|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
10-318 |
1.90e-23 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 102.69 E-value: 1.90e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 10 SEKAELQELNARLYDYVCRVRE-LERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAEGERDAL 88
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFlEQQNKLLETKISELRQKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 89 RRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLTMHFRA 168
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 169 RATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQALRRGQesrlqaeDEARLCAQEADALRN--QAL--EL 244
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNG-------DALRSAKEEITELRRtiQSLeiEL 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 153792766 245 EQLR---ARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRLRDYQELLQVKTGLSLEVATYRALLEGE 318
Cdd:pfam00038 234 QSLKkqkASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGE 310
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-316 |
1.38e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAE-DQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAA 129
Cdd:COG1196 234 LRELEaELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 130 LEALLGRLETERRDLDAAHERQVRDLRARAASLTMhfraratspaappprlrdvhdsyALLVAESWRESVQLYEDEVREL 209
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEE-----------------------AEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 210 EQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMAD 289
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260
....*....|....*....|....*..
gi 153792766 290 RLRDYQELLQVKTGLSLEVATYRALLE 316
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEA 477
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
5-322 |
5.81e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 5.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 5 RLQTGSEKAELQELNARLYdyvcrvrelerenllleeelrSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAEGE 84
Cdd:COG1196 273 RLELEELELELEEAQAEEY---------------------ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 85 RDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLTM 164
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 165 HFRARATSPAAppprlrdvhdsyallvAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALEL 244
Cdd:COG1196 412 LLERLERLEEE----------------LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 153792766 245 EQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRL-RDYQELLQVKTGLSLEVATYRALLEGESNPE 322
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLaGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-323 |
2.04e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 57 QALYAEEARSLRQQLDELNWSTALA--EGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALL 134
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELArlEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 135 GRLETERRDLDAAHERQVRDLRARAASLTMHFRARATspaappprlrdvhdsyALLVAESWRESVQLYEDEVRELEQALR 214
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE----------------ALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 215 RGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREeygmQAEERQRVIDSLEDEKEALTLAMADRLRDY 294
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE----LLAELLEEAALLEAALAELLEELAEAAARL 493
|
250 260
....*....|....*....|....*....
gi 153792766 295 QELLQVKTGLSLEVATYRALLEGESNPEI 323
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
54-337 |
9.42e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 9.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 54 AEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLEL------------QREGVEAGTARSRLDAELGAQRRELE 121
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAaarllllleaeaDYEGFLEGVKAALLLAGLRGLAGAVA 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 122 EALG----ARAALEALLGRLETE--RRDLDAAHERQVRDLRARAASLT------MHFRARATSPAAPPPRLRDVHDSYAL 189
Cdd:COG1196 528 VLIGveaaYEAALEAALAAALQNivVEDDEVAAAAIEYLKAAKAGRATflpldkIRARAALAAALARGAIGAAVDLVASD 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 190 LVAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEygmQAEER 269
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA---ELEEL 684
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 153792766 270 QRVIDSLEDEKEALTLAMADRLRDYQELLQVKTGLSLEVATYRALLEGESNPEILIWTENIENVPQEP 337
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
54-319 |
9.43e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 9.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 54 AEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELlelqregveagtarSRLDAELGAQRRELEEALGARAALEAL 133
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL--------------AALERRIAALARRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 134 LGRLETERRDLDAAHERQVRDLRARAASLTMHFRaratspaAPPPRLrdvhdsyaLLVAESWRESV---QLYEDEVRELE 210
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLGR-------QPPLAL--------LLSPEDFLDAVrrlQYLKYLAPARR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 211 QALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELlrmreeygmqaEERQRVIDSLEDEKEALTLAMADR 290
Cdd:COG4942 150 EQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALK-----------AERQKLLARLEKELAELAAELAEL 218
|
250 260
....*....|....*....|....*....
gi 153792766 291 LRDYQELLQVKTGLSLEVATYRALLEGES 319
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
12-577 |
1.28e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 12 KAELQELNARLYdyVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRE 91
Cdd:COG1196 219 KEELKELEAELL--LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 92 LLELQREGVEAGTARSRLD---AELGAQRRELEEAL-GARAALEALLGRLETERRDLDAAhERQVRDLRARAASLTMHFR 167
Cdd:COG1196 297 LARLEQDIARLEERRRELEerlEELEEELAELEEELeELEEELEELEEELEEAEEELEEA-EAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 168 ARATSpaappprlrdvhdsyallvAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQL 247
Cdd:COG1196 376 EAEEE-------------------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 248 RARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTL---AMADRLRDYQELLQVKTGLSLEVATYRALLEGESNPEIL 324
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALleaALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 325 IWTENIENVPQEPRNTSYRYtnsvlqrkneknlfprrktpWAAVNHSSASYSNWPGHLDSQTTTAVGSAARRGLLTSRHS 404
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAY--------------------EAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 405 SSATTSGQQKPLEKTISSRANLRPVTpTHGFLRNTDAQMKTLPHRSKVEGTGDTHARRATESVITRESYRGHQghVAAGA 484
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVD-LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE--VTLEG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 485 VSSTPSNERTVILGKKLEAQATKEQERDRSGVIRIKPEEKMFDSKEKASEERNLRWEELTKLDRDARKRESRHLRDEARE 564
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
570
....*....|...
