|
Name |
Accession |
Description |
Interval |
E-value |
| KISc_CENP_E |
cd01374 |
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ... |
6-329 |
1.03e-164 |
|
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276825 [Multi-domain] Cd Length: 321 Bit Score: 509.57 E-value: 1.03e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 6 AVAVCVRVRPLNSREEELGEasHIYWKTDKNAIYQSD-GGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIFA 84
Cdd:cd01374 1 KITVTVRVRPLNSREIGINE--QVAWEIDNDTIYLVEpPSTSFTFDHVFGGDSTNREVYELIAKPVVKSALEGYNGTIFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 85 YGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKFPEREFLLRVSYMEIYNETITDLLCNTQkvKPLIIREDINRNVYV 164
Cdd:cd01374 79 YGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKINDLLSPTS--QNLKIRDDVEKGVYV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 165 ADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESsnCDGSIKVSHLNLVDLAGSERAAQ 244
Cdd:cd01374 157 AGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL--EEGTVRVSTLNLIDLAGSERAAQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 245 TGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS--LDETLTTLQF 322
Cdd:cd01374 235 TGAAGVRRKEGSHINKSLLTLGTVISKLSEGKVGGHIPYRDSKLTRILQPSLGGNSRTAIICTITPAEshVEETLNTLKF 314
|
....*..
gi 1958755386 323 ASTAKYM 329
Cdd:cd01374 315 ASRAKKI 321
|
|
| KISc |
smart00129 |
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ... |
6-336 |
2.14e-140 |
|
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Pssm-ID: 214526 [Multi-domain] Cd Length: 335 Bit Score: 441.63 E-value: 2.14e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 6 AVAVCVRVRPLNSREEELGEASHIYW------KTDKNAIYQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYN 79
Cdd:smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFpdkvgkTLTVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVLEGYN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 80 GTIFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKF-PEREFLLRVSYMEIYNETITDLLCNTQKvkPLIIREDI 158
Cdd:smart00129 81 ATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEKIDKReEGWQFSVKVSYLEIYNEKIRDLLNPSSK--KLEIREDE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 159 NRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSncdGSIKVSHLNLVDLAG 238
Cdd:smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSS---GSGKASKLNLVDLAG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 239 SERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPA--SLDET 316
Cdd:smart00129 236 SERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSssNLEET 315
|
330 340
....*....|....*....|
gi 1958755386 317 LTTLQFASTAKYMKNTPYVN 336
Cdd:smart00129 316 LSTLRFASRAKEIKNKPIVN 335
|
|
| Kinesin |
pfam00225 |
Kinesin motor domain; |
12-327 |
2.75e-137 |
|
Kinesin motor domain;
Pssm-ID: 459720 [Multi-domain] Cd Length: 326 Bit Score: 432.00 E-value: 2.75e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 12 RVRPLNSREEELGEA------SHIYWKTDKNAIYQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIFAY 85
Cdd:pfam00225 1 RVRPLNEREKERGSSvivsveSVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVTIFAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 86 GQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKFPER-EFLLRVSYMEIYNETITDLLC-NTQKVKPLIIREDINRNVY 163
Cdd:pfam00225 81 GQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERsEFSVKVSYLEIYNEKIRDLLSpSNKNKRKLRIREDPKKGVY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 164 VADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNcdGSIKVSHLNLVDLAGSERAA 243
Cdd:pfam00225 161 VKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGE--ESVKTGKLNLVDLAGSERAS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 244 QTG-AEGMRLKEGCYINRNLLILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS--LDETLTTL 320
Cdd:pfam00225 239 KTGaAGGQRLKEAANINKSLSALGNVISALADKK-SKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSsnYEETLSTL 317
|
....*..
gi 1958755386 321 QFASTAK 327
Cdd:pfam00225 318 RFASRAK 324
|
|
| KISc |
cd00106 |
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ... |
6-327 |
9.96e-135 |
|
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276812 [Multi-domain] Cd Length: 326 Bit Score: 424.75 E-value: 9.96e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 6 AVAVCVRVRPLNSREeelGEASHIYWKTDKNAIY-------QSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGY 78
Cdd:cd00106 1 NVRVAVRVRPLNGRE---ARSAKSVISVDGGKSVvldppknRVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSALEGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 79 NGTIFAYGQTASGKTHTMMGSEDC-LGVIPRAIHDIFQRIKKFPE--REFLLRVSYMEIYNETITDLLCNTQKvKPLIIR 155
Cdd:cd00106 78 NGTIFAYGQTGSGKTYTMLGPDPEqRGIIPRALEDIFERIDKRKEtkSSFSVSASYLEIYNEKIYDLLSPVPK-KPLSLR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 156 EDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKaesSNCDGSIKVSHLNLVD 235
Cdd:cd00106 157 EDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNR---EKSGESVTSSKLNLVD 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 236 LAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS--L 313
Cdd:cd00106 234 LAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQ-NKHIPYRDSKLTRLLQDSLGGNSKTIMIACISPSSenF 312
|
330
....*....|....
gi 1958755386 314 DETLTTLQFASTAK 327
Cdd:cd00106 313 EETLSTLRFASRAK 326
|
|
| KISc_KIF3 |
cd01371 |
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ... |
6-327 |
3.10e-100 |
|
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276822 [Multi-domain] Cd Length: 334 Bit Score: 326.34 E-value: 3.10e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 6 AVAVCVRVRPLNSREEELGEASHIYWKTDKNAIYQSDGG-------KSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGY 78
Cdd:cd01371 2 NVKVVVRCRPLNGKEKAAGALQIVDVDEKRGQVSVRNPKataneppKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEGY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 79 NGTIFAYGQTASGKTHTMMG---SEDCLGVIPRAIHDIFQRIKKFPE-REFLLRVSYMEIYNETITDLLCNTQKvKPLII 154
Cdd:cd01371 82 NGTIFAYGQTGTGKTYTMEGkreDPELRGIIPNSFAHIFGHIARSQNnQQFLVRVSYLEIYNEEIRDLLGKDQT-KRLEL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 155 REDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAEssncDGS--IKVSHLN 232
Cdd:cd01371 161 KERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGE----DGEnhIRVGKLN 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 233 LVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS 312
Cdd:cd01371 237 LVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGK-STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPAD 315
|
330
....*....|....*..
gi 1958755386 313 --LDETLTTLQFASTAK 327
Cdd:cd01371 316 ynYDETLSTLRYANRAK 332
|
|
| KISc_KIF4 |
cd01372 |
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ... |
6-330 |
1.67e-99 |
|
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276823 [Multi-domain] Cd Length: 341 Bit Score: 324.28 E-value: 1.67e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 6 AVAVCVRVRPLNSREEELGeashiywktDKNAIYQSDGG--------KSFQFDRVFHSNETTKNVYEEIAVPIISSAIQG 77
Cdd:cd01372 2 SVRVAVRVRPLLPKEIIEG---------CRICVSFVPGEpqvtvgtdKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 78 YNGTIFAYGQTASGKTHTMMGS------EDCLGVIPRAIHDIFQRI-KKFPEREFLLRVSYMEIYNETITDLLC-NTQKV 149
Cdd:cd01372 73 YNATVLAYGQTGSGKTYTMGTAytaeedEEQVGIIPRAIQHIFKKIeKKKDTFEFQLKVSFLEIYNEEIRDLLDpETDKK 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 150 KPLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREK-----AESSNCDG 224
Cdd:cd01372 153 PTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiaPMSADDKN 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 225 SIKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQ-VGGFINYRDSKLTRILQNSLGGNAKTR 303
Cdd:cd01372 233 STFTSKFHFVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESkKGAHVPYRDSKLTRLLQDSLGGNSHTL 312
|
330 340
....*....|....*....|....*....
gi 1958755386 304 IICTITPAS--LDETLTTLQFASTAKYMK 330
Cdd:cd01372 313 MIACVSPADsnFEETLNTLKYANRARNIK 341
|
|
| KISc_KIF1A_KIF1B |
cd01365 |
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ... |
5-336 |
1.67e-98 |
|
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Pssm-ID: 276816 [Multi-domain] Cd Length: 361 Bit Score: 322.38 E-value: 1.67e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 5 AAVAVCVRVRPLNSREEELGEASHIYWK-----------TDKNAIYQSDGGKSFQFDRVFHSNE-------TTKNVYEEI 66
Cdd:cd01365 1 ANVKVAVRVRPFNSREKERNSKCIVQMSgkettlknpkqADKNNKATREVPKSFSFDYSYWSHDsedpnyaSQEQVYEDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 67 AVPIISSAIQGYNGTIFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRI--KKFPEREFLLRVSYMEIYNETITDLLC 144
Cdd:cd01365 81 GEELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRIadTTNQNMSYSVEVSYMEIYNEKVRDLLN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 145 NTQKVKP--LIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFrMILESREKAESSNC 222
Cdd:cd01365 161 PKPKKNKgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVF-TIVLTQKRHDAETN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 223 DGSIKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGG------FINYRDSKLTRILQNSL 296
Cdd:cd01365 240 LTTEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssFIPYRDSVLTWLLKENL 319
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1958755386 297 GGNAKTRIICTITPASL--DETLTTLQFASTAKYMKNTPYVN 336
Cdd:cd01365 320 GGNSKTAMIAAISPADInyEETLSTLRYADRAKKIVNRAVVN 361
|
|
| KISc_KHC_KIF5 |
cd01369 |
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ... |
4-327 |
1.73e-98 |
|
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276820 [Multi-domain] Cd Length: 325 Bit Score: 320.82 E-value: 1.73e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 4 EAAVAVCVRVRPLNSREEELGEASHIYWKTDKN-AIYQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTI 82
Cdd:cd01369 1 ECNIKVVCRFRPLNELEVLQGSKSIVKFDPEDTvVIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLNGYNGTI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 83 FAYGQTASGKTHTMMGSEDC---LGVIPRAIHDIFQRIKKFPER-EFLLRVSYMEIYNETITDLLcNTQKvKPLIIREDI 158
Cdd:cd01369 81 FAYGQTSSGKTYTMEGKLGDpesMGIIPRIVQDIFETIYSMDENlEFHVKVSYFEIYMEKIRDLL-DVSK-TNLSVHEDK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 159 NRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESRekaesSNCDGSIKVSHLNLVDLAG 238
Cdd:cd01369 159 NRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE-----NVETEKKKSGKLYLVDLAG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 239 SERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvGGFINYRDSKLTRILQNSLGGNAKTRIICTITPASLD--ET 316
Cdd:cd01369 234 SEKVSKTGAEGAVLDEAKKINKSLSALGNVINALTDGK-KTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNesET 312
|
330
....*....|.
gi 1958755386 317 LTTLQFASTAK 327
Cdd:cd01369 313 LSTLRFGQRAK 323
|
|
| KISc_KLP2_like |
cd01373 |
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ... |
6-339 |
7.91e-95 |
|
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276824 [Multi-domain] Cd Length: 347 Bit Score: 311.36 E-value: 7.91e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 6 AVAVCVRVRPLNSREEELGEASHIYWKTDKNAIYQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIFAY 85
Cdd:cd01373 2 AVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKTFTFDHVADSNTNQESVFQSVGKPIVESCLSGYNGTIFAY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 86 GQTASGKTHTMMG---------SEDClGVIPRAIHDIFQRIKKFPER-----EFLLRVSYMEIYNETITDLLCNTQkvKP 151
Cdd:cd01373 82 GQTGSGKTYTMWGpsesdnespHGLR-GVIPRIFEYLFSLIQREKEKagegkSFLCKCSFLEIYNEQIYDLLDPAS--RN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 152 LIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKaesSNCDGSIKVSHL 231
Cdd:cd01373 159 LKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEK---KACFVNIRTSRL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 232 NLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGGF--INYRDSKLTRILQNSLGGNAKTRIICTIT 309
Cdd:cd01373 236 NLVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDVAHGKQrhVCYRDSKLTFLLRDSLGGNAKTAIIANVH 315
|
330 340 350
....*....|....*....|....*....|..
gi 1958755386 310 PASLD--ETLTTLQFASTAKYMKNTPYVNEVS 339
Cdd:cd01373 316 PSSKCfgETLSTLRFAQRAKLIKNKAVVNEDT 347
|
|
| KISc_C_terminal |
cd01366 |
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ... |
12-324 |
2.59e-94 |
|
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276817 [Multi-domain] Cd Length: 329 Bit Score: 309.14 E-value: 2.59e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 12 RVRPLNSrEEELGEASHI-YWKTDKNAIYQSDGG---KSFQFDRVFHSNETTKNVYEEIAvPIISSAIQGYNGTIFAYGQ 87
Cdd:cd01366 9 RVRPLLP-SEENEDTSHItFPDEDGQTIELTSIGakqKEFSFDKVFDPEASQEDVFEEVS-PLVQSALDGYNVCIFAYGQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 88 TASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKFPER--EFLLRVSYMEIYNETITDLLC-NTQKVKPLIIRED-INRNVY 163
Cdd:cd01366 87 TGSGKTYTMEGPPESPGIIPRALQELFNTIKELKEKgwSYTIKASMLEIYNETIRDLLApGNAPQKKLEIRHDsEKGDTT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 164 VADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNCDGSikvshLNLVDLAGSERAA 243
Cdd:cd01366 167 VTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNLQTGEISVGK-----LNLVDLAGSERLN 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 244 QTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITPA--SLDETLTTLQ 321
Cdd:cd01366 242 KSGATGDRLKETQAINKSLSALGDVISALRQKQ--SHIPYRNSKLTYLLQDSLGGNSKTLMFVNISPAesNLNETLNSLR 319
|
...
gi 1958755386 322 FAS 324
Cdd:cd01366 320 FAS 322
|
|
| KISc_KIP3_like |
cd01370 |
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ... |
9-327 |
3.71e-92 |
|
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276821 [Multi-domain] Cd Length: 345 Bit Score: 303.50 E-value: 3.71e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 9 VCVRVRPLNSREEELG---------------------EASHIYWKTDKNAIYQSDGGKSFQFDRVFHSNETTKNVYEEIA 67
Cdd:cd01370 4 VAVRVRPFSEKEKNEGfrrivkvmdnhmlvfdpkdeeDGFFHGGSNNRDRRKRRNKELKYVFDRVFDETSTQEEVYEETT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 68 VPIISSAIQGYNGTIFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKF-PEREFLLRVSYMEIYNETITDLLCNT 146
Cdd:cd01370 84 KPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRIESLkDEKEFEVSMSYLEIYNETIRDLLNPS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 147 QkvKPLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNCDgsI 226
Cdd:cd01370 164 S--GPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKTASINQQ--V 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 227 KVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSD-GQVGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01370 240 RQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADpGKKNKHIPYRDSKLTRLLKDSLGGNCRTVMI 319
|
330 340
....*....|....*....|....
gi 1958755386 306 CTITPASL--DETLTTLQFASTAK 327
Cdd:cd01370 320 ANISPSSSsyEETHNTLKYANRAK 343
|
|
| KISc_BimC_Eg5 |
cd01364 |
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ... |
7-337 |
6.38e-88 |
|
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276815 [Multi-domain] Cd Length: 353 Bit Score: 291.54 E-value: 6.38e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 7 VAVCVRVRPLNSREEELGEASHIYWKTDKNAIYQSDGG-------KSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYN 79
Cdd:cd01364 4 IQVVVRCRPFNLRERKASSHSVVEVDPVRKEVSVRTGGladksstKTYTFDMVFGPEAKQIDVYRSVVCPILDEVLMGYN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 80 GTIFAYGQTASGKTHTMMGSE-----------DCLGVIPRAIHDIFQRIKKfPEREFLLRVSYMEIYNETITDLL-CNTQ 147
Cdd:cd01364 84 CTIFAYGQTGTGKTYTMEGDRspneeytweldPLAGIIPRTLHQLFEKLED-NGTEYSVKVSYLEIYNEELFDLLsPSSD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 148 KVKPLIIREDINR--NVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKaeSSNCDGS 225
Cdd:cd01364 163 VSERLRMFDDPRNkrGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHIKET--TIDGEEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 226 IKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGqvGGFINYRDSKLTRILQNSLGGNAKTRII 305
Cdd:cd01364 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER--APHVPYRESKLTRLLQDSLGGRTKTSII 318
|
330 340 350
....*....|....*....|....*....|....
gi 1958755386 306 CTITPAS--LDETLTTLQFASTAKYMKNTPYVNE 337
Cdd:cd01364 319 ATISPASvnLEETLSTLEYAHRAKNIKNKPEVNQ 352
|
|
| KISc_KIF9_like |
cd01375 |
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ... |
6-327 |
7.34e-76 |
|
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276826 [Multi-domain] Cd Length: 334 Bit Score: 256.35 E-value: 7.34e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 6 AVAVCVRVRPLNSREEE---LGE-----ASHIYWKTDKNAIYQSDGGKSFQFDRVFHsNETTKNVYEEIAVPIISSAIQG 77
Cdd:cd01375 1 KVQAFVRVRPTDDFAHEmikYGEdgksiSIHLKKDLRRGVVNNQQEDWSFKFDGVLH-NASQELVYETVAKDVVSSALAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 78 YNGTIFAYGQTASGKTHTMMGSEDCL---GVIPRAIHDIFQRIKKFPEREFLLRVSYMEIYNETITDLLCNT----QKVK 150
Cdd:cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTENYkhrGIIPRALQQVFRMIEERPTKAYTVHVSYLEIYNEQLYDLLSTLpyvgPSVT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 151 PLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNcdgSIKVSH 230
Cdd:cd01375 160 PMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRTLSSE---KYITSK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 231 LNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDgQVGGFINYRDSKLTRILQNSLGGNAKTRIICTIT- 309
Cdd:cd01375 237 LNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSD-KDRTHVPFRQSKLTHVLRDSLGGNCNTVMVANIYg 315
|
330
....*....|....*....
gi 1958755386 310 -PASLDETLTTLQFASTAK 327
Cdd:cd01375 316 eAAQLEETLSTLRFASRVK 334
|
|
| KISc_KIF23_like |
cd01368 |
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ... |
7-327 |
4.36e-75 |
|
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276819 [Multi-domain] Cd Length: 345 Bit Score: 254.24 E-value: 4.36e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 7 VAVCVRVRPLNSREEELGEASHI-----------------YWKTDKNAIYQSdggKSFQFDRVFHSNETTKNVYEEIAVP 69
Cdd:cd01368 3 VKVYLRVRPLSKDELESEDEGCIevinsttvvlhppkgsaANKSERNGGQKE---TKFSFSKVFGPNTTQKEFFQGTALP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 70 IISSAIQGYNGTIFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKkfperEFLLRVSYMEIYNETITDLL-----C 144
Cdd:cd01368 80 LVQDLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIG-----GYSVFVSYIEIYNEYIYDLLepspsS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 145 NTQKVKPLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMIL---ESREKAESSN 221
Cdd:cd01368 155 PTKKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLvqaPGDSDGDVDQ 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 222 CDGSIKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQVGGFIN---YRDSKLTRILQNSLGG 298
Cdd:cd01368 235 DKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQLQGTNKmvpFRDSKLTHLFQNYFDG 314
|
330 340 350
....*....|....*....|....*....|.
gi 1958755386 299 NAKTRIICTITPASL--DETLTTLQFASTAK 327
Cdd:cd01368 315 EGKASMIVNVNPCASdyDETLHVMKFSAIAQ 345
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
21-425 |
1.42e-67 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 240.41 E-value: 1.42e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 21 EELGEASHIYWKTDKNAI--YQSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIFAYGQTASGKTHTMMG 98
Cdd:COG5059 30 IIPGELGERLINTSKKSHvsLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 99 SEDCLGVIPRAIHDIFQRIKKFP-EREFLLRVSYMEIYNETITDLL-CNTQKvkpLIIREDINRNVYVADLTEEVVYTAE 176
Cdd:COG5059 110 TEEEPGIIPLSLKELFSKLEDLSmTKDFAVSISYLEIYNEKIYDLLsPNEES---LNIREDSLLGVKVAGLTEKHVSSKE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 177 MALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSNCDGSikvshLNLVDLAGSERAAQTGAEGMRLKEGC 256
Cdd:COG5059 187 EILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSK-----LSLVDLAGSERAARTGNRGTRLKEGA 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 257 YINRNLLILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPAS--LDETLTTLQFASTAKYMKNTPY 334
Cdd:COG5059 262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSnsFEETINTLKFASRAKSIKNKIQ 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 335 VNEVSNDEALLKRYRREIVDLKKQleevNTKTRAQEIEKDQLAQLLDEKDLLQKVQDEKIQNLKRMLVTSSSIALQQELE 414
Cdd:COG5059 342 VNSSSDSSREIEEIKFDLSEDRSE----IEILVFREQSQLSQSSLSGIFAYMQSLKKETETLKSRIDLIMKSIISGTFER 417
|
410
....*....|.
gi 1958755386 415 IKKKRRVTWCF 425
Cdd:COG5059 418 KKLLKEEGWKY 428
|
|
| KISc_KID_like |
cd01376 |
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ... |
7-327 |
9.41e-66 |
|
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276827 [Multi-domain] Cd Length: 319 Bit Score: 226.62 E-value: 9.41e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 7 VAVCVRVRPLNSREEELGEASHIYWkTDKNAIYQSDG-----GKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGT 81
Cdd:cd01376 2 VRVAVRVRPFVDGTAGASDPSCVSG-IDSCSVELADPrnhgeTLKYQFDAFYGEESTQEDIYAREVQPIVPHLLEGQNAT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 82 IFAYGQTASGKTHTMMGSEDCLGVIPRAIHDIFQRIKKFPEREFLLrVSYMEIYNETITDLLcnTQKVKPLIIREDINRN 161
Cdd:cd01376 81 VFAYGSTGAGKTFTMLGSPEQPGLMPLTVMDLLQMTRKEAWALSFT-MSYLEIYQEKILDLL--EPASKELVIREDKDGN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 162 VYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREkaesSNCDGSIKVSHLNLVDLAGSER 241
Cdd:cd01376 158 ILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRE----RLAPFRQRTGKLNLIDLAGSED 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 242 AAQTGAEGMRLKEGCYINRNLLILGQVIKKLSDGQvgGFINYRDSKLTRILQNSLGGNAKTRIICTITP--ASLDETLTT 319
Cdd:cd01376 234 NRRTGNEGIRLKESGAINSSLFVLSKVVNALNKNL--PRIPYRDSKLTRLLQDSLGGGSRCIMVANIAPerTFYQDTLST 311
|
....*...
gi 1958755386 320 LQFASTAK 327
Cdd:cd01376 312 LNFAARSR 319
|
|
| KISc_KIF2_like |
cd01367 |
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ... |
9-327 |
1.35e-62 |
|
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276818 [Multi-domain] Cd Length: 328 Bit Score: 217.55 E-value: 1.35e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 9 VCVRVRPLNSREEELGEaSHIYWKTDKNAIY------QSDGGK-----SFQFDRVFHSNETTKNVYEEIAVPIISSAIQG 77
Cdd:cd01367 4 VCVRKRPLNKKEVAKKE-IDVVSVPSKLTLIvhepklKVDLTKyienhTFRFDYVFDESSSNETVYRSTVKPLVPHIFEG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 78 YNGTIFAYGQTASGKTHTMMGS----EDCLGVIPRAIHDIFQRIKKFPEREFL-LRVSYMEIYNETITDLLCNTQKVKpl 152
Cdd:cd01367 83 GKATCFAYGQTGSGKTYTMGGDfsgqEESKGIYALAARDVFRLLNKLPYKDNLgVTVSFFEIYGGKVFDLLNRKKRVR-- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 153 iIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKAESSncdGSikvshLN 232
Cdd:cd01367 161 -LREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTNKLH---GK-----LS 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 233 LVDLAGSERAAQTGAEG-MRLKEGCYINRNLLILGQVIKKLSDGQVggFINYRDSKLTRILQNSL-GGNAKTRIICTITP 310
Cdd:cd01367 232 FVDLAGSERGADTSSADrQTRMEGAEINKSLLALKECIRALGQNKA--HIPFRGSKLTQVLKDSFiGENSKTCMIATISP 309
|
330
....*....|....*....
gi 1958755386 311 A--SLDETLTTLQFASTAK 327
Cdd:cd01367 310 GasSCEHTLNTLRYADRVK 328
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
4-362 |
3.01e-62 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 235.98 E-value: 3.01e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 4 EAAVAVCVRVRPLNSREEElgeaSHIYWKTDKNAIyqSDGGKSFQFDRVFHSNETTKNVYEEIAVPIISSAIQGYNGTIF 83
Cdd:PLN03188 97 DSGVKVIVRMKPLNKGEEG----EMIVQKMSNDSL--TINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVF 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 84 AYGQTASGKTHTMMG----------SEDCLGVIPRAIHDIFQRIK----KFPERE--FLLRVSYMEIYNETITDLLCNTQ 147
Cdd:PLN03188 171 AYGQTGSGKTYTMWGpanglleehlSGDQQGLTPRVFERLFARINeeqiKHADRQlkYQCRCSFLEIYNEQITDLLDPSQ 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 148 KvkPLIIREDINRNVYVADLTEEVVYTAEMALKWLATGEKNRHYGITKMNQRSSRSHTIFRMILESREKaesSNCDG--S 225
Cdd:PLN03188 251 K--NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCK---SVADGlsS 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 226 IKVSHLNLVDLAGSERAAQTGAEGMRLKEGCYINRNLLILGQVIKKLSD-GQVGG--FINYRDSKLTRILQNSLGGNAKT 302
Cdd:PLN03188 326 FKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEiSQTGKqrHIPYRDSRLTFLLQESLGGNAKL 405
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 303 RIICTITPAS--LDETLTTLQFASTAKYMKNTPYVNEVSNDEalLKRYRREIVDLKKQLEEV 362
Cdd:PLN03188 406 AMVCAISPSQscKSETFSTLRFAQRAKAIKNKAVVNEVMQDD--VNFLREVIRQLRDELQRV 465
|
|
| Motor_domain |
cd01363 |
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ... |
9-269 |
1.41e-24 |
|
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.
