklLERNGEQLT------------KQQQQNQADQKKLEELSQLRETLQRRDEDLKELEE---QLSAVRQDLDEKSIQM 547
Cdd:PRK01156 441 E----LSRNMEMLNgqsvcpvcgttlGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEkivDLKKRKEYLESEEINK 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 548 KISQDQhklQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEV----DQNQQITIIKKELAETTN-QLSECQERLTVKE 622
Cdd:PRK01156 517 SINEYN---KIESARADLEDIKIKINELKDKHDKYEEIKNRYKSlkleDLDSKRTSWLNALAVISLiDIETNRSRSNEIK 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 623 AQLAEIQQQLQEVNEErtrlqeqllTKEQESGLDSELAKRNQELeDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKE 702
Cdd:PRK01156 594 KQLNDLESRLQEIEIG---------FPDDKSYIDKSIREIENEA-NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEID 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 703 E------QLHAKESQLQSLESQLQGQLAADESQQlqqtidglgQEKNELIKVLQQKHQENTQYYAEIQRlqpfeqqvkeL 776
Cdd:PRK01156 664 SiipdlkEITSRINDIEDNLKKSRKALDDAKANR---------ARLESTIEILRTRINELSDRINDINE----------T 724
|
650
....*....|....*.
gi 28571203 777 VKEREKLQDQVGFLKE 792
Cdd:PRK01156 725 LESMKKIKKAIGDLKR 740
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
509-847 |
2.88e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 509 LEELSQLRETLQRRDEDLKELEEQlsavRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKEL 588
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQ----ELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 589 MEVDQNQQITIIKKELAETTNQLSEcqerltVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELED 668
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENK------EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 669 QLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLqgQLAADESQQLQQTIDGLGQEKNELIKV 748
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEEL--LAKKKLESERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 749 LQQKHQENTQYYAEIQRLQPFEQQVKELVKE--REKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTL 826
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEeeEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340
....*....|....*....|.
gi 28571203 827 RDLERLRAHLLEIEELHTQET 847
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKES 503
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
624-780 |
3.21e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 44.70 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 624 QLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAE--LEKLQETLRVNEEQLLAK 701
Cdd:PRK12705 31 LAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEeqLDARAEKLDNLENQLEER 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 702 EEQLHAKESQLQSLESQLQGQL---AADESQQLQQTI-----DGLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQV 773
Cdd:PRK12705 111 EKALSARELELEELEKQLDNELyrvAGLTPEQARKLLlklldAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIA 190
|
....*..
gi 28571203 774 KELVKER 780
Cdd:PRK12705 191 SETASDL 197
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
510-745 |
3.55e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 510 EELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQM---------------KISQDQHKLQLANL-QNQLQADQEKLR 573
Cdd:pfam17380 299 ERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYaeqermamerereleRIRQEERKRELERIrQEEIAMEISRMR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 574 ELLQLQDKLEQQKELM--EVDQNQQITIIKKELAETTNQlsECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQ 651
Cdd:pfam17380 379 ELERLQMERQQKNERVrqELEAARKVKILEEERQRKIQQ--QKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 652 ESGLDSELAKRNQ------------ELEDQLLAKEQQLQLNQAELEKLQETL--RVNEEQLLAKE----EQLHAKESQLQ 713
Cdd:pfam17380 457 ERQQQVERLRQQEeerkrkklelekEKRDRKRAEEQRRKILEKELEERKQAMieEERKRKLLEKEmeerQKAIYEEERRR 536
|
250 260 270
....*....|....*....|....*....|..
gi 28571203 714 SLESQLQGQLAADESQQLQQTIDGLGQEKNEL 745
Cdd:pfam17380 537 EAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
36-671 |
4.41e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 4.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 36 QQKQLDELRQTSSAAK-------KQQEELQRRVEQQ--EAELIEMQDLLDKRRQDTAELIERVRVAETERErllkdleet 106
Cdd:PRK02224 160 QLGKLEEYRERASDARlgvervlSDQRGSLDQLKAQieEKEEKDLHERLNGLESELAELDEEIERYEEQRE--------- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 107 rQAKEKKTSESSSNSSSTGKHSEDEFIVVRQADATGSGSASGSDRDPDADVTSppskeKLRDRLVSLESQISELtLANTQ 186
Cdd:PRK02224 231 -QARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVR-----DLRERLEELEEERDDL-LAEAG 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 187 LQDAqlekqlSINMLGEQLVELEKRlrlseaekeqlQVNLQLRLQQLTVQNQELKLHAEAEQEgHAQNLEEQLGDLREDN 266
Cdd:PRK02224 304 LDDA------DAEAVEARREELEDR-----------DEELRDRLEECRVAAQAHNEEAESLRE-DADDLEERAEELREEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 267 QRLRQEL-KTSIAQAKFRQAIAEEKQEITDL----DDADSEYGtfELDKLRALLQAEIED-RLDSSFPQQKLERAWNALK 340
Cdd:PRK02224 366 AELESELeEAREAVEDRREEIEELEEEIEELrerfGDAPVDLG--NAEDFLEELREERDElREREAELEATLRTARERVE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 341 DRWHRLDL-----VEQRLVDVQNQQLVSEHEKK--TLEADISQYILQCDELMKNNDLL--LNELDKyKRNKLETIEEHHE 411
Cdd:PRK02224 444 EAEALLEAgkcpeCGQPVEGSPHVETIEEDRERveELEAELEDLEEEVEEVEERLERAedLVEAED-RIERLEERREDLE 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 412 ETIVQLEAQLEEARQKLElaslSSQQQMETHLISSPEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERn 491
Cdd:PRK02224 523 ELIAERRETIEEKRERAE----ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL- 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 492 geqltkqqqqnqadqkkLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSiqMKISQDQHKLQLANLQnQLQADQEK 571
Cdd:PRK02224 598 -----------------LAAIADAEDEIERLREKREALAELNDERRERLAEKR--ERKRELEAEFDEARIE-EAREDKER 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 572 LRELL-QLQDKLEQQKELMEVDQNqQITIIKKELAEttnqLSECQERLTvkeaQLAEIQQQLQEVNEERTRLQEQLLTke 650
Cdd:PRK02224 658 AEEYLeQVEEKLDELREERDDLQA-EIGAVENELEE----LEELRERRE----ALENRVEALEALYDEAEELESMYGD-- 726
|
650 660
....*....|....*....|.