gi 153792766 565 KEALKERSVKERE 577
Cdd:COG1196 734 REELLEELLEEEE 746
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
54-255 |
1.76e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 54 AEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREgvEAGTARSRLDAELGAQRRELEEALGARAALEAL 133
Cdd:COG4913 240 AHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLW--FAQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 134 LGRLETERRDLDAAH-----------ERQVRDLRARAASLTMH---FRARATSPAAPPPrlrDVHDSYALLVAEsWRESV 199
Cdd:COG4913 318 LDALREELDELEAQIrgnggdrleqlEREIERLERELEERERRrarLEALLAALGLPLP---ASAEEFAALRAE-AAALL 393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 200 QLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQAL----ELEQLRARLEDEL 255
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSnipaRLLALRDALAEAL 453
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
60-261 |
1.91e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 1.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 60 YAEEARSLRQQLDELN-----WSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALE-AL 133
Cdd:COG4913 260 LAERYAAARERLAELEylraaLRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDR 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 134 LGRLETERRDLDAAHERQVRDLRAraasltmhFRARATSPAAPPPrlrdvhdsyalLVAESWRESVQLYEDEVRELEQAL 213
Cdd:COG4913 340 LEQLEREIERLERELEERERRRAR--------LEALLAALGLPLP-----------ASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 153792766 214 RRGQESRLQAEDEARLCAQEADALRNqalELEQLRAR---LEDELLRMREE 261
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEA---EIASLERRksnIPARLLALRDA 448
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
54-299 |
4.53e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 54 AEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEAL 133
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 134 LGRLETERrdldAAHERQVRDLRARAASLTMhfraratspaapppRLRDVHDSYA--LLVAESWRESVQLYEDEVRELEQ 211
Cdd:TIGR02168 784 IEELEAQI----EQLKEELKALREALDELRA--------------ELTLLNEEAAnlRERLESLERRIAATERRLEDLEE 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 212 ALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRV---IDSLEDEKEALTLAMA 288
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELeskRSELRRELEELREKLA 925
|
250
....*....|.
gi 153792766 289 DRLRDYQELLQ 299
Cdd:TIGR02168 926 QLELRLEGLEV 936
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
58-316 |
4.84e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 58 ALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEalgaraaLEALLGRL 137
Cdd:TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA-------LANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 138 ETERRDLDAAHERQVRDLRARAASLTMHFRARatspaappprlrdvhDSYALLVAEsWRESVQLYEDEVRELEQALRRGQ 217
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKL---------------DELAEELAE-LEEKLEELKEELESLEAELEELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 218 ESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRL-RDYQE 296
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELqAELEE 444
|
250 260
....*....|....*....|
gi 153792766 297 LLQVKTGLSLEVATYRALLE 316
Cdd:TIGR02168 445 LEEELEELQEELERLEEALE 464
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
58-262 |
9.15e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 9.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 58 ALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQR------EGVEAGTARSRLdAELGAQRRELEEALGARAALE 131
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswDEIDVASAEREI-AELEAELERLDASSDDLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 132 ALLGRLETERRDLdaahERQVRDLRARAAsltmhfraratspaapppRLRDVHDSYALLVAESWRESVQLYEDEVRELEQ 211
Cdd:COG4913 692 EQLEELEAELEEL----EEELDELKGEIG------------------RLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 153792766 212 ALrrgqESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEY 262
Cdd:COG4913 750 LL----EERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF 796
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
49-318 |
4.58e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 54.64 E-value: 4.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 49 REDRWAE--------DQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRREL 120
Cdd:COG3903 563 EGRRWLEralaaageAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAA 642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 121 EEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQ 200
Cdd:COG3903 643 AAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAA 722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 201 LYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEK 280
Cdd:COG3903 723 AAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAA 802
|
250 260 270
....*....|....*....|....*....|....*...
gi 153792766 281 EALTLAMADRLRDYQELLQVKTGLSLEVATYRALLEGE 318
Cdd:COG3903 803 AAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAA 840
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
5-254 |
6.35e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 6.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 5 RLQTGSEKAELQELNARLYDYVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAEGE 84
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 85 RDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLTm 164
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 165 hfraratspaapPPRLRDVHDSyallVAESWRESVQLYEdEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALEL 244
Cdd:TIGR02168 432 ------------EAELKELQAE----LEELEEELEELQE-ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
250
....*....|
gi 153792766 245 EQLRARLEDE 254
Cdd:TIGR02168 495 ERLQENLEGF 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
67-289 |
1.24e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 67 LRQQLDELNWSTALAEgERDALRRELLE-----LQREGVEAGTARSRLDAELGAQRRELE------EALGARaaLEALLG 135
Cdd:TIGR02169 196 KRQQLERLRREREKAE-RYQALLKEKREyegyeLLKEKEALERQKEAIERQLASLEEELEklteeiSELEKR--LEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 136 RLETERRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWResvqlYEDEVRELEQALRR 215
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK-----LLAEIEELEREIEE 347
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 153792766 216 GQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEER---QRVIDSLEDEKEALTLAMAD 289
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREInelKRELDRLQEELQRLSEELAD 424
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-283 |
1.39e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLE----LQREGVEAGTARSRLDAELGAQRRELEEALGA 126
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavdlVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 127 RAALEALLGRLETERRDLDAAHERQVRDLRARAASLTMHFRARATspaappprlrdvhDSYALLVAESWRESVQLYEDEV 206
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE-------------LEELAERLAEEELELEEALLAE 702
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 153792766 207 RELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEAL 283
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
61-290 |
1.52e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 61 AEEARSLRQQLDEL--NWSTALAEGERDALRRELLELQREGVEA--GTARSRLDAELGAQRRELEEALGARAALEALLGR 136
Cdd:PRK02224 278 AEEVRDLRERLEELeeERDDLLAEAGLDDADAEAVEARREELEDrdEELRDRLEECRVAAQAHNEEAESLREDADDLEER 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 137 ---LETERRDLDA---AHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAE--SWRESVQLYEDEVRE 208
Cdd:PRK02224 358 aeeLREEAAELESeleEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREErdELREREAELEATLRT 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 209 LEQALRRGQesRLQAEDEARLCAQE------ADAL---RNQALELEQLRARLEDEL--LRMREEYGMQAEERQRVIDSLE 277
Cdd:PRK02224 438 ARERVEEAE--ALLEAGKCPECGQPvegsphVETIeedRERVEELEAELEDLEEEVeeVEERLERAEDLVEAEDRIERLE 515
|
250
....*....|...
gi 153792766 278 DEKEALTLAMADR 290
Cdd:PRK02224 516 ERREDLEELIAER 528
|
|
| FUSC |
pfam04632 |
Fusaric acid resistance protein family; This family includes a conserved region found in two ... |
85-311 |
3.41e-06 |
|
Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.
