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Conserved domains on  [gi|564328292|ref|XP_006229226|]
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nucleobindin-1 isoform X3 [Rattus norvegicus]

Protein Classification

EF-hand domain-containing protein( domain architecture ID 12144783)

EF-hand (EFh) domain-containing protein may be involved in binding intracellular calcium and in calcium signal transduction

CATH:  1.10.238.10
Gene Ontology:  GO:0005509
PubMed:  2479149|10191494
SCOP:  3001983

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EF-hand_7 pfam13499
EF-hand domain pair;
246-319 3.52e-04

EF-hand domain pair;


:

Pssm-ID: 463900 [Multi-domain]  Cd Length: 67  Bit Score: 38.77  E-value: 3.52e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564328292  246 KTFFILHDINSDGVLDEQELEALFTK-ELEKVYDPKneeddmremeeerlrMREHVMKNVDTNQDRLVTLEEFLA 319
Cdd:pfam13499   5 KEAFKLLDSDGDGYLDVEELKKLLRKlEEGEPLSDE---------------EVEELFKEFDLDKDGRISFEEFLE 64
 
Name Accession Description Interval E-value
EF-hand_7 pfam13499
EF-hand domain pair;
246-319 3.52e-04

EF-hand domain pair;


Pssm-ID: 463900 [Multi-domain]  Cd Length: 67  Bit Score: 38.77  E-value: 3.52e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564328292  246 KTFFILHDINSDGVLDEQELEALFTK-ELEKVYDPKneeddmremeeerlrMREHVMKNVDTNQDRLVTLEEFLA 319
Cdd:pfam13499   5 KEAFKLLDSDGDGYLDVEELKKLLRKlEEGEPLSDE---------------EVEELFKEFDLDKDGRISFEEFLE 64
 
Name Accession Description Interval E-value
EF-hand_7 pfam13499
EF-hand domain pair;
246-319 3.52e-04

EF-hand domain pair;


Pssm-ID: 463900 [Multi-domain]  Cd Length: 67  Bit Score: 38.77  E-value: 3.52e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564328292  246 KTFFILHDINSDGVLDEQELEALFTK-ELEKVYDPKneeddmremeeerlrMREHVMKNVDTNQDRLVTLEEFLA 319
Cdd:pfam13499   5 KEAFKLLDSDGDGYLDVEELKKLLRKlEEGEPLSDE---------------EVEELFKEFDLDKDGRISFEEFLE 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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