gi 28571203 651 qesgLDSELAKRNQELEDQLL 671
Cdd:PRK02224 727 ----LRAELRQRNVETLERML 743
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
509-678 |
4.72e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 43.91 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 509 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQL----------------------- 565
Cdd:PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLdaafrqgehtglqlilsgeesqr 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 566 ------------QADQEKLRELLQLQDKLEQQKELMEVDQNQQITII---KKELAETTNQLSECQERLTVKEAQLAEIQQ 630
Cdd:PRK11637 154 gerilayfgylnQARQETIAELKQTREELAAQKAELEEKQSQQKTLLyeqQAQQQKLEQARNERKKTLTGLESSLQKDQQ 233
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 28571203 631 QLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQEledQLLAKEQQLQ 678
Cdd:PRK11637 234 QLSELRANESRLRDSIARAEREAKARAEREAREAA---RVRDKQKQAK 278
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
22-249 |
5.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 22 QADRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLK 101
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 102 DLEETRQAKEKktseSSSNSSSTGKHSEDEFIvVRQADATGSGSASGSDRDpdadvtsppSKEKLRDRLVSLESQISELT 181
Cdd:COG4942 98 ELEAQKEELAE----LLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYLKY---------LAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28571203 182 LANTQLQDAQLEKQLSINMLGEQLVELEKRlrlsEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQE 249
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
667-948 |
5.34e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 667 EDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELi 746
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDL- 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 747 KVLQQKHQENtqyyaeiqrlqpfEQQVKELVKEREKLQDQVGFLKEKsdilTTNLLTEQtnQRLLQQQQAESQEQQASTL 826
Cdd:COG4913 688 AALEEQLEEL-------------EAELEELEEELDELKGEIGRLEKE----LEQAEEEL--DELQDRLEAAEDLARLELR 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 827 RDLERLRAHLLeIEELHTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLA- 905
Cdd:COG4913 749 ALLEERFAAAL-GDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEd 827
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 28571203 906 KLGQYEDR--ELKQQAALTNlqcaLEQFQNDKDHDIEMATQRIRR 948
Cdd:COG4913 828 GLPEYEERfkELLNENSIEF----VADLLSKLRRAIREIKERIDP 868
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
201-786 |
5.73e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 5.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 201 LGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKtsIAQA 280
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE--IIQE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 281 KFRQAIAEEKQEITDLDDADSEYGTfELDKLRALLQAEIEDRldssfpQQKLERAWNALKDRWHRLDLVEQRL--VDVQN 358
Cdd:pfam15921 307 QARNQNSMYMRQLSDLESTVSQLRS-ELREAKRMYEDKIEEL------EKQLVLANSELTEARTERDQFSQESgnLDDQL 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 359 QQLVSEHEKKTLEADISQyilQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQ 438
Cdd:pfam15921 380 QKLLADLHKREKELSLEK---EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGK 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 439 MEthlisSPEKTpvdSELLAKMEQKEQEYLQLQEQLAFAKTELDKRnkllERNGEQLTKQQQQNQADQKKLE-ELSQLRE 517
Cdd:pfam15921 457 NE-----SLEKV---SSLTAQLESTKEMLRKVVEELTAKKMTLESS----ERTVSDLTASLQEKERAIEATNaEITKLRS 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 518 TLQRRDEDLKELEEQLSAVRQdldeksiqMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQNQqi 597
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRN--------VQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ-- 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 598 tiIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRL-----------------QEQLLTKEQES------- 653
Cdd:pfam15921 595 --LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvnagserlravkdikqeRDQLLNEVKTSrnelnsl 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 654 GLDSELAKRN-----QELEDQLLAKEQQLQLNQAELEKLQETLRVNE-------EQLLAKEEQLHAKESQLQSLESQLQG 721
Cdd:pfam15921 673 SEDYEVLKRNfrnksEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghamKVAMGMQKQITAKRGQIDALQSKIQF 752
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28571203 722 QLAADESQQLQQTIdgLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQ 786
Cdd:pfam15921 753 LEEAMTNANKEKHF--LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDK 815
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
809-1020 |
7.87e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 7.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 809 RLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQR---DLEESRSRQAILEQQVSKSSTAYTSASIRANQQ 885
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEElelELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 886 AETLQAQHALLQQQRDELLAKLGQYEDRELKQQAALTNLQCALEQFQNDKDHDIEMATQRIRREMQAQLDRQGQLQLEMS 965
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 28571203 966 GLQQQLAEANQGLRAAARLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLSSSE 1020
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
594-811 |
8.44e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 594 NQQITIIKKELAETTNQLSECQER--LTVKEAQLAEIQQQLQEVNEERTRLQEQLL-TKEQESGLDSELAKRNQELEDql 670