Pssm-ID: 276814 [Multi-domain] Cd Length: 170 Bit Score: 102.42 E-value: 1.41e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 9 VCVRVRPLNSREeelgeashiywktdknaIYQSDggKSFQFDRVFHSNETTKNVYEeIAVPIISSAIQGYNG-TIFAYGQ 87
Cdd:cd01363 1 VLVRVNPFKELP-----------------IYRDS--KIIVFYRGFRRSESQPHVFA-IADPAYQSMLDGYNNqSIFAYGE 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 88 TASGKTHTMMgsedclGVIPRAIHDIFQRIKKfperefllrvsymeiynetitdllcntqkvkpliirediNRNVYVADL 167
Cdd:cd01363 61 SGAGKTETMK------GVIPYLASVAFNGINK---------------------------------------GETEGWVYL 95
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 168 TEEVVYTAEMALKWLATGEKNRHyGITKMNQRSSRSHTIFRMilesrekaessncdgsikvshlnLVDLAGSERaaqtga 247
Cdd:cd01363 96 TEITVTLEDQILQANPILEAFGN-AKTTRNENSSRFGKFIEI-----------------------LLDIAGFEI------ 145
|
250 260
....*....|....*....|..
gi 1958755386 248 egmrlkegcyINRNLLILGQVI 269
Cdd:cd01363 146 ----------INESLNTLMNVL 157
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
832-1693 |
3.05e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 112.07 E-value: 3.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 832 RQEEVLEESERVKQEL---SQKTQELAQKTAEGQEM-----LNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEV 903
Cdd:TIGR02168 190 RLEDILNELERQLKSLerqAEKAERYKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 904 RALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGS- 982
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEl 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 983 SDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEeQRKIDSLLQENSRLQQTLESIIAEKEQLKmdlkENIEMSVENQE 1062
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETL-RSKVAQLELQIASLNNEIERLEARLERLE----DRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1063 EL--RILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETERLELAQKLHENYEK- 1139
Cdd:TIGR02168 425 ELlkKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGf 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1140 ---MESITKERNDLKE----LQESFEIEKKqlkeYAREMESA---GLQtkeqlNIAHANLKEYQEIIKELRGSISEKEAQ 1209
Cdd:TIGR02168 505 segVKALLKNQSGLSGilgvLSELISVDEG----YEAAIEAAlggRLQ-----AVVVENLNAAKKAIAFLKQNELGRVTF 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1210 ASSTQDTGKTNPASQGETP--VPREQELLPDAEEARASAEKGseLEPVEEHSRTAHSLTTEgiemeiLALTKKLEESQKE 1287
Cdd:TIGR02168 576 LPLDSIKGTEIQGNDREILknIEGFLGVAKDLVKFDPKLRKA--LSYLLGGVLVVDDLDNA------LELAKKLRPGYRI 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1288 IsclTKERSDLRRtqealqveCAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEV 1367
Cdd:TIGR02168 648 V---TLDGDLVRP--------GGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1368 TTGELERKVQELCEKQEQLNIKETSEvqgkmseldhirallltkdsalQSVESDRLRLNKQLEESQEEIKILIKEREELR 1447
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEV----------------------EQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1448 RAQEALHVEREQQQESIKEISTRLQ----ELQDKEYEYlvmKSLNETQGNKCEDLnQQLEAQKSSLEKvemQNVNLTQRL 1523
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKalreALDELRAEL---TLLNEEAANLRERL-ESLERRIAATER---RLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1524 NETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETI----TKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQ 1599
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEealaLLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1600 NSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEA-LREERDQLRESLRQTEASDLE-----KQEKLRIAHL-- 1671
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEeARRRLKRLENKIKELGPVNLAaieeyEELKERYDFLta 1007
|
890 900
....*....|....*....|....*
gi 1958755386 1672 ---DLKEHQETIERLMGSVAKRTEE 1693
Cdd:TIGR02168 1008 qkeDLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
716-1564 |
2.58e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 108.99 E-value: 2.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 716 LELEKRITDLQKELnkEVEEKETLQKEVH-LLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGL 794
Cdd:TIGR02168 216 KELKAELRELELAL--LVLRLEELREELEeLQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 795 LEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREK 874
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 875 LERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQ-EQLLNALESLK 953
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 954 QHQETINMLKMKATEEmsdhlpikgregsSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEeQRKIDSLLQENSRLQ 1033
Cdd:TIGR02168 454 EELERLEEALEELREE-------------LEEAEQALDAAERELAQLQARLDSLERLQENLEGF-SEGVKALLKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1034 QTLESIIaekEQLKMDlkENIEMSVENQEELRiLRDELKRQQEIAAQEKDHVTEKSE------ELSRAHERLAEIEEKLK 1107
Cdd:TIGR02168 520 GILGVLS---ELISVD--EGYEAAIEAALGGR-LQAVVVENLNAAKKAIAFLKQNELgrvtflPLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1108 EKNEFRNQALALERVET-ERLELA-QKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIA 1185
Cdd:TIGR02168 594 LKNIEGFLGVAKDLVKFdPKLRKAlSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSIL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1186 H--ANLKEYQEIIKELRGSISEKEAQASSTQDTgKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAH 1263
Cdd:TIGR02168 674 ErrREIEELEEKIEELEEKIAELEKALAELRKE-LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1264 SLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENK 1343
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1344 IDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKeTSEVQGKMSELDHIRALLLTKDSALQSVESDRL 1423
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-LNERASLEEALALLRSELEELSEELRELESKRS 911
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1424 RLNKQLEESQEEIkilikerEELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSlnetqgnkcEDLNQQLE 1503
Cdd:TIGR02168 912 ELRRELEELREKL-------AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDE---------EEARRRLK 975
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 1504 AQKSSLEkvEMQNVNLTqrlneTLEEMKSVAKERDELRSVEErltaDRDQLKKSLEETITK 1564
Cdd:TIGR02168 976 RLENKIK--ELGPVNLA-----AIEEYEELKERYDFLTAQKE----DLTEAKETLEEAIEE 1025
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
581-1470 |
3.06e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.06 E-value: 3.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 581 SSKVELLKEKEDQIKELQRYIDAQKSETTKTDLsysSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINE 660
Cdd:TIGR02168 209 AEKAERYKELKAELRELELALLVLRLEELREEL---EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 661 LSDSCKQ-------MENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEV 733
Cdd:TIGR02168 286 LQKELYAlaneisrLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA--------ELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 734 EEKETLQKEV-HLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIgntkddlaaSQLSQ 812
Cdd:TIGR02168 358 AELEELEAELeELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI---------EELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 813 RSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLErrdsSLQSaekeknlL 892
Cdd:TIGR02168 429 KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD----SLER-------L 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 893 TEKLQQTLEEVRALTQEKNDLK----QLQESLQTERD-------QLRSDIQDTVnmnIDTQEQLLNALESLKQHqetinm 961
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSgilgVLSELISVDEGyeaaieaALGGRLQAVV---VENLNAAKKAIAFLKQN------ 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 962 LKMKATEEMSDHLPIKGREGSSDEVEQKLDGideenllaesahtVVGSGEDHGETEEqrKIDSLLqeNSRLQQTLesiIA 1041
Cdd:TIGR02168 569 ELGRVTFLPLDSIKGTEIQGNDREILKNIEG-------------FLGVAKDLVKFDP--KLRKAL--SYLLGGVL---VV 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1042 EkeqlkmDLKENIEMSVENQEELRI--LRDELKRQQEIAAQ---EKDHVT-EKSEELSRAHERLAEIEEKLKEKNEfrnq 1115
Cdd:TIGR02168 629 D------DLDNALELAKKLRPGYRIvtLDGDLVRPGGVITGgsaKTNSSIlERRREIEELEEKIEELEEKIAELEK---- 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1116 alALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLkeyaremesaglqtKEQLNIAHANLKEYQEI 1195
Cdd:TIGR02168 699 --ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL--------------EERIAQLSKELTELEAE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1196 IKELRGSISEKEAQASSTQDTGKTnpasqgetpvpREQELLPDAEEARASAEKGSELEP-VEEHSRTAHSLTT--EGIEM 1272
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEE-----------LEAQIEQLKEELKALREALDELRAeLTLLNEEAANLRErlESLER 831
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1273 EILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLS 1352
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1353 QKEAELSSVRVQLEvttgELERKVQELceKQEQLNIKETSEVQGKMsELDHIRALLLTKDSALQSVESDRLRLNKQLEE- 1431
Cdd:TIGR02168 912 ELRRELEELREKLA----QLELRLEGL--EVRIDNLQERLSEEYSL-TLEEAEALENKIEDDEEEARRRLKRLENKIKEl 984
|
890 900 910 920
....*....|....*....|....*....|....*....|....*
gi 1958755386 1432 ------SQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTR 1470
Cdd:TIGR02168 985 gpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
862-1808 |
1.00e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.52 E-value: 1.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 862 QEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTlEEVRALtqeKNDLKQLQESLQTERdqlrsdiqdtvnmnidt 941
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKA-ERYKEL---KAELRELELALLVLR----------------- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 942 qeqllnaLESLKQHQETINMLKMKATEEMSDHlpikgrEGSSDEVEQKLDGIDEENLLAESAhtvvgsgedhgETEEQRK 1021
Cdd:TIGR02168 234 -------LEELREELEELQEELKEAEEELEEL------TAELQELEEKLEELRLEVSELEEE-----------IEELQKE 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1022 IDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAE 1101
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1102 IEEKLKEKnefrnqalalervETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAglQTKEQ 1181
Cdd:TIGR02168 370 LESRLEEL-------------EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK--LEEAE 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1182 LNIAHANLKEYQEIIKELRGSISEKEAQASSTQD-----TGKTNPASQGETPVPREQELLPDAEEARASAEKG------- 1249
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALEELREeleeaEQALDAAERELAQLQARLDSLERLQENLEGFSEGvkallkn 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1250 -----------SELEPVEEHSRTAHSLTTEGIemeILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARR 1318
Cdd:TIGR02168 515 qsglsgilgvlSELISVDEGYEAAIEAALGGR---LQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDR 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1319 tlaNHLETEEELSLARCCLKEQENKIDSLIVSLsqkeaeLSSVRVqlevttgelerkVQELCEKQEQLNIKETSE----V 1394
Cdd:TIGR02168 592 ---EILKNIEGFLGVAKDLVKFDPKLRKALSYL------LGGVLV------------VDDLDNALELAKKLRPGYrivtL 650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1395 QGkmsELDHIRALLL----TKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTR 1470
Cdd:TIGR02168 651 DG---DLVRPGGVITggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ 727
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1471 LQELQdKEYEYLvmkslnETQGNKCEDLNQQLEAQKSSLEKVEMQnvnLTQRLNETLEEMKSVAKERDELRSVEERLTAD 1550
Cdd:TIGR02168 728 ISALR-KDLARL------EAEVEQLEERIAQLSKELTELEAEIEE---LEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1551 RDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMD----QMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTL 1626
Cdd:TIGR02168 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAaterRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1627 VAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRiahldlkehqetierlmgsvaKRTEEVSDMNMELERANT 1706
Cdd:TIGR02168 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELE---------------------ELREKLAQLELRLEGLEV 936
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1707 R---LQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENL---NLAQqihqnLEEMKSISKERDDLKRMEEI 1780
Cdd:TIGR02168 937 RidnLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpvNLAA-----IEEYEELKERYDFLTAQKED 1011
|
970 980
....*....|....*....|....*...
gi 1958755386 1781 LRMEKDQLKDSLREAKFKAHQNYEETVQ 1808
Cdd:TIGR02168 1012 LTEAKETLEEAIEEIDREARERFKDTFD 1039
|
|
| Microtub_bd |
pfam16796 |
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ... |
9-143 |
2.23e-20 |
|
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.
Pssm-ID: 465274 [Multi-domain] Cd Length: 144 Bit Score: 89.59 E-value: 2.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 9 VCVRVRPLNSREEEL---GEASHIYWKTDKNaiyqsdggKSFQFDRVFHSNETTKNVYEEIAVpIISSAIQGYNGTIFAY 85
Cdd:pfam16796 24 VFARVRPELLSEAQIdypDETSSDGKIGSKN--------KSFSFDRVFPPESEQEDVFQEISQ-LVQSCLDGYNVCIFAY 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755386 86 GQTASGKTHTMmgsedclgvIPRAIHDIFQRIKKF-PEREFLLRVSYMEIYNETITDLL 143
Cdd:pfam16796 95 GQTGSGSNDGM---------IPRAREQIFRFISSLkKGWKYTIELQFVEIYNESSQDLL 144
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
574-1347 |
1.10e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 1.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 574 QDLENELSSKVELLKEkedQIKELQRYIDaQKSETTKTDLSYSseaTEDLKQAMRTLSDLDTVALDAKRESAFLRSENLE 653
Cdd:TIGR02168 192 EDILNELERQLKSLER---QAEKAERYKE-LKAELRELELALL---VLRLEELREELEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 654 LKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLlSNLELEKRITDLQKELNKEV 733
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA-QLEELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 734 EEKETLQKEVHLLSELKSlpsEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQlsQR 813
Cdd:TIGR02168 344 EKLEELKEELESLEAELE---ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR--ER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 814 SSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLT 893
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 894 EKLQQTLEEVRALTQEKNDLKQ----LQESLQTERD-------QLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINML 962
Cdd:TIGR02168 499 ENLEGFSEGVKALLKNQSGLSGilgvLSELISVDEGyeaaieaALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPL 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 963 K-MKATEEMSDHLPIKGREGSSDEVEQKLDGIDEE------NLLAESAhtVVGSGEDhgETEEQRKID------------ 1023
Cdd:TIGR02168 579 DsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsYLLGGVL--VVDDLDN--ALELAKKLRpgyrivtldgdl 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1024 ----------SLLQENSRLQQT-----LESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEK 1088
Cdd:TIGR02168 655 vrpggvitggSAKTNSSILERRreieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1089 SEELSRAHERLAEieeklkeknEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYA 1168
Cdd:TIGR02168 735 LARLEAEVEQLEE---------RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1169 REMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGEtpvprEQELLPDAEEARASAEK 1248
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE-----LEELIEELESELEALLN 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1249 gsELEPVEEHSRTAHSLTTEGIEmEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKD----DARRTL---- 1320
Cdd:TIGR02168 881 --ERASLEEALALLRSELEELSE-ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErlseEYSLTLeeae 957
|
810 820
....*....|....*....|....*..
gi 1958755386 1321 ANHLETEEELSLARCCLKEQENKIDSL 1347
Cdd:TIGR02168 958 ALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1040-1796 |
1.57e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 93.21 E-value: 1.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1040 IAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHvTEKSEELSR------AHERLAEIEEKLKEKNEFR 1113
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKekreyeGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1114 NQALALERVETERLELAQKLHENYEKMESITKERNdlKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQ 1193
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELN--KKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1194 EIIKELRGSISEKEAQASSTQDtgktnpaSQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSlttegiemE 1273
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELER-------EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD--------E 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1274 ILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQ 1353
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1354 KEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSE----------------VQGKMSELDHIRALLLTkdsALQS 1417
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVrggraveevlkasiqgVHGTVAQLGSVGERYAT---AIEV 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1418 VESDRLRLNKQLEESQEEIKILIKEREELRRAQeALHVEREQQQESIKEISTRLQELQ--------DKEYEYLVMKSLNE 1489
Cdd:TIGR02169 544 AAGNRLNNVVVEDDAVAKEAIELLKRRKAGRAT-FLPLNKMRDERRDLSILSEDGVIGfavdlvefDPKYEPAFKYVFGD 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1490 TQgnkcedLNQQLEAQKSSLEKVEMqnVNLTQRLNETLEEMKS-----------VAKERDELRSVEERLTADRDQLKKSL 1558
Cdd:TIGR02169 623 TL------VVEDIEAARRLMGKYRM--VTLEGELFEKSGAMTGgsraprggilfSRSEPAELQRLRERLEGLKRELSSLQ 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1559 EETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMD 1638
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1639 EALREERDQLRESLRQTEASDLEKQ-EKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKA 1717
Cdd:TIGR02169 775 HKLEEALNDLEARLSHSRIPEIQAElSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755386 1718 sELQLLKSKVEagETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAK 1796
Cdd:TIGR02169 855 -EIENLNGKKE--ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
657-1205 |
1.39e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.00 E-value: 1.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 657 RINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEIsklsalvdgkgllsnLELEKRITDLQKELNKEVEEK 736
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL---------------EELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 737 ETLQKEVHLLSElkslpsevetLRRELHEKSEELcviTTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSD 816
Cdd:COG1196 298 ARLEQDIARLEE----------RRRELEERLEEL---EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 817 EECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKL 896
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 897 QQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPI 976
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 977 KGREGSSDEVEqkLDGIDEENLLAESAHTVVGSGEDHGETEEQRK----------------------------------- 1021
Cdd:COG1196 525 AVAVLIGVEAA--YEAALEAALAAALQNIVVEDDEVAAAAIEYLKaakagratflpldkiraraalaaalargaigaavd 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1022 -IDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLA 1100
Cdd:COG1196 603 lVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1101 EIEEKLKEKNEfrnqALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKE 1180
Cdd:COG1196 683 ELAERLAEEEL----ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
570 580
....*....|....*....|....*
gi 1958755386 1181 QLNIAhanlkEYQEIIKELRGSISE 1205
Cdd:COG1196 759 PPDLE-----ELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1273-1809 |
8.24e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.30 E-value: 8.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1273 EILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLS 1352
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1353 QKEAELSSVRVQLEVTTGELERKVQELCEKQEQLnIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEES 1432
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEEL-EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1433 QEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEyeylvmkslnetqgnkcEDLNQQLEAQKSSLEKV 1512
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE-----------------EEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1513 EMQNVNLTQRLNETLEEMKSVAKERDELrsveeRLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQL 1592
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAEL-----LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1593 KEQLEAQNSTLESIEIEKLKltQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLD 1672
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQ--NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1673 LKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLN 1752
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755386 1753 LAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQY 1809
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
870-1570 |
1.09e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 870 ELREKLERRDSSLQSAEKEKnlLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRsdiqdtvnmnidtqEQLLNAL 949
Cdd:COG1196 217 ELKEELKELEAELLLLKLRE--LEAELEELEAELEELEAELEELEAELAELEAELEELR--------------LELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 950 ESLKQHQETINMLKMKATEEmsdhlpikgregssdeveqkldgideenllaesahtvvgsgedhgeteeQRKIDSLLQEN 1029
Cdd:COG1196 281 LELEEAQAEEYELLAELARL-------------------------------------------------EQDIARLEERR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1030 SRLQQTLESIIAEKEQLKmdlKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEK 1109
Cdd:COG1196 312 RELEERLEELEEELAELE---EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1110 NEFRNQALALERVETERLELAQKLHENYEKMES-ITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHAN 1188
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEeLEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1189 LKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDaeeARASAEKGSELEPVEEHSRTAhsLTTE 1268
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG---LRGLAGAVAVLIGVEAAYEAA--LEAA 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1269 GIEMEILALTKKLEESQKEISCLtKERSDLRRTQEALQVECA-QLKDDARRTLANHLETEEELSLARCCLKEQENKIDSL 1347
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEYL-KAAKAGRATFLPLDKIRArAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1348 IVSLSQKEAELSSVRvqLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNK 1427
Cdd:COG1196 623 LGRTLVAARLEAALR--RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1428 QLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNEtqgnkcEDLNQQLEAQKS 1507
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL------EELERELERLER 774
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 1508 SLEkvEMQNVNLT---------QRLNETLEEMKSVAKERDELRSVEERLTAD-RDQLKKSLEETitkNQELQE 1570
Cdd:COG1196 775 EIE--ALGPVNLLaieeyeeleERYDFLSEQREDLEEARETLEEAIEEIDREtRERFLETFDAV---NENFQE 842
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1011-1588 |
1.45e-16 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 86.63 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1011 EDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQ---LKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTE 1087
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQareTRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1088 KSEELSRAHERLAEIEEKLKE-KNEFRNQALALERVETERLELAQKLHENYEKME----SITKERNDLKELQES---FEI 1159
Cdd:PRK02224 277 LAEEVRDLRERLEELEEERDDlLAEAGLDDADAEAVEARREELEDRDEELRDRLEecrvAAQAHNEEAESLREDaddLEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1160 EKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETpVPREQELLPDA 1239
Cdd:PRK02224 357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL-REREAELEATL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1240 EEARASAEKGSELepveehsRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDArrt 1319
Cdd:PRK02224 436 RTARERVEEAEAL-------LEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV--- 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1320 lanhlETEEELSLarccLKEQENKIDSLIvslSQKEAELSSVRVQLEvttgELERKVQELCEKQEQlnikETSEVQGKMS 1399
Cdd:PRK02224 506 -----EAEDRIER----LEERREDLEELI---AERRETIEEKRERAE----ELRERAAELEAEAEE----KREAAAEAEE 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1400 ELDHIRALLLTKDSALQSVESDRLRLNKqLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDkey 1479
Cdd:PRK02224 566 EAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEA--- 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1480 eylvmkslnETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTAdrdqlkksLE 1559
Cdd:PRK02224 642 ---------EFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA--------LE 704
|
570 580
....*....|....*....|....*....
gi 1958755386 1560 ETITKNQELQEKGHQLSQVKADLRETMDQ 1588
Cdd:PRK02224 705 NRVEALEALYDEAEELESMYGDLRAELRQ 733
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
719-1567 |
1.67e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 86.66 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 719 EKRITDLQKELNKEVEEKETLQKEVHLLS-ELKSLPSEVETLRRELHEKSEELCVITTEREKLFS-EMAHKDSRIQGLLE 796
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEeELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 797 EIGNTKDDLAASQLSQRSSDEECQ-------ALKSLHVELKHRQEE-------VLEESERVKQELSQKTQELAQKTAEGQ 862
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAkleaeidKLLAEIEELEREIEEerkrrdkLTEEYAELKEELEDLRAELEEVDKEFA 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 863 EMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQ 942
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 943 EQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSdeVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKI 1022
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS--EERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYAT 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1023 DSLLQENSRLQqtleSIIAEKEQlkmDLKENIEMSvenqEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEI 1102
Cdd:TIGR02169 540 AIEVAAGNRLN----NVVVEDDA---VAKEAIELL----KRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEF 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1103 EEKLKEKNEFRNQalalERVETERLELAQKLHENY----------EKMESITKERNDLKELQESFEIEKKQLKEYAREME 1172
Cdd:TIGR02169 609 DPKYEPAFKYVFG----DTLVVEDIEAARRLMGKYrmvtlegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1173 SaglqTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQdtgktnpasqgetpvpREQELLpdAEEARASAEKGSEL 1252
Cdd:TIGR02169 685 G----LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE----------------KEIEQL--EQEEEKLKERLEEL 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1253 epveehsrtahslttegiEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETE-EELS 1331
Cdd:TIGR02169 743 ------------------EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElSKLE 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1332 LARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKetseVQGKMSELDHIRALLLTK 1411
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK----KEELEEELEELEAALRDL 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1412 DSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQ 1491
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAEL 960
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755386 1492 gnkcedlnQQLEAQKSSLEKVEMQnvnltqrlneTLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQE 1567
Cdd:TIGR02169 961 --------QRVEEEIRALEPVNML----------AIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1487-1795 |
6.97e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 6.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1487 LNETQGN--KCEDLNQQLEAQKSSLEK---------------VEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTA 1549
Cdd:COG1196 181 LEATEENleRLEDILGELERQLEPLERqaekaeryrelkeelKELEAELLLLKLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1550 DRDQLKKSLEEtitKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAK 1629
Cdd:COG1196 261 ELAELEAELEE---LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1630 ENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQ 1709
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1710 EKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLK 1789
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
....*.
gi 1958755386 1790 DSLREA 1795
Cdd:COG1196 498 EAEADY 503
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
776-1662 |
2.35e-15 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 82.71 E-value: 2.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 776 EREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQelsqktqela 855
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ---------- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 856 qktaegqemlnqmEELREKLERRDSSLQSAEKEKnlltEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTV 935
Cdd:pfam02463 244 -------------ELLRDEQEEIESSKQEIEKEE----EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 936 NMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGE 1015
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1016 TEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRA 1095
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1096 HERLAEIEEKLKEKNEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAG 1175
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1176 LQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPV 1255
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1256 EEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVEcaQLKDDARRTLANHLETEEELSLARC 1335
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ--ELQEKAESELAKEEILRRQLEIKKK 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1336 CLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSAL 1415
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1416 QSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEAlhvEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKC 1495
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQ---LLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEE 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1496 EDLNQQLEAQKSSLEKvemqnvnLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQL 1575
Cdd:pfam02463 862 EITKEELLQELLLKEE-------ELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1576 SQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQT 1655
Cdd:pfam02463 935 EEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
....*..
gi 1958755386 1656 EASDLEK 1662
Cdd:pfam02463 1015 TCQRLKE 1021
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
830-1615 |
2.48e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.88 E-value: 2.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 830 KHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSS----LQSAEKEKNLLTEKLQQTLEEVRA 905
Cdd:PTZ00121 1086 DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdarkAEEARKAEDAKRVEIARKAEDARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 906 L--TQEKNDLKQLQESLQTERDQLRSDIQDTvnmnidtqEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSS 983
Cdd:PTZ00121 1166 AeeARKAEDAKKAEAARKAEEVRKAEELRKA--------EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 984 DEVE----QKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLlqensrlqQTLESIIAEKEQLKMDLKENIEMSVE 1059
Cdd:PTZ00121 1238 DAEEakkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL--------KKAEEKKKADEAKKAEEKKKADEAKK 1309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1060 NQEELRiLRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETE----RLELAQKLHE 1135
Cdd:PTZ00121 1310 KAEEAK-KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEeakkKADAAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1136 NYEKMESITKERNDLK----ELQESFEIEKK--QLKEYAREMESAG-LQTKEQLNIAHANLKEYQEIIKELRGSISEKEA 1208
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKkkadELKKAAAAKKKadEAKKKAEEKKKADeAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1209 QASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAE---KGSELEPVEEHSRTAHSLTTEgiEMEILALTKKLEESQ 1285
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakkKADEAKKAEEAKKADEAKKAE--EAKKADEAKKAEEKK 1546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1286 KEISclTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQl 1365
Cdd:PTZ00121 1547 KADE--LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE- 1623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1366 EVTTGELERKVQELCEKQEQLNIKETSEVQgKMSELDHIRALLLTKDSALQSVESDRLRlnKQLEESQEEIKILIKEREE 1445
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELK-KAEEENKIKAAEEAKKAEEDKKKAEEAK--KAEEDEKKAAEALKKEAEE 1700
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1446 LRRAQEAlhveREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKssleKVEMQNVNLTQRLNE 1525
Cdd:PTZ00121 1701 AKKAEEL----KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK----KIAHLKKEEEKKAEE 1772
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1526 TLEEMKSVAKErdelrSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQmeQLKEQLEAQNSTL-E 1604
Cdd:PTZ00121 1773 IRKEKEAVIEE-----ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS--AIKEVADSKNMQLeE 1845
|
810
....*....|.
gi 1958755386 1605 SIEIEKLKLTQ 1615
Cdd:PTZ00121 1846 ADAFEKHKFNK 1856
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1011-1694 |
3.44e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.50 E-value: 3.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1011 EDHGETEEQRKIDSLLQENSRLQQtlESIIAEKEQLKMDLKENIEmSVENQEELRilRDELKRQQEIAAQEKD----HVT 1086
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAE--EAKKKAEDARKAEEARKAE-DARKAEEAR--KAEDAKRVEIARKAEDarkaEEA 1169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1087 EKSEELSRAHERLAEIE----EKLKEKNEFRNQALALERVETERLELAQKlHENYEKMESITKERNDLKELQESFEIEKK 1162
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEvrkaEELRKAEDARKAEAARKAEEERKAEEARK-AEDAKKAEAVKKAEEAKKDAEEAKKAEEE 1248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1163 QLKEYAREMESAGLQTKEQLNIAHA--------NLKEYQEIIK--ELRGSISEK---EAQASSTQDTGKTNPASQGETPV 1229
Cdd:PTZ00121 1249 RNNEEIRKFEEARMAHFARRQAAIKaeearkadELKKAEEKKKadEAKKAEEKKkadEAKKKAEEAKKADEAKKKAEEAK 1328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1230 PREQELLPDAEEARASAE--------KGSELEPVEEHSRtAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRT 1301
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEaakaeaeaAADEAEAAEEKAE-AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1302 QEALQVECAQLKDDARRTLANHLETEEELSLArcclKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCE 1381
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKK----AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1382 KQEQLNiKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQ--------EEIKIL--IKEREELRRAQE 1451
Cdd:PTZ00121 1484 KADEAK-KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKkadeakkaEEKKKAdeLKKAEELKKAEE 1562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1452 ALHVEREQQQESIKEISTRLQELQDKEYE---YLVMKSLNETQGNKCEDLNQQLEAQKSSlekvemqnvnltqrlnETLE 1528
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEariEEVMKLYEEEKKMKAEEAKKAEEAKIKA----------------EELK 1626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1529 EMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEi 1608
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE- 1705
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1609 eklKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDqlrESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVA 1688
Cdd:PTZ00121 1706 ---ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE---EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
....*.