Pssm-ID: 428044 [Multi-domain] Cd Length: 655 Bit Score: 51.52 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 85 RDALRRELLELQREGVEAgtARSRLDAELGAQRRE--LEEALGARAALEALLGRLETERRDLdAAHERQVRDLRARAASL 162
Cdd:pfam04632 154 GPALRARLRARLRDALRL--AAAALAGAPGAEAFEaaRLRLAADILALEALRSHAAFESPRG-RARARALRRLLARMLAL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 163 TMHFRA----RATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQALRrgqesRLQAEDEARLCAQEAdalr 238
Cdd:pfam04632 231 LPRLRSlarlLARLRTEGAGTVPELAALLDELAAWEAALAAEALQAALAALRARLR-----ALRPALPLDFDTAAE---- 301
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 153792766 239 nqaleleqLRARLEDELLRMREEYGMQAEERQRVidslEDEKEALTLAMAdrlRDYQELLQ--VKTGLSLEVATY 311
Cdd:pfam04632 302 --------LLARLADLLAELAEALASCRALRHPI----AQGARPARLARH---RDHGAALLngLRAALAILLAGA 361
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
51-261 |
3.64e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAEEARSLRQQLDELNWSTALAEGERD--ALRRELLELQREgveagtaRSRLDA---ELGAQRRELEEALG 125
Cdd:COG4913 627 AEAEERLEALEAELDALQERREALQRLAEYSWDEIDvaSAEREIAELEAE-------LERLDAssdDLAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 126 ARAALEALLGRLETERRDLDAAHER---QVRDLRARAASLTMHFRARATSPAAppPRLRDVH-DSYALLVAESWRESVQL 201
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQaeeELDELQDRLEAAEDLARLELRALLE--ERFAAALgDAVERELRENLEERIDA 777
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 153792766 202 YEDEVRELEQALRRGQES-RLQAEDEARLCAQEADALRNQALELEQLRA----RLEDELLRMREE 261
Cdd:COG4913 778 LRARLNRAEEELERAMRAfNREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFKELLNE 842
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
90-304 |
5.69e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 5.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 90 RELLELQregvEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAA---HERQVRDLRARAAsltmhf 166
Cdd:COG1579 7 RALLDLQ----ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEikrLELEIEEVEARIK------ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 167 RARAtspaapppRLRDVHDSyallvaeswREsvqlYEDEVRELEQALRRgqesRLQAEDEARLCAQEADALRNQALELEQ 246
Cdd:COG1579 77 KYEE--------QLGNVRNN---------KE----YEALQKEIESLKRR----ISDLEDEILELMERIEELEEELAELEA 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 153792766 247 LRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRLRD-YQELLQVKTGL 304
Cdd:COG1579 132 ELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLAlYERIRKRKNGL 190
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
61-287 |
8.13e-06 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 49.68 E-value: 8.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 61 AEEARSLRQQLDELNWSTALAEGERDALRRELLELQREG------VEAGTARSrldAELGAQRRELEEALGA-RAALEAL 133
Cdd:pfam19220 138 EEENKALREEAQAAEKALQRAEGELATARERLALLEQENrrlqalSEEQAAEL---AELTRRLAELETQLDAtRARLRAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 134 LGRL---ETERRDLDAAHERQVRDLRARAASLTMHFRArATSPAAPPPRLrdvhdsyallVAESwRESVQLYEDEVRELE 210
Cdd:pfam19220 215 EGQLaaeQAERERAEAQLEEAVEAHRAERASLRMKLEA-LTARAAATEQL----------LAEA-RNQLRDRDEAIRAAE 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 211 QALRRGQESRLQAEdeARLCAQEADALR--NQALELEQLRARLED------ELLRMREEYGMQAEERqrvIDSLEDEKEA 282
Cdd:pfam19220 283 RRLKEASIERDTLE--RRLAGLEADLERrtQQFQEMQRARAELEEraemltKALAAKDAALERAEER---IASLSDRIAE 357
|
....*
gi 153792766 283 LTLAM 287
Cdd:pfam19220 358 LTKRF 362
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
52-261 |
1.33e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 52 RWAE-DQALYAEEARSLRQQLDEL---NWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGA---QRRELEEAL 124
Cdd:COG4913 657 SWDEiDVASAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQaeeELDELQDRL 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 125 GARAALEALLGRLETERR----DLDAAHERQVRDLRARAASL-TMHFRARAtspaapppRLRDVHDSYallvAESWRESV 199
Cdd:COG4913 737 EAAEDLARLELRALLEERfaaaLGDAVERELRENLEERIDALrARLNRAEE--------ELERAMRAF----NREWPAET 804
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 153792766 200 QLYEDEVRELEQALRRGQesRLQAEDEARLCAQEADALRNQALE-LEQLRARLEDELLRMREE 261
Cdd:COG4913 805 ADLDADLESLPEYLALLD--RLEEDGLPEYEERFKELLNENSIEfVADLLSKLRRAIREIKER 865
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
111-300 |
2.02e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 111 AELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLTMHfRARAtSPAAPPPRLRDVHDSYALL 190
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELE-ALEA-ELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 191 vaESWRESVQLYEDEVRELEQALRR-GQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELlrmreeygmqaEER 269
Cdd:COG4717 159 --RELEEELEELEAELAELQEELEElLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL-----------EEL 225
|
170 180 190
....*....|....*....|....*....|.