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAeAEARLAALRAQLGSGPDALPE-- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 671 LAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQgqlaadesQQLQQTIDGLGQEKNELIKVLQ 750
Cdd:COG3206 259 LLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ--------QEAQRILASLEAELEALQAREA 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28571203 751 QKHQENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLL 811
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVI 391
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
457-678 |
8.67e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 8.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 457 LAKMEQKEQEYLQLQEQLAFAKTELD--KRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEqls 534
Cdd:pfam17380 374 ISRMRELERLQMERQQKNERVRQELEaaRKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMER--- 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 535 aVRQDLDEKSIQMKISQDQH------KLQLANLQNQLQADQEKLRELLQlqDKLEQQKELMeVDQNQQITIIKKELAETT 608
Cdd:pfam17380 451 -VRLEEQERQQQVERLRQQEeerkrkKLELEKEKRDRKRAEEQRRKILE--KELEERKQAM-IEEERKRKLLEKEMEERQ 526
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28571203 609 NQLSECQERltvkeaQLAEIQQQLQEVNEERTRLQEQLL-TKEQESGLDSelAKRNQELEDQLLAKEQQLQ 678
Cdd:pfam17380 527 KAIYEEERR------REAEEERRKQQEMEERRRIQEQMRkATEERSRLEA--MEREREMMRQIVESEKARA 589
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
621-755 |
9.11e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 42.82 E-value: 9.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 621 KEAQLAEIQQQLQEVNEERTRLQEqllTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQL-- 698
Cdd:pfam09787 56 RDLLREEIQKLRGQIQQLRTELQE---LEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrr 132
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28571203 699 --LAKEEQLHAKESQLQSLESQLQGQLAADESQ---------------QLQQTIDGLGQEKNELIKVLQQKHQE 755
Cdd:pfam09787 133 skATLQSRIKDREAEIEKLRNQLTSKSQSSSSQselenrlhqltetliQKQTMLEALSTEKNSLVLQLERMEQQ 206
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
188-720 |
1.28e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 188 QDAQLEKQLS-INMLGEQLVELEKRLRLSEAEKEQLQvNLQLRLQQLTVQNQELklhaeaeqEGHAQNLEEQLGDLREDN 266
Cdd:PRK03918 198 KEKELEEVLReINEISSELPELREELEKLEKEVKELE-ELKEEIEELEKELESL--------EGSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 267 QRLRQELKTSIAQAKFRQAIAEEKQEITDLDDADSEYgtfeLDKLRallqaEIEDRLdssfpqQKLERAWNALKDRWHRL 346
Cdd:PRK03918 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY----LDELR-----EIEKRL------SRLEEEINGIEERIKEL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 347 DLVEQRLVDVQNQQLVSEHEKKTLEADISQYiLQCDELMKNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQ 426
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEELEERHELY-EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 427 KL-ELASLSSQQQME-THLISSPEKTPVDSELLAKMEQKE--QEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQN 502
Cdd:PRK03918 413 RIgELKKEIKELKKAiEELKKAKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 503 qadqkklEELSQLRETLqrrdEDLKELEEQLSAVrqDLDEksiqmkisqdqhklqlanlqnqLQADQEKLRELLQLQDKL 582
Cdd:PRK03918 493 -------SELIKLKELA----EQLKELEEKLKKY--NLEE----------------------LEKKAEEYEKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 583 EQQKELMEVDQNQqITIIKKELAETTNQLSECQERLTVKEAQLAEIQ-QQLQEVNEERTRLQ----EQLLTKEQESGLDS 657
Cdd:PRK03918 538 KGEIKSLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfynEYLELKDAEKELER 616
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28571203 658 ELaKRNQELEDQLLAKEQQLQLNQAELEKL------------QETLRVNEEQLLAKEEQLHAKESQLQSLESQLQ 720
Cdd:PRK03918 617 EE-KELKKLEEELDKAFEELAETEKRLEELrkeleelekkysEEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
166-730 |
1.55e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 166 LRDRLVSLESQISELT-----------LANTQLQDAQL------EKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQ- 227
Cdd:PRK02224 204 LHERLNGLESELAELDeeieryeeqreQARETRDEADEvleeheERREELETLEAEIEDLRETIAETEREREELAEEVRd 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 228 LRLQQLTVQNQELKLHAEAE-QEGHAQNLEEQLGDLREDNQRLRQELKTSIAQAK-FRQAIAEEKQEITDLDDadseygt 305
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGlDDADAEAVEARREELEDRDEELRDRLEECRVAAQaHNEEAESLREDADDLEE------- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 306 feldklRALLQAEIEDRLDSsfpqqKLERAWNALKDRWHRLDLVEQRLvdvqnqqlvsehekKTLEADISQYILQCDELM 385
Cdd:PRK02224 357 ------RAEELREEAAELES-----ELEEAREAVEDRREEIEELEEEI--------------EELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 386 KNNDLLLNELDKYKrnkletieehheETIVQLEAQLEEARQKLELAslssQQQMETHLISSPEKTPVDSELLAKMEQKEQ 465
Cdd:PRK02224 412 DFLEELREERDELR------------EREAELEATLRTARERVEEA----EALLEAGKCPECGQPVEGSPHVETIEEDRE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 466 EYLQLQEQLAFAKTELDKRNKLLERnGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSI 545
Cdd:PRK02224 476 RVEELEAELEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 546 QmkisqdqhklQLANLQNQLQADQEKLRELLQLQDKLEQQKElmEVDQNQQITIIKKELAETTNQLSECQERLtvkeAQL 625
Cdd:PRK02224 555 E----------KREAAAEAEEEAEEAREEVAELNSKLAELKE--RIESLERIRTLLAAIADAEDEIERLREKR----EAL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 626 AEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELE---------DQLLAKEQQLQLN----QAELEKLqETLR 692
Cdd:PRK02224 619 AELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEyleqveeklDELREERDDLQAEigavENELEEL-EELR 697
|
570 580 590
....*....|....*....|....*....|....*...