gi 1958755386 1689 KRTEEV 1694
Cdd:PTZ00121 1780 VIEEEL 1785
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1059-1710 |
1.15e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 1.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1059 ENQEELRILRDELKRQQEIAAQEKDhVTEKSEELsRAHERLAEIEEKLKEKNEFRNQalaLERVETERLELAQKLHENYE 1138
Cdd:COG1196 186 ENLERLEDILGELERQLEPLERQAE-KAERYREL-KEELKELEAELLLLKLRELEAE---LEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1139 KMESITKERNDLKE--LQESFEIEKKQLKEYAREMESAGLQtkEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDt 1216
Cdd:COG1196 261 ELAELEAELEELRLelEELELELEEAQAEEYELLAELARLE--QDIARLEERRRELEERLEELEEELAELEEELEELEE- 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1217 gktnpasqgetpvpREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERS 1296
Cdd:COG1196 338 --------------ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1297 DLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARcclkEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKV 1376
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE----EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1377 QELcekqeqlnikeTSEVQGKMSELDHIRALLLTKDSALQSVEsdRLRLNKQLEESQEEIKILIKEREELRRAQEALHVE 1456
Cdd:COG1196 480 AEL-----------LEELAEAAARLLLLLEAEADYEGFLEGVK--AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1457 REQQQesIKEISTRLQELQdkeyeylvmkslnetqgnkcEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKE 1536
Cdd:COG1196 547 ALQNI--VVEDDEVAAAAI--------------------EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1537 RDELRSVEERLTADRDQLkksLEETITKNQELQEKGH--QLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLT 1614
Cdd:COG1196 605 ASDLREADARYYVLGDTL---LGRTLVAARLEAALRRavTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1615 QQLNENLKEMTLVAKENDDLKIM-DEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEE 1693
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEeERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
650
....*....|....*..
gi 1958755386 1694 VSDMNMELERANTRLQE 1710
Cdd:COG1196 762 LEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
834-1765 |
2.13e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.73 E-value: 2.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 834 EEVLEESERVKQELSQKTQELAQKT----AEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQE 909
Cdd:TIGR02169 194 DEKRQQLERLRREREKAERYQALLKekreYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 910 KNDL-KQLQESLQTERDQLRSDIQDTVNmnidTQEQLLNALESLKQHQETINMLKMKATEEMsdhlpikgregssDEVEQ 988
Cdd:TIGR02169 274 LEELnKKIKDLGEEEQLRVKEKIGELEA----EIASLERSIAEKERELEDAEERLAKLEAEI-------------DKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 989 KLDGIDEEnllaesahtvvgsgedhgETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILR 1068
Cdd:TIGR02169 337 EIEELERE------------------IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1069 DELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKE-KNEFRNQALALERVETERLELAQKLHENYEKMESITKER 1147
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINElEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1148 NDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELrGSISEKEAQASSTQDTGKTNPASQGET 1227
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL-GSVGERYATAIEVAAGNRLNNVVVEDD 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1228 PVPREQ-ELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLrrtqealq 1306
Cdd:TIGR02169 558 AVAKEAiELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDI-------- 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1307 vecaqlkDDARRTLANhleteeelslARCCLKEQEnkidslIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQL 1386
Cdd:TIGR02169 630 -------EAARRLMGK----------YRMVTLEGE------LFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGL 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1387 NIketsEVQGKMSELDHIRallltkdsalqsvesdrlrlnKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKE 1466
Cdd:TIGR02169 687 KR----ELSSLQSELRRIE---------------------NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1467 ISTRLQELQDKEYEYLVMKslnetqgnkcEDLNQQLEAQKSSLEKVEMQNVNLTQRLNEtlEEMKSVAKERDELRSVEER 1546
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSEL----------KELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSR 809
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1547 LTADRDQLKKSLEETITKNQELQEKGHQLsqvKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTL 1626
Cdd:TIGR02169 810 IEARLREIEQKLNRLTLEKEYLEKEIQEL---QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1627 VAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLmgsvakrtEEVSDMNMELERANT 1706
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED--------EEIPEEELSLEDVQA 958
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755386 1707 RLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIhQNLEEMK 1765
Cdd:TIGR02169 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERI-EEYEKKK 1016
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
568-1448 |
2.79e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.34 E-value: 2.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 568 HAEEYnQDLENELSSK--VELLKEKEDQIKELQRyIDAQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESA 645
Cdd:TIGR02169 209 KAERY-QALLKEKREYegYELLKEKEALERQKEA-IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 646 flrSENLELKERINELSDSCKQMEngiqmyqRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDL 725
Cdd:TIGR02169 287 ---EEQLRVKEKIGELEAEIASLE-------RSIAEKERELEDAEERLAKLEAEIDKLLAEIE--------ELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 726 QKELNKEVEEKETLQKEVHLL-SELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDD 804
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLrAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 805 LAAsqlsqrssdeecqalkslhveLKHRQEEVLEESERVKQELSQKTQELAQKTAegqemlnQMEELREKLERRDSSLQS 884
Cdd:TIGR02169 429 IAG---------------------IEAKINELEEEKEDKALEIKKQEWKLEQLAA-------DLSKYEQELYDLKEEYDR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 885 AEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDqlrsDIQDTVNMNIDTQEQLLNALESLKQH--------- 955
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ----GVHGTVAQLGSVGERYATAIEVAAGNrlnnvvved 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 956 ----QETINMLKMKATEEMSdHLPI-KGREGSSDEVEQKLDG--------IDEENLLAESAHTVVGSGEDHGETEEQRKi 1022
Cdd:TIGR02169 557 davaKEAIELLKRRKAGRAT-FLPLnKMRDERRDLSILSEDGvigfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARR- 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1023 dslLQENSRLQqTLESIIAEKEQL----KMDLKENIEMSVENQEELRILRDE---LKRQQEIAAQEKDH----VTEKSEE 1091
Cdd:TIGR02169 635 ---LMGKYRMV-TLEGELFEKSGAmtggSRAPRGGILFSRSEPAELQRLRERlegLKRELSSLQSELRRienrLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1092 LSRAHERLAEIEEKLKEKNEFRNQALA-LERVETERLELAQKLHENYEKMESITKErndLKELQESFEIEKKQLKEYARE 1170
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKErLEELEEDLSSLEQEIENVKSELKELEAR---IEELEEDLHKLEEALNDLEAR 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1171 MESAGLQTKEQLniahanLKEYQEIIKELRGSISEKEAQASStqdtgKTNPASQGETPVPREQELLPDAEEARASAEKgs 1250
Cdd:TIGR02169 788 LSHSRIPEIQAE------LSKLEEEVSRIEARLREIEQKLNR-----LTLEKEYLEKEIQELQEQRIDLKEQIKSIEK-- 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1251 elepveehsrtahslttegiemEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEEL 1330
Cdd:TIGR02169 855 ----------------------EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1331 SLARCCLKEQENKIDSLIVSLSQKEAELSsvRVQLEVTTGELERKVQELCEKQEQlniketsevqgkmseldHIRALLLT 1410
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELSEIEDPKG--EDEEIPEEELSLEDVQAELQRVEE-----------------EIRALEPV 973
|
890 900 910 920
....*....|....*....|....*....|....*....|....
gi 1958755386 1411 KDSALQSVESDRLRLNK------QLEESQEEIKILIKEREELRR 1448
Cdd:TIGR02169 974 NMLAIQEYEEVLKRLDElkekraKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
513-1248 |
8.24e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 8.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 513 LVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYNQDLENELSSKVELLKEKED 592
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 593 QIKELQRYIDaqksettktdlsyssEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGI 672
Cdd:TIGR02168 310 RLANLERQLE---------------ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 673 QMYQRQLEAKKQVQADLEKELQLAFQEISklsalvdgkgllsnlELEKRITDLQKELNKEVEEKETLQKEVHLlSELKSL 752
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIE---------------RLEARLERLEDRRERLQQEIEELLKKLEE-AELKEL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 753 PSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALK--------- 823
Cdd:TIGR02168 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKallknqsgl 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 824 ---------SLHVELKHRQ--EEVLEES----------------ERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLE 876
Cdd:TIGR02168 519 sgilgvlseLISVDEGYEAaiEAALGGRlqavvvenlnaakkaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 877 RRDSSLQSAEKEKNLLTEKLQQTLEEVR---ALTQEKNDLKQL--------------------------QESLQTERDQL 927
Cdd:TIGR02168 599 GFLGVAKDLVKFDPKLRKALSYLLGGVLvvdDLDNALELAKKLrpgyrivtldgdlvrpggvitggsakTNSSILERRRE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 928 RSDIQDTVNMNIDTQEQLLNALESLKQHQETI-NMLKMKATEEMSDHLPIKGREGSSDEVEQKldgidEENLLAESAHtv 1006
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELeEELEQLRKELEELSRQISALRKDLARLEAE-----VEQLEERIAQ-- 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1007 vgsgEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVT 1086
Cdd:TIGR02168 752 ----LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1087 EKSEELSRAHERLAEIEEKLKEKNEfrnqalALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKE 1166
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSE------DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1167 YAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTgktnpasQGETPVPREQELLPDAEEARASA 1246
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL-------TLEEAEALENKIEDDEEEARRRL 974
|
..
gi 1958755386 1247 EK 1248
Cdd:TIGR02168 975 KR 976
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
586-1286 |
9.97e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 77.47 E-value: 9.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 586 LLKEKEDQIKELQRYIDaQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESaflrsenlelkerinelSDSC 665
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLN-ESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRE-----------------SQSQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 666 KQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLsaLVDGKGLLSnlELEKRITDLQKELNKEVEEKETLQKeVHL 745
Cdd:pfam15921 141 EDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKM--MLSHEGVLQ--EIRSILVDFEEASGKKIYEHDSMST-MHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 746 LSE-------LKSLPSEVETLRRELHEKSEELCVITTERE-KLFSEMAHKDSRIQGLLEEigntkDDLAASQLSQRSSDE 817
Cdd:pfam15921 216 RSLgsaiskiLRELDTEISYLKGRIFPVEDQLEALKSESQnKIELLLQQHQDRIEQLISE-----HEVEITGLTEKASSA 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 818 ECQAlKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEML----NQMEELREKLERRDSSLQSAEKEKNL-- 891
Cdd:pfam15921 291 RSQA-NSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKrmyeDKIEELEKQLVLANSELTEARTERDQfs 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 892 -----LTEKLQQTLEEV----RALTQEKNDLKQLQESLQTER---DQLRSDIQDTvNMNIDTQEQLLNALESLKQHQETI 959
Cdd:pfam15921 370 qesgnLDDQLQKLLADLhkreKELSLEKEQNKRLWDRDTGNSitiDHLRRELDDR-NMEVQRLEALLKAMKSECQGQMER 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 960 NMLKMKATEEMSDHLP--IKGREGSSDEVEQKLDGIDEENLLAESAHTVVgSGEDHGETEEQRKIDSLLQENSRLQQTLE 1037
Cdd:pfam15921 449 QMAAIQGKNESLEKVSslTAQLESTKEMLRKVVEELTAKKMTLESSERTV-SDLTASLQEKERAIEATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1038 SIIAEKEQLKMDlKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVT---------------EKSEELSRAHERLAEI 1102
Cdd:pfam15921 528 LKLQELQHLKNE-GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTqlvgqhgrtagamqvEKAQLEKEINDRRLEL 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1103 EE--KLKEKN-------EFRNQALALERVE-----TERLELAQKLHENYEKM-ESITKERNDLKELQESFEIEKKQLKEY 1167
Cdd:pfam15921 607 QEfkILKDKKdakirelEARVSDLELEKVKlvnagSERLRAVKDIKQERDQLlNEVKTSRNELNSLSEDYEVLKRNFRNK 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1168 AREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQdtgKTNPASQGEtpVPREQELLPDAEEARASAE 1247
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQ---KQITAKRGQ--IDALQSKIQFLEEAMTNAN 761
|
730 740 750
....*....|....*....|....*....|....*....
gi 1958755386 1248 KGSELEPvEEHSRTAHSLTTEGIEMEILALTKKLEESQK 1286
Cdd:pfam15921 762 KEKHFLK-EEKNKLSQELSTVATEKNKMAGELEVLRSQE 799
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
833-1776 |
3.34e-13 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 75.85 E-value: 3.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 833 QEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLerrdSSLQSAEKEKNLLTEKLQQTLEEVRALTQEK-N 911
Cdd:TIGR00606 229 KEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEI----KALKSRKKQMEKDNSELELKMEKVFQGTDEQlN 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 912 DLKQLQESLQTERDQLRSDIQDTVNMNiDTQEQLLNALESlkQHQETINMLKMKAtEEMSDHLPIKGREGSSDEVEQKLD 991
Cdd:TIGR00606 305 DLYHNHQRTVREKERELVDCQRELEKL-NKERRLLNQEKT--ELLVEQGRLQLQA-DRHQEHIRARDSLIQSLATRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 992 GIDEE---NLLAESAHTVVGSGEDhGETEEQRKIDSLLQENSRL-QQTLESIIAEKEQLKMDLKENIEMSVENQEELRIL 1067
Cdd:TIGR00606 381 GFERGpfsERQIKNFHTLVIERQE-DEAKTAAQLCADLQSKERLkQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1068 RDELKRqqeiAAQEKDHVTEKSEELSRAHERLAeieeKLKEKNEFRNQALALERVETERLELAQKLHENYEKMESITKER 1147
Cdd:TIGR00606 460 IKELQQ----LEGSSDRILELDQELRKAERELS----KAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHT 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1148 NDLKELqESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGET 1227
Cdd:TIGR00606 532 TTRTQM-EMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHI 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1228 pvpreqellpDAEEARASAEKGSELEPVEEhsrtahSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQV 1307
Cdd:TIGR00606 611 ----------NNELESKEEQLSSYEDKLFD------VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTD 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1308 ECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLN 1387
Cdd:TIGR00606 675 ENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1388 iKETSEVQGKMSELDHIRALLLTKDSALQSVEsDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESikei 1467
Cdd:TIGR00606 755 -KVNRDIQRLKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVN---- 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1468 strlQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTqrlnETLEEMKSVAKERDEL-RSVEER 1546
Cdd:TIGR00606 829 ----QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG----TNLQRRQQFEEQLVELsTEVQSL 900
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1547 LTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESI---------------EIEKL 1611
Cdd:TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIenkiqdgkddylkqkETELN 980
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1612 KLTQQLNENLKEMTlvaKENDDLKIMDEALreERDQLRESLRQTEASDLEKQEKLRIAHLDLKEH-----QETIERLMGS 1686
Cdd:TIGR00606 981 TVNAQLEECEKHQE---KINEDMRLMRQDI--DTQKIQERWLQDNLTLRKRENELKEVEEELKQHlkemgQMQVLQMKQE 1055
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1687 VAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNL------AQQIHQN 1760
Cdd:TIGR00606 1056 HQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIyyktldQAIMKFH 1135
|
970
....*....|....*.
gi 1958755386 1761 LEEMKSISKERDDLKR 1776
Cdd:TIGR00606 1136 SMKMEEINKIIRDLWR 1151
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1408-2002 |
3.51e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.44 E-value: 3.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1408 LLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSL 1487
Cdd:TIGR04523 147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1488 NETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQ- 1566
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEq 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1567 --------ELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMD 1638
Cdd:TIGR04523 307 dwnkelksELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1639 EALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMN-------MELERANTRLQEK 1711
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTnqdsvkeLIIKNLDNTRESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1712 VQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDS 1791
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1792 LREAKFKAHQNYEETVqygkgllcggeqhctgrLREKCLRIEKLLKRYSEMANDYEclnRFSLDLEKETKTQKELSVTIK 1871
Cdd:TIGR04523 547 LNKDDFELKKENLEKE-----------------IDEKNKEIEELKQTQKSLKKKQE---EKQELIDQKEKEKKDLIKEIE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1872 TKLSLPYTQTKEIEKLLTANQRCSMEFHRILKKLKYVLSYITRIKEEQHEFINKFEMAfiqeVEKQNELQIKIQSLSQTS 1951
Cdd:TIGR04523 607 EKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI----IKKIKESKTKIDDIIELM 682
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 1952 NipsrdsqsKLSQEMDLHIEE-ILKDFSENDFLTIKTEVKQVLSNRKEITEF 2002
Cdd:TIGR04523 683 K--------DWLKELSLHYKKyITRMIRIKDLPKLEEKYKEIEKELKKLDEF 726
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
480-1147 |
5.15e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 5.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 480 EPLAEAEWSSATALLSEENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEV 559
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 560 SNLKNLIKHAEEYNQDLENELSSKVELLKEKEDQIKELQRYIDAQKSETTKTDLSYSSEATEDLKQAmrtLSDLDTVALD 639
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE---LERLEEALEE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 640 AKRESAFLRSENLELKERINELS---DSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEIS---KLSALVD---GK 710
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdeGYEAAIEaalGG 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 711 GLLS----NLELEKRITDLQKELNK----------------EVEEKETLQKEVHLLSELKSLPSEVETLR---------- 760
Cdd:TIGR02168 546 RLQAvvveNLNAAKKAIAFLKQNELgrvtflpldsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggv 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 761 ----------RELHEKSEELCVITTEREKLF--------------------SEMAHKDSRIQGLLEEIGNTKDDLAASQL 810
Cdd:TIGR02168 626 lvvddldnalELAKKLRPGYRIVTLDGDLVRpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEKALAELRK 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 811 SQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKN 890
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 891 LLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETInmlkMKATEEM 970
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI----ESLAAEI 861
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 971 SDhLPIKGREgSSDEVEQKLDGIDEENLLAESAHTVVGSgEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDL 1050
Cdd:TIGR02168 862 EE-LEELIEE-LESELEALLNERASLEEALALLRSELEE-LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1051 KENIEMsvenqeelriLRDELKRQQEIAAQEKDHVTEKSEElsrAHERLAEIEEKLKE--------KNEFRNQALALERV 1122
Cdd:TIGR02168 939 DNLQER----------LSEEYSLTLEEAEALENKIEDDEEE---ARRRLKRLENKIKElgpvnlaaIEEYEELKERYDFL 1005
|
730 740
....*....|....*....|....*...
gi 1958755386 1123 ETERLELAQ---KLHENYEKMESITKER 1147
Cdd:TIGR02168 1006 TAQKEDLTEakeTLEEAIEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
532-1416 |
1.49e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 1.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 532 KEKNELEEFEFLEQREEKdqelqlmHEVSNLKNLIKHAEEYNQDLENELSSKVELLKEKEDQIKELQryidaqksettkt 611
Cdd:TIGR02169 205 REREKAERYQALLKEKRE-------YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE------------- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 612 dlsysseatEDLKQAMRTLSDLdtvaldAKRESAFLRSENLELKERINELSDSCKQMEngiqmyqRQLEAKKQVQADLEK 691
Cdd:TIGR02169 265 ---------KRLEEIEQLLEEL------NKKIKDLGEEEQLRVKEKIGELEAEIASLE-------RSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 692 ELQLAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEVEEKETLQKEVHLL-SELKSLPSEVETLRRELHEKSEEL 770
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIE--------ELEREIEEERKRRDKLTEEYAELKEELEDLrAELEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 771 CVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAAsqlsqrssdeecqalkslhveLKHRQEEVLEESERVKQELSQK 850
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAG---------------------IEAKINELEEEKEDKALEIKKQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 851 TQELAQKTAegqemlnQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDqlrsD 930
Cdd:TIGR02169 454 EWKLEQLAA-------DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ----G 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 931 IQDTVNMNIDTQEQLLNALESLKQH-------------QETINMLKMKATEEMSdHLPI-KGREGSSDEVEQKLDG---- 992
Cdd:TIGR02169 523 VHGTVAQLGSVGERYATAIEVAAGNrlnnvvveddavaKEAIELLKRRKAGRAT-FLPLnKMRDERRDLSILSEDGvigf 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 993 ----IDEENLLAESAHTVVGSGEDHGETEEQRKidslLQENSRLqQTLESIIAEKEQL----KMDLKENIEMSVENQEEL 1064
Cdd:TIGR02169 602 avdlVEFDPKYEPAFKYVFGDTLVVEDIEAARR----LMGKYRM-VTLEGELFEKSGAmtggSRAPRGGILFSRSEPAEL 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1065 RILRDE---LKRQQEIAAQEKDH----VTEKSEELSRAHERLAEIEEKLKEKNEFRNQALA-LERVETERLELAQKLHEN 1136
Cdd:TIGR02169 677 QRLRERlegLKRELSSLQSELRRienrLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKErLEELEEDLSSLEQEIENV 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1137 YEKMESITKErndLKELQESFEIEKKQLKEYAREMESAGLQTKEQLniahanLKEYQEIIKELRGSISEKEAQASStqdt 1216
Cdd:TIGR02169 757 KSELKELEAR---IEELEEDLHKLEEALNDLEARLSHSRIPEIQAE------LSKLEEEVSRIEARLREIEQKLNR---- 823
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1217 gKTNPASQGETPVPREQELLPDAEEARASAEKgselepveehsrtahslTTEGIEMEILALTKKLEESQKEISCLTKERS 1296
Cdd:TIGR02169 824 -LTLEKEYLEKEIQELQEQRIDLKEQIKSIEK-----------------EIENLNGKKEELEEELEELEAALRDLESRLG 885
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1297 DLRRTQEALQVECAQLKdDARRTLANHLETEE----ELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRvQLEVTTGEL 1372
Cdd:TIGR02169 886 DLKKERDELEAQLRELE-RKIEELEAQIEKKRkrlsELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAELQRV 963
|
890 900 910 920
....*....|....*....|....*....|....*....|....
gi 1958755386 1373 ERKVQELcEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQ 1416
Cdd:TIGR02169 964 EEEIRAL-EPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1069-1980 |
2.51e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.25 E-value: 2.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1069 DELKRQQEIAAQEKDHVTEKSEElSRAHERLAEIEEKLKEKNEFRNQAlalERVETERLELAQKLHENYEKMESITKERN 1148
Cdd:PTZ00121 1039 DDVLKEKDIIDEDIDGNHEGKAE-AKAHVGQDEGLKPSYKDFDFDAKE---DNRADEATEEAFGKAEEAKKTETGKAEEA 1114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1149 DLKElqesfeiEKKQLKEYAREMESAgLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETP 1228
Cdd:PTZ00121 1115 RKAE-------EAKKKAEDARKAEEA-RKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1229 VPREQELlPDAEEAR--ASAEKGSELEPVEEHSRTAHSLTTEGIemeilaltKKLEESQKEIScLTKERSDLRRTQEALQ 1306
Cdd:PTZ00121 1187 VRKAEEL-RKAEDARkaEAARKAEEERKAEEARKAEDAKKAEAV--------KKAEEAKKDAE-EAKKAEEERNNEEIRK 1256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1307 VECAQLKDDARRTLAnhLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQL 1386
Cdd:PTZ00121 1257 FEEARMAHFARRQAA--IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA 1334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1387 niKETSEVQGKMSELDHIRALllTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEAlhvereqqQESIKE 1466
Cdd:PTZ00121 1335 --KKKAEEAKKAAEAAKAEAE--AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA--------KKKAEE 1402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1467 ISTRLQELQDKEYEylvmKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDElrsveer 1546
Cdd:PTZ00121 1403 DKKKADELKKAAAA----KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK------- 1471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1547 ltadRDQLKKSLEETiTKNQELQEKGHqlsqvkadlrETMDQMEQLKEQLEAQNSTLESIEIEKlkltqqlnenlkemtl 1626
Cdd:PTZ00121 1472 ----ADEAKKKAEEA-KKADEAKKKAE----------EAKKKADEAKKAAEAKKKADEAKKAEE---------------- 1520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1627 vAKENDDLKIMDEAlrEERDQLRESLRQTEASDLEKQEKLRIAHLDLK-EHQETIERLMGSVAKRTEEVSDMNMELERAN 1705
Cdd:PTZ00121 1521 -AKKADEAKKAEEA--KKADEAKKAEEKKKADELKKAEELKKAEEKKKaEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1706 TRLQEKVQELKASELQLL-KSKVEAGETKK--QLKEQGLALSKIEMENLNLAQQIHQNLEEMK-----SISKERDDLKRM 1777
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAeEAKIKAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikaaeEAKKAEEDKKKA 1677
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1778 EEILRMEKDQLKDSLREAKFKAHQNYEETVQYGKGLLCGGEQHCTGRLREKCLRIEKLLKRYSEMANDYECLNRfslDLE 1857
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK---DEE 1754
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1858 KETKTQKELSVTIKTKLSLPYTQTKEI-EKLLTANQRCSMEFHRILKKLKYVLSYITRIKEEQHEFINKFEMAFIQEVEK 1936
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIeEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKE 1834
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1937 --------QNELQIKIQSLSQTSNIPSRD--SQSKLSQEMDLhieeiLKDFSEN 1980
Cdd:PTZ00121 1835 vadsknmqLEEADAFEKHKFNKNNENGEDgnKEADFNKEKDL-----KEDDEEE 1883
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
499-1164 |
2.81e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 2.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 499 LESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYN----- 573
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEllael 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 574 QDLENELSSKVELLKEKEDQIKELQRYIDAQKSEttktdlsySSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLE 653
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEE--------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 654 LKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNLELEKRITDLQKELNKEV 733
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 734 EEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQR 813
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 814 SSDEECQALKSLHVELKHRQEEVLEESERVKQelsqktqelaqktaegqemlnQMEELREKLERRDSSLQSAEKEKNLLT 893
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAA---------------------AIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 894 EKLQQTLEEVRALtqekndlkQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINmlkmKATEEMSDH 973
Cdd:COG1196 589 AAALARGAIGAAV--------DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR----EVTLEGEGG 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 974 LPIKGREGSSDEVEQKLDGIDEENLLAESAhtvvgsgedhgetEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKEN 1053
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAE-------------RLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1054 IEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKeknefrnqalALERV----ETERLEL 1129
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE----------ALGPVnllaIEEYEEL 793
|
650 660 670
....*....|....*....|....*....|....*
gi 1958755386 1130 AQKLHENYEKMESITKERNDLKELQESFEIEKKQL 1164
Cdd:COG1196 794 EERYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
717-1200 |
5.26e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.61 E-value: 5.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 717 ELEKRITDLQKELNKEVEEKE----TLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQ 792
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREqareTRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 793 GLLEEIGNTKDDLAASQLSQrssdeecQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELR 872
Cdd:PRK02224 290 ELEEERDDLLAEAGLDDADA-------EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 873 EKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKND-------LKQLQESLQTERDQLRSDIQD------TVNMNI 939
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDapvdlgnAEDFLEELREERDELREREAEleatlrTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 940 DTQEQLLNA--------------------------------LESLKQHQETIN-----MLKMKATEEMSDHLPIKgREGS 982
Cdd:PRK02224 443 EEAEALLEAgkcpecgqpvegsphvetieedrerveeleaeLEDLEEEVEEVEerlerAEDLVEAEDRIERLEER-REDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 983 SDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQR------KIDSLLQENSRLQQTLESIIAEKEQLKmDLKENIEM 1056
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAaaeaeeEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1057 SVENQEELRILRDELKRQQEIAAQEKDHVTEKSeelsrahERLAEIEEKLKEKnefrnqalALERVETERLELAQKLHEN 1136
Cdd:PRK02224 601 IADAEDEIERLREKREALAELNDERRERLAEKR-------ERKRELEAEFDEA--------RIEEAREDKERAEEYLEQV 665
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1137 YEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGlQTKEQLNIAHANLKEYQEIIKELR 1200
Cdd:PRK02224 666 EEKLDELREERDDLQAEIGAVENELEELEELRERREALE-NRVEALEALYDEAEELESMYGDLR 728
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
719-1207 |
6.03e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.25 E-value: 6.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 719 EKRITDLQKELNKEVEEKET-LQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEmahkdsriqglLEE 797
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKfIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE-----------VKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 798 IGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQ----------------ELSQKTQELAQKTAEG 861
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEkvkelkelkekaeeyiKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 862 QEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRAL---TQEKNDLKQLQESLQTERDQLRSDIQDTVNMN 938
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELeerHELYEEAKAKKEELERLKKRLTGLTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 939 IDTQEQLLNALE-SLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETE 1017
Cdd:PRK03918 393 LEELEKAKEEIEeEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1018 EQ--------RKIDSLLQENSRL---QQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEkdhvT 1086
Cdd:PRK03918 473 EKerklrkelRELEKVLKKESELiklKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE----L 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1087 EKSEELSRaheRLAEIEEKLKEKNEFRnqALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKE 1166
Cdd:PRK03918 549 EKLEELKK---KLAELEKKLDELEEEL--AELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK 623
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1958755386 1167 YAREMEsaglQTKEQLNIAHANLKEYQEIIKELRGSISEKE 1207
Cdd:PRK03918 624 LEEELD----KAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1111-1657 |
7.08e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.22 E-value: 7.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1111 EFRNQA----LALERVETERLELAQKLHENYEKmesitKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAH 1186
Cdd:PRK02224 166 EYRERAsdarLGVERVLSDQRGSLDQLKAQIEE-----KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEAD 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1187 ANLKEY---QEIIKELRGSISEKEAQASSTQDTgKTNPASQGETPVPREQELLPDAEEARASAEkgselepVEEHSRTAH 1263
Cdd:PRK02224 241 EVLEEHeerREELETLEAEIEDLRETIAETERE-REELAEEVRDLRERLEELEEERDDLLAEAG-------LDDADAEAV 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1264 SLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENK 1343
Cdd:PRK02224 313 EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1344 IDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCE-----KQEQLNIKETSEVQ--GKMSE-------------LDH 1403
Cdd:PRK02224 393 IEELRERFGDAPVDLGNAEDFLEELREERDELREREAEleatlRTARERVEEAEALLeaGKCPEcgqpvegsphvetIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1404 IRALLLTKDSALQSVESDRLRLNKQLEESqEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylv 1483
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE--- 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1484 mksLNETQGNKCEDLNQQLEAQKSSLEKVEmqnvNLTQRLNETLEEMKSVAKERDELRSVEErLTADRDQLKKSLEETIT 1563
Cdd:PRK02224 549 ---LEAEAEEKREAAAEAEEEAEEAREEVA----ELNSKLAELKERIESLERIRTLLAAIAD-AEDEIERLREKREALAE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1564 KNQELQEKGHQLSQVKADLRETMD--QMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLkimdEAL 1641
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEFDeaRIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL----EEL 696
|
570
....*....|....*.