gi 153792766 270 QRVIDSLEDEKEAltLAMADRLRDYQELLQV 300
Cdd:COG4717 226 EEELEQLENELEA--AALEERLKEARLLLLI 254
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
4-316 |
2.09e-05 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 48.81 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 4 WRLQTGSEKAELQELNARLYDYVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQLDELNWSTALAEG 83
Cdd:COG4995 143 AAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 84 ERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLRARAASLT 163
Cdd:COG4995 223 LALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALAL 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 164 MHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALE 243
Cdd:COG4995 303 LLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEAL 382
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 153792766 244 LEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRLRDYQ--ELLQVKTGLSLEVATYRALLE 316
Cdd:COG4995 383 LLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALLAliEYIILPDRLYAFVQLYQLLIA 457
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
99-316 |
2.14e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 99 GVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERR-----------DLD-AAHERQVRDLRARAASLTmhf 166
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREalqrlaeyswdEIDvASAEREIAELEAELERLD--- 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 167 raratspaAPPPRLRDVHDSYALLVAE--SWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALEl 244
Cdd:COG4913 682 --------ASSDDLAALEEQLEELEAEleELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE- 752
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 153792766 245 EQLRARLEDELLR-MREEYgmqAEERQRVIDSLEDEKEALTLAMADRLRDYQELLQvktGLSLEVAT---YRALLE 316
Cdd:COG4913 753 ERFAAALGDAVEReLRENL---EERIDALRARLNRAEEELERAMRAFNREWPAETA---DLDADLESlpeYLALLD 822
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
51-289 |
2.27e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQRE--GVEAGtaRSRLDAELGAQRRELEEALGA-- 126
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaSLERR--KSNIPARLLALRDALAEALGLde 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 127 -------------------RAALEALLGrleTERRDL--DAAHERQVRD-LRARAASLTMHF-RARATSPAAPPPRLRDv 183
Cdd:COG4913 458 aelpfvgelievrpeeerwRGAIERVLG---GFALTLlvPPEHYAAALRwVNRLHLRGRLVYeRVRTGLPDPERPRLDP- 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 184 hDSYA--LLVAES-WRESVQLY------------EDEVRELEQAL-RRGQ--------------------------ESRL 221
Cdd:COG4913 534 -DSLAgkLDFKPHpFRAWLEAElgrrfdyvcvdsPEELRRHPRAItRAGQvkgngtrhekddrrrirsryvlgfdnRAKL 612
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 153792766 222 QA-EDEARLCAQEADALRNQALELEQLRARLED--ELLRMREEYGMQ---AEERQRVIDSLEDEKEALTLAMAD 289
Cdd:COG4913 613 AAlEAELAELEEELAEAEERLEALEAELDALQErrEALQRLAEYSWDeidVASAEREIAELEAELERLDASSDD 686
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
58-292 |
2.49e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 58 ALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRL 137
Cdd:TIGR02169 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 138 ETERRDLdaahERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQL---------YEDEVRE 208
Cdd:TIGR02169 363 KEELEDL----RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELadlnaaiagIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 209 LEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGmQAEERQRVIDSLEDEKEALTLAMA 288
Cdd:TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLK 517
|
....
gi 153792766 289 DRLR 292
Cdd:TIGR02169 518 ASIQ 521
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
62-316 |
2.61e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 62 EEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVE-AGTARSRLDAELGAQRRELEEALGARAALEALLGRLETE 140
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQdLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 141 RRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQALRRGQESR 220
Cdd:COG4717 236 LEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 221 LQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREeygMQAEERQRVIDSLEDEKEALT-----------LAMAD 289
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE---AEELEEELQLEELEQEIAALLaeagvedeeelRAALE 392
|
250 260
....*....|....*....|....*..
gi 153792766 290 RLRDYQELLQVKTGLSLEVATYRALLE 316
Cdd:COG4717 393 QAEEYQELKEELEELEEQLEELLGELE 419
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
62-336 |
3.29e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 3.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 62 EEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLG--RLET 139
Cdd:TIGR02169 716 RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsRIPE 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 140 ERRDLDAAhERQVRDLRARAASLTMhfraratspaapppRLRDVHDSYALLvaeswRESVQLYEDEVRELEqaLRRGQES 219
Cdd:TIGR02169 796 IQAELSKL-EEEVSRIEARLREIEQ--------------KLNRLTLEKEYL-----EKEIQELQEQRIDLK--EQIKSIE 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 220 RLQAEDEARLCAQEADALRNQAlELEQLRARLEDeLLRMREEYGMQAEERQRVIDSLEdekealtlAMADRLRDYQELLQ 299
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEA-ALRDLESRLGD-LKKERDELEAQLRELERKIEELE--------AQIEKKRKRLSELK 923
|
250 260 270
....*....|....*....|....*....|....*....
gi 153792766 300 VKTG-LSLEVATY-RALLEGESNPEILIWTENIENVPQE 336
Cdd:TIGR02169 924 AKLEaLEEELSEIeDPKGEDEEIPEEELSLEDVQAELQR 962
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
62-289 |
3.60e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 62 EEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEAllgRLETER 141
Cdd:PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELED---RDEELR 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 142 RDLD------AAHERQVRDLRARAASLtmhfRARATSPAAPPPRLRDVHDSYALLVAESwRESVQLYEDEVRELEQALRR 215
Cdd:PRK02224 328 DRLEecrvaaQAHNEEAESLREDADDL----EERAEELREEAAELESELEEAREAVEDR-REEIEELEEEIEELRERFGD 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 216 GQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMRE--------EYGMQAEERQRV--IDSLEDEKEALTL 285
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpECGQPVEGSPHVetIEEDRERVEELEA 482
|
....
