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Conserved domains on  [gi|302841916|ref|XP_002952502|]
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uncharacterized protein VOLCADRAFT_105555 [Volvox carteri f. nagariensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GanA super family cl34369
Beta-galactosidase GanA [Carbohydrate transport and metabolism];
407-460 9.43e-05

Beta-galactosidase GanA [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG1874:

Pssm-ID: 441478 [Multi-domain]  Cd Length: 609  Bit Score: 46.07  E-value: 9.43e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 302841916 407 FRQWLQARRPQLESLNARWGTAF-----KRWEEVGPPVLEAGSVmgpdLQARYWDFLKF 460
Cdd:COG1874  165 FRDWLRERYGTLDALNEAWGTAFwsqryTDWDEIEPPRLTPTTA----NPSLRLDFRRF 219
 
Name Accession Description Interval E-value
GanA COG1874
Beta-galactosidase GanA [Carbohydrate transport and metabolism];
407-460 9.43e-05

Beta-galactosidase GanA [Carbohydrate transport and metabolism];


Pssm-ID: 441478 [Multi-domain]  Cd Length: 609  Bit Score: 46.07  E-value: 9.43e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 302841916 407 FRQWLQARRPQLESLNARWGTAF-----KRWEEVGPPVLEAGSVmgpdLQARYWDFLKF 460
Cdd:COG1874  165 FRDWLRERYGTLDALNEAWGTAFwsqryTDWDEIEPPRLTPTTA----NPSLRLDFRRF 219
Glyco_hydro_42 pfam02449
Beta-galactosidase; This group of beta-galactosidase enzymes belong to the glycosyl hydrolase ...
 406-460 4.17e-04

Beta-galactosidase; This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.


Pssm-ID: 396834  Cd Length: 376  Bit Score: 43.41  E-value: 4.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 302841916  406 SFRQWLQARRPQLESLNARWGTAF-----KRWEEVGPPvLEAGSVMGPDLQArywDFLKF 460
Cdd:pfam02449 153 AFRKWLKNRYGTIDALNEAWGTAFwsqtySDFDEIEPP-RPAPTFPNPSQIL---DYRRF 208
 
Name Accession Description Interval E-value
GanA COG1874
Beta-galactosidase GanA [Carbohydrate transport and metabolism];
407-460 9.43e-05

Beta-galactosidase GanA [Carbohydrate transport and metabolism];


Pssm-ID: 441478 [Multi-domain]  Cd Length: 609  Bit Score: 46.07  E-value: 9.43e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 302841916 407 FRQWLQARRPQLESLNARWGTAF-----KRWEEVGPPVLEAGSVmgpdLQARYWDFLKF 460
Cdd:COG1874  165 FRDWLRERYGTLDALNEAWGTAFwsqryTDWDEIEPPRLTPTTA----NPSLRLDFRRF 219
Glyco_hydro_42 pfam02449
Beta-galactosidase; This group of beta-galactosidase enzymes belong to the glycosyl hydrolase ...
 406-460 4.17e-04

Beta-galactosidase; This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.


Pssm-ID: 396834  Cd Length: 376  Bit Score: 43.41  E-value: 4.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 302841916  406 SFRQWLQARRPQLESLNARWGTAF-----KRWEEVGPPvLEAGSVMGPDLQArywDFLKF 460
Cdd:pfam02449 153 AFRKWLKNRYGTIDALNEAWGTAFwsqtySDFDEIEPP-RPAPTFPNPSQIL---DYRRF 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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