gi 1958755386 1642 REERDQLRESLRQTEA 1657
Cdd:PRK02224 697 RERREALENRVEALEA 712
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1022-1631 |
1.34e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1022 IDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAE 1101
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1102 IEEKLKEKNEFRNQALALERVETERLELAqklhenyEKMESITKERNDLKELQESFEIEKKQLKEYAREMESaglqtkeq 1181
Cdd:PRK03918 271 LKKEIEELEEKVKELKELKEKAEEYIKLS-------EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE-------- 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1182 lniAHANLKEYQEIIKELRGSISEKEaqasstqdtgktnpasqgetpvPREQELlpdaEEARAsaekgsELEPVEEHSRT 1261
Cdd:PRK03918 336 ---KEERLEELKKKLKELEKRLEELE----------------------ERHELY----EEAKA------KKEELERLKKR 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1262 AHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARR--TLANHLETEEELSLARCCLKE 1339
Cdd:PRK03918 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRKELLEEYTAE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1340 QENkIDSLIVSLSQKEAELSSVRVQLEVTTGE------LERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDS 1413
Cdd:PRK03918 461 LKR-IEKELKEIEEKERKLRKELRELEKVLKKeselikLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1414 ALQSVESDRLRLnKQLEESQEEIKILIKEREElrRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKslnetqgn 1493
Cdd:PRK03918 540 EIKSLKKELEKL-EELKKKLAELEKKLDELEE--ELAELLKELEELGFESVEELEERLKELEPFYNEYLELK-------- 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1494 kceDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSveerlTADRDQLKKSLEETITKNQELQEKGH 1573
Cdd:PRK03918 609 ---DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK-----KYSEEEYEELREEYLELSRELAGLRA 680
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1574 QLSQVKADLRETMDQMEQLKEQLEAQNSTLESIE-IEK-LKLTQQLNENLKEMTLVAKEN 1631
Cdd:PRK03918 681 ELEELEKRREEIKKTLEKLKEELEEREKAKKELEkLEKaLERVEELREKVKKYKALLKER 740
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
653-1205 |
1.91e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.71 E-value: 1.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 653 ELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDG----KGLLSNLE----------- 717
Cdd:PRK03918 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleelKEEIEELEkeleslegskr 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 718 -LEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKL----------FSEMAH 786
Cdd:PRK03918 256 kLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLeeeingieerIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 787 KDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLN 866
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 867 QMEELREKLERRDSSLQSA-------------EKEKNLL---TEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSd 930
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKAkgkcpvcgrelteEHRKELLeeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE- 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 931 iqdtvnmnIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSdEVEQKLDGIDEENLLAESAHTVvgsg 1010
Cdd:PRK03918 495 --------LIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG-EIKSLKKELEKLEELKKKLAEL---- 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1011 edhgeteeQRKIDSLLQENSRLQQTLESIIAEK-EQLKMDLKEnIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKS 1089
Cdd:PRK03918 562 --------EKKLDELEEELAELLKELEELGFESvEELEERLKE-LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1090 EELSRAHERLAEIEEKLKEKNEFRNQAlALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAR 1169
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEE-EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
570 580 590
....*....|....*....|....*....|....*.
gi 1958755386 1170 EMESaglqtkeqLNIAHANLKEYQEIIKELRGSISE 1205
Cdd:PRK03918 712 ELEK--------LEKALERVEELREKVKKYKALLKE 739
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1042-1807 |
1.95e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 70.00 E-value: 1.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1042 EKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALER 1121
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1122 VETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRG 1201
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1202 SISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKL 1281
Cdd:pfam02463 327 EKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1282 EESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSV 1361
Cdd:pfam02463 407 AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1362 RVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIK 1441
Cdd:pfam02463 487 ELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1442 EREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQgnkcEDLNQQLEAQKSSLEKVEMQNVNLTQ 1521
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD----EDDKRAKVVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1522 RLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNS 1601
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1602 TLESIEIEKLKLTQQLNENLKEMTlvAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLriahldLKEHQETIE 1681
Cdd:pfam02463 723 LADRVQEAQDKINEELKLLKQKID--EEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK------LKVEEEKEE 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1682 RLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQihQNL 1761
Cdd:pfam02463 795 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL--QEL 872
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1958755386 1762 EEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETV 1807
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENE 918
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
522-1205 |
4.12e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 4.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 522 RENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYNQDLENELSSKVELLKEKEDQIKELQRYI 601
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 602 DAQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVAL----DAKRESAFLRSENLELKERINELSDsckqmENGIQMYQR 677
Cdd:PTZ00121 1157 ARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELrkaeDARKAEAARKAEEERKAEEARKAED-----AKKAEAVKK 1231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 678 QLEAKKQVQADLEKELQLAFQEISKLS----ALVDGKGLLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLP 753
Cdd:PTZ00121 1232 AEEAKKDAEEAKKAEEERNNEEIRKFEearmAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 754 SEVETlRRELHEKSEELCVITTEREKLFSEMAHKDSRIQgllEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQ 833
Cdd:PTZ00121 1312 EEAKK-ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK---AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 834 EEV--LEESERVKQELSQKTQELAQKTAEGQ---------EMLNQMEELREKLERRDSSLQSAEK-EKNLLTEKLQQTLE 901
Cdd:PTZ00121 1388 EEKkkADEAKKKAEEDKKKADELKKAAAAKKkadeakkkaEEKKKADEAKKKAEEAKKADEAKKKaEEAKKAEEAKKKAE 1467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 902 EVRALTQEK---------NDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSD 972
Cdd:PTZ00121 1468 EAKKADEAKkkaeeakkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 973 HLPIKGREGSSDEVEQKldGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSL-LQENSRLQQTLESIIAEKEQLKMD-L 1050
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKK--KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMkLYEEEKKMKAEEAKKAEEAKIKAEeL 1625
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1051 KENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETERL--- 1127
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKkae 1705
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1128 ELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISE 1205
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
838-1201 |
5.99e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 5.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 838 EESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQ 917
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 918 ESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQ-ETINMLKMKATEEMSDhlpikgREGSSDEVEQKLDGIDEE 996
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSR------IEARLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 997 NLLAESAHtvvgsgedhgETEEQRKIDSLLQENSRlQQTLESIIAEKEQLKMDLKE-------------NIEMSVEN-QE 1062
Cdd:TIGR02169 828 KEYLEKEI----------QELQEQRIDLKEQIKSI-EKEIENLNGKKEELEEELEEleaalrdlesrlgDLKKERDElEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1063 ELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETERLELAQKLHE------- 1135
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAlepvnml 976
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1136 NYEKMESITKERNDLKELQESFEIEKKQLKE----YAREMESAGLQTKEQLNiahanlKEYQEIIKELRG 1201
Cdd:TIGR02169 977 AIQEYEEVLKRLDELKEKRAKLEEERKAILErieeYEKKKREVFMEAFEAIN------ENFNEIFAELSG 1040
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1017-1700 |
6.08e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 68.40 E-value: 6.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1017 EEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIemsvenQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAH 1096
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAE------LEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1097 -----ERLAEIEEKLKEKNEfrnqalALERVETERLELAQKLH----ENYEKMESITKERNDLKELQESFEIEKKQLKEY 1167
Cdd:COG4913 333 rgnggDRLEQLEREIERLER------ELEERERRRARLEALLAalglPLPASAEEFAALRAEAAALLEALEEELEALEEA 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1168 AREMESAglqtKEQLNIAHANLKEYQEIIKELRGSISEKEAQASS--TQDTGKTnpasqgETPVPREQELL---PDAEEA 1242
Cdd:COG4913 407 LAEAEAA----LRDLRRELRELEAEIASLERRKSNIPARLLALRDalAEALGLD------EAELPFVGELIevrPEEERW 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1243 RASAEK--GSE--------------LEPVEEHsRTAHSLTTEGIEMEILA----------LTKKLE-------------- 1282
Cdd:COG4913 477 RGAIERvlGGFaltllvppehyaaaLRWVNRL-HLRGRLVYERVRTGLPDperprldpdsLAGKLDfkphpfrawleael 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1283 ESQKEISCLTKERsDLRRTQEALQVEC-------AQLKDDARRTLANHL---ETEEELSLARCCLKEQENKIDSLIVSLS 1352
Cdd:COG4913 556 GRRFDYVCVDSPE-ELRRHPRAITRAGqvkgngtRHEKDDRRRIRSRYVlgfDNRAKLAALEAELAELEEELAEAEERLE 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1353 QKEAELSSVRVQLEvttgeLERKVQELCEkqEQLNIKET-SEVQGKMSELDHIRAllltkdsalqsvESDRLR-LNKQLE 1430
Cdd:COG4913 635 ALEAELDALQERRE-----ALQRLAEYSW--DEIDVASAeREIAELEAELERLDA------------SSDDLAaLEEQLE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1431 ESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMK--------SLNETQGNKCEDLNQQL 1502
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleerfaaaLGDAVERELRENLEERI 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1503 EAQKSSLEKVEMQNVNLTQRLNE-----------TLEEMKSVAKERDELRsvEERLTADRDQLKKSLEEtitknQELQEK 1571
Cdd:COG4913 776 DALRARLNRAEEELERAMRAFNRewpaetadldaDLESLPEYLALLDRLE--EDGLPEYEERFKELLNE-----NSIEFV 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1572 GHQLSQVKADLRETMDQMEQLkeqleaqNSTLESIEieklkltqqLNENlKEMTLVAKENddlkiMDEALREERDQLRES 1651
Cdd:COG4913 849 ADLLSKLRRAIREIKERIDPL-------NDSLKRIP---------FGPG-RYLRLEARPR-----PDPEVREFRQELRAV 906
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1958755386 1652 LRQTEASDLEKQEKlriahldlkeHQETIERLMGSVAKRTEEVSDMNME 1700
Cdd:COG4913 907 TSGASLFDEELSEA----------RFAALKRLIERLRSEEEESDRRWRA 945
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1011-1796 |
6.47e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.07 E-value: 6.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1011 EDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSE 1090
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1091 ELSRAHERLAEIEEKLKEKNEFRNQALALERVETERLELAQKlhENYEKMESITKERNDLKELQESFEIEKKQLKEYARE 1170
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK--EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1171 MESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASstqdtgktnPASQGETPVPREQELLPDAEE-ARASAEKG 1249
Cdd:pfam02463 358 EEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE---------LKSEEEKEAQLLLELARQLEDlLKEEKKEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1250 SELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEE 1329
Cdd:pfam02463 429 LEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1330 LSLARCCLKEQE-NKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALL 1408
Cdd:pfam02463 509 LKVLLALIKDGVgGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLK 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1409 LTKDSALQSVESDRLRLNKqleESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEyEYLVMKSLN 1488
Cdd:pfam02463 589 LPLKSIAVLEIDPILNLAQ---LDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLE-EGLAEKSEV 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1489 ETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDeLRSVEERLTADRDQLKKSLEETITKNQEL 1568
Cdd:pfam02463 665 KASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKK-LKLEAEELLADRVQEAQDKINEELKLLKQ 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1569 QEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQL 1648
Cdd:pfam02463 744 KIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1649 RESLRQTEASDLEKQEKLRIAHLDLKEHQEtierlmgsvaKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVE 1728
Cdd:pfam02463 824 IEQEEKIKEEELEELALELKEEQKLEKLAE----------EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEE 893
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755386 1729 AGETKKQLKEQGLALS--------KIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAK 1796
Cdd:pfam02463 894 KEKEEKKELEEESQKLnlleekenEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAK 969
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1293-1809 |
6.86e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.14 E-value: 6.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1293 KERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSlIVSLSQKEAELSSVRVQLEVTTGEL 1372
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREE-LETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1373 ERKVQELCEKQEQLNiketsevqgkmSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIkilikerEELRRAQEA 1452
Cdd:PRK02224 278 AEEVRDLRERLEELE-----------EERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL-------EECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1453 LHVEREQQQESIKEISTRLQELQDKEYEylvMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKS 1532
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELREEAAE---LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1533 VAKERDELRSVEERLTADRdqlkKSLEETITKNQELQE-----------KGHQLSQVKADLRETMDQMEQLKEQLEAQNS 1601
Cdd:PRK02224 417 LREERDELREREAELEATL----RTARERVEEAEALLEagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1602 TLESiEIEKL----KLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQ 1677
Cdd:PRK02224 493 EVEE-RLERAedlvEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1678 ETIERLMGSVAKRTEEVSDMNM---------ELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKE--QGLALSKI 1746
Cdd:PRK02224 572 EEVAELNSKLAELKERIESLERirtllaaiaDAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefDEARIEEA 651
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 1747 EMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLkDSLREakfkAHQNYEETVQY 1809
Cdd:PRK02224 652 REDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL-EELRE----RREALENRVEA 709
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
814-1459 |
8.13e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 8.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 814 SSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLT 893
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 894 EKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRsdiqdtvnmNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDh 973
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIE---------ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 974 lpIKGREGSsdeVEQKLDGIDEEnlLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKEn 1053
Cdd:PRK03918 312 --IEKRLSR---LEEEINGIEER--IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG- 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1054 iemsvENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKeKNEFRNQALALERVETERLELaqkl 1133
Cdd:PRK03918 384 -----LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK-KAKGKCPVCGRELTEEHRKEL---- 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1134 henyekMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLniahaNLKEYQEIIKELRGSISEKEAqasst 1213
Cdd:PRK03918 454 ------LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI-----KLKELAEQLKELEEKLKKYNL----- 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1214 qdtgktnpasqgetpvpreQELLPDAEEARASAEKGSELEpvEEHSRTAHSLTtegiemEILALTKKLEESQKEISCLTK 1293
Cdd:PRK03918 518 -------------------EELEKKAEEYEKLKEKLIKLK--GEIKSLKKELE------KLEELKKKLAELEKKLDELEE 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1294 ERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLivslsqkEAELSSVRVQLEVTTGELE 1373
Cdd:PRK03918 571 ELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKL-------EEELDKAFEELAETEKRLE 643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1374 RKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEAL 1453
Cdd:PRK03918 644 ELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
|
....*.
gi 1958755386 1454 HVEREQ 1459
Cdd:PRK03918 724 EELREK 729
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1337-1936 |
9.00e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.40 E-value: 9.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1337 LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERkVQELCEKQEQLNiKETSEVQGKMSELD----HIRALLLTKD 1412
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKE-LEELKEEIEELE-KELESLEGSKRKLEekirELEERIEELK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1413 SALQSVESDRLRLnKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEyeylvmkslnetqg 1492
Cdd:PRK03918 273 KEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE-------------- 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1493 NKCEDLNQQLEAQKSSLEKVEmQNVNLTQRLNETLEEMKSVAKERDELRSveERLTADRDQLKKSLEETITKNQELQEKG 1572
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1573 HQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLkltqqLNENLKEMTLVAKEnddLKIMDEALREerdqLRESL 1652
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEL-----LEEYTAELKRIEKE---LKEIEEKERK----LRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1653 RQTEaSDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELK--ASELQLLKSKVEAG 1730
Cdd:PRK03918 483 RELE-KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKkeLEKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1731 ETKKQLKEQGLA--LSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKfKAHQNYEETvq 1808
Cdd:PRK03918 562 EKKLDELEEELAelLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD-KAFEELAET-- 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1809 ygkgllcggeqhcTGRLREKCLRIEKLLKRYSE-----MANDYECLNRFSLDLEKETKTQKELSVTIKTKLSLPYTQTKE 1883
Cdd:PRK03918 639 -------------EKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 1884 IEKlltanqrcsmeFHRILKKLKYVLSYITRIKEEQHEFINKFEMAFIQEVEK 1936
Cdd:PRK03918 706 REK-----------AKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
828-1677 |
1.23e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.45 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 828 ELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELRekleRRDSslQSAEKEKNllteKLQQTLEEVRALT 907
Cdd:pfam15921 89 DLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIR----RRES--QSQEDLRN----QLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 908 QEKNDLkqlQESLQTERDQLRSDIQdtvnmnidTQEQLLNALESLKQHQETINMLKMKATEEMSDhLPIKGREGSSDEVE 987
Cdd:pfam15921 159 CLKEDM---LEDSNTQIEQLRKMML--------SHEGVLQEIRSILVDFEEASGKKIYEHDSMST-MHFRSLGSAISKIL 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 988 QKLDgiDEENLLAESAHTVvgsgEDHGET---EEQRKIDSLLQENsrlQQTLESIIAEKEQLKMDLKENIEMSVEN---- 1060
Cdd:pfam15921 227 RELD--TEISYLKGRIFPV----EDQLEAlksESQNKIELLLQQH---QDRIEQLISEHEVEITGLTEKASSARSQansi 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1061 QEELRILRDELKRQQEIAAQekdHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVE-TE-RLELAQKLHENYE 1138
Cdd:pfam15921 298 QSQLEIIQEQARNQNSMYMR---QLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSElTEaRTERDQFSQESGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1139 KMESITKERNDLKELQESFEIEKKQLKE-YAREMESAGLQTKEQLNIAHANLkEYQEIIKELRGSISEKEAQASstqdtg 1217
Cdd:pfam15921 375 LDDQLQKLLADLHKREKELSLEKEQNKRlWDRDTGNSITIDHLRRELDDRNM-EVQRLEALLKAMKSECQGQME------ 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1218 KTNPASQGEtpvpreQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSD 1297
Cdd:pfam15921 448 RQMAAIQGK------NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITK 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1298 LRRtqealqvecaqlKDDARRTLANHLETEEELslarccLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTT---GELER 1374
Cdd:pfam15921 522 LRS------------RVDLKLQELQHLKNEGDH------LRNVQTECEALKLQMAEKDKVIEILRQQIENMTqlvGQHGR 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1375 KVQELCEKQEQLNiketSEVQGKMSELDHIRALLLTKDSALQSVESdrlrlnKQLEESQEEIKILIKEREELRRAQEAlh 1454
Cdd:pfam15921 584 TAGAMQVEKAQLE----KEINDRRLELQEFKILKDKKDAKIRELEA------RVSDLELEKVKLVNAGSERLRAVKDI-- 651
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1455 veREQQQESIKEISTRLQELQDKEYEYLVMKslnetqgnkcEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVA 1534
Cdd:pfam15921 652 --KQERDQLLNEVKTSRNELNSLSEDYEVLK----------RNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSME 719
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1535 KERDELRSV----EERLTADRDQLkksleetitknQELQEKghqlsqvkadlretmdqMEQLKEQLEAQNSTLESIEIEK 1610
Cdd:pfam15921 720 GSDGHAMKVamgmQKQITAKRGQI-----------DALQSK-----------------IQFLEEAMTNANKEKHFLKEEK 771
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1611 LKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQL-----RESLRQTEASD-LEKQE----KLRIAH-LDLKEHQ 1677
Cdd:pfam15921 772 NKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMevaldKASLQFAECQDiIQRQEqesvRLKLQHtLDVKELQ 849
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
561-1182 |
1.36e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 561 NLKNLIKHAEEYNQDLENELSSKV---ELLKEKEDQIKELQRYIDAQKSETTKTdlsysSEATEDLKQAMRTLSDLdtva 637
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTEnieELIKEKEKELEEVLREINEISSELPEL-----REELEKLEKEVKELEEL---- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 638 ldaKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLeKELQLAFQEISKLSALVDgkgllsnlE 717
Cdd:PRK03918 237 ---KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYE--------E 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 718 LEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELcvitTEREKLFSEMAHKDSRIQgllee 797
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL----EERHELYEEAKAKKEELE----- 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 798 igntkddlaasQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSqktqELAQKTAEGQEMLNQMEELREK--- 874
Cdd:PRK03918 376 -----------RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG----ELKKEIKELKKAIEELKKAKGKcpv 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 875 -------------LERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQeSLQTERDQLRSDIQDTVNMNIDT 941
Cdd:PRK03918 441 cgrelteehrkelLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI-KLKELAEQLKELEEKLKKYNLEE 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 942 QEQLLNALESLKqhqETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEE--NLLAESAHTVVGSGED-HGETEE 1018
Cdd:PRK03918 520 LEKKAEEYEKLK---EKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEElaELLKELEELGFESVEElEERLKE 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1019 QRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEK-DHVTEKSEELSRAHE 1097
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELA 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1098 RLAEIEEKLKEKNEfrnqalalervetERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQ 1177
Cdd:PRK03918 677 GLRAELEELEKRRE-------------EIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALS 743
|
....*
gi 1958755386 1178 TKEQL 1182
Cdd:PRK03918 744 KVGEI 748
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
808-1611 |
1.44e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 66.92 E-value: 1.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 808 SQLSQRSSDEECQalksLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEE---LREKLERRD---SS 881
Cdd:TIGR00618 96 CTRSHRKTEQPEQ----LYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFaqfLKAKSKEKKellMN 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 882 LQSAEKEKNLLTEKLQQTLE---EVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQET 958
Cdd:TIGR00618 172 LFPLDQYTQLALMEFAKKKSlhgKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREA 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 959 INMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDE----ENLLAESAHTV---VGSGEDHGETEEQ-RKIDSLLQENS 1030
Cdd:TIGR00618 252 QEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRarkaAPLAAHIKAVTqieQQAQRIHTELQSKmRSRAKLLMKRA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1031 RLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRI---------LRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAE 1101
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIreiscqqhtLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQAT 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1102 IEEKLKEKNEFRNQALALERVETERLELAQKLHENYEKMESITKERN-DLKELQESFEIEKKQLKeyarEMESAGLQTKE 1180
Cdd:TIGR00618 412 IDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKiHLQESAQSLKEREQQLQ----TKEQIHLQETR 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1181 QLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTG-KTNPASQGETPVPREQEllpdaEEARASAEKGSELEPVEEHS 1259
Cdd:TIGR00618 488 KKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGpLTRRMQRGEQTYAQLET-----SEEDVYHQLTSERKQRASLK 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1260 RTAHSlttegIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLanhLETEEELSLARCCLKE 1339
Cdd:TIGR00618 563 EQMQE-----IQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL---RKLQPEQDLQDVRLHL 634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1340 QEnkidsliVSLSQKEAELSSVRVQLEVTTGELE---RKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQ 1416
Cdd:TIGR00618 635 QQ-------CSQELALKLTALHALQLTLTQERVRehaLSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLR 707
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1417 SVESDRLRLNKQLEESQEEIKILIKERE-ELRRAQEALHVEREQQQESIKEistrLQELQDKEYEYLVMkslNETQGNKC 1495
Cdd:TIGR00618 708 ELETHIEEYDREFNEIENASSSLGSDLAaREDALNQSLKELMHQARTVLKA----RTEAHFNNNEEVTA---ALQTGAEL 780
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1496 EDLNQQLEAQKSSLEKvemqnvnLTQRLNETLEEMKSVAKERDELRSVE-ERLTADRDQLKKSLEETITKNQEL---QEK 1571
Cdd:TIGR00618 781 SHLAAEIQFFNRLREE-------DTHLLKTLEAEIGQEIPSDEDILNLQcETLVQEEEQFLSRLEEKSATLGEIthqLLK 853
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 1958755386 1572 GHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKL 1611
Cdd:TIGR00618 854 YEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDAL 893
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
716-1054 |
1.59e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 716 LELEKRITDLQKELNKEVEEKETLQKEVHLLS---------------ELKSLPSEVETLRRELHEKSEELCVITTEREKL 780
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSqelsdasrkigeiekEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 781 FSEMAHKDSRIQGLLEEIGNTKDDLAAsqLSQRSSDEECQALKSLHVELKH---RQEEVLEESErvkQELSQKTQELAQK 857
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALND--LEARLSHSRIPEIQAELSKLEEevsRIEARLREIE---QKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 858 TAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQD---T 934
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEleaQ 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 935 VNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVgsGEDHG 1014
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEV--LKRLD 989
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1958755386 1015 ETEEQRkiDSLLQENSRLQQTLESIIAEKEQLKMDLKENI 1054
Cdd:TIGR02169 990 ELKEKR--AKLEEERKAILERIEEYEKKKREVFMEAFEAI 1027
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
515-1366 |
2.22e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 2.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 515 LDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYNQDLENELSSKVELLK---EKE 591
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEkeeEKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 592 DQIKELQRYIDAQKSETTKTDLSYSSEATEDLKQamrtLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENG 671
Cdd:pfam02463 268 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE----LLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 672 IQMYQRQLEAKKQVQADLEKELQLAFQEISKLsalvdgkgLLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELks 751
Cdd:pfam02463 344 LKELEIKREAEEEEEEELEKLQEKLEQLEEEL--------LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL-- 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 752 lpSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKH 831
Cdd:pfam02463 414 --ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 832 RQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEE----VRALT 907
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEErqklVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 908 QEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALES-LKQHQETINMLKMKATEEMSDHLPIKGREGSSDEV 986
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAdEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 987 EQKLDGIDEENLLAEsahtvvgsgEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRI 1066
Cdd:pfam02463 652 VSLEEGLAEKSEVKA---------SLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1067 LRDELKRQQEIAAQEKDHVTEKSEELSrahERLAEIEEKLKEKNEFRNQALALERVETERLELAQKLHENYEKmesITKE 1146
Cdd:pfam02463 723 LADRVQEAQDKINEELKLLKQKIDEEE---EEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK---EEKL 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1147 RNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGE 1226
Cdd:pfam02463 797 KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKE 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1227 TPVPREQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEgIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQ 1306
Cdd:pfam02463 877 EELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENE-IEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1307 VECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLE 1366
Cdd:pfam02463 956 EEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEET 1015
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
587-1199 |
2.35e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 66.28 E-value: 2.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 587 LKEKEDQIKELQRYIDAQKSETTKTDLsysseatEDLKQAMRTLSDLdtvaldakRESAFLRSENLELKERINELSDSCK 666
Cdd:pfam05483 101 LKQKENKLQENRKIIEAQRKAIQELQF-------ENEKVSLKLEEEI--------QENKDLIKENNATRHLCNLLKETCA 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 667 QMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNLELE---KRITDLQKELNKEVEEKEtlqKEV 743
Cdd:pfam05483 166 RSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKedhEKIQHLEEEYKKEINDKE---KQV 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 744 HLL----SELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIgntKDDLAASQLSQRSSDEEC 819
Cdd:pfam05483 243 SLLliqiTEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI---KMSLQRSMSTQKALEEDL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 820 QALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEML-----------NQMEELREKLERRDSSLQSAEKE 888
Cdd:pfam05483 320 QIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLrteqqrlekneDQLKIITMELQKKSSELEEMTKF 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 889 KN---LLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMK 965
Cdd:pfam05483 400 KNnkeVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 966 ATEEMSDHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQ 1045
Cdd:pfam05483 480 LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQ 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1046 LKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETE 1125
Cdd:pfam05483 560 KGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVN 639
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1126 RLELaqKLHENYEKMESITkerndlKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKEL 1199
Cdd:pfam05483 640 KLEL--ELASAKQKFEEII------DNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEM 705
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1119-1728 |
4.10e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.47 E-value: 4.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1119 LERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIike 1198
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL--- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1199 lRGSISEKEAQASSTqdtgktnpasqgETPVPREQELLPDAEEARasAEKGSELEPVEEHSRTAHSLttEGIEMEILALT 1278
Cdd:PRK03918 237 -KEEIEELEKELESL------------EGSKRKLEEKIRELEERI--EELKKEIEELEEKVKELKEL--KEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1279 KKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRtLANHLETEEELSLARCCLKEQENKIDslivSLSQKEAEL 1358
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER-LEELKKKLKELEKRLEELEERHELYE----EAKAKKEEL 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1359 SSVRVQLE-VTTGELERKVQELCEKQEQLNiKETSEVQGKMSELDHIRALLLTKDSALQSV------------ESDRLRL 1425
Cdd:PRK03918 375 ERLKKRLTgLTPEKLEKELEELEKAKEEIE-EEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgreltEEHRKEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1426 nkqLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQ 1505
Cdd:PRK03918 454 ---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1506 KSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLK-------KSLEETITKNQELQEKGHQLSQV 1578
Cdd:PRK03918 531 KEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEelgfesvEELEERLKELEPFYNEYLELKDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1579 KADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTlvAKENDDLKIMDEALREERDQLRESLRQTEAS 1658
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKR 688
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1659 DLEKQEKLRiahlDLKEHQETIErlmgsvaKRTEEVSDMNMELERAnTRLQEKVQELKASELQLLKSKVE 1728
Cdd:PRK03918 689 REEIKKTLE----KLKEELEERE-------KAKKELEKLEKALERV-EELREKVKKYKALLKERALSKVG 746
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1406-1623 |
6.68e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 6.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1406 ALLLTKDSALQSVESDRLRlnKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylVMK 1485
Cdd:COG4942 8 ALLLALAAAAQADAAAEAE--AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA--LEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1486 SLNETQGNKcEDLNQQLEAQKSSLEKV--EMQNVNLTQRLNETL--EEMKSVAKERDELRSVEERLTADRDQLKKSLEET 1561
Cdd:COG4942 84 ELAELEKEI-AELRAELEAQKEELAELlrALYRLGRQPPLALLLspEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 1562 ITKNQELQEKGHQLSQVKADLREtmdQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKE 1623
Cdd:COG4942 163 AALRAELEAERAELEALLAELEE---ERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1150-1792 |
1.47e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.60 E-value: 1.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1150 LKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAhanLKEYQEIIKELrgsISEKEAQAsstqdTGKTNPASQGETPV 1229
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---LQQHQDRIEQL---ISEHEVEI-----TGLTEKASSARSQA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1230 PREQELLPDAEEaRASAEKGSELEPVEEHSRTAHSLTTEGIEMEILaLTKKLEESQKEISCLTKERSDLRRTQEALQVEC 1309
Cdd:pfam15921 295 NSIQSQLEIIQE-QARNQNSMYMRQLSDLESTVSQLRSELREAKRM-YEDKIEELEKQLVLANSELTEARTERDQFSQES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1310 AQLKDDARRTLANHLETEEELSLArcclKEQENKI------DSLIVSLSQKEAELSSVRVQ-LEVTTGELERKVQELCEK 1382
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLE----KEQNKRLwdrdtgNSITIDHLRRELDDRNMEVQrLEALLKAMKSECQGQMER 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1383 QeqlnikeTSEVQGKMSELDHIRAL---LLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQ 1459
Cdd:pfam15921 449 Q-------MAAIQGKNESLEKVSSLtaqLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITK 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1460 QQEsikEISTRLQELQDKEYEYLVMKSLNetqgNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDE 1539
Cdd:pfam15921 522 LRS---RVDLKLQELQHLKNEGDHLRNVQ----TECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1540 LRsveerltadrdqlkkslEETITKNQELQEkghqlsqvkadLRETMDQMEQLKEQLEAQNSTLesiEIEKLKLTQQLNE 1619
Cdd:pfam15921 595 LE-----------------KEINDRRLELQE-----------FKILKDKKDAKIRELEARVSDL---ELEKVKLVNAGSE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1620 NLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHqetierlMGSVAKRTEEVSDMNM 1699
Cdd:pfam15921 644 RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQ-------LKSAQSELEQTRNTLK 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1700 ELERANTRLQeKVQELKASELQLLKSKVEAGETKKQLKEQglALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEE 1779
Cdd:pfam15921 717 SMEGSDGHAM-KVAMGMQKQITAKRGQIDALQSKIQFLEE--AMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE 793
|
650
....*....|...