gi 153792766 286 AMAD 289
Cdd:PRK02224 483 ELED 486
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
62-298 |
3.69e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 62 EEARSLRQQLDELNWSTALAEGERDALRRELlelQREGVEAGTARSRLDaELGAQRRELEEALG-ARAALEALLGRLETE 140
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELESEL---EEAREAVEDRREEIE-ELEEEIEELRERFGdAPVDLGNAEDFLEEL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 141 RRDLDAAHERqVRDLRARAASLTMHFR-ARATSPAAPPPRL-RDVHDSYALLVAESWRESVQLYEDEVRELE-------- 210
Cdd:PRK02224 418 REERDELRER-EAELEATLRTARERVEeAEALLEAGKCPECgQPVEGSPHVETIEEDRERVEELEAELEDLEeeveevee 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 211 ---------QALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRAR---LEDELLRMRE---EYGMQAEERQRVIDS 275
Cdd:PRK02224 497 rleraedlvEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERaaeLEAEAEEKREaaaEAEEEAEEAREEVAE 576
|
250 260
....*....|....*....|...
gi 153792766 276 LEDEKEALTLAMaDRLRDYQELL 298
Cdd:PRK02224 577 LNSKLAELKERI-ESLERIRTLL 598
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
129-316 |
4.85e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 4.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 129 ALEALLGRLETERRDLDAAHErQVRDLRARAASLTmhfraratspaapppRLRDVHDSYA-----LLVAESWRESVQLYE 203
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHE-ALEDAREQIELLE---------------PIRELAERYAaarerLAELEYLRAALRLWF 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 204 DE--VRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRA--------RLEDELLRMREEygmqAEERQRVI 273
Cdd:COG4913 286 AQrrLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggdrleQLEREIERLERE----LEERERRR 361
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 153792766 274 DSLEDEKEALTLAMADRLRDYQELLQVKTGLSLEVATYRALLE 316
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALE 404
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
86-316 |
6.60e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 86 DALRRELLELQREgvEAGTARSRLDAELGAQRRELEEALGARAAL-------------EALLGRLETERRDLDAAhERQV 152
Cdd:COG3206 159 EAYLEQNLELRRE--EARKALEFLEEQLPELRKELEEAEAALEEFrqknglvdlseeaKLLLQQLSELESQLAEA-RAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 153 RDLRARAASLTmhfRARATSPAAPPPRLRDvhdsyallvaeswrESVQLYEDEVRELEQALRRgQESRLQAEDEARLcaq 232
Cdd:COG3206 236 AEAEARLAALR---AQLGSGPDALPELLQS--------------PVIQQLRAQLAELEAELAE-LSARYTPNHPDVI--- 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 233 eadALRNQaleLEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALT---LAMADRLRDYQELLQvktglslEVA 309
Cdd:COG3206 295 ---ALRAQ---IAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEarlAELPELEAELRRLER-------EVE 361
|
....*..
gi 153792766 310 TYRALLE 316
Cdd:COG3206 362 VARELYE 368
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
126-320 |
9.00e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 9.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 126 ARAALEALLGRLETERRDLDAAhERQVRDLRARAAsltmhfraratspaapppRLRDVHDSYALLVAESWRE-SVQLYED 204
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEA-EERLEALEAELD------------------ALQERREALQRLAEYSWDEiDVASAER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 205 EVRELEQALRRGQESRL---QAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEygmQAEERQRVIDSLEDEKE 281
Cdd:COG4913 669 EIAELEAELERLDASSDdlaALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE---LDELQDRLEAAEDLARL 745
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 153792766 282 ALTLAMADRLRDYQE---LLQVKTGLSLEVATYRALLEGESN 320
Cdd:COG4913 746 ELRALLEERFAAALGdavERELRENLEERIDALRARLNRAEE 787
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
52-319 |
1.16e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 46.55 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 52 RWAEDQALYAEEARSLRQQLDEL-NWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAAL 130
Cdd:COG3903 503 ERAAAELRGPDQLAWLARLDAEHdNLRAALRWALAHGDAELALRLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAAL 582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 131 EALLGRLETERRDLDAAHERQVRDLRARAAS----LTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEV 206
Cdd:COG3903 583 AAAAALAAAAAAARAAAAAAAAAAAAAAAAAaaaaAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 207 RELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLA 286
Cdd:COG3903 663 AAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAA 742
|
250 260 270
....*....|....*....|....*....|...
gi 153792766 287 MADRLRDYQELLQVKTGLSLEVATYRALLEGES 319
Cdd:COG3903 743 AALALAAAAAAAAAAAAAAALAAAAAAAALAAL 775
|
|
| Metal_resist |
pfam13801 |
Heavy-metal resistance; This is a metal-binding protein which is involved in resistance to ... |
79-157 |
2.19e-04 |
|
Heavy-metal resistance; This is a metal-binding protein which is involved in resistance to heavy-metal ions. The protein forms a four-helix hooked hairpin, consisting of two long alpha helices each flanked by a shorter alpha helix. It binds a metal ion in a type-2 like centre. It contains two copies of an LTXXQ motif.
Pssm-ID: 433488 [Multi-domain] Cd Length: 119 Bit Score: 42.28 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 79 ALAEGERDALRRELLELQREgveagtaRSRLDAELGAQRRELEEALGA----RAALEALLGRLETERRDLDAAHERQVRD 154
Cdd:pfam13801 38 GLPAEQRERLRAALRDHARE-------LRALRRELRAARRELAALLAAppfdPAAIEAALAEARQARAALQAQIEEALLE 110
|
...
gi 153792766 155 LRA 157
Cdd:pfam13801 111 FAA 113
|
|
| DUF3450 |
pfam11932 |
Protein of unknown function (DUF3450); This family of proteins are functionally ... |
193-316 |
2.55e-04 |
|
Protein of unknown function (DUF3450); This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.