gi 28571203 693 VNEEQLLAKEEQLHAKESQLQSLESqLQGQLAADESQQ 730
Cdd:PRK02224 698 ERREALENRVEALEALYDEAEELES-MYGDLRAELRQR 734
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
525-784 |
2.03e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 42.48 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 525 DLKELEEQLSAVRQDLDEKSIQMKIS----QDQHKLQLANLQNQLQADQEKLR--ELLQLQDKLEQ-QKELMEVDQNQQI 597
Cdd:PRK10246 199 ELEKLQAQASGVALLTPEQVQSLTASlqvlTDEEKQLLTAQQQQQQSLNWLTRldELQQEASRRQQaLQQALAAEEKAQP 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 598 TIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVN-------------------------EERTRLQEQLLTKEQE 652
Cdd:PRK10246 279 QLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNtrlqstmalrarirhhaakqsaelqAQQQSLNTWLAEHDRF 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 653 SGLDSELAKRNQELEDQLLAKEQQLQLNQ--AELEKLQETLRVNEEQLLAKEE----QLHAKESQLQSLESQLQGQLAAD 726
Cdd:PRK10246 359 RQWNNELAGWRAQFSQQTSDREQLRQWQQqlTHAEQKLNALPAITLTLTADEVaaalAQHAEQRPLRQRLVALHGQIVPQ 438
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28571203 727 ES--QQLQQTIDGLGQEKNELIKVLQQKHQ---ENTQYYAEIQRLQPFEQQVKELVKEREKLQ 784
Cdd:PRK10246 439 QKrlAQLQVAIQNVTQEQTQRNAALNEMRQrykEKTQQLADVKTICEQEARIKDLEAQRAQLQ 501
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
472-1038 |
2.11e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 472 EQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKsiqmkisq 551
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN-------- 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 552 dqhklqLANLQNQLQADQEKLrelLQLQDKLEQQKELmevdqNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQ 631
Cdd:TIGR04523 189 ------IDKIKNKLLKLELLL---SNLKKKIQKNKSL-----ESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQ 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 632 LQEVNEERTRLQEQLLTKEQESgldSELAKRNQELEDQLlaKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQ 711
Cdd:TIGR04523 255 LNQLKDEQNKIKKQLSEKQKEL---EQNNKKIKELEKQL--NQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQ 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 712 LQslesqlqgqlaadesqQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQpfeQQVKELVKEREKLQDQVGFLK 791
Cdd:TIGR04523 330 IS----------------QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ---NEIEKLKKENQSYKQEIKNLE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 792 EKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLL----EIEELHTQETVeLQRDLEESRSRQAILEQQ 867
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIknnsEIKDLTNQDSV-KELIIKNLDNTRESLETQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 868 VSKsstayTSASIRANQQAetlqaqhallqqqrdelLAKLGQYEDRELKQQAALTNLQCALEQFQNDKDHDIEMATQRIr 947
Cdd:TIGR04523 470 LKV-----LSRSINKIKQN-----------------LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI- 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 948 remQAQLDRQGQLQLEMSGLQQQLAEANQGLRAAaRLSDQLEAGQQTIAVLRDEVESLKEANGQLEQRLSSSESSQTDKI 1027
Cdd:TIGR04523 527 ---EKLESEKKEKESKISDLEDELNKDDFELKKE-NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLI 602
|
570
....*....|.
gi 28571203 1028 DKSLIKSLLIG 1038
Cdd:TIGR04523 603 KEIEEKEKKIS 613
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
161-728 |
2.28e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 161 PSKEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQL--QVNLQLRLQQLTVQNQ 238
Cdd:pfam12128 241 PEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrdELNGELSAADAAVAKD 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 239 ELKLHAEAEQEG------------HAQNLEEQLGDLREDNQRLR-QELKTSIAQAKFRQAIAEEKQEITDlDDADSEYGT 305
Cdd:pfam12128 321 RSELEALEDQHGafldadietaaaDQEQLPSWQSELENLEERLKaLTGKHQDVTAKYNRRRSKIKEQNNR-DIAGIKDKL 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 306 FELDKLRALLQAEIEDRLdssfpqQKLERAWNalkdrwhrlDLVEQRLVDVQNQQLVSEHEKKTLEADISQYILQCDELM 385
Cdd:pfam12128 400 AKIREARDRQLAVAEDDL------QALESELR---------EQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 386 --KNNDLLLNELDKyKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQM----ETHLISSPEKTPVDSELLAK 459
Cdd:pfam12128 465 qlENFDERIERARE-EQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQsaldELELQLFPQAGTLLHFLRKE 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 460 MEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGE----------QLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKEL 529
Cdd:pfam12128 544 APDWEQSIGKVISPELLHRTDLDPEVWDGSVGGElnlygvkldlKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 530 EEQLSAVRQDLDEKSIQM---KISQDQHKLQLANLQNQLQADQEKLRELL--------QLQDKLEQQKELMEVDQNQQIT 598
Cdd:pfam12128 624 EEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQSEKDKKNKALaerkdsanERLNSLEAQLKQLDKKHQAWLE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 599 IIKKELAE-TTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQES----GLDSE-LAKRNQELEDqLLA 672
Cdd:pfam12128 704 EQKEQKREaRTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDlaslGVDPDvIAKLKREIRT-LER 782
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 28571203 673 KEQQLQLNQAELEKLQETLRvneEQLLAKEEQLHAKESQLQSLESQLQGQLAADES 728
Cdd:pfam12128 783 KIERIAVRRQEVLRYFDWYQ---ETWLQRRPRLATQLSNIERAISELQQQLARLIA 835
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
454-622 |
2.34e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 454 SELLAKMEQKEQ-----EYLQLQEQLAFAKTELDKRNKLLERNGEQLtkqqqqnqadqkkLEELSQLRETLQRRDEDLKE 528
Cdd:COG2433 379 EEALEELIEKELpeeepEAEREKEHEERELTEEEEEIRRLEEQVERL-------------EAEVEELEAELEEKDERIER 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 529 LEEQLSAVRQdldEKSIQMKISQDQHKLQ--LANLQNQLQADQEKLRELlqlQDKLEQQKELMEVDQNQQITIIKKELAE 606
Cdd:COG2433 446 LERELSEARS---EERREIRKDREISRLDreIERLERELEEERERIEEL---KRKLERLKELWKLEHSGELVPVKVVEKF 519
|
170
....*....|....*.