gi 1958755386 1780 ILRMEKDQLKDSL 1792
Cdd:pfam15921 794 VLRSQERRLKEKV 806
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
497-905 |
2.34e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 2.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYNQDL 576
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 577 ENELSSKVELLKEKEDQIKELQRYIDAQKSETTKtdlsysseatedlkqamrtlsdldtvaldakresafLRSENLELKE 656
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKA------------------------------------LREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 657 RINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEVEEK 736
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE--------ELEELIEELESELEALLNER 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 737 ETLQKEVHLLSelkslpSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDdlaasQLSQRSSD 816
Cdd:TIGR02168 883 ASLEEALALLR------SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE-----RLSEEYSL 951
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 817 EEcQALKSLHVELKHRQEEVLEESERVKQELSQ-------KTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEk 889
Cdd:TIGR02168 952 TL-EEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE- 1029
|
410
....*....|....*.
gi 1958755386 890 nlLTEKLQQTLEEVRA 905
Cdd:TIGR02168 1030 --ARERFKDTFDQVNE 1043
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1033-1774 |
3.64e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 62.37 E-value: 3.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1033 QQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEF 1112
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1113 RNQALALERVETERLELAQKLHENYEKMESITKErndlkELQESFEIEKKQLKEYAREM------------ESAGL-QTK 1179
Cdd:TIGR00606 268 DNEIKALKSRKKQMEKDNSELELKMEKVFQGTDE-----QLNDLYHNHQRTVREKERELvdcqreleklnkERRLLnQEK 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1180 EQLNIAHANLKEYQEIIKE--LRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEPVE- 1256
Cdd:TIGR00606 343 TELLVEQGRLQLQADRHQEhiRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKEr 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1257 ------EHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTqeaLQVECAQLKDDARRTLANHLETEEEL 1330
Cdd:TIGR00606 423 lkqeqaDEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRI---LELDQELRKAERELSKAEKNSLTETL 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1331 SLARCCLKEQENKIDSLIVSLSQKEAEL---SSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEV------------- 1394
Cdd:TIGR00606 500 KKEVKSLQNEKADLDRKLRKLDQEMEQLnhhTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkkqledwl 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1395 QGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEikiLIKEREELRRA--QEALHVEREQQQESIKEISTRLQ 1472
Cdd:TIGR00606 580 HSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ---LSSYEDKLFDVcgSQDEESDLERLKEEIEKSSKQRA 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1473 ELQDKE--YEYLVMKSLNETQG--NKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLT 1548
Cdd:TIGR00606 657 MLAGATavYSQFITQLTDENQSccPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQ 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1549 ADRDQLKKSLEETITKNQELQEkghQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKlKLTQQLNENLKEMTLVA 1628
Cdd:TIGR00606 737 SIIDLKEKEIPELRNKLQKVNR---DIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIME-RFQMELKDVERKIAQQA 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1629 KEND--DLKIMDEALREERDQLRESLRqTEASDLEKQEKL------RIAHLDLKEHQETIERLmgSVAKRTEEVSDMNME 1700
Cdd:TIGR00606 813 AKLQgsDLDRTVQQVNQEKQEKQHELD-TVVSKIELNRKLiqdqqeQIQHLKSKTNELKSEKL--QIGTNLQRRQQFEEQ 889
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1701 LERANTRLQEKVQELKASELQLLKskvEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDL 1774
Cdd:TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSP---LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDI 960
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1311-1794 |
1.98e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 1.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1311 QLKDDARR-TLANHLETEEELSLARCC------LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELErkvQELCEKQ 1383
Cdd:pfam15921 86 QVKDLQRRlNESNELHEKQKFYLRQSVidlqtkLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELE---AAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1384 EQLNIKETsevqgkmsELDHIRALLLTKDSALQSVESdrlrlnkqleesqeeikILIK-EREELRRAQEALHVEREQQQE 1462
Cdd:pfam15921 163 DMLEDSNT--------QIEQLRKMMLSHEGVLQEIRS-----------------ILVDfEEASGKKIYEHDSMSTMHFRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1463 SIKEISTRLQELqDKEYEYLvmkslnetqGNKCEDLNQQLEAQKS-SLEKVEMqnvnLTQRLNETLEEMksVAKERDELR 1541
Cdd:pfam15921 218 LGSAISKILREL-DTEISYL---------KGRIFPVEDQLEALKSeSQNKIEL----LLQQHQDRIEQL--ISEHEVEIT 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1542 SVEERLTADRDQ---LKKSLE--ETITKNQ------ELQEKGHQLSQVKADLRETM----DQMEQLKEQLEAQNSTLESI 1606
Cdd:pfam15921 282 GLTEKASSARSQansIQSQLEiiQEQARNQnsmymrQLSDLESTVSQLRSELREAKrmyeDKIEELEKQLVLANSELTEA 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1607 EIEKLKLTQQ--------------LNENLKEMTLVAKENDDLKIMDEALREERDQLReslRQTEASDLEKQEKLRIAHLD 1672
Cdd:pfam15921 362 RTERDQFSQEsgnlddqlqklladLHKREKELSLEKEQNKRLWDRDTGNSITIDHLR---RELDDRNMEVQRLEALLKAM 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1673 LKEHQETIERLMGSVAKRTE---EVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEME 1749
Cdd:pfam15921 439 KSECQGQMERQMAAIQGKNEsleKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE 518
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 1750 NLNLAQQIHQNLEEMKSISKERDDLKRME---EILRM---EKDQLKDSLRE 1794
Cdd:pfam15921 519 ITKLRSRVDLKLQELQHLKNEGDHLRNVQtecEALKLqmaEKDKVIEILRQ 569
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
980-1716 |
2.60e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 59.85 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 980 EGSSDEVEQKLDGiDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVE 1059
Cdd:pfam12128 209 DGVVPPKSRLNRQ-QVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1060 NQEELRILRDELKR-----QQEIAAQEKDhVTEKSEELSRAHERLAEIE----EKLKEKNE----FRNQALALERVETER 1126
Cdd:pfam12128 288 LNQLLRTLDDQWKEkrdelNGELSAADAA-VAKDRSELEALEDQHGAFLdadiETAAADQEqlpsWQSELENLEERLKAL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1127 LELAQKLHENYEKMESITKERNDL------KELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELR 1200
Cdd:pfam12128 367 TGKHQDVTAKYNRRRSKIKEQNNRdiagikDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1201 GSISEKEAQASSTQDTgKTNPASQgetpvpreQELLPDAEEARASAEKGSElepveehsrtahSLTTEgiemeiLALTKK 1280
Cdd:pfam12128 447 GELKLRLNQATATPEL-LLQLENF--------DERIERAREEQEAANAEVE------------RLQSE------LRQARK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1281 LEESQKEiscltKERSDLRRTQEaLQVECAQLK---DDARRTLANHLETEEEL---SLARCCLKEQENKID---SLIVSL 1351
Cdd:pfam12128 500 RRDQASE-----ALRQASRRLEE-RQSALDELElqlFPQAGTLLHFLRKEAPDweqSIGKVISPELLHRTDldpEVWDGS 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1352 SQKEAELSSVRV---------------QLEVTTGELERKVQELCEKQEQLNiKETSEVQGKMSELDhiRALLLTKdSALQ 1416
Cdd:pfam12128 574 VGGELNLYGVKLdlkridvpewaaseeELRERLDKAEEALQSAREKQAAAE-EQLVQANGELEKAS--REETFAR-TALK 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1417 SVESDRLRLNKQLEESQEEIKILIKEREelRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKslNETQGNKCE 1496
Cdd:pfam12128 650 NARLDLRRLFDEKQSEKDKKNKALAERK--DSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEK--QAYWQVVEG 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1497 DLNQQLEAQKSSLEKVEmqnVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEetitknqELQEKGHQLS 1576
Cdd:pfam12128 726 ALDAQLALLKAAIAARR---SGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIE-------RIAVRRQEVL 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1577 QVKADLRETMDQMEQ-LKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKI-MDEALREERDQLReslrq 1654
Cdd:pfam12128 796 RYFDWYQETWLQRRPrLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVrLSENLRGLRCEMS----- 870
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 1655 teasdlekqeklRIAhlDLKEHQeTIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELK 1716
Cdd:pfam12128 871 ------------KLA--TLKEDA-NSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFK 917
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
497-972 |
3.83e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYNQDL 576
Cdd:pfam15921 345 EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDR 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 577 ENELSSKVELLK----EKEDQIKELQRYIDAQKSETTK-TDLSYSSEATED---------------LKQAMRTLSDLDTV 636
Cdd:pfam15921 425 NMEVQRLEALLKamksECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEmlrkvveeltakkmtLESSERTVSDLTAS 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 637 ALDAKRESAFLRSENLELKERIN---ELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKG-- 711
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDlklQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGrt 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 712 ----LLSNLELEKRITDLQKELNkevEEKETLQKEVHLLSELKSLPSEVETLRREL----HEKSEELCVITTEREKLFSE 783
Cdd:pfam15921 585 agamQVEKAQLEKEINDRRLELQ---EFKILKDKKDAKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQERDQLLNE 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 784 MAHKDSRIQGLLEEIGNTKDDLaasqlsQRSSDEECQALKSLHVELKHRQEEVleESERVKQELSQKTQELAQKTAEGQE 863
Cdd:pfam15921 662 VKTSRNELNSLSEDYEVLKRNF------RNKSEEMETTTNKLKMQLKSAQSEL--EQTRNTLKSMEGSDGHAMKVAMGMQ 733
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 864 ML-----NQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIqdtVNMN 938
Cdd:pfam15921 734 KQitakrGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV---ANME 810
|
490 500 510
....*....|....*....|....*....|....*...
gi 1958755386 939 IDTQEQLLNALES----LKQHQETINmLKMKATEEMSD 972
Cdd:pfam15921 811 VALDKASLQFAECqdiiQRQEQESVR-LKLQHTLDVKE 847
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
495-1175 |
4.07e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.83 E-value: 4.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 495 SEENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQR--------EEKDQELQLMHEVSNLKNLI 566
Cdd:TIGR00618 220 RKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEElraqeavlEETQERINRARKAAPLAAHI 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 567 KHAEEYNQDLENELSskvELLKEKEDQIKELQRYIDAQKSETtktdlsysseateDLKQAMRTLSDLdtvaldaKRESAF 646
Cdd:TIGR00618 300 KAVTQIEQQAQRIHT---ELQSKMRSRAKLLMKRAAHVKQQS-------------SIEEQRRLLQTL-------HSQEIH 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 647 LRSENlELKERINELSDSCKQMENGIQMYQRQLEAkkqvqadLEKELQLAFQEISKLSALVDGKGLLSNLELEKRITDLQ 726
Cdd:TIGR00618 357 IRDAH-EVATSIREISCQQHTLTQHIHTLQQQKTT-------LTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 727 KELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEElcvitTEREKLFSEMAHKDSRIQGLLEeigntkddla 806
Cdd:TIGR00618 429 AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER-----EQQLQTKEQIHLQETRKKAVVL---------- 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 807 asQLSQRSSDEECQALKSLHVELKHRQEEVLEES-----ERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSS 881
Cdd:TIGR00618 494 --ARLLELQEEPCPLCGSCIHPNPARQDIDNPGPltrrmQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQS 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 882 LQSAEKEKNLLTE---KLQQTLEEVRALTQEKNDLK-QLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQE 957
Cdd:TIGR00618 572 FSILTQCDNRSKEdipNLQNITVRLQDLTEKLSEAEdMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAL 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 958 TINMLKMKATEEMSDHLPIKGREGSSDEVEQK------------LDGIDEENLLAESAHTVVGSGEDHGETEEQR---KI 1022
Cdd:TIGR00618 652 QLTLTQERVREHALSIRVLPKELLASRQLALQkmqsekeqltywKEMLAQCQTLLRELETHIEEYDREFNEIENAsssLG 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1023 DSLLQENSRLQQTLESIiaeKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEI 1102
Cdd:TIGR00618 732 SDLAAREDALNQSLKEL---MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEI 808
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 1103 EEKLKEKNEFRNqaLALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAG 1175
Cdd:TIGR00618 809 GQEIPSDEDILN--LQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLN 879
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
637-1272 |
4.39e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.83 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 637 ALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLA-FQEISKLSALVDGKGLLSN 715
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAApLAAHIKAVTQIEQQAQRIH 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 716 LELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKS---EELCVITTEREKLFSEMAHKDSRIQ 792
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsirEISCQQHTLTQHIHTLQQQKTTLTQ 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 793 gLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELR 872
Cdd:TIGR00618 394 -KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 873 EKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQ-LQESLQTERDQLRsdIQDTVNMNIDTQEQLLNALES 951
Cdd:TIGR00618 473 QQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPaRQDIDNPGPLTRR--MQRGEQTYAQLETSEEDVYHQ 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 952 LKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEE---NLLAESAHTVVGSGEDHGETEE-------QRK 1021
Cdd:TIGR00618 551 LTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRlqdLTEKLSEAEDMLACEQHALLRKlqpeqdlQDV 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1022 IDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEiaAQEKDHVTEKSEELSRAHERLAE 1101
Cdd:TIGR00618 631 RLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKM--QSEKEQLTYWKEMLAQCQTLLRE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1102 IEEKLKEKNEFRNQalalerVETERLELAQKLHENYEKMESITKErndLKELQESFEIEKKQLKEYAREMESAGLQTKEQ 1181
Cdd:TIGR00618 709 LETHIEEYDREFNE------IENASSSLGSDLAAREDALNQSLKE---LMHQARTVLKARTEAHFNNNEEVTAALQTGAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1182 LNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARAS-AEKGSELEPVEEHSR 1260
Cdd:TIGR00618 780 LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATlGEITHQLLKYEECSK 859
|
650
....*....|..
gi 1958755386 1261 TAHSLTTEGIEM 1272
Cdd:TIGR00618 860 QLAQLTQEQAKI 871
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
494-1778 |
4.41e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 59.29 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 494 LSEENLESelTSLNTQYNNLVLDYEQLRREN---EDLKLKLKEKneleefefleqreekdqelqlMHEVSNLKNLIKHAE 570
Cdd:TIGR01612 567 LEEENEDS--IHLEKEIKDLFDKYLEIDDEIiyiNKLKLELKEK---------------------IKNISDKNEYIKKAI 623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 571 EYNQDLENELSSKVELLKEKEDQIKELQRYIDAQKSeTTKTDLSYSSEatEDLKQAMRTLS------DLDTVALDAKREs 644
Cdd:TIGR01612 624 DLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYS-TIKSELSKIYE--DDIDALYNELSsivkenAIDNTEDKAKLD- 699
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 645 aflrsenlELKERINELSDSCKQMENG-IQMYQRQLEAKKQVQADLEKELQ-LAFQEISK-LSALVDgkgllsnlELEKR 721
Cdd:TIGR01612 700 --------DLKSKIDKEYDKIQNMETAtVELHLSNIENKKNELLDIIVEIKkHIHGEINKdLNKILE--------DFKNK 763
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 722 ITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEmahKDSRIQGLLEEIGNT 801
Cdd:TIGR01612 764 EKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISI---KEDEIFKIINEMKFM 840
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 802 KDDLAA--------SQLSQRSSDEECQALKSLHVELKHR-QEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELR 872
Cdd:TIGR01612 841 KDDFLNkvdkfinfENNCKEKIDSEHEQFAELTNKIKAEiSDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKVD 920
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 873 EKLERRDSSLQSAEK---EKNLLTEKLQQTLEEVR---------------ALTQEKNDLKQL--------QESLQTERDQ 926
Cdd:TIGR01612 921 EYIKICENTKESIEKfhnKQNILKEILNKNIDTIKesnlieksykdkfdnTLIDKINELDKAfkdaslndYEAKNNELIK 1000
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 927 LRSDIQDTVNMN--------IDTQEQLLNALEslkqhQETINMLKMKATEEMSDHLPIKGregSSDEVEqKLDGIDEENL 998
Cdd:TIGR01612 1001 YFNDLKANLGKNkenmlyhqFDEKEKATNDIE-----QKIEDANKNIPNIEIAIHTSIYN---IIDEIE-KEIGKNIELL 1071
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 999 LAESAHTVVGSGEDHGETEEQRKI----DSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQ 1074
Cdd:TIGR01612 1072 NKEILEEAEINITNFNEIKEKLKHynfdDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQ 1151
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1075 -----------------QEIAAQEKDHVTEKS------EELSRAHERLAEIEEKLKEKNEFRNQALA----LERVETERL 1127
Cdd:TIGR01612 1152 indledvadkaisnddpEEIEKKIENIVTKIDkkkniyDEIKKLLNEIAEIEKDKTSLEEVKGINLSygknLGKLFLEKI 1231
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1128 ELAQKLHENYEK-MESITKERNDLKELQESFEIEKKQLKEYAREMESaglqtkeqLNIAHANLKEYQEIIKELRGSISE- 1205
Cdd:TIGR01612 1232 DEEKKKSEHMIKaMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMET--------FNISHDDDKDHHIISKKHDENISDi 1303
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1206 KEAQASSTQDTGKTNPASQGETPVpreQELLPDAEeaRASAEKGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQ 1285
Cdd:TIGR01612 1304 REKSLKIIEDFSEESDINDIKKEL---QKNLLDAQ--KHNSDINLYLNEIANIYNILKLNKIKKIIDEVKEYTKEIEENN 1378
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1286 KEI-SCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLI---------VSLSQKE 1355
Cdd:TIGR01612 1379 KNIkDELDKSEKLIKKIKDDINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFknadennenVLLLFKN 1458
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1356 AELSS------VRVQLEVTTGELERKVQELCEKQEQLN-IKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQ 1428
Cdd:TIGR01612 1459 IEMADnksqhiLKIKKDNATNDHDFNINELKEHIDKSKgCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNK 1538
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1429 LEESQEEIKILIKEREELRRAqeaLHVEREQQQESIKEISTRLQELQDKeyeylvmkSLNETQGNKCE-DLNQQLEAQKS 1507
Cdd:TIGR01612 1539 FAKTKKDSEIIIKEIKDAHKK---FILEAEKSEQKIKEIKKEKFRIEDD--------AAKNDKSNKAAiDIQLSLENFEN 1607
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1508 SLEKVEmqnvNLTQRLNETLEEMKSVAKERDELrsveerltadrdqlkkSLEETITKNQELQEKGHQLSQVKADLRETMD 1587
Cdd:TIGR01612 1608 KFLKIS----DIKKKINDCLKETESIEKKISSF----------------SIDSQDTELKENGDNLNSLQEFLESLKDQKK 1667
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1588 QMEQLKEQLEAQNSTLESIEIEklklTQQLNENLkEMTLVAKENDDLKimdeALREERDQLRESLrqteasdlekqeklr 1667
Cdd:TIGR01612 1668 NIEDKKKELDELDSEIEKIEID----VDQHKKNY-EIGIIEKIKEIAI----ANKEEIESIKELI--------------- 1723
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1668 iahldlkehQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQElkaselqLLKSKVEAGETKKQLKEQGLALSKIE 1747
Cdd:TIGR01612 1724 ---------EPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDIYEE-------FIELYNIIAGCLETVSKEPITYDEIK 1787
|
1370 1380 1390
....*....|....*....|....*....|.