Pssm-ID: 432198 [Multi-domain] Cd Length: 238 Bit Score: 44.14 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 193 ESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYG--------M 264
Cdd:pfam11932 37 DKWDDEKQELLAEYRALKAELESLEVYNRQLERLVASQEQEIASLERQIEEIERTERELVPLMLKMLDRLEqfvaldlpF 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 153792766 265 QAEERQRVIDSLEDEKEALTLAMADRLRDYQELLQVKTGLSLEVATYRALLE 316
Cdd:pfam11932 117 LLEERQARLARLRELMDDADVSLAEKYRRILEAYQVEAEYGRTIEVYQGELE 168
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
12-332 |
3.55e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 12 KAELQELNAR---LYDYVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEA-RSLRQQLDELNWSTALAEGERDA 87
Cdd:COG4717 138 EAELAELPERleeLEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 88 LRRELLELQREgvEAGTARSRLDAELGAQRRELEEALGARAALEALLG--------------------------RLETER 141
Cdd:COG4717 218 AQEELEELEEE--LEQLENELEAAALEERLKEARLLLLIAAALLALLGlggsllsliltiagvlflvlgllallFLLLAR 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 142 RDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQALRRGQESRL 221
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 222 QA------EDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERqrvidsLEDEKEALTLAMADRLRDYQ 295
Cdd:COG4717 376 LAeagvedEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE------LEEELEELEEELEELEEELE 449
|
330 340 350
....*....|....*....|....*....|....*..
gi 153792766 296 ELLQVKTGLSLEVatyRALLEGESNPEILIWTENIEN 332
Cdd:COG4717 450 ELREELAELEAEL---EQLEEDGELAELLQELEELKA 483
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
57-162 |
3.58e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.19 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 57 QALYAEEARS--LRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGAR------- 127
Cdd:PRK09039 67 DLLSLERQGNqdLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVellnqqi 146
|
90 100 110
....*....|....*....|....*....|....*
gi 153792766 128 AALEALLGRLETErrdLDAAHERQvRDLRARAASL 162
Cdd:PRK09039 147 AALRRQLAALEAA---LDASEKRD-RESQAKIADL 177
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
51-297 |
4.27e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 44.68 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAE------EARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGtarsrldaelgaqrrELEEal 124
Cdd:COG0497 148 DAFAGLEELLEEyreayrAWRALKKELEELRADEAERARELDLLRFQLEELEAAALQPG---------------EEEE-- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 125 garaaleallgrLETERRDLDAAHErqvrdLRARAASLTMHFRARATSPAAppprlrdvhdsyALLVAESWRESVQLYED 204
Cdd:COG0497 211 ------------LEEERRRLSNAEK-----LREALQEALEALSGGEGGALD------------LLGQALRALERLAEYDP 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 205 EVRELEQALrrgQESRLQAEDEARLCAQEADALRNQALELEQLRARLeDELLRMREEYGMQAEE--------RQRV--ID 274
Cdd:COG0497 262 SLAELAERL---ESALIELEEAASELRRYLDSLEFDPERLEEVEERL-ALLRRLARKYGVTVEEllayaeelRAELaeLE 337
|
250 260
....*....|....*....|...
gi 153792766 275 SLEDEKEALTLAMADRLRDYQEL 297
Cdd:COG0497 338 NSDERLEELEAELAEAEAELLEA 360
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3-261 |
6.00e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 3 SWRLQTGSEKAELQELNARLYDYVCRVRELERENLLLEEELRSRLSREDRWAEDQALYAEEARSLRQQLDElnwstalae 82
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE--------- 870
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 83 gerdaLRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERqvrdLRARAASL 162
Cdd:TIGR02168 871 -----LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG----LEVRIDNL 941
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 163 TMHFRARATSPAAPPPRLrdvhdsYALLVAESwresvQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQAL 242
Cdd:TIGR02168 942 QERLSEEYSLTLEEAEAL------ENKIEDDE-----EEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE 1010
|
250
....*....|....*....
gi 153792766 243 ELEQLRARLEDELLRMREE 261
Cdd:TIGR02168 1011 DLTEAKETLEEAIEEIDRE 1029
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
87-166 |
9.16e-04 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 41.46 E-value: 9.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 87 ALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDA---AHERQVRDLRARAASLT 163
Cdd:pfam08614 61 QLREELAELYRSRGELAQRLVDLNEELQELEKKLREDERRLAALEAERAQLEEKLKDREEelrEKRKLNQDLQDELVALQ 140
|
...