gi 28571203 607 TTNQLSECQERLTVKE 622
Cdd:COG2433 520 TKEAIRRLEEEYGLKE 535
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
52-698 |
2.35e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 52 KQQEELQRRVEQQEAELIEMQDLLDKRRQDTAELIERVRVAETERERLLKDLEETRQAKEKKTSESSsnssstgkhsede 131
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG------------- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 132 fivvrqadatgsgsasgsdrdpdadvtsppSKEKLRDRLVSLESQISELTLANTQLQdaqlEKQLSINMLGEQLVELEKR 211
Cdd:PRK03918 253 ------------------------------SKRKLEEKIRELEERIEELKKEIEELE----EKVKELKELKEKAEEYIKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 212 LRLSEAEKEQLQvNLQLRLQQLTVQNQELKlhaeaEQEGHAQNLEEQLGDLREDNQRLRQELKtsiAQAKFRQAIAEEKQ 291
Cdd:PRK03918 299 SEFYEEYLDELR-EIEKRLSRLEEEINGIE-----ERIKELEEKEERLEELKKKLKELEKRLE---ELEERHELYEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 292 EITDLDDADSEYGTFELDKLRALLQaEIEDRldssfpQQKLERAWNALKDRWHRLDLVEQRLVDVQNQ------------ 359
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKELE-ELEKA------KEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcg 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 360 QLVSEHEKKTLeadISQYILQCDELMKNNDLLLNELDKYKRNKletieehheetiVQLEAQLEEARQklelasLSSQQQM 439
Cdd:PRK03918 443 RELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKEL------------RELEKVLKKESE------LIKLKEL 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 440 ETHLISSPEKTpvDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERngeqltkqqqqnqadqkkLEELSQLRETL 519
Cdd:PRK03918 502 AEQLKELEEKL--KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK------------------LEELKKKLAEL 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 520 QRRdedLKELEEQLSAVRQDLDEKSIQmkisqdqhklqlanlqnQLQADQEKLRELLQLQDKLEQQKelmevDQNQQITI 599
Cdd:PRK03918 562 EKK---LDELEEELAELLKELEELGFE-----------------SVEELEERLKELEPFYNEYLELK-----DAEKELER 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 600 IKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVN-----EERTRLQEQLLTKEQE-SGLDSELaKRNQELEDQLLAK 673
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRElAGLRAEL-EELEKRREEIKKT 695
|
650 660
....*....|....*....|....*
gi 28571203 674 EQQLQLNQAELEKLQETLRVNEEQL 698
Cdd:PRK03918 696 LEKLKEELEEREKAKKELEKLEKAL 720
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
455-865 |
2.70e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 455 ELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNG--EQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQ 532
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 533 LSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQlqdklEQQKELMEVDQNQQITIIKKELAETTNQLS 612
Cdd:COG4717 172 LAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE-----EAQEELEELEEELEQLENELEAAALEERLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 613 ECQERLTVkEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQL----QLNQAELEKLQ 688
Cdd:COG4717 247 EARLLLLI-AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALpaleELEEEELEELL 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 689 ETLRVNEEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNElikvlqqkhQENTQYYAEIQRLQP 768
Cdd:COG4717 326 AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGV---------EDEEELRAALEQAEE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 769 FEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQrlLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETV 848
Cdd:COG4717 397 YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE--LEEELEELEEELEELREELAELEAELEQLEEDGELAEL 474
|
410
....*....|....*..
gi 28571203 849 ELQRDLEESRSRQAILE 865
Cdd:COG4717 475 LQELEELKAELRELAEE 491
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
459-784 |
2.74e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 459 KMEQKEQEYLQLQEQLAFAKTELDKRNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDL-KELEEQLSAVR 537
Cdd:TIGR00618 529 RMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLqDLTEKLSEAED 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 538 QDLDEKSIQM-KISQDQHKLQLANLQNQLQADQEKLR------ELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTN- 609
Cdd:TIGR00618 609 MLACEQHALLrKLQPEQDLQDVRLHLQQCSQELALKLtalhalQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSe 688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 610 --QLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQeledQLLAKEQQLQLNQAELEKL 687
Cdd:TIGR00618 689 keQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL----KELMHQARTVLKARTEAHF 764
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 688 QETLRVN-EEQLLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRL 766
Cdd:TIGR00618 765 NNNEEVTaALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATL 844
|
330
....*....|....*...