gi 1958755386 1748 MENLNLAQQIHQNLEEMKSISKERDDLKRME 1778
Cdd:TIGR01612 1788 NTRINAQNEFLKIIEIEKKSKSYLDDIEAKE 1818
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1017-1808 |
4.81e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 58.65 E-value: 4.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1017 EEQRKIDSLLQENSRLQQTLesiIAEKEQLKMDLKENIEMSVEnQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRA- 1095
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQL---CEEKNALQEQLQAETELCAE-AEEMRARLAARKQELEEILHELESRLEEEEERSQQl 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1096 -------HERLAEIEEKLKEKNEFRnQALALERVETErlelaqklhenyEKMESITKERNDLKELQESFEIEKKQLKEYA 1168
Cdd:pfam01576 95 qnekkkmQQHIQDLEEQLDEEEAAR-QKLQLEKVTTE------------AKIKKLEEDILLLEDQNSKLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1169 REMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEaqaSSTQDTGKTNPASQGETPVPREQ--ELLPDAEEARAS- 1245
Cdd:pfam01576 162 SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEE---KGRQELEKAKRKLEGESTDLQEQiaELQAQIAELRAQl 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1246 AEKGSELEPV------EEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRT 1319
Cdd:pfam01576 239 AKKEEELQAAlarleeETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1320 LANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAE-LSSVRVQLEVTtgeleRKVQELCEKQEQLNIKETSEVQGKM 1398
Cdd:pfam01576 319 QELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQaLEELTEQLEQA-----KRNKANLEKAKQALESENAELQAEL 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1399 SELDHIRALLLTK----DSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQEL 1474
Cdd:pfam01576 394 RTLQQAKQDSEHKrkklEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1475 QDKEYEYLVMKSLNETQGNKCED----LNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTAD 1550
Cdd:pfam01576 474 QELLQEETRQKLNLSTRLRQLEDernsLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1551 RDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKE 1630
Cdd:pfam01576 554 LEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEARE 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1631 NDDLKI-MDEALREERDQLRESLRQTEASDLEKQEKL-------RIAHlDLKEHQETIERLMGSVAKRTEEVSDMNMELE 1702
Cdd:pfam01576 634 KETRALsLARALEEALEAKEELERTNKQLRAEMEDLVsskddvgKNVH-ELERSKRALEQQVEEMKTQLEELEDELQATE 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1703 RANTRLQEKVQELKASELQLLKSKVEAGETKKQL----------------KEQGLALS---KIEMENLNLAQQIH----- 1758
Cdd:pfam01576 713 DAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQlvkqvreleaelederKQRAQAVAakkKLELDLKELEAQIDaankg 792
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 1759 --QNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQ 1808
Cdd:pfam01576 793 reEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQ 844
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
717-936 |
5.80e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 5.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 717 ELEKRITDLQKELNKEVEEKETLQKEVH-LLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLL 795
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKaLLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 796 EEIGNTkddLAASQLSQR--------SSDEECQALKSLHVelkhrQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQ 867
Cdd:COG4942 104 EELAEL---LRALYRLGRqpplalllSPEDFLDAVRRLQY-----LKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755386 868 MEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRaltQEKNDLKQLQESLQTERDQLRSDIQDTVN 936
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELA---AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
625-1212 |
6.45e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 6.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 625 QAMRTLSDLDtvaldakresAFLRSENLE---LKERINELSDsckQMENGIQMYQRQLEAKKQVQA-----DLEKELQLA 696
Cdd:COG4913 201 QSFKPIGDLD----------DFVREYMLEepdTFEAADALVE---HFDDLERAHEALEDAREQIELlepirELAERYAAA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 697 FQEISKLSALVDG----KGLLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSElkslpsEVETLRRELhekseelcv 772
Cdd:COG4913 268 RERLAELEYLRAAlrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALRE------ELDELEAQI--------- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 773 ittereklfseMAHKDSRIQGLLEEIGNTKDDLAasQLSQRSSDEEcQALKSLHVELKHRQEEVLEESERVKQELSQKTQ 852
Cdd:COG4913 333 -----------RGNGGDRLEQLEREIERLERELE--ERERRRARLE-ALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 853 ELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEV-RALTQEKNDLKQLQESLQTERDQlrSDI 931
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALaEALGLDEAELPFVGELIEVRPEE--ERW 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 932 QDTVnmnidtqEQLLNAL--------ESLKQHQETINMLKMKA---TEEMSDHLP-IKGREGSSDEVEQKLDgIDE---- 995
Cdd:COG4913 477 RGAI-------ERVLGGFaltllvppEHYAAALRWVNRLHLRGrlvYERVRTGLPdPERPRLDPDSLAGKLD-FKPhpfr 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 996 ---ENLLAES-AHTVVGSGED---------------HGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEM 1056
Cdd:COG4913 549 awlEAELGRRfDYVCVDSPEElrrhpraitragqvkGNGTRHEKDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAE 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1057 SVENQEELRILRDELKRQQEIAAQEKDHvTEKSEELSRAHERLAEIEEKLKE----KNEFRNQALALERVETERLELAQK 1132
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAEY-SWDEIDVASAEREIAELEAELERldasSDDLAALEEQLEELEAELEELEEE 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1133 LHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASS 1212
Cdd:COG4913 708 LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEE 787
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
574-929 |
6.87e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 6.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 574 QDLENELSSKVELLKEKEDQIKELQRYIDAQKSE--TTKTDLSYSSEATEDLKQAMRTLS----DLDTVALDAKRESAFL 647
Cdd:PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAAELESEleEAREAVEDRREEIEELEEEIEELRerfgDAPVDLGNAEDFLEEL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 648 RSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADlekelqlafQEIsKLSALVDGKGllsnlELEKRITDLQK 727
Cdd:PRK02224 418 REERDELREREAELEATLRTARERVEEAEALLEAGKCPECG---------QPV-EGSPHVETIE-----EDRERVEELEA 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 728 ELNKEVEEKETLQKEVHLLSELKSLPSEVETL--------------RRELHEKSEELCVITTEREKLFSEMAHKDSRIQG 793
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERLeerredleeliaerRETIEEKRERAEELRERAAELEAEAEEKREAAAE 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 794 LLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELkhrqeEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELRE 873
Cdd:PRK02224 563 AEEEAEEAREEVAELNSKLAELKERIESLERIRTLL-----AAIADAEDEIERLREKREALAELNDERRERLAEKRERKR 637
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 874 KLERR--DSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRS 929
Cdd:PRK02224 638 ELEAEfdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1238-1721 |
8.37e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 8.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1238 DAEEARASAEKgseLEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDAR 1317
Cdd:COG4913 243 ALEDAREQIEL---LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1318 RTLANHLETEEELslarccLKEQENKIDSLivslsqkEAELSSVRVQLEvttgELERKVQELCEKQEQLNIKETSEVQGK 1397
Cdd:COG4913 320 ALREELDELEAQI------RGNGGDRLEQL-------EREIERLERELE----ERERRRARLEALLAALGLPLPASAEEF 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1398 MSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKE----------- 1466
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEalgldeaelpf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1467 ------------------------ISTRLqeLQDKEYEYLVMKSLNET------QGNKCEDLNQQLEAQKSS----LEKV 1512
Cdd:COG4913 463 vgelievrpeeerwrgaiervlggFALTL--LVPPEHYAAALRWVNRLhlrgrlVYERVRTGLPDPERPRLDpdslAGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1513 EMQNVNLTQRLNETLEEMKSVAK--ERDELRSVEERLTA--------------DRDQLKKSL---EETITKNQELQEKGH 1573
Cdd:COG4913 541 DFKPHPFRAWLEAELGRRFDYVCvdSPEELRRHPRAITRagqvkgngtrhekdDRRRIRSRYvlgFDNRAKLAALEAELA 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1574 QLSQVKADLRETMDQMEQLKEQLEAQNSTLESI------EIEKLKLTQQLNENLKEMTLVAKENDDLkimdEALREERDQ 1647
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAELERLDASSDDL----AALEEQLEE 696
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1648 LRESLRQTEasdlEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERAntRLQEKVQELKASELQ 1721
Cdd:COG4913 697 LEAELEELE----EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFAAALGDAVE 764
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1238-1912 |
8.62e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.06 E-value: 8.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1238 DAEEARASAEKgsELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDdAR 1317
Cdd:TIGR00618 197 ELLTLRSQLLT--LCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE-LR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1318 RTLANHLETEEELSLARcclkeQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCE--KQEQLNIKETSEVQ 1395
Cdd:TIGR00618 274 AQEAVLEETQERINRAR-----KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAhvKQQSSIEEQRRLLQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1396 GKMSELDHIR-----ALLLTKDSALQSVESDRLR-LNKQLEESQEEIKILIKEREELRRAQ---EALHVEREQQQESIKE 1466
Cdd:TIGR00618 349 TLHSQEIHIRdahevATSIREISCQQHTLTQHIHtLQQQKTTLTQKLQSLCKELDILQREQatiDTRTSAFRDLQGQLAH 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1467 ISTRlQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNV-NLTQRLNETLEEMKSVAKERDEL-RSVE 1544
Cdd:TIGR00618 429 AKKQ-QELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKeQIHLQETRKKAVVLARLLELQEEpCPLC 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1545 ERLT--ADRDQLKKSLEETITKNQELQEKGHQLSQVKADLREtmdQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLK 1622
Cdd:TIGR00618 508 GSCIhpNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYH---QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1623 EMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELE 1702
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1703 RANTRLQEKVQELKASELQLLKSKVEA----------------------GETKKQLKEQGLAL----SKIEMENLNLAQQ 1756
Cdd:TIGR00618 665 LSIRVLPKELLASRQLALQKMQSEKEQltywkemlaqcqtllrelethiEEYDREFNEIENASsslgSDLAAREDALNQS 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1757 IHQNLEEMKSISKER--DDLKRMEE--ILRMEKDQLKDSLREAKFKAHQnYEETVQYGKGLLCGGEQHCTGRLREKCLRI 1832
Cdd:TIGR00618 745 LKELMHQARTVLKARteAHFNNNEEvtAALQTGAELSHLAAEIQFFNRL-REEDTHLLKTLEAEIGQEIPSDEDILNLQC 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1833 EKLLKRYSEMANDYECLNRFSLDLEKETKTQKELSVTIKTKLSLPYTQTKEIEKLLTANQRCSMEFHRILKKLKYVLSYI 1912
Cdd:TIGR00618 824 ETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLY 903
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1371-1791 |
8.81e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.47 E-value: 8.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1371 ELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRAllltKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQ 1450
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEE----KEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1451 EA--LHVEREQQQESIKEISTRLQELQDKEYEYlvmkslnETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLT-QRLNETL 1527
Cdd:COG4717 126 QLlpLYQELEALEAELAELPERLEELEERLEEL-------RELEEELEELEAELAELQEELEELLEQLSLATeEELQDLA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1528 EEMKSVAKERDELRSVEERLTADRDQLKKSLEEtITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIE 1607
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQ-LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1608 IekLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHL-DLKEHQETIERLMGS 1686
Cdd:COG4717 278 V--LFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELlELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1687 VAKRTEEvsdmnMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQgLALSKIEMENLN-------------- 1752
Cdd:COG4717 356 AEELEEE-----LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEE-LEELEEQLEELLgeleellealdeee 429
|
410 420 430
....*....|....*....|....*....|....*....
gi 1958755386 1753 LAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDS 1791
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
516-1168 |
9.01e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 9.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 516 DYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYNQDLENELSSKVELLKEKEDQIK 595
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 596 ELQRYIdaqksettktdlsysseatEDLKQAMRTLSDLDTVALDAKRESAFLRsenlELKERINELSDSCKQMENGIQMY 675
Cdd:PRK03918 270 ELKKEI-------------------EELEEKVKELKELKEKAEEYIKLSEFYE----EYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 676 QRQLEAKKQVQADLEkelqlafqeisklsalvdgkgllsnlELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSL--- 752
Cdd:PRK03918 327 EERIKELEEKEERLE--------------------------ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLkkr 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 753 --PSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQAlkslhvELK 830
Cdd:PRK03918 381 ltGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK------ELL 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 831 HRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEK 910
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 911 NDLKQLQESLQTErdqlrsdiqdtvnmnidtqeqlLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEveqkl 990
Cdd:PRK03918 535 IKLKGEIKSLKKE----------------------LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV----- 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 991 dgideenllaesahtvvgsGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDE 1070
Cdd:PRK03918 588 -------------------EELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1071 LKRQQEIAAQEK-DHVTEKSEELSRAHERLaeiEEKLKEKNEFRNQALALERVETERLElaqKLHENYEKMESITKERND 1149
Cdd:PRK03918 649 LEELEKKYSEEEyEELREEYLELSRELAGL---RAELEELEKRREEIKKTLEKLKEELE---EREKAKKELEKLEKALER 722
|
650
....*....|....*....
gi 1958755386 1150 LKELQESFEIEKKQLKEYA 1168
Cdd:PRK03918 723 VEELREKVKKYKALLKERA 741
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1292-1536 |
1.20e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1292 TKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEElslarccLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGE 1371
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ-------LAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1372 LERKVQELCEKQEQLniKETSEVQGKMSELDHIrALLLTKDSALQSVESDRLrLNKQLEESQEEIKILIKEREELRRAQE 1451
Cdd:COG4942 92 IAELRAELEAQKEEL--AELLRALYRLGRQPPL-ALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1452 ALHVEREQQQESIKEISTRLQELQdkeyeylvmkSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMK 1531
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALE----------ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
....*
gi 1958755386 1532 SVAKE 1536
Cdd:COG4942 238 AAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
497-965 |
1.36e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.95 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 497 ENLESELTSLNTQYNNLvldyeqlRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHaeeyNQDL 576
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDL-------KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQK----NKSL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 577 ENELSSKVELLKEKEDQIKELQRYIDAQKSETTKTD---LSYSSEATEDLKQamrtlsdLDTVALDAKRESAFLRSENLE 653
Cdd:TIGR04523 217 ESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQtqlNQLKDEQNKIKKQ-------LSEKQKELEQNNKKIKELEKQ 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 654 LKERINELSDSCKQMENGI-QMYQRQLEAKKQVQADLEKELQLAFQEISKL-SALVDGKGLLSNLELEKriTDLQKELNK 731
Cdd:TIGR04523 290 LNQLKSEISDLNNQKEQDWnKELKSELKNQEKKLEEIQNQISQNNKIISQLnEQISQLKKELTNSESEN--SEKQRELEE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 732 EVEEKETLQKEVH-LLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQL 810
Cdd:TIGR04523 368 KQNEIEKLKKENQsYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 811 SQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREK---LERRDSSLQSAEK 887
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKvkdLTKKISSLKEKIE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 888 E---------------------------KNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVN---M 937
Cdd:TIGR04523 528 KlesekkekeskisdledelnkddfelkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKeieE 607
|
490 500
....*....|....*....|....*...
gi 1958755386 938 NIDTQEQLLNALESLKQHQETINMLKMK 965
Cdd:TIGR04523 608 KEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1521-1813 |
1.41e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1521 QRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEetitKNQELQEKGHQLSqvKADLRETMDQMEQLKEQLEAQN 1600
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE----LKAELRELELALL--VLRLEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1601 STLESIEIEKLKLTQQLNENLKEMTLVAKEND--------------DLKIMDEALREERDQLRESLRQTEASDLEKQEKL 1666
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEelqkelyalaneisRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1667 RIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQEL--KASELQLLKSKVEAgeTKKQLKEQGLALS 1744
Cdd:TIGR02168 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLetLRSKVAQLELQIAS--LNNEIERLEARLE 410
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1745 KIEMENLNLAQQIHQNLE-----EMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQYGKGL 1813
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKkleeaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1502-1817 |
1.45e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1502 LEAQKSSLEKVEMQ-----NVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLS 1576
Cdd:PRK02224 182 LSDQRGSLDQLKAQieekeEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1577 QVKADLRETMDQMEQLKEQLEAQNSTLESIEIEklkltqqLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQte 1656
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEE-------RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE-- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1657 asdlekqeklriAHLDLKEHQETIERLMGSVAkrteevsdmnmELERANTRLQEKVQELKAselqllkskvEAGETKKQL 1736
Cdd:PRK02224 333 ------------CRVAAQAHNEEAESLREDAD-----------DLEERAEELREEAAELES----------ELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1737 KEQGLALSKIEmenlnlaQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAhQNYEETVQYGKGLLCG 1816
Cdd:PRK02224 380 EDRREEIEELE-------EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL-RTARERVEEAEALLEA 451
|
.
gi 1958755386 1817 G 1817
Cdd:PRK02224 452 G 452
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
580-1173 |
1.53e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 57.01 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 580 LSSKVELLKEKEDQIKELQRYIDAQK--SETTKTDLSYSSEA-------TEDLKQAMRTLSDlDTVALDAKRESAFLRSE 650
Cdd:COG5022 805 LLGSRKEYRSYLACIIKLQKTIKREKklRETEEVEFSLKAEVliqkfgrSLKAKKRFSLLKK-ETIYLQSAQRVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 651 NLELKE---RINELSDSCKQMENGIqmyqrqLEAKKQVQADLEKELQLAFQEISKLSALVDGK----GLLSNLELEKRIT 723
Cdd:COG5022 884 LQELKIdvkSISSLKLVNLELESEI------IELKKSLSSDLIENLEFKTELIARLKKLLNNIdleeGPSIEYVKLPELN 957
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 724 DLQ---KELNKEVEEKE-TLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVItTEREKLFSEMAHKDSRIQGL---LE 796
Cdd:COG5022 958 KLHeveSKLKETSEEYEdLLKKSTILVREGNKANSELKNFKKELAELSKQYGAL-QESTKQLKELPVEVAELQSAskiIS 1036
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 797 EIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLE 876
Cdd:COG5022 1037 SESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ 1116
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 877 RRDSSLQSA--EKEKNLLTEKLQQTLEevraltQEKNDLKQLQESLQTERDQ--LRSDIQDTVNMNIDTQEQLLNALESL 952
Cdd:COG5022 1117 FIVAQMIKLnlLQEISKFLSQLVNTLE------PVFQKLSVLQLELDGLFWEanLEALPSPPPFAALSEKRLYQSALYDE 1190
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 953 KQH--QETINMLKMKATEEMSDHlpikgREGSSDEVEQKlDGIDEENLLAE--SAHTVVGSGEDHGETEEQRKIDSLLQE 1028
Cdd:COG5022 1191 KSKlsSSEVNDLKNELIALFSKI-----FSGWPRGDKLK-KLISEGWVPTEysTSLKGFNNLNKKFDTPASMSNEKLLSL 1264
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1029 NSRLQQTLESIIAEKEQLKMDLK-ENIEMSVENQEELRILRDELKRQQeiAAQEKDHVTEKSE-----ELSRAHERLAEI 1102
Cdd:COG5022 1265 LNSIDNLLSSYKLEEEVLPATINsLLQYINVGLFNALRTKASSLRWKS--ATEVNYNSEELDDwcrefEISDVDEELEEL 1342
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1103 EE-------------KLKEKNEFRNQALALERVE-TERLELAQKLHeNYEKMESITKERNDLKELQESFEIEKKQLKEYA 1168
Cdd:COG5022 1343 IQavkvlqllkddlnKLDELLDACYSLNPAEIQNlKSRYDPADKEN-NLPKEILKKIEALLIKQELQLSLEGKDETEVHL 1421
|
....*
gi 1958755386 1169 REMES 1173
Cdd:COG5022 1422 SEIFS 1426
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1393-1781 |
2.06e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.45 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1393 EVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQ----EALHVEREQQQESIKEIS 1468
Cdd:PRK01156 343 KKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQeidpDAIKKELNEINVKLQDIS 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1469 TRLQELQDK-----EYEYLVMKSLNETQG-NKCEDLNQQLEAQKSS--LEKVEMQNVNLTQRLNETLEEMKSVAKERDEL 1540
Cdd:PRK01156 423 SKVSSLNQRiralrENLDELSRNMEMLNGqSVCPVCGTTLGEEKSNhiINHYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1541 RSVEERLTadrdqlKKSLEETITKNQELQEKGHQLSQVK---ADLRETMDQMEQLKEQ--------LEAQN-------ST 1602
Cdd:PRK01156 503 KKRKEYLE------SEEINKSINEYNKIESARADLEDIKikiNELKDKHDKYEEIKNRykslkledLDSKRtswlnalAV 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1603 LESIEIEKLK-----LTQQLNENLKEMTLVAKENDDLKIMDEALREERDQlreslrqtEASDLEKQEKLRiahLDLKEHQ 1677
Cdd:PRK01156 577 ISLIDIETNRsrsneIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIEN--------EANNLNNKYNEI---QENKILI 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1678 ETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMEnlnlAQQI 1757
Cdd:PRK01156 646 EKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDR----INDI 721
|
410 420
....*....|....*....|....
gi 1958755386 1758 HQNLEEMKSISKERDDLKRMEEIL 1781
Cdd:PRK01156 722 NETLESMKKIKKAIGDLKRLREAF 745
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
499-1076 |
2.10e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 499 LESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEkneleefefleqREEKDQELQ-LMHEVSNLKNLIKHAEEYNQDLE 577
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEE------------HEERREELEtLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 578 NELSSKVELLKEKEDQIKELQRyiDAQKSETTKTDLSYSSEATEDLKQAMR-TLSDLDTVALDAKRESAFLRSENLELKE 656
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLA--EAGLDDADAEAVEARREELEDRDEELRdRLEECRVAAQAHNEEAESLREDADDLEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 657 RINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQlafqeisklsalvdgkgllsnlELEKRITDLQKELNKEVEEK 736
Cdd:PRK02224 357 RAEELREEAAELESELEEAREAVEDRREEIEELEEEIE----------------------ELRERFGDAPVDLGNAEDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 737 ETLQKEvhlLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSD 816
Cdd:PRK02224 415 EELREE---RDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 817 EEcqalkslhVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLN----QMEELREKLERRDSSLQSAEKEKNLL 892
Cdd:PRK02224 492 EE--------VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEekreRAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 893 TEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLrsdiqdtvnmniDTQEQLLNALESLKQHQETINMLKMKATEEMSD 972
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERIESLERIRTLL------------AAIADAEDEIERLREKREALAELNDERRERLAE 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 973 hlpikgREGSSDEVEQKLDgideenllaesahtvvgsgEDHGETEEQRKidsllQENSRLQQTLESIIAEKEQLKMDLKE 1052
Cdd:PRK02224 632 ------KRERKRELEAEFD-------------------EARIEEAREDK-----ERAEEYLEQVEEKLDELREERDDLQA 681
|
570 580
....*....|....*....|....
gi 1958755386 1053 NIEMSVENQEELRILRDELKRQQE 1076
Cdd:PRK02224 682 EIGAVENELEELEELRERREALEN 705
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
562-1219 |
2.11e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 562 LKNLIKHAEEYNQDLENELSSKVELLKEKEDQIKELQRYIDAQKsettkTDLSYSSEATEDLKQAMRTLSDLDTVALDAK 641
Cdd:TIGR04523 24 YKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDE-----EKINNSNNKIKILEQQIKDLNDKLKKNKDKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 642 REsafLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSAlvdgkgllSNLELEKR 721
Cdd:TIGR04523 99 NK---LNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNN--------KYNDLKKQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 722 ITDLQKELNKEVEEKETLQKEV-----------HLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSR 790
Cdd:TIGR04523 168 KEELENELNLLEKEKLNIQKNIdkiknkllkleLLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 791 IQGLLEEIGNTKDDL--AASQLSQRSSD------------EECQALKSLHVELKHRQEEVLeeSERVKQELSQKTQELAQ 856
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQnkIKKQLSEKQKEleqnnkkikeleKQLNQLKSEISDLNNQKEQDW--NKELKSELKNQEKKLEE 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 857 KTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVN 936
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 937 MNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEEnllaesahtvvgsgedhget 1016
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRES-------------------- 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1017 eEQRKIDSLLQENSRLQQTLESI---IAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKdhvTEKSEELS 1093
Cdd:TIGR04523 466 -LETQLKVLSRSINKIKQNLEQKqkeLKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK---KEKESKIS 541
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1094 raherlaEIEEKLKEKNefrnQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMES 1173
Cdd:TIGR04523 542 -------DLEDELNKDD----FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEK 610
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 1958755386 1174 AGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKT 1219
Cdd:TIGR04523 611 KISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1539-1796 |
2.87e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 2.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1539 ELRSVEE---RLTADRDQLKKSLE------ETITKNQELQEKGHQLsqvkaDLRETMDQMEQLKEQLEAQNSTLESIEIE 1609
Cdd:COG1196 180 KLEATEEnleRLEDILGELERQLEplerqaEKAERYRELKEELKEL-----EAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1610 KLKLTQQLnenlkemtlvakenddlkimdEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAK 1689
Cdd:COG1196 255 LEELEAEL---------------------AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1690 RTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEE-MKSIS 1768
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEElLEALR 393
|
250 260
....*....|....*....|....*...
gi 1958755386 1769 KERDDLKRMEEILRMEKDQLKDSLREAK 1796
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEE 421
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
820-1209 |
2.88e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 2.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 820 QALKSLHVELKHRQEEVlEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNL-------- 891
Cdd:COG4717 71 KELKELEEELKEAEEKE-EEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELaelperle 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 892 -LTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEM 970
Cdd:COG4717 150 eLEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 971 SDHLpikgREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRK--IDSLLQENSRLQQTLESIIAEKEQLKM 1048
Cdd:COG4717 230 EQLE----NELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1049 DLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETERLE 1128
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1129 LAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMEsaglqTKEQLNIAHANLKEYQEIIKELRGSISEKEA 1208
Cdd:COG4717 386 ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE-----LEEELEELEEELEELEEELEELREELAELEA 460
|
.
gi 1958755386 1209 Q 1209
Cdd:COG4717 461 E 461
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
545-1202 |
4.14e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.61 E-value: 4.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 545 QREEKDQELQLMH-EVSNLKNLIKHAEEYNQDLENELSSKvelLKEKEDQIKELQRYIDAQKSeTTKTDLSYSSEATEDL 623
Cdd:pfam12128 252 TLESAELRLSHLHfGYKSDETLIASRQEERQETSAELNQL---LRTLDDQWKEKRDELNGELS-AADAAVAKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 624 KQAMRTLSDLD--TVALDAKRESAFlRSENLELKERINELSDSCKQMEngiQMYQRQLEAKKQ----VQADLEKELQLAF 697
Cdd:pfam12128 328 EDQHGAFLDADieTAAADQEQLPSW-QSELENLEERLKALTGKHQDVT---AKYNRRRSKIKEqnnrDIAGIKDKLAKIR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 698 QEISKLSALVDG--KGLLSNL--ELEKRITDL---QKELNKEVEEKETLQKEVHLLSELKslpSEVETLRRELHEKSEEL 770
Cdd:pfam12128 404 EARDRQLAVAEDdlQALESELreQLEAGKLEFneeEYRLKSRLGELKLRLNQATATPELL---LQLENFDERIERAREEQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 771 CVITTEREKLFSEMAHKDSRIQGLLEEIGntkdDLAASQLSQRSSDEECQAL------------------------KSLH 826
Cdd:pfam12128 481 EAANAEVERLQSELRQARKRRDQASEALR----QASRRLEERQSALDELELQlfpqagtllhflrkeapdweqsigKVIS 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 827 VELKHRQEEVLEESE-RVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKL--------Q 897
Cdd:pfam12128 557 PELLHRTDLDPEVWDgSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLvqangeleK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 898 QTLEEVRALTQEKN---DLKQL---QESLQTERDQLRSDIQDTVNMNIDTQEQLLNALE-SLKQHQETINMLKMKATEEM 970
Cdd:pfam12128 637 ASREETFARTALKNarlDLRRLfdeKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQKREARTEK 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 971 SDHLpiKGREGSSDEveqKLDGIDEENLLAESAHtvvgsgedhgeteeQRKIDSLLQENSRLQQTL---ESIIAEKEQLK 1047
Cdd:pfam12128 717 QAYW--QVVEGALDA---QLALLKAAIAARRSGA--------------KAELKALETWYKRDLASLgvdPDVIAKLKREI 777
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1048 MDLKENIEMSVENQEELRILRDelkRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETERL 1127
Cdd:pfam12128 778 RTLERKIERIAVRRQEVLRYFD---WYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQ 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1128 ELaqKLHENYEKMESITKERNDLKE------LQESFEIEKKQLKEYAREMESAGLQTKEQlniahanLKEYQEIIKELRG 1201
Cdd:pfam12128 855 QV--RLSENLRGLRCEMSKLATLKEdanseqAQGSIGERLAQLEDLKLKRDYLSESVKKY-------VEHFKNVIADHSG 925
|
.
gi 1958755386 1202 S 1202
Cdd:pfam12128 926 S 926
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1429-1688 |
4.16e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 4.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1429 LEESQ--EEIKILIKEREELRRAQEALHVEREQQQ--ESIKEISTRLQELQDK--EYEYLVMKSLNETQGNKCEDLNQQL 1502
Cdd:COG4913 218 LEEPDtfEAADALVEHFDDLERAHEALEDAREQIEllEPIRELAERYAAARERlaELEYLRAALRLWFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1503 EAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVE-ERLTADRDQLKKSLEETITKNQELQEK----GHQLSQ 1577
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALlaalGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1578 VKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEmtlVAKENDDLK----IMDEALREERDQLRESLR 1653
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE---LEAEIASLErrksNIPARLLALRDALAEALG 454
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1958755386 1654 QTEAsdlekqeKLRIA--HLDLKEHQET----IERLMGSVA 1688
Cdd:COG4913 455 LDEA-------ELPFVgeLIEVRPEEERwrgaIERVLGGFA 488
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1434-1663 |
4.79e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.73 E-value: 4.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1434 EEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQdkEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVE 1513
Cdd:COG3096 836 AELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLN--KLLPQANLLADETLADRLEELREELDAAQEAQAFIQ 913
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1514 MQNVNLTQrLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSL------------------EETITKNQELQEK-GHQ 1574
Cdd:COG3096 914 QHGKALAQ-LEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIfalsevvqrrphfsyedaVGLLGENSDLNEKlRAR 992
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1575 LSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDlkIMDEALREERDQLRESLRQ 1654
Cdd:COG3096 993 LEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADA--EAEERARIRRDELHEELSQ 1070
|
250
....*....|.