gi 153792766 164 MHF 166
Cdd:pfam08614 141 LQL 143
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
51-289 |
9.37e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 43.53 E-value: 9.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAEEARSLRQQLDELNwSTALAEGERDALRRELLELQ-----REGveAGTARSRLDAE-------LGAQRR 118
Cdd:COG0497 175 EELRADEAERARELDLLRFQLEELE-AAALQPGEEEELEEERRRLSnaeklREA--LQEALEALSGGeggaldlLGQALR 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 119 ELEEALGARAALEALLGRLETERRDL-DAAHErqvrdLRARAASLTMHfraratspaapPPRLRDVHDSYALL--VAESW 195
Cdd:COG0497 252 ALERLAEYDPSLAELAERLESALIELeEAASE-----LRRYLDSLEFD-----------PERLEEVEERLALLrrLARKY 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 196 RESVqlyeDEVRELEQALRrgqesrlqaedearlcaQEADALRNQALELEQLRARLEdellRMREEYGMQAEE----RQR 271
Cdd:COG0497 316 GVTV----EELLAYAEELR-----------------AELAELENSDERLEELEAELA----EAEAELLEAAEKlsaaRKK 370
|
250 260
....*....|....*....|
gi 153792766 272 VIDSLEDE--KEALTLAMAD 289
Cdd:COG0497 371 AAKKLEKAvtAELADLGMPN 390
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
51-320 |
1.03e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAEEARSLRQQLDELnwSTALAEGERDALRR------------ELLELQREGVEAGTARSR-------LDA 111
Cdd:pfam01576 222 EQIAELQAQIAELRAQLAKKEEEL--QAALARLEEETAQKnnalkkireleaQISELQEDLESERAARNKaekqrrdLGE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 112 ELGAQRRELEEALGARAALEALLGRLETERRDLDAA-------HERQVRDLRARaasltmHFRARATspaappprLRDVH 184
Cdd:pfam01576 300 ELEALKTELEDTLDTTAAQQELRSKREQEVTELKKAleeetrsHEAQLQEMRQK------HTQALEE--------LTEQL 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 185 DSyALLVAESWRESVQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEY-- 262
Cdd:pfam01576 366 EQ-AKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELes 444
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 263 --GMQAEERQRVIDSledEKEALTLamADRLRDYQELLQVKTGLSLEVATYRALLEGESN 320
Cdd:pfam01576 445 vsSLLNEAEGKNIKL---SKDVSSL--ESQLQDTQELLQEETRQKLNLSTRLRQLEDERN 499
|
|
| HepA |
COG0553 |
Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination, ... |
52-296 |
1.08e-03 |
|
Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination, and repair];
Pssm-ID: 440319 [Multi-domain] Cd Length: 682 Bit Score: 43.29 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 52 RWAEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALE 131
Cdd:COG0553 1 LLLLLLLLALGALGLLLTELLLLLRLGALLLELVLARELLLLLLAADALLLLALLLLLELLLLLAALLLLALLLLALSAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 132 ALLGRLETERRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESVQLYEDEVRELEQ 211
Cdd:COG0553 81 ALLLLRLLLALLLLALLLLLAGLLALALLLLALLGLLLSLALLLLLLLLLLLLLLALLLVLLAALLLLLLLLLLLALLLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 212 ALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQR--VIDSLEDEKEALTLAMAD 289
Cdd:COG0553 161 RLLLLALLLLALEALLLLGLLLALALLALLELALLAAEAELLLLLELLLELELLAEAAVDafRLRRLREALESLPAGLKA 240
|
....*..
gi 153792766 290 RLRDYQE 296
Cdd:COG0553 241 TLRPYQL 247
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
68-307 |
1.21e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 68 RQQLDELNWSTALAEGERDALRRELLELQregVEAGTARSRLDaELGAQRRELEEALG-----------ARAALEALLGR 136
Cdd:COG3096 353 QEDLEELTERLEEQEEVVEEAAEQLAEAE---ARLEAAEEEVD-SLKSQLADYQQALDvqqtraiqyqqAVQALEKARAL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 137 LETERRDLDAAHERQVRdLRARAASLTMHFRARAT----SPAAppprlRDVHD-SYALLVA--------ESWRESVQLYE 203
Cdd:COG3096 429 CGLPDLTPENAEDYLAA-FRAKEQQATEEVLELEQklsvADAA-----RRQFEkAYELVCKiageversQAWQTARELLR 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 204 D----------------EVRELEQALRRGQESRLQAEDEARLCAQE---ADALRNQALELEQLRARLEDELLRMREE-YG 263
Cdd:COG3096 503 RyrsqqalaqrlqqlraQLAELEQRLRQQQNAERLLEEFCQRIGQQldaAEELEELLAELEAQLEELEEQAAEAVEQrSE 582
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 153792766 264 MQAEERQ--RVIDSLEDeKEALTLAMADRLrdyqELLQVKTGLSLE 307
Cdd:COG3096 583 LRQQLEQlrARIKELAA-RAPAWLAAQDAL----ERLREQSGEALA 623
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
55-303 |
2.16e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 55 EDQALYAEEARSLRQQLDELNWSTALAEGERDALrrelLELQREGVEAgtARSRLDAELGAQRRELEEALGARAALEALL 134
Cdd:pfam12128 697 KHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQ----LALLKAAIAA--RRSGAKAELKALETWYKRDLASLGVDPDVI 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 135 GRLETERRDLDAAHERQVRdlraraasltmhFRARATspaappprlrdvhdSYALLVAESWRESVQLYEDEVRELEQALR 214
Cdd:pfam12128 771 AKLKREIRTLERKIERIAV------------RRQEVL--------------RYFDWYQETWLQRRPRLATQLSNIERAIS 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 215 --RGQESRLQAEDEARLCA--QEADALRNQALELEQLRARLEDELLRMR--------EEYGMQAEERQRVIDSLEDEKEA 282
Cdd:pfam12128 825 elQQQLARLIADTKLRRAKleMERKASEKQQVRLSENLRGLRCEMSKLAtlkedansEQAQGSIGERLAQLEDLKLKRDY 904
|
250 260
....*....|....*....|.
gi 153792766 283 LTLAMADRLRDYQELLQVKTG 303
Cdd:pfam12128 905 LSESVKKYVEHFKNVIADHSG 925
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
77-295 |
2.53e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 77 STALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHERQVRDLR 156
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 157 ARAASLTMHFRAR--------ATSPAappprlrDVHDSYALL--VAESWRESVQLYEDEVRELEQAlrrgqesRLQAEDE 226
Cdd:COG3883 90 ERARALYRSGGSVsyldvllgSESFS-------DFLDRLSALskIADADADLLEELKADKAELEAK-------KAELEAK 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 153792766 227 ARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKEALTLAMADRLRDYQ 295
Cdd:COG3883 156 LAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| DUF6212 |
pfam19717 |
Family of unknown function (DUF6212); This entry represents a member of a biosynthetic gene ... |
80-149 |
3.72e-03 |
|
Family of unknown function (DUF6212); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000801) is described by MIBiG as an example of the following biosynthetic class, saccharide. It includes a member from the galactoglucan biosynthetic gene cluster from Sinorhizobium meliloti. This family appears to be predominantly found in proteobacteria.