gi 28571203 767 QPFEQQVKELVKEREKLQ 784
Cdd:TIGR00618 845 GEITHQLLKYEECSKQLA 862
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
509-779 |
3.52e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.36 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 509 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQA--------DQEKLRE-LLQLQ 579
Cdd:PRK04778 125 LEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQfveltesgDYVEAREiLDQLE 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 580 DKLEQQKELMEV-------------DQNQQI----------------TIIKKELAETTNQLSECQERLtvKEAQLAEIQQ 630
Cdd:PRK04778 205 EELAALEQIMEEipellkelqtelpDQLQELkagyrelveegyhldhLDIEKEIQDLKEQIDENLALL--EELDLDEAEE 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 631 QLQEVNEERTRLQEQLltkEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLlakeEQLHAKES 710
Cdd:PRK04778 283 KNEEIQERIDQLYDIL---EREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL----ESVRQLEK 355
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28571203 711 QLQSLESQLQGQLAADESQQLQQTIdgLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKE 779
Cdd:PRK04778 356 QLESLEKQYDEITERIAEQEIAYSE--LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
512-719 |
4.04e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.26 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 512 LSQLRETLQR----RDEDLKELEEQLSAVRQDLDE-----KSIQMKISQDQHKLQLANLQNQLQADQEKL-RELLQLQDK 581
Cdd:pfam05557 11 LSQLQNEKKQmeleHKRARIELEKKASALKRQLDResdrnQELQKRIRLLEKREAEAEEALREQAELNRLkKKYLEALNK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 582 LEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAK 661
Cdd:pfam05557 91 KLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQ 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28571203 662 RNQELEDQL---------LAKEQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQL 719
Cdd:pfam05557 171 RIKELEFEIqsqeqdseiVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKL 237
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
509-725 |
4.13e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.21 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 509 LEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKisqdqhKLQLANLQ----NQLQADQEKLRELLQLQDKLEQ 584
Cdd:COG0497 157 LEEYREAYRAWRALKKELEELRADEAERARELDLLRFQLE------ELEAAALQpgeeEELEEERRRLSNAEKLREALQE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 585 QKELMEVDQN---QQITIIKKEL---AETTNQLSECQERLTVKEAQLAEIQQQLQ------EVNEER-----TRLQE--Q 645
Cdd:COG0497 231 ALEALSGGEGgalDLLGQALRALerlAEYDPSLAELAERLESALIELEEAASELRryldslEFDPERleeveERLALlrR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 646 LLTKEQESgLDsELAKRNQELEDQLlakeQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAK-ESQLQSLESQLQGQLA 724
Cdd:COG0497 311 LARKYGVT-VE-ELLAYAEELRAEL----AELENSDERLEELEAELAEAEAELLEAAEKLSAArKKAAKKLEKAVTAELA 384
|
.
gi 28571203 725 A 725
Cdd:COG0497 385 D 385
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
560-675 |
4.26e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 560 NLQNQLQAD-QEKLRELLQLQDKLEQQKELMEvDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEE 638
Cdd:PRK12704 68 KLRNEFEKElRERRNELQKLEKRLLQKEENLD-RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 28571203 639 RTRLQE----QLLTKEQESGLDSELAKRNQELEDQllAKEQ 675
Cdd:PRK12704 147 ISGLTAeeakEILLEKVEEEARHEAAVLIKEIEEE--AKEE 185
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-279 |
4.28e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 1 MRDVLEHKTQLAGQVASLKQLQADRLVEHELSNARQQKQLDELRQTSSAAKKQQEELQRRVEQQEAELIEMQDLLDKRRQ 80
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 81 DTAELIERVRVAETERERLLKDLEETRQAKEKKTSESSSNSSstgkhsedefivvRQADATGSGSASGSDRdpdadvtsp 160
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE-------------DIESLAAEIEELEELI--------- 868
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 161 pskEKLRDRLVSLESQISELTLANTQLQDAQLEKQLSINMLGEQLVELEKRLRLSEAEKEQLQVNLQLRLQQLTVQNQEL 240
Cdd:TIGR02168 869 ---EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
250 260 270
....*....|....*....|....*....|....*....
gi 28571203 241 KLHAEAEQEGHAQNLEEQLGDLREDNQRLRQeLKTSIAQ 279
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRRLKR-LENKIKE 983
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
486-859 |
4.98e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 486 KLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKiSQDQHKLQLANLQNQL 565
Cdd:TIGR00606 210 KYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIK-ALKSRKKQMEKDNSEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 566 --------QADQEKLRELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNE 637
Cdd:TIGR00606 289 elkmekvfQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDS 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 638 ERTRLQEQLLTKEQESGLDSELAKRN--------------------QELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQ 697
Cdd:TIGR00606 369 LIQSLATRLELDGFERGPFSERQIKNfhtlvierqedeaktaaqlcADLQSKERLKQEQADEIRDEKKGLGRTIELKKEI 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 698 LLAKEEQLHAKESQLQSLESQLQGQLAADES-----------------QQLQQTIDGLGQEKNELIKVLQQKHQENtqyy 760
Cdd:TIGR00606 449 LEKKQEELKFVIKELQQLEGSSDRILELDQElrkaerelskaeknsltETLKKEVKSLQNEKADLDRKLRKLDQEM---- 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 761 AEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIE 840
Cdd:TIGR00606 525 EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLE 604
|
410
....*....|....*....