gi 1958755386 1655 TEA--SDLEKQ 1663
Cdd:COG3096 1071 NRSrrSQLEKQ 1081
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1030-1478 |
5.05e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.16 E-value: 5.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1030 SRLQQTLESIIAEK--EQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQ------EKDHVTEKSEELSRAHERLAE 1101
Cdd:COG4717 37 STLLAFIRAMLLERleKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEyaelqeELEELEEELEELEAELEELRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1102 IEEKLKEKNEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQ 1181
Cdd:COG4717 117 ELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1182 LNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEkgselepVEEHSRT 1261
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALL-------GLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1262 AHSLTTEGIEMEILALTKKLeesqkeISCLTKERSDLRRTQEALQVECAQ--LKDDARRTLANHLETEEELSLARccLKE 1339
Cdd:COG4717 270 SLILTIAGVLFLVLGLLALL------FLLLAREKASLGKEAEELQALPALeeLEEEELEELLAALGLPPDLSPEE--LLE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1340 QENKIDSLIVSLSQKEAELSSVRVQlevttgELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVE 1419
Cdd:COG4717 342 LLDRIEELQELLREAEELEEELQLE------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL 415
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755386 1420 SDRLRLNKQLEESQeeikiLIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKE 1478
Cdd:COG4717 416 GELEELLEALDEEE-----LEEELEELEEELEELEEELEELREELAELEAELEQLEEDG 469
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1518-1734 |
6.05e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 6.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1518 NLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEkghQLSQVKADLRETMDQMEQLKEQLE 1597
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ---ELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1598 AQNSTLEsieiEKLKLTQQLNENLKEMTLVAKEN--------DDLKIMDEALREERDQLR---ESLRQTEASDLEKQEKL 1666
Cdd:COG4942 101 AQKEELA----ELLRALYRLGRQPPLALLLSPEDfldavrrlQYLKYLAPARREQAEELRadlAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1667 RIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKK 1734
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
560-1108 |
6.92e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 6.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 560 SNLKNLIKHAEEYNQDLENELSSKVELLKEKEDQIKELQRyiDAQKSETTKTDLSYSSEATEDLKQAMRTLSDlDTVALD 639
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK--EVKELEELKEEIEELEKELESLEGSKRKLEE-KIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 640 AKRESAFLRSENLELK-ERINELSDSCKQMENGIQMYQRQLEAKKQVQ---ADLEKELQLAFQEISKLSALVDGKGllsn 715
Cdd:PRK03918 266 ERIEELKKEIEELEEKvKELKELKEKAEEYIKLSEFYEEYLDELREIEkrlSRLEEEINGIEERIKELEEKEERLE---- 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 716 lELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSL-----PSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSR 790
Cdd:PRK03918 342 -ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLkkrltGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 791 IQGLLEEIGNTKDDLAASQLSQRSSDEECQA--LKSLHVELKHRQEEVLEESERVKQELSQKTQ-----ELAQKTAEGQE 863
Cdd:PRK03918 421 IKELKKAIEELKKAKGKCPVCGRELTEEHRKelLEEYTAELKRIEKELKEIEEKERKLRKELRElekvlKKESELIKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 864 MLNQMEELREKLERRD-SSLQSAEKEKNLLTEKLQQTLEEVRALTQE-------KNDLKQLQESLQTERDQLRSDIQDTV 935
Cdd:PRK03918 501 LAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKElekleelKKKLAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 936 NMNIDTQEQLLNALESLKQHQETINMLKmKATEEMSDHLpiKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGE 1015
Cdd:PRK03918 581 ELGFESVEELEERLKELEPFYNEYLELK-DAEKELEREE--KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1016 TEEQRKIDSLLQENSRLQ-------QTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEK 1088
Cdd:PRK03918 658 EEEYEELREEYLELSRELaglraelEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALL 737
|
570 580
....*....|....*....|.
gi 1958755386 1089 SEELSRAHERLA-EIEEKLKE 1108
Cdd:PRK03918 738 KERALSKVGEIAsEIFEELTE 758
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1565-1779 |
7.66e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 7.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1565 NQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREE 1644
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1645 RDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLK 1724
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755386 1725 SKVEAGETKKQL----KEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEE 1779
Cdd:COG4942 179 LLAELEEERAALealkAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1580-1795 |
1.03e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1580 ADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASD 1659
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1660 LEKQEKL--RIAHLDLKEHQETIERLMGSvaKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLK 1737
Cdd:COG4942 100 EAQKEELaeLLRALYRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1738 EQglaLSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREA 1795
Cdd:COG4942 178 AL---LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1049-1765 |
1.37e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1049 DLKENIEMSVENQEELRILRDELkrqqEIAAQEKDHVteksEELSRAHERLAEIEEKLKEKNEFRNqALALERVETERLE 1128
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEAL----EDAREQIELL----EPIRELAERYAAARERLAELEYLRA-ALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1129 LAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKeyaREMESAGLQTKEQLniahanlkeyQEIIKELRGSISEKEA 1208
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELE---AQIRGNGGDRLEQL----------EREIERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1209 QASSTQDTGKTnpasQGETPVPREQELLPDAEEARASAEKGSELEpvEEHSRTAHSLttegiEMEILALTKKLEESQKEI 1288
Cdd:COG4913 360 RRARLEALLAA----LGLPLPASAEEFAALRAEAAALLEALEEEL--EALEEALAEA-----EAALRDLRRELRELEAEI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1289 SCLTKERSDLRRTQEALQVE-CAQLKDDAR--RTLANHLE--TEEEL----------SLARcclkeqenkidSLIVSlSQ 1353
Cdd:COG4913 429 ASLERRKSNIPARLLALRDAlAEALGLDEAelPFVGELIEvrPEEERwrgaiervlgGFAL-----------TLLVP-PE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1354 KEAELSSV--------RVQLEvttgelerKVQELCEKQEQLNIKETS---EVQGKMSEL-DHIRALLlTKDSALQSVES- 1420
Cdd:COG4913 497 HYAAALRWvnrlhlrgRLVYE--------RVRTGLPDPERPRLDPDSlagKLDFKPHPFrAWLEAEL-GRRFDYVCVDSp 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1421 DRLR-------LNKQLEESQE--EIKILIKEREEL------RRAQEALHVEREQQQESIKEISTRLQELQDKEyeylvmk 1485
Cdd:COG4913 568 EELRrhpraitRAGQVKGNGTrhEKDDRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAEL------- 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1486 slnetqgnkcedlnQQLEAQKSSLEKVemqnvnltQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKksleetitkn 1565
Cdd:COG4913 641 --------------DALQERREALQRL--------AEYSWDEIDVASAEREIAELEAELERLDASSDDLA---------- 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1566 qELQEkghQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREER 1645
Cdd:COG4913 689 -ALEE---QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1646 DQLRESLRQTEASDLEKQEKLRiahldlkehqETIERLMGSVAKR-TEEVSDMNMELErANTRLQEKVQELKASELQllk 1724
Cdd:COG4913 765 RELRENLEERIDALRARLNRAE----------EELERAMRAFNREwPAETADLDADLE-SLPEYLALLDRLEEDGLP--- 830
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1958755386 1725 skveagETKKQLKEQGLALSKIEMENLNlaQQIHQNLEEMK 1765
Cdd:COG4913 831 ------EYEERFKELLNENSIEFVADLL--SKLRRAIREIK 863
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
687-921 |
1.38e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 53.78 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 687 ADLEKELQLAFQEISKLSALVDGKGLLSNL-ELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRR---- 761
Cdd:PRK05771 66 LPKLNPLREEKKKVSVKSLEELIKDVEEELeKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGfkyv 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 762 -----ELHEKSEELCVITTEREKLFsemahkdsriqglleEIGNTKD-DLAASQLSQRSSDEECQALKSLHVElkhrqEE 835
Cdd:PRK05771 146 svfvgTVPEDKLEELKLESDVENVE---------------YISTDKGyVYVVVVVLKELSDEVEEELKKLGFE-----RL 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 836 VLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQ---SAEKEKNLLTEKLQQTlEEVRALTQ--EK 910
Cdd:PRK05771 206 ELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYeylEIELERAEALSKFLKT-DKTFAIEGwvPE 284
|
250
....*....|.
gi 1958755386 911 NDLKQLQESLQ 921
Cdd:PRK05771 285 DRVKKLKELID 295
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1298-1981 |
1.45e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1298 LRRTQEALQvecaQLKDDAR--RTLANHLETEEELSLARCCLKEQENKID--SLIVSLSQKEAELSSVRVQLEVTTGELE 1373
Cdd:TIGR02168 181 LERTRENLD----RLEDILNelERQLKSLERQAEKAERYKELKAELRELElaLLVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1374 RKVQELCEKQEQLNIKEtSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEAL 1453
Cdd:TIGR02168 257 ELTAELQELEEKLEELR-LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1454 HVEREQQQESIKEISTRLQELQDK----EYEYLVMKSLN-------ETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQR 1522
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAEleelEAELEELESRLeeleeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1523 LNETLEEMKSVAKERDELRSveERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNST 1602
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1603 LESIEIEKLKLTQQLNENLKE-----------MTLVAKENDDLKIMDEALREERDQLR-----------ESLRQTEAS-- 1658
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNqsglsgilgvlSELISVDEGYEAAIEAALGGRLQAVVvenlnaakkaiAFLKQNELGrv 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1659 -----DLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSD------------------------------------- 1696
Cdd:TIGR02168 574 tflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldnalelakklrpgyrivtldgd 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1697 -------MNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEqglalskiemenlnlAQQIHQNLEEmksisk 1769
Cdd:TIGR02168 654 lvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE---------------LRKELEELEE------ 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1770 ERDDLKRMEEILRMEKDQLKDSLREAKfKAHQNYEETVQYGKGLLCGGEQHCTGRLREKCLRIEKLLKRYSEMANDYECL 1849
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLE-AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1850 NRFSLDLEKETKTQKELSvTIKTKLSLPYTQTKEIEKLLTANqrcsmefHRILKKLKYVLSYITRIKEEQHEFINKfemA 1929
Cdd:TIGR02168 792 EQLKEELKALREALDELR-AELTLLNEEAANLRERLESLERR-------IAATERRLEDLEEQIEELSEDIESLAA---E 860
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1930 FIQEVEKQNELQIKIQSLSQ--TSNIPSRDSQSKLSQEMDLHIEEILKDFSEND 1981
Cdd:TIGR02168 861 IEELEELIEELESELEALLNerASLEEALALLRSELEELSEELRELESKRSELR 914
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1303-1729 |
2.06e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1303 EALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELcek 1382
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL--- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1383 QEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKER--------EELRRAQEALH 1454
Cdd:COG4717 126 QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1455 VEREQQQESIKEISTRLQELQdKEYEYLVMKSLNETQGNKCEDLNQQLEAQkSSLEKVEMQNVNLTQRLNETLEEMKSVA 1534
Cdd:COG4717 206 QRLAELEEELEEAQEELEELE-EELEQLENELEAAALEERLKEARLLLLIA-AALLALLGLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1535 ---------KERDELRSVEERLTADRDQLKKSLEETITKNQeLQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLES 1605
Cdd:COG4717 284 gllallfllLAREKASLGKEAEELQALPALEELEEEELEEL-LAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1606 IEIEKLkltQQLNENLKEMTLVAKENDDLKIMDEAlrEERDQLRESLRQTEA--SDLEKQEKLRIAHLDLKEHQETIERL 1683
Cdd:COG4717 363 LQLEEL---EQEIAALLAEAGVEDEEELRAALEQA--EEYQELKEELEELEEqlEELLGELEELLEALDEEELEEELEEL 437
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1958755386 1684 MGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEA 1729
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKA 483
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
497-936 |
2.18e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 2.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKekneleefEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYnQDL 576
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQ--------LLPLYQELEALEAELAELPERLEELEERLEEL-REL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 577 ENELSSKVELLKEKEDQIKELQRyidaQKSETTKTDLSYSSEATEDLKQAMRTLsdldtvaldaKRESAFLRSENLELKE 656
Cdd:COG4717 162 EEELEELEAELAELQEELEELLE----QLSLATEEELQDLAEELEELQQRLAEL----------EEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 657 RINELSDsckqmENGIQMYQRQLEAKKQVQADL---------EKELQLAFQEISKLSALVDGKGLLSNLELEKRITDLQK 727
Cdd:COG4717 228 ELEQLEN-----ELEAAALEERLKEARLLLLIAaallallglGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 728 ELNK--EVEEKETLQKE--VHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDS--RIQGLLEEIGNT 801
Cdd:COG4717 303 EAEElqALPALEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELeqEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 802 KDDLAASQLSQrssDEECQALKSLHVELKHRQEEVLEESERVKQELSQKT--QELAQKTAEGQEMLNQMEELREKLERRD 879
Cdd:COG4717 383 DEEELRAALEQ---AEEYQELKEELEELEEQLEELLGELEELLEALDEEEleEELEELEEELEELEEELEELREELAELE 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755386 880 SSLQSAEKEKNL--LTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVN 936
Cdd:COG4717 460 AELEQLEEDGELaeLLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVL 518
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1015-1752 |
2.33e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1015 ETEEQRKIDSLLQENSRLQQTLESIIAEKEQLkMDLKENIEMSVEN----QEELRILRDELKRQQEIAAQEkdhvteksE 1090
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRL-VEMARELAELNEAesdlEQDYQAASDHLNLVQTALRQQ--------E 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1091 ELSRAHERLAEIEEKLKEKNEFRnqALALERVET--ERLELAQklhenyekmESITKERNDLKELQESFEIEKKQLKEYa 1168
Cdd:PRK04863 349 KIERYQADLEELEERLEEQNEVV--EEADEQQEEneARAEAAE---------EEVDELKSQLADYQQALDVQQTRAIQY- 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1169 REMESAGLQTKEQLNIAH---ANLKEYQEIIKELRGSISEK---------EAQASSTQDTGKTNPASQGETPVPREQ--- 1233
Cdd:PRK04863 417 QQAVQALERAKQLCGLPDltaDNAEDWLEEFQAKEQEATEEllsleqklsVAQAAHSQFEQAYQLVRKIAGEVSRSEawd 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1234 ---ELLPDAEEARASAEKG-------SELEPVEEHSRTAHSLTTE-----------GIEMEILA--LTKKLEESQKEISC 1290
Cdd:PRK04863 497 varELLRRLREQRHLAEQLqqlrmrlSELEQRLRQQQRAERLLAEfckrlgknlddEDELEQLQeeLEARLESLSESVSE 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1291 LTKERSDLRRTQEALQVECAQLK------------------------DDARR---TLANHLETEEELSLARCCLKEQENK 1343
Cdd:PRK04863 577 ARERRMALRQQLEQLQARIQRLAarapawlaaqdalarlreqsgeefEDSQDvteYMQQLLERERELTVERDELAARKQA 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1344 IDSLIVSLSQKE-AELSSVRVQLEVTTGELerkVQELCEKQEQLNIKETSEVQGK------MSELDHIRALLLTKDSALQ 1416
Cdd:PRK04863 657 LDEEIERLSQPGgSEDPRLNALAERFGGVL---LSEIYDDVSLEDAPYFSALYGParhaivVPDLSDAAEQLAGLEDCPE 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1417 SV---ESDRLRLNKQLEESQEEIK-ILIKERE-ELRRAQ----------------EALHVEREQQQESIKEISTRLQELQ 1475
Cdd:PRK04863 734 DLyliEGDPDSFDDSVFSVEELEKaVVVKIADrQWRYSRfpevplfgraarekriEQLRAEREELAERYATLSFDVQKLQ 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1476 --------------------DKEYEylvMKSLNE---TQGNKCEDLNQQLEAQKSSLEKVEmqnvNLTQRLNETLEEMKS 1532
Cdd:PRK04863 814 rlhqafsrfigshlavafeaDPEAE---LRQLNRrrvELERALADHESQEQQQRSQLEQAK----EGLSALNRLLPRLNL 886
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1533 VAKErdelrSVEERLTADRDQLKKSLEEtitkNQELQEKGHQLSQVK---ADLRETMDQMEQLKEQLEAQNSTLESIEIE 1609
Cdd:PRK04863 887 LADE-----TLADRVEEIREQLDEAEEA----KRFVQQHGNALAQLEpivSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQ 957
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1610 KLKLTqQLNENL------KEMTLVAKE---NDDLKIMDEALREERDQLRESLRQteasdleKQEKLRIAHLDLKEHQETI 1680
Cdd:PRK04863 958 AFALT-EVVQRRahfsyeDAAEMLAKNsdlNEKLRQRLEQAEQERTRAREQLRQ-------AQAQLAQYNQVLASLKSSY 1029
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1681 ERLMGSVAKRTEEVSDM------NMElERANTRLQEKVQELKASELQllkskveagetKKQLkEQGLALSKIEMENLN 1752
Cdd:PRK04863 1030 DAKRQMLQELKQELQDLgvpadsGAE-ERARARRDELHARLSANRSR-----------RNQL-EKQLTFCEAEMDNLT 1094
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1017-1752 |
2.37e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.42 E-value: 2.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1017 EEQRKIDSLLQENSRLQQTLESIIAEKEQLkmdlkenIEMSVENQE----------ELRILRDELKR-QQEIAAQEKdhV 1085
Cdd:COG3096 279 ERRELSERALELRRELFGARRQLAEEQYRL-------VEMARELEElsaresdleqDYQAASDHLNLvQTALRQQEK--I 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1086 TEKSEELSRAHERLAEIEEKLKEKNEFRNQALA-LERVETERLELAQKL-----------------HENYEKMESiTKER 1147
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEArLEAAEEEVDSLKSQLadyqqaldvqqtraiqyQQAVQALEK-ARAL 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1148 NDLKEL-QESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASStqdtgktnpasqge 1226
Cdd:COG3096 429 CGLPDLtPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAW-------------- 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1227 tpvPREQELLPDAEEARASAEKG-------SELEPVEEHSRTAHSLTTE-------------GIEMEILALTKKLEESQK 1286
Cdd:COG3096 495 ---QTARELLRRYRSQQALAQRLqqlraqlAELEQRLRQQQNAERLLEEfcqrigqqldaaeELEELLAELEAQLEELEE 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1287 EISCLTKERSDLRRTQEALQVECAQLKDDARRTLA-----NHLETEEELSLarcclkEQENKIDSLIVSLSQKEAELSSV 1361
Cdd:COG3096 572 QAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAaqdalERLREQSGEAL------ADSQEVTAAMQQLLEREREATVE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1362 RVQLEVTTGELERKVQELC-----EKQEQLNIKET------SEVQGKMSELD--HIRALLLTKDSALqsVESDRLRLNKQ 1428
Cdd:COG3096 646 RDELAARKQALESQIERLSqpggaEDPRLLALAERlggvllSEIYDDVTLEDapYFSALYGPARHAI--VVPDLSAVKEQ 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1429 L---EESQEEIKIL----------IKEREEL-------------------------RRAQE----ALHVEREQQQESIKE 1466
Cdd:COG3096 724 LaglEDCPEDLYLIegdpdsfddsVFDAEELedavvvklsdrqwrysrfpevplfgRAAREkrleELRAERDELAEQYAK 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1467 ISTRLQELQ--DKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEmksvAKER-DELRSV 1543
Cdd:COG3096 804 ASFDVQKLQrlHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQ----LKEQlQLLNKL 879
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1544 --------EERLTADRDQLKKSLEETITKNQELQEKGHQLSQVK---ADLRETMDQMEQLKEQLEAQNSTLESIEIEKLK 1612
Cdd:COG3096 880 lpqanllaDETLADRLEELREELDAAQEAQAFIQQHGKALAQLEplvAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFA 959
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1613 LTQqlnenlkemtLVAKEN----DDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVA 1688
Cdd:COG3096 960 LSE----------VVQRRPhfsyEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRD 1029
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1689 KRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLN 1752
Cdd:COG3096 1030 AKQQTLQELEQELEELGVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQ 1093
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1017-1563 |
2.58e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1017 EEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKE-NIEMSVENQEELRILRDELKRQQEIaaQEKDHVTEKSEELSR- 1094
Cdd:PRK01156 208 DDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNElSSLEDMKNRYESEIKTAESDLSMEL--EKNNYYKELEERHMKi 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1095 ----AHERLAEIEEKLKEKNEFRNQALALERVETE---------RLELAQKLHENYEKMES----ITKERNDLKE----- 1152
Cdd:PRK01156 286 indpVYKNRNYINDYFKYKNDIENKKQILSNIDAEinkyhaiikKLSVLQKDYNDYIKKKSryddLNNQILELEGyemdy 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1153 --LQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQdtGKTNPASQGETPVP 1230
Cdd:PRK01156 366 nsYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLN--QRIRALRENLDELS 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1231 REQELLpdaEEARASAEKGSEL-EPVEEHSRTAHSLTTEGIEMEIlaltkklEESQKEISCLTKERSDLRRTQEALQvec 1309
Cdd:PRK01156 444 RNMEML---NGQSVCPVCGTTLgEEKSNHIINHYNEKKSRLEEKI-------REIEIEVKDIDEKIVDLKKRKEYLE--- 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1310 aqlKDDARRTLANHleteEELSLARCCLKEQENKIDSLivslsqKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIK 1389
Cdd:PRK01156 511 ---SEEINKSINEY----NKIESARADLEDIKIKINEL------KDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVI 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1390 ETSEVQGKMSELDHIRALLLTKDSALQSVES----DRLRLNKQLEESQEEIKIL---IKEREELRRAQEALhverEQQQE 1462
Cdd:PRK01156 578 SLIDIETNRSRSNEIKKQLNDLESRLQEIEIgfpdDKSYIDKSIREIENEANNLnnkYNEIQENKILIEKL----RGKID 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1463 SIKEISTRLQELQDKEYEYLVMKSLNETQGNKCE----DLNQQLEAQKSSLEKVEMQNVNLTQRLNE---TLEEMKSVAK 1535
Cdd:PRK01156 654 NYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRkaldDAKANRARLESTIEILRTRINELSDRINDineTLESMKKIKK 733
|
570 580 590
....*....|....*....|....*....|
gi 1958755386 1536 ERDELRSVEERLTADRDQ--LKKSLEETIT 1563
Cdd:PRK01156 734 AIGDLKRLREAFDKSGVPamIRKSASQAMT 763
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
832-1083 |
2.99e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 2.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 832 RQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEvraltqekn 911
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE--------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 912 dLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKmKATEEMSDHLpikgregssDEVEQKLD 991
Cdd:COG4942 92 -IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK-YLAPARREQA---------EELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 992 GIDEENLLAEsahtvvgsgedhgetEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEmsvENQEELRILRDEL 1071
Cdd:COG4942 161 ELAALRAELE---------------AERAELEALLAELEEERAALEALKAERQKLLARLEKELA---ELAAELAELQQEA 222
|
250
....*....|...
gi 1958755386 1072 KR-QQEIAAQEKD 1083
Cdd:COG4942 223 EElEALIARLEAE 235
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1427-1796 |
4.69e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1427 KQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylvmkslnetqgnkcedlnQQLEAQK 1506
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-------------------LQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1507 SSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEET-ITKNQELQEKGHQLSQVKADLRET 1585
Cdd:COG4717 132 QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1586 MDQMEQLKEQLEAQNSTLEsiEIEKLKLTQQLNENLKEMT-----------------------------------LVAKE 1630
Cdd:COG4717 212 EEELEEAQEELEELEEELE--QLENELEAAALEERLKEARlllliaaallallglggsllsliltiagvlflvlgLLALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1631 NDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMN-----MELERAN 1705
Cdd:COG4717 290 FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEeleeeLQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1706 TRLQEKVQELKASELQLLKSKVEAGETKKQLKEQgLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEK 1785
Cdd:COG4717 370 QEIAALLAEAGVEDEEELRAALEQAEEYQELKEE-LEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEEL 448
|
410
....*....|.
gi 1958755386 1786 DQLKDSLREAK 1796
Cdd:COG4717 449 EELREELAELE 459
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1404-1788 |
5.50e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 52.27 E-value: 5.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1404 IRALLLTKDsALQSVESDRLRLNKQLEESQ-----------EEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQ 1472
Cdd:PRK04863 239 LRENRMTLE-AIRVTQSDRDLFKHLITESTnyvaadymrhaNERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELA 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1473 ELQDKEyeylvmkslnetqgnkcEDLNQQLEAQKSSL----------EKVEMQNVNLtQRLNETLEEMKSVAKERDELR- 1541
Cdd:PRK04863 318 ELNEAE-----------------SDLEQDYQAASDHLnlvqtalrqqEKIERYQADL-EELEERLEEQNEVVEEADEQQe 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1542 SVEERLTA---DRDQLKKSLEETITKNQELQEKGHQLSQVKADLRE----------TMDQMEQLKEQLEAQnstLESIEI 1608
Cdd:PRK04863 380 ENEARAEAaeeEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERakqlcglpdlTADNAEDWLEEFQAK---EQEATE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1609 EKLKLTQQLN--ENLKE-----MTLVAKenddlkIMDEALREE-RDQLRESLRQ--TEASDLEKQEKLRIAHLDLK---E 1675
Cdd:PRK04863 457 ELLSLEQKLSvaQAAHSqfeqaYQLVRK------IAGEVSRSEaWDVARELLRRlrEQRHLAEQLQQLRMRLSELEqrlR 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1676 HQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLN--- 1752
Cdd:PRK04863 531 QQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAaqd 610
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1753 ------------------LAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQL 1788
Cdd:PRK04863 611 alarlreqsgeefedsqdVTEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1399-1729 |
6.85e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 51.38 E-value: 6.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1399 SELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEAlhvEREQQQESIKEISTRLQELQDke 1478
Cdd:PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLA---NRFSFGPALDELEKQLENLEE-- 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1479 yEYLVMKSLNEtQGNKCE------DLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKER-------DELrSVEE 1545
Cdd:PRK04778 180 -EFSQFVELTE-SGDYVEareildQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELveegyhlDHL-DIEK 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1546 RLTADRDQLKKS--------LEETITKNQELQEKGHQLSQV-------KADLRETMDQMEQLKEQLEAQNSTLeSIEIEK 1610
Cdd:PRK04778 257 EIQDLKEQIDENlalleeldLDEAEEKNEEIQERIDQLYDIlerevkaRKYVEKNSDTLPDFLEHAKEQNKEL-KEEIDR 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1611 LKLTQQLNENLKEMTlvakenddlkimdEALREERDQLRESLRQteasDLEKQEKLRIAHLDLKEHQETIERLMGSVAKR 1690
Cdd:PRK04778 336 VKQSYTLNESELESV-------------RQLEKQLESLEKQYDE----ITERIAEQEIAYSELQEELEEILKQLEEIEKE 398
|
330 340 350
....*....|....*....|....*....|....*....
gi 1958755386 1691 TEEVSDMNMELERANTRLQEKVQELKaSELQLLKSKVEA 1729
Cdd:PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYR-NKLHEIKRYLEK 436
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1088-1714 |
7.36e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 7.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1088 KSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETERLELAQKLHENYEKMESITKERndlkelqesfeieKKQLKEY 1167
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAAR-------------KQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1168 AREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQasstqdtgktnpasqgetpvprEQELLPDAEEARASAE 1247
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAA----------------------RQKLQLEKVTTEAKIK 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1248 KGSELEPVEEHSRTAHSLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETE 1327
Cdd:pfam01576 135 KLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLE 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1328 EELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGelerkvqelcekQEQLNIKETSEVQGKMSELDHiral 1407
Cdd:pfam01576 215 GESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETA------------QKNNALKKIRELEAQISELQE---- 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1408 lltkdsALQSVESDRLRLNKQLEESQEEIKILIKEREEL---RRAQEALHVEREQQQESIK---EISTRLQELQdkeyey 1481
Cdd:pfam01576 279 ------DLESERAARNKAEKQRRDLGEELEALKTELEDTldtTAAQQELRSKREQEVTELKkalEEETRSHEAQ------ 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1482 lvMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEET 1561
Cdd:pfam01576 347 --LQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSES 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1562 ITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESieieKLKLTQQLnenLKEMTLvAKENDDLKImdEAL 1641
Cdd:pfam01576 425 ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES----QLQDTQEL---LQEETR-QKLNLSTRL--RQL 494
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 1642 REERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQE 1714
Cdd:pfam01576 495 EDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAA 567
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1415-1588 |
8.19e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 8.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1415 LQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYlvMKSLNETQGNK 1494
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKY--EEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1495 cedlnqQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETItknQELQEKGHQ 1574
Cdd:COG1579 90 ------EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL---AELEAELEE 160
|
170
....*....|....
gi 1958755386 1575 LSQVKADLRETMDQ 1588
Cdd:COG1579 161 LEAEREELAAKIPP 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
676-911 |
8.73e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 8.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 676 QRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEVEEKETLQKEvhllseLKSLPSE 755
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLA--------ALERRIAALARRIRALEQELAALEAE------LAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 756 VETLRRELHEKSEELcvittEREKLFSEMAHKDSRIQGLL--EEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQ 833
Cdd:COG4942 92 IAELRAELEAQKEEL-----AELLRALYRLGRQPPLALLLspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 834 EEVLEES---ERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEK 910
Cdd:COG4942 167 AELEAERaelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
.