Pssm-ID: 437549 Cd Length: 388 Bit Score: 41.19 E-value: 3.72e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 153792766 80 LAEGERDALRRELLELQREGVEAGTAR--SRLDAELGAQRRELEEALGARAALEALLGRLETERRDLDAAHE 149
Cdd:pfam19717 25 RLGDGAAALARTLLLALLLAELARLARraAQLMRELAALRREHEALQEAFAALERFLYRLGLAPRRLVFSLE 96
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-253 |
4.49e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAAL 130
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 131 EAllgRLETERRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVhdsyallvaESWRESVQLYEDEVRELE 210
Cdd:COG1196 713 EE---ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL---------EELERELERLEREIEALG 780
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 153792766 211 qalrrgqESRLQAEDEARLCAQEADALRNQALELEQLRARLED 253
Cdd:COG1196 781 -------PVNLLAIEEYEELEERYDFLSEQREDLEEARETLEE 816
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
52-298 |
5.12e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 41.06 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 52 RWAEDQA--LYA----EEARSLRQQLDELnWSTALAEGERDAL--RRELLELQREGVEAGTARsRLDAE-LGAQRREL-- 120
Cdd:NF040586 393 RLLLDQVryLYLrgdyESARDLAERALER-WRERLGPDDRQTLrlRFHLANALRSLGRYEEAR-ELDEDtLERQRRVLgl 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 121 ----EEALGARAALEA---LLGR--------LETERRDLDAAHERQVRDLRAR---AASLTM---HFRARAtspaapppR 179
Cdd:NF040586 471 gedhPHTLMTAGGLGAdlrALGRfrealeldEETLERHRRVFGEDHPRTLRAAnnlAVSLRLlgdYREALE--------L 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 180 LRDVH----------DSYALL----VAESWRESVQlYEDEVRELEQALRRGQESRLQAEDEARLCAQ--EADALRnQALE 243
Cdd:NF040586 543 DREVLrrrrrvlgpdHPRTLLsannLARDLRELGR-YAEALDLLEEALERYREVLGGPDHPDTLRAAksLAVALR-RAGR 620
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 153792766 244 LEQLRARLEDELLRMREEYGMQAEERQRVIDSL-------EDEKEALTLAmADRLRDYQELL 298
Cdd:NF040586 621 LEEALELAEDTYERYRRRFGPDHPDTLAAALSLandlralGDADEARELA-REVLDRYRRVL 681
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
51-318 |
6.24e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.00 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAEEARSLRQQLDELNW-STALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAA 129
Cdd:COG3899 702 DRAARLLLRAARRALARGAYAEALRYlERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALA 781
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 130 LE----------ALLGRLETERRDLDAAHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRESV 199
Cdd:COG3899 782 ALrhgnppasarAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGL 861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 200 QLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDE 279
Cdd:COG3899 862 ETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAA 941
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 153792766 280 KEAL---TLAMADRLRDYQELLQVKTGLSLEVATYRALLEGE 318
Cdd:COG3899 942 AAALaaaAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAA 983
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
179-261 |
6.85e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.81 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 179 RLRDVHDSYALLVaeswresvQLYEDEVRELEQALRR--GQESRLQAEDEARLCAQEADALRNQA----LELEQLRARLE 252
Cdd:PRK10929 131 RAREISDSLSQLP--------QQQTEARRQLNEIERRlqTLGTPNTPLAQAQLTALQAESAALKAlvdeLELAQLSANNR 202
|
....*....
gi 153792766 253 DELLRMREE 261
Cdd:PRK10929 203 QELARLRSE 211
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
64-254 |
7.50e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 64 ARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAGTARSRLDAELGAQRRELEEALGARAALEALLGRLETERRD 143
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 144 LDA---AHERQVRDLRARAASLTMHFRARATSPAAPPPRLRDVHDSYALLVAESWRE-SVQLYEDEVRELEQALRRGQES 219
Cdd:TIGR02169 894 LEAqlrELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElSLEDVQAELQRVEEEIRALEPV 973
|
170 180 190
....*....|....*....|....*....|....*
gi 153792766 220 RLQAEDEArlcAQEADALrnqaLELEQLRARLEDE 254
Cdd:TIGR02169 974 NMLAIQEY---EEVLKRL----DELKEKRAKLEEE 1001
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
61-171 |
8.87e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 8.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 61 AEEARSLRQQLDELNWSTALAEGERDALRRELLELQREGVEAgtARSRLDAELGAQRRELEEALGARAALEALLGRLETE 140
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE--ELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
90 100 110
....*....|....*....|....*....|.
gi 153792766 141 RRDLDAAHERQvrDLRARAASLTMHFRARAT 171
Cdd:COG4717 469 GELAELLQELE--ELKAELRELAEEWAALKL 497
|
|
| FUSC |
pfam04632 |
Fusaric acid resistance protein family; This family includes a conserved region found in two ... |
51-171 |
8.88e-03 |
|
Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.
Pssm-ID: 428044 [Multi-domain] Cd Length: 655 Bit Score: 40.35 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 153792766 51 DRWAEDQALYAEEARSLRQQLDEL-NWSTALAE----GERDALRRELLELQREGVEAGTARSRLDAELgaqRRELEEALG 125
Cdd:pfam04632 239 RLLARLRTEGAGTVPELAALLDELaAWEAALAAealqAALAALRARLRALRPALPLDFDTAAELLARL---ADLLAELAE 315
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 153792766 126 ARAALEALLGRLETERRdldaaHERQVRDLRARAASLTMhfrARAT 171
Cdd:pfam04632 316 ALASCRALRHPIAQGAR-----PARLARHRDHGAALLNG---LRAA 353
|
|
| |