gi 28571203 841 ELHTQETVELQRDLEESRS 859
Cdd:TIGR00606 605 QNKNHINNELESKEEQLSS 623
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
570-779 |
5.94e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.61 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 570 EKLRELLQLQDKLEQQKELMEVDQnqqitiIKKELAETTNQLSECQERLtvKEAQLAEIQQQLQEVNEERTRLQEQLltk 649
Cdd:pfam06160 211 DQLEELKEGYREMEEEGYALEHLN------VDKEIQQLEEQLEENLALL--ENLELDEAEEALEEIEERIDQLYDLL--- 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 650 EQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLlakeEQLHAKESQLQSLESQLQGQLAADESQ 729
Cdd:pfam06160 280 EKEVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNENEL----ERVRGLEKQLEELEKRYDEIVERLEEK 355
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 28571203 730 QLQQTIdgLGQEKNELIKVLQQKHQENTQYYAEIQRLQPFEQQVKELVKE 779
Cdd:pfam06160 356 EVAYSE--LQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLDE 403
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
516-724 |
6.45e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 6.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 516 RETLQRRDEDLKELEEQLSAVRQDLDEKSIQMKISQDQhkLQLANLQNQLQADQEKLRELLQLQDKLEQQ--KELMEVDQ 593
Cdd:PTZ00108 968 ENGKIKKYSDALDILKEFYLVRLDLYKKRKEYLLGKLE--RELARLSNKVRFIKHVINGELVITNAKKKDlvKELKKLGY 1045
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 594 NQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEdQLLAK 673
Cdd:PTZ00108 1046 VRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELE-KLKNT 1124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 28571203 674 EQQlQLNQAELEKLQETLrvneEQLLAKEEQLHAKESQLQSLESQLQGQLA 724
Cdd:PTZ00108 1125 TPK-DMWLEDLDKFEEAL----EEQEEVEEKEIAKEQRLKSKTKGKASKLR 1170
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
216-934 |
6.72e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 216 EAEKEQLQVNLQLrLQQLTVQNQELKLHAEAEQEGHAQNLEEQLGDLREDNQRLRQELKTSIAQAKFRQAIAEEKQEITD 295
Cdd:TIGR00618 193 HGKAELLTLRSQL-LTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 296 LDDADSEYG------TFELDKLRALLQAEIEDRLDssfpqQKLERAWNALKDRWHRLDLVEQRLVDVQNQQLVSEHEKKT 369
Cdd:TIGR00618 272 LRAQEAVLEetqeriNRARKAAPLAAHIKAVTQIE-----QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 370 LEADISQYILQCDElmkNNDLLLNELDKYKRNKLETIEEHHEETIVQLEAQLEEARQKLELASLSSQQQMETHLISSPEK 449
Cdd:TIGR00618 347 LQTLHSQEIHIRDA---HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQ 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 450 tpVDSELLAKMEQKEQEYLQLQEQLAFAKTELDK-RNKLLERNGEQLTKQQQQNQADQKKLEELSQLRETLQRRDEDLKE 528
Cdd:TIGR00618 424 --GQLAHAKKQQELQQRYAELCAAAITCTAQCEKlEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQE 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 529 LEEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQNQLQADQEKLRELLQLQDKLEQQKELMEVDQnqqitiikkELAETT 608
Cdd:TIGR00618 502 EPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ---------EIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 609 NQLSECQERLTVKEAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQ 688
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQ 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 689 ETLrvneeqlLAKEEQLHAKESQLQSLESQLQGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYAEIQRLQ- 767
Cdd:TIGR00618 653 LTL-------TQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEn 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 768 PFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAhlleieelhtqet 847
Cdd:TIGR00618 726 ASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNR------------- 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 848 vELQRDLEESRSRQAILEQQVSKSSTAYTSASIRANQQAETLQAQHALLQQQRDELLAKLGQYEDReLKQQAALTNLQCA 927
Cdd:TIGR00618 793 -LREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEEC-SKQLAQLTQEQAK 870
|
....*..
gi 28571203 928 LEQFQND 934
Cdd:TIGR00618 871 IIQLSDK 877
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
622-709 |
7.17e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 40.41 E-value: 7.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 622 EAQLAEIQQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQETLRVNEEQLLAK 701
Cdd:smart00435 276 EKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKL 355
|
....*...
gi 28571203 702 EEQLHAKE 709
Cdd:smart00435 356 EVQATDKE 363
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
530-786 |
7.93e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 530 EEQLSAVRQDLDEksiqmkISQDQHKLQLANLQNQLQADQekLRELLQLQDKLEQQKELM-EVDQNQQITIIKKELA--- 605
Cdd:COG3096 835 EAELAALRQRRSE------LERELAQHRAQEQQLRQQLDQ--LKEQLQLLNKLLPQANLLaDETLADRLEELREELDaaq 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 606 ETTNQLSECQERLTVKEAQLAEIQ---QQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQllAKEQQLQLNQA 682
Cdd:COG3096 907 EAQAFIQQHGKALAQLEPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYE--DAVGLLGENSD 984
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 683 ELEKLQETLRVNEEQLLAKEEQLHAKESQ-------LQSLESQLQGqlAADESQQLQQTIDGLG------------QEKN 743
Cdd:COG3096 985 LNEKLRARLEQAEEARREAREQLRQAQAQysqynqvLASLKSSRDA--KQQTLQELEQELEELGvqadaeaeerarIRRD 1062
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 28571203 744 ELIKVLQQKHQENTQYYAEIQRLQ-PFEQQVKELVKEREKLQDQ 786
Cdd:COG3096 1063 ELHEELSQNRSRRSQLEKQLTRCEaEMDSLQKRLRKAERDYKQE 1106
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
605-733 |