gi 1958755386 911 N 911
Cdd:COG4942 247 G 247
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
589-923 |
8.91e-06 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 51.01 E-value: 8.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 589 EKEDQIKELQRYIDAQKSETTKTDLSYSSEATEDLKQamrtlsdldtvALDAKRESAFlrsENLELKERINELSDSCKQM 668
Cdd:PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKK-----------EIDLEYTEAV---IAMGLQERLENLREEFSKA 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 669 ENGIQMYQRQLEAK-KQVQADLEKELQLAFQEIS---KLSALVDGKGLLSNLELEKRITDLQKELNKEVeeketlqKEVH 744
Cdd:PLN03229 499 NSQDQLMHPVLMEKiEKLKDEFNKRLSRAPNYLSlkyKLDMLNEFSRAKALSEKKSKAEKLKAEINKKF-------KEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 745 LLSELKslpSEVETLRRELHEkseelcvittereklfSEMAHKDSRIQGLLEEIGNTKDDLAASQLS-QRSSDEECQALK 823
Cdd:PLN03229 572 DRPEIK---EKMEALKAEVAS----------------SGASSGDELDDDLKEKVEKMKKEIELELAGvLKSMGLEVIGVT 632
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 824 SLHVELKHRQ--EEVLEESERVKQELSQKTQELAQKTaegqEMLNQMEELREKLERRDSSLQSAEKEKnllTEKLQQTLE 901
Cdd:PLN03229 633 KKNKDTAEQTppPNLQEKIESLNEEINKKIERVIRSS----DLKSKIELLKLEVAKASKTPDVTEKEK---IEALEQQIK 705
|
330 340
....*....|....*....|..
gi 1958755386 902 EVRALTQEKNDLKQLQESLQTE 923
Cdd:PLN03229 706 QKIAEALNSSELKEKFEELEAE 727
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1412-1632 |
9.75e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 9.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1412 DSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQdkeyeylvmKSLNETQ 1491
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---------AEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1492 gnkcEDLNQQLEAQKSSLEKVEMQNVNLTQR-LNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQE 1570
Cdd:COG3883 86 ----EELGERARALYRSGGSVSYLDVLLGSEsFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 1571 KGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESieiEKLKLTQQLNENLKEMTLVAKEND 1632
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEA---QLAELEAELAAAEAAAAAAAAAAA 220
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
523-743 |
1.08e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 523 ENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYNQDLENELSSKVELLKEKEDQIKELQRYID 602
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 603 AQKSETTK-TDLSYSSEATEDLKQAMRTLSdldtvALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEA 681
Cdd:COG4942 101 AQKEELAElLRALYRLGRQPPLALLLSPED-----FLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 682 KKQVQADLEKELQLAFQEISKLSALVDgkgllsnlELEKRITDLQKELNKEVEEKETLQKEV 743
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLA--------RLEKELAELAAELAELQQEAEELEALI 229
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
498-805 |
1.09e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 498 NLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYNQDLE 577
Cdd:TIGR04523 332 QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 578 NELSSKVELLKEKEDQIKELQRYIDAQKSE-----TTKTDLSYSSEATEDLKQAMRTlsDLDTVALDAKRESAFLRSENL 652
Cdd:TIGR04523 412 EQIKKLQQEKELLEKEIERLKETIIKNNSEikdltNQDSVKELIIKNLDNTRESLET--QLKVLSRSINKIKQNLEQKQK 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 653 ELKER---INELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKL-SALVDGKGLLSNLELEKRITDLQKE 728
Cdd:TIGR04523 490 ELKSKekeLKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLeDELNKDDFELKKENLEKEIDEKNKE 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 729 LNKEVEEKETL---QKEVHLL-----SELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGN 800
Cdd:TIGR04523 570 IEELKQTQKSLkkkQEEKQELidqkeKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
....*
gi 1958755386 801 TKDDL 805
Cdd:TIGR04523 650 IKETI 654
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
516-1053 |
1.15e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.88 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 516 DYEQLRRENEDLKLKL--KEKNELEEFEFLEQREEKDQELQLMHEVSNLK--NLIKHAEEYNQDLENELSSKVELLKEKE 591
Cdd:pfam05483 220 DHEKIQHLEEEYKKEIndKEKQVSLLLIQITEKENKMKDLTFLLEESRDKanQLEEKTKLQDENLKELIEKKDHLTKELE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 592 DQIKELQRYIDAQKSE------TTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSC 665
Cdd:pfam05483 300 DIKMSLQRSMSTQKALeedlqiATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 666 KQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNLE-----LEKRITDLQKELNKEVEEKE--- 737
Cdd:pfam05483 380 KIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAeelkgKEQELIFLLQAREKEIHDLEiql 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 738 --TLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDD----LAASQLS 811
Cdd:pfam05483 460 taIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQeermLKQIENL 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 812 QRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNL 891
Cdd:pfam05483 540 EEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKA 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 892 LTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQEtiNMLKMKATEEMS 971
Cdd:pfam05483 620 LKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIAD--EAVKLQKEIDKR 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 972 DHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLK 1051
Cdd:pfam05483 698 CQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
..
gi 1958755386 1052 EN 1053
Cdd:pfam05483 778 EN 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
810-1482 |
1.15e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 810 LSQRSSDEECQALKSLHVELKHRQEEVLEESERVK--QELSQKTQELAQKTAEgqemLNQMEELREKLErrdssLQSAEK 887
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDAREQIEllEPIRELAERYAAARER----LAELEYLRAALR-----LWFAQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 888 EKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQdtvnmNIDTQEqllnaLESLKQHQETinmlkmkAT 967
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR-----GNGGDR-----LEQLEREIER-------LE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 968 EEmsdhlpIKGREGSSDEVEQKLDGIDE---------ENLLAESAHTVVGSGEDHGETEEQRkiDSLLQENSRLQQTLES 1038
Cdd:COG4913 352 RE------LEERERRRARLEALLAALGLplpasaeefAALRAEAAALLEALEEELEALEEAL--AEAEAALRDLRRELRE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1039 IIAEKEQLKmDLKENIEmsvenqEELRILRDELKRQQEIAAQEKDHVTE----KSEELS--RAHERLaeieeklkekneF 1112
Cdd:COG4913 424 LEAEIASLE-RRKSNIP------ARLLALRDALAEALGLDEAELPFVGElievRPEEERwrGAIERV------------L 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1113 RNQAL-----------ALERVETERLELA---QKLHENYEKMESITKERNDL----------------KELQESFEIEK- 1161
Cdd:COG4913 485 GGFALtllvppehyaaALRWVNRLHLRGRlvyERVRTGLPDPERPRLDPDSLagkldfkphpfrawleAELGRRFDYVCv 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1162 ---KQLKEYAREMESAGL------------------------QTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQ 1214
Cdd:COG4913 565 dspEELRRHPRAITRAGQvkgngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1215 DTGktnPASQGETPVPREQELLPDAEEARASAEKgsELEPVEEHSRtahslttegiemEILALTKKLEESQKEISCLTKE 1294
Cdd:COG4913 645 ERR---EALQRLAEYSWDEIDVASAEREIAELEA--ELERLDASSD------------DLAALEEQLEELEAELEELEEE 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1295 RSDLRRTQEALQVE---CAQLKDDARRTLANHLETEEELSLARCclkeqENKIDSLIVSLSQKEAElSSVRVQLEVTTGE 1371
Cdd:COG4913 708 LDELKGEIGRLEKEleqAEEELDELQDRLEAAEDLARLELRALL-----EERFAAALGDAVERELR-ENLEERIDALRAR 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1372 LERKVQELCEKQEQLNIK---ETSEVQGKMSELDHIRALLltkdsalqsvesDRLRlNKQLEESQEEIKILIKEREELRR 1448
Cdd:COG4913 782 LNRAEEELERAMRAFNREwpaETADLDADLESLPEYLALL------------DRLE-EDGLPEYEERFKELLNENSIEFV 848
|
730 740 750
....*....|....*....|....*....|....*.
gi 1958755386 1449 A--QEALHVEREQQQESIKEISTRLQELQDKEYEYL 1482
Cdd:COG4913 849 AdlLSKLRRAIREIKERIDPLNDSLKRIPFGPGRYL 884
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1337-1796 |
1.25e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.67 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1337 LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLN-----IKETSEVQGKMSELDHIRALLLTK 1411
Cdd:PRK01156 192 LKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNelsslEDMKNRYESEIKTAESDLSMELEK 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1412 DSALQSVESDRLRL-NKQLEESQEEIKILIKEREELRRAQEALHvEREQQQESIKEISTRLQELQDKEYEYLVMKSlnet 1490
Cdd:PRK01156 272 NNYYKELEERHMKIiNDPVYKNRNYINDYFKYKNDIENKKQILS-NIDAEINKYHAIIKKLSVLQKDYNDYIKKKS---- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1491 qgnKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQE 1570
Cdd:PRK01156 347 ---RYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1571 KGHQLSQVKADLRETMDQMEQLKEQLEAQN------STLESIEIEKLkltqqLNENLKEMTLVAKENDDLKIMDEALREE 1644
Cdd:PRK01156 424 KVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgTTLGEEKSNHI-----INHYNEKKSRLEEKIREIEIEVKDIDEK 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1645 RDQLRESLRQTEASDLEKQE----KLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNM----ELERANTRLQEKVQELK 1716
Cdd:PRK01156 499 IVDLKKRKEYLESEEINKSIneynKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSlkleDLDSKRTSWLNALAVIS 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1717 ASELQLLKSKVEagETKKQLKEQGLALSKIEME-------NLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLK 1789
Cdd:PRK01156 579 LIDIETNRSRSN--EIKKQLNDLESRLQEIEIGfpddksyIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYK 656
|
....*..
gi 1958755386 1790 DSLREAK 1796
Cdd:PRK01156 657 KQIAEID 663
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1489-1888 |
1.28e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1489 ETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQEL 1568
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1569 QEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEiEKLKLTQQLNENLKEMtlvakenddlkimdEALREERDQL 1648
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-EKVKELKELKEKAEEY--------------IKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1649 RESLRqteasdlekqeklriahlDLKEHQETIERLMGSVAKRTEEVSDMNMELErantRLQEKVQELKaSELQLLKSKVE 1728
Cdd:PRK03918 306 LDELR------------------EIEKRLSRLEEEINGIEERIKELEEKEERLE----ELKKKLKELE-KRLEELEERHE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1729 AGETKKQLKEQGLALSK-IEMENLNLAQQIHQNLEEMK-SISKERDDLKRMEEILRMEKDQLKDSLREAKfKAHqnyeet 1806
Cdd:PRK03918 363 LYEEAKAKKEELERLKKrLTGLTPEKLEKELEELEKAKeEIEEEISKITARIGELKKEIKELKKAIEELK-KAK------ 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1807 vqyGKGLLCG---GEQHCTGRLREKCLRIEKLLKRYSEMANDYECLNRFSLDLEKETKTQKELSVTIKTklslpYTQTKE 1883
Cdd:PRK03918 436 ---GKCPVCGrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL-----AEQLKE 507
|
....*
gi 1958755386 1884 IEKLL 1888
Cdd:PRK03918 508 LEEKL 512
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1019-1230 |
1.34e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1019 QRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKR-QQEIAAQEKDHVTEKSE--ELSRA 1095
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAElEKEIAELRAELEAQKEElaELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1096 HERLAEIEEKL-----KEKNEFRNQALALERVETERLELAQKLHENYEKME----SITKERNDLKELQESFEIEKKQLKE 1166
Cdd:COG4942 113 LYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalraELEAERAELEALLAELEEERAALEA 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755386 1167 YAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSIS--EKEAQASSTQDTGKTNPASQGETPVP 1230
Cdd:COG4942 193 LKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAERTPAAGFAALKGKLPWP 258
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
583-1211 |
1.58e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 583 KVELLKEKEDQIKELQRYIDAQKSETTKTdlsySSEATEDLKQAMRTLSDLDTVALDakresaflrsenlELKERINELS 662
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEAR----LDALREELDELEAQIRGNGGDRLE-------------QLEREIERLE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 663 DSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISklSALVDGKGLLSnlELEKRITDLQKELNKEVEEKETLQKE 742
Cdd:COG4913 352 RELEERERRRARLEALLAALGLPLPASAEEFAALRAEAA--ALLEALEEELE--ALEEALAEAEAALRDLRRELRELEAE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 743 VHLLSELKS-LPSEVETLRRELheksEELCVITTEREKLFSE---MAHKDSRIQGLLE-EIGNTKDDL--------AAS- 808
Cdd:COG4913 428 IASLERRKSnIPARLLALRDAL----AEALGLDEAELPFVGElieVRPEEERWRGAIErVLGGFALTLlvppehyaAALr 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 809 -----QLSQRssdeecqaLKSLHVELKHRQEEVLEESER----------------VKQELSQK--------TQELAQK-- 857
Cdd:COG4913 504 wvnrlHLRGR--------LVYERVRTGLPDPERPRLDPDslagkldfkphpfrawLEAELGRRfdyvcvdsPEELRRHpr 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 858 --TAEGqeMLNQMEELREK----LERRDSSL-QSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRsD 930
Cdd:COG4913 576 aiTRAG--QVKGNGTRHEKddrrRIRSRYVLgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-R 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 931 IQDTVNMNIDTQeQLLNALESLKQHQETInmlkmkateemsdhlpikgREGSSD--EVEQKLDGIDEEnllaesahtvvg 1008
Cdd:COG4913 653 LAEYSWDEIDVA-SAEREIAELEAELERL-------------------DASSDDlaALEEQLEELEAE------------ 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1009 sgedhgETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSvenQEELRILRDELKRQQEIAAQEKDHVTEK 1088
Cdd:COG4913 701 ------LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA---RLELRALLEERFAAALGDAVERELRENL 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1089 SEELSRAHERLAEIEEKLKEK-NEFRNQ-----------ALALERVETERLEL-AQKLHENYEKM-----ESITKERNDL 1150
Cdd:COG4913 772 EERIDALRARLNRAEEELERAmRAFNREwpaetadldadLESLPEYLALLDRLeEDGLPEYEERFkellnENSIEFVADL 851
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755386 1151 K-ELQESFEIEKKQLKEYAREMESA--GLQTKEQLNI---AHANLKEYQEIIKELRGSISEKEAQAS 1211
Cdd:COG4913 852 LsKLRRAIREIKERIDPLNDSLKRIpfGPGRYLRLEArprPDPEVREFRQELRAVTSGASLFDEELS 918
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
568-927 |
1.74e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 568 HAEEYNQDLENELSSKVELLKEKEDQIKELQRYIDAQKSETTktdlsySSEATEDLKQAMRTLSDLDTVALDAKRESAFL 647
Cdd:PRK04863 277 HANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAE------LNEAESDLEQDYQAASDHLNLVQTALRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 648 ---RSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKEL---QLAFQEISK--------LSALVDGKGLL 713
Cdd:PRK04863 351 eryQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLadyQQALDVQQTraiqyqqaVQALERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 714 SNLELE-KRITDLQKELnkEVEEKETLQKEVHLLSELkSLPSEVetlrRELHEKSEEL-CVITTE----------REKL- 780
Cdd:PRK04863 431 GLPDLTaDNAEDWLEEF--QAKEQEATEELLSLEQKL-SVAQAA----HSQFEQAYQLvRKIAGEvsrseawdvaRELLr 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 781 -FSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQA----------LKSLHVELKHRQEEVLEESERVKQ---- 845
Cdd:PRK04863 504 rLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRlgknlddedeLEQLQEELEARLESLSESVSEARErrma 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 846 ------ELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSaekeknlLTEKLQQTLEEVRALTQEKNDLKQLQES 919
Cdd:PRK04863 584 lrqqleQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQD-------VTEYMQQLLERERELTVERDELAARKQA 656
|
....*...
gi 1958755386 920 LQTERDQL 927
Cdd:PRK04863 657 LDEEIERL 664
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1411-1630 |
1.78e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.44 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1411 KDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKeyeylVMKSLNET 1490
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREE-----LGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1491 Q--GNKCEDLNQQLEAQksSLEKVeMQNVNLTQRLNE-TLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQE 1567
Cdd:COG3883 96 YrsGGSVSYLDVLLGSE--SFSDF-LDRLSALSKIADaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 1568 LQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKE 1630
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
752-1092 |
1.91e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.89 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 752 LPSEVETLRRELHEKSEELCVITTEREKLFSEMAHK----DSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHV 827
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDreqwERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 828 ELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALT 907
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 908 QEKNDLKQLQESLQTERDQLRSDI---QDTVNMNIDTQEQLLNALESLKQHQETINMLKMKAT---EEMSDHLPIKGReG 981
Cdd:pfam07888 192 KEFQELRNSLAQRDTQVLQLQDTIttlTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEglgEELSSMAAQRDR-T 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 982 SSDEVEQKLDGIDEENLLAE-SAHTVVGSGEDHGETE--------EQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKE 1052
Cdd:pfam07888 271 QAELHQARLQAAQLTLQLADaSLALREGRARWAQEREtlqqsaeaDKDRIEKLSAELQRLEERLQEERMEREKLEVELGR 350
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1958755386 1053 NIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEEL 1092
Cdd:pfam07888 351 EKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQEL 390
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1119-1477 |
2.25e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.51 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1119 LERVETERLELAQKLHENYEKMEsitKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQlniaHANLKEYQEIIKE 1198
Cdd:pfam07888 36 LEECLQERAELLQAQEAANRQRE---KEKERYKRDREQWERQRRELESRVAELKEELRQSREK----HEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1199 LRGSISEKEAQASStqdtgktnpasQGETPVPREQELLPDAEE-ARASAEKGSELEPVEEHSRTAHSLTTEgIEMEILAL 1277
Cdd:pfam07888 109 SSEELSEEKDALLA-----------QRAAHEARIRELEEDIKTlTQRVLERETELERMKERAKKAGAQRKE-EEAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1278 TKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDD----------ARRTLANHLETEEELSLARCCLKEQENKIDSL 1347
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTittltqklttAHRKEAENEALLEELRSLQERLNASERKVEGL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1348 IVSLS-------QKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRAL---LLTKDSALQS 1417
Cdd:pfam07888 257 GEELSsmaaqrdRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLsaeLQRLEERLQE 336
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1418 VESDRLRLNKQL----EESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK 1477
Cdd:pfam07888 337 ERMEREKLEVELgrekDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQR 400
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
582-1536 |
2.35e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 582 SKVELLKEKEDQIKELQRYIDAQksettktdlsysseatEDLKQamrtlsdldtVALDAKREsafLRSENLELKERINEL 661
Cdd:TIGR00606 166 SEGKALKQKFDEIFSATRYIKAL----------------ETLRQ----------VRQTQGQK---VQEHQMELKYLKQYK 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 662 SDSCkQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALvdgkgLLSNLELEKRITDLQK-ELNKEVEEKETLQ 740
Cdd:TIGR00606 217 EKAC-EIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHN-----LSKIMKLDNEIKALKSrKKQMEKDNSELEL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 741 KEVHLLSELKSLPSEVETLR-RELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEEC 819
Cdd:TIGR00606 291 KMEKVFQGTDEQLNDLYHNHqRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLI 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 820 QALKS------------LHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELR-----------EKLE 876
Cdd:TIGR00606 371 QSLATrleldgfergpfSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKkglgrtielkkEILE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 877 RRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNID-TQEQLLNALESLKQH 955
Cdd:TIGR00606 451 KKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDrKLRKLDQEMEQLNHH 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 956 QETINMLKMKATEEMSDHLPI-KGREGSSDEVEQKLDGIDEENLLAESAHTVvgSGEDHGETEEQRKIDSLLQENSRLQQ 1034
Cdd:TIGR00606 531 TTTRTQMEMLTKDKMDKDEQIrKIKSRHSDELTSLLGYFPNKKQLEDWLHSK--SKEINQTRDRLAKLNKELASLEQNKN 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1035 TLESIIAEKEQLKMDLKENIeMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEieeklkeknEFRN 1114
Cdd:TIGR00606 609 HINNELESKEEQLSSYEDKL-FDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTD---------ENQS 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1115 QALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQE 1194
Cdd:TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1195 IIKELRGSISEKEAQASSTQDTGKTNPASQGE-TPVPREQELLPDAEeaRASAEKGSELEPVE-EHSRTAHSLTTEGIEM 1272
Cdd:TIGR00606 759 DIQRLKNDIEEQETLLGTIMPEEESAKVCLTDvTIMERFQMELKDVE--RKIAQQAAKLQGSDlDRTVQQVNQEKQEKQH 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1273 EILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSlarcclkeqenKIDSLIVSLS 1352
Cdd:TIGR00606 837 ELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST-----------EVQSLIREIK 905
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1353 QKEAELSSvrvqLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLT--------KDSALQSVESDRLR 1424
Cdd:TIGR00606 906 DAKEQDSP----LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDienkiqdgKDDYLKQKETELNT 981
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1425 LNKQLEESQEEIKiliKEREELRRAQEAlhVEREQQQESIKEISTRLQELQDKeyeylvMKSLNETQGNKCEDLNQ-QLE 1503
Cdd:TIGR00606 982 VNAQLEECEKHQE---KINEDMRLMRQD--IDTQKIQERWLQDNLTLRKRENE------LKEVEEELKQHLKEMGQmQVL 1050
|
970 980 990
....*....|....*....|....*....|...
gi 1958755386 1504 AQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKE 1536
Cdd:TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKE 1083
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1186-1794 |
2.36e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.82 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1186 HANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNpasqgETPVPREQELLPDAEEARASAEKgselepveEHSRTAHSl 1265
Cdd:pfam10174 2 QAQLRDLQRENELLRRELDIKESKLGSSMNSIKTF-----WSPELKKERALRKEEAARISVLK--------EQYRVTQE- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1266 TTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKID 1345
Cdd:pfam10174 68 ENQHLQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1346 SLIVSLsqkEAELSSVRVQLEVTTGelerkvQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRL 1425
Cdd:pfam10174 148 TQKQTL---GARDESIKKLLEMLQS------KGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRR 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1426 NKQLEESQE-----------EIKILIKER------EELRRAQEALHVEREQQQESIKE--------------ISTRLQEL 1474
Cdd:pfam10174 219 NQLQPDPAKtkalqtviemkDTKISSLERnirdleDEVQMLKTNGLLHTEDREEEIKQmevykshskfmknkIDQLKQEL 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1475 QDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEmQNVNLTQ----RLNETLEEMKSV-AKERDELRSVEER--- 1546
Cdd:pfam10174 299 SKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKE-QRAAILQtevdALRLRLEEKESFlNKKTKQLQDLTEEkst 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1547 LTADRDQLKKSLEETITKNQELQEKGHQLSQVkadLRETMDQMEQLKE-----QLEAQNS-----TLESIEIEKLKLTQQ 1616
Cdd:pfam10174 378 LAGEIRDLKDMLDVKERKINVLQKKIENLQEQ---LRDKDKQLAGLKErvkslQTDSSNTdtaltTLEEALSEKERIIER 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1617 LNENL-KEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVS 1695
Cdd:pfam10174 455 LKEQReREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECS 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1696 DMNMELERA-NTRLQEKVQELKASELQLLKSKV-----EAGETKKQLKEQGLALSKIEMENLNLAQQIHQ----NLEEMK 1765
Cdd:pfam10174 535 KLENQLKKAhNAEEAVRTNPEINDRIRLLEQEVarykeESGKAQAEVERLLGILREVENEKNDKDKKIAEleslTLRQMK 614
|
650 660 670
....*....|....*....|....*....|
gi 1958755386 1766 SISKERDDLKRMEEILRMEK-DQLKDSLRE 1794
Cdd:pfam10174 615 EQNKKVANIKHGQQEMKKKGaQLLEEARRR 644
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1320-1963 |
2.58e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.69 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1320 LANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELcekqeQLNIKETSEVQGKMS 1399
Cdd:COG5022 818 CIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRV-----ELAERQLQELKIDVK 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1400 ELDHIRALLLTKDSAL----QSVESDRLRLNKQLEESQEEIKILIKEREelrraqealhvereqqqesIKEISTRLQELQ 1475
Cdd:COG5022 893 SISSLKLVNLELESEIielkKSLSSDLIENLEFKTELIARLKKLLNNID-------------------LEEGPSIEYVKL 953
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1476 DKEYEYL-VMKSLNETQGNKcEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQL 1554
Cdd:COG5022 954 PELNKLHeVESKLKETSEEY-EDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSAS 1032
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1555 KKSLEETITKNQELQEKG------HQLSQVKADL------RETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLK 1622
Cdd:COG5022 1033 KIISSESTELSILKPLQKlkglllLENNQLQARYkalklrRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPA 1112
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1623 EMT----LVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLdlkEHQETIERLMGSVAKRTEEVSdmn 1698
Cdd:COG5022 1113 NVLqfivAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANL---EALPSPPPFAALSEKRLYQSA--- 1186
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1699 melerantrLQEKVQELKASELQLLKSKVEAgetkKQLKEQGLALSKIEMenLNLAQQIHQNLEEMKSISKERDDLKRME 1778
Cdd:COG5022 1187 ---------LYDEKSKLSSSEVNDLKNELIA----LFSKIFSGWPRGDKL--KKLISEGWVPTEYSTSLKGFNNLNKKFD 1251
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1779 EILRMEKDQL---KDSLREAKFKAHQNYEETVQYGKGLLCGGEQHCTGRLREKCLRIE-KLLKRYSEMANDYEC------ 1848
Cdd:COG5022 1252 TPASMSNEKLlslLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRwKSATEVNYNSEELDDwcrefe 1331
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1849 LNRFSLDLEKETKTQKELSVT------IKTKLSLPYTQTK-EIEKLLTANQRCSMEfHRILKKLKYVLSYITRIKEEQHE 1921
Cdd:COG5022 1332 ISDVDEELEELIQAVKVLQLLkddlnkLDELLDACYSLNPaEIQNLKSRYDPADKE-NNLPKEILKKIEALLIKQELQLS 1410
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 1922 FINKFEM--AFIQ-------EVEKQNELQIKIQSLSQTSNIPSRDSQSKLS 1963
Cdd:COG5022 1411 LEGKDETevHLSEifseeksLISLDRNSIYKEEVLSSLSALLTKEKIALLD 1461
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
621-926 |
2.60e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.51 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 621 EDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEI 700
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 701 SKLSAlVDGKGLLSNLELEKRITDL-QKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREK 779
Cdd:pfam07888 118 DALLA-QRAAHEARIRELEEDIKTLtQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQE 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 780 LFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLhvelkhrqEEVLEESERVKQELSQKTQELAQKTA 859
Cdd:pfam07888 197 LRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSL--------QERLNASERKVEGLGEELSSMAAQRD 268
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 860 EGQEMLNQ--MEELREKLERRDSSLQSAEKEKNLLTEK--LQQTLEEVRALTQEKND-LKQLQESLQTERDQ 926
Cdd:pfam07888 269 RTQAELHQarLQAAQLTLQLADASLALREGRARWAQERetLQQSAEADKDRIEKLSAeLQRLEERLQEERME 340
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1240-1794 |
2.88e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1240 EEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILA---LTKKLEESQKEISCLTKERSD-LRRTQEALQVECAQLKDD 1315
Cdd:pfam05483 162 ETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAfeeLRVQAENARLEMHFKLKEDHEkIQHLEEEYKKEINDKEKQ 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1316 ARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELER---------KVQELCEKQEQL 1386
Cdd:pfam05483 242 VSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDikmslqrsmSTQKALEEDLQI 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1387 NIKE----TSEVQGKMSELDHIRA---LLLTKDSALQSVESDRLRLNKQ-LEESQEEIKILI-------KEREELRRAQE 1451
Cdd:pfam05483 322 ATKTicqlTEEKEAQMEELNKAKAahsFVVTEFEATTCSLEELLRTEQQrLEKNEDQLKIITmelqkksSELEEMTKFKN 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1452 ALHVEREQQQESIKEISTRL----------QELQDKEYEYLVMKSLNETQGNKCE-----------DLNQQLEAQKSSLE 1510
Cdd:pfam05483 402 NKEVELEELKKILAEDEKLLdekkqfekiaEELKGKEQELIFLLQAREKEIHDLEiqltaiktseeHYLKEVEDLKTELE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1511 KVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQM- 1589
Cdd:pfam05483 482 KEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKg 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