8.16e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.03 E-value: 8.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 605 AETTNQLSECQERLTVKEAQLAEIQQQLqEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAEL 684
Cdd:COG1566 79 TDLQAALAQAEAQLAAAEAQLARLEAEL-GAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAAL 157
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 28571203 685 EKLQETLRVNEEQLLAKEEQLhAKESQLQSLESQLQGQLAADESQQLQQ 733
Cdd:COG1566 158 DAAQAQLEAAQAQLAQAQAGL-REEEELAAAQAQVAQAEAALAQAELNL 205
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
595-970 |
8.25e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 595 QQITIIKKELAETTNQLSECQERLTvkeaqlaEIQQQLQEVNEERTRLQEqlltkeqesglDSELAKRNQELEDQLLAKE 674
Cdd:PRK04863 286 EEALELRRELYTSRRQLAAEQYRLV-------EMARELAELNEAESDLEQ-----------DYQAASDHLNLVQTALRQQ 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 675 QQLQLNQAELEKLQETLrvnEEQLLAKE---EQLHAKESQLQSLES---QLQGQLAadesqQLQQTIDglgqeknelikv 748
Cdd:PRK04863 348 EKIERYQADLEELEERL---EEQNEVVEeadEQQEENEARAEAAEEevdELKSQLA-----DYQQALD------------ 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 749 LQQKhqENTQYYAEIQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLteQTNQRLLQQQQAESQ--------- 819
Cdd:PRK04863 408 VQQT--RAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELL--SLEQKLSVAQAAHSQfeqayqlvr 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 820 ------------EQQASTLRDLERLRAHLLEIEELHtQETVELQRDLEESRSRQAILEQQVSKSSTAYTSAS------IR 881
Cdd:PRK04863 484 kiagevsrseawDVARELLRRLREQRHLAEQLQQLR-MRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDeleqlqEE 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 882 ANQQAETLQAQHALLQQQRDELLAKLGQYEDR--ELKQQA-ALTNLQCALEQFQNDKDHDIEMAtQRIRREMQAQLDRQG 958
Cdd:PRK04863 563 LEARLESLSESVSEARERRMALRQQLEQLQARiqRLAARApAWLAAQDALARLREQSGEEFEDS-QDVTEYMQQLLERER 641
|
410
....*....|..
gi 28571203 959 QLQLEMSGLQQQ 970
Cdd:PRK04863 642 ELTVERDELAAR 653
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
461-684 |
8.81e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 8.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 461 EQKEQEYL--------QLQEQLAFAKTELDKRNKLLERNGEQltKQQQQNQADQKKLEELSQLRETLQRRDEDLKELEEQ 532
Cdd:PRK05771 38 EELSNERLrklrslltKLSEALDKLRSYLPKLNPLREEKKKV--SVKSLEELIKDVEEELEKIEKEIKELEEEISELENE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 533 LSAVRQDLDEKSIQMKISQDqhklqLANLQN---------QLQADQEKLRELLQLQDKLEQQKELME------VDQNQQI 597
Cdd:PRK05771 116 IKELEQEIERLEPWGNFDLD-----LSLLLGfkyvsvfvgTVPEDKLEELKLESDVENVEYISTDKGyvyvvvVVLKELS 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 598 TIIKKELAETTNQLSECQERLTVKEAqLAEIQQQLQEVNEERTRLQEqlltkeqesgldsELAKRNQELEDQLLAKEQQL 677
Cdd:PRK05771 191 DEVEEELKKLGFERLELEEEGTPSEL-IREIKEELEEIEKERESLLE-------------ELKELAKKYLEELLALYEYL 256
|
....*....
gi 28571203 678 --QLNQAEL 684
Cdd:PRK05771 257 eiELERAEA 265
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
416-793 |
9.03e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 416 QLEAQLEEARQKLELASLSSQQQmethlisspEKTPVDSELLAKMEQKEQEYLQLQEQLAFAKTELDKRNKL--LERNGE 493
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLES---------ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELetLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 494 QLTKQQQQNQADQKKL-EELSQLRETLQRRDEDLKEL----------EEQLSAVRQDLDEKSIQMKISQDQHKLQLANLQ 562
Cdd:PRK02224 262 DLRETIAETEREREELaEEVRDLRERLEELEEERDDLlaeaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 563 NQLQADQEKLRELLQLQDKLEQQKELMEVD---QNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQQLQEVNEER 639
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELESEleeAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 640 TRLQEQLLT-------------------------------------------KEQESGLDSELAKRNQELE--DQLLAKE 674
Cdd:PRK02224 422 DELREREAEleatlrtarerveeaealleagkcpecgqpvegsphvetieedRERVEELEAELEDLEEEVEevEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 675 QQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQSLESQLQG-QLAADESQQLQQTIDGLGQEKNELIKVLQQKH 753
Cdd:PRK02224 502 EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAElEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 28571203 754 QENTQyyaEIQRLqpfeQQVKELVKEREKLQDQVGFLKEK 793
Cdd:PRK02224 582 AELKE---RIESL----ERIRTLLAAIADAEDEIERLREK 614
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
574-900 |
9.09e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 574 ELLQLQDKLEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEIQQ----------QLQEVNEERTRLQ 643
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEleeeyllyldYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 644 EQLLTKEQESGLDSELAKRNQELEDQLLAK----EQQLQLNQAELEKLQETLRVNEEQLLAKEEQLHAKESQLQslESQL 719
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKEnkeeEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK--ESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 720 QGQLAADESQQLQQTIDGLGQEKNELIKVLQQKHQENTQYYaeiQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTT 799
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELE---KLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28571203 800 NLLTEQTNQRLLQQQQAESQEQQASTLRDLERLRAHLLEIEELHTQETVELQRDLEESRSRQAILEQQVSKSSTAYTSAS 879
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
330 340
....*....|....*....|.
gi 28571203 880 IRANQQAETLQAQHALLQQQR 900
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERS 499
|
|
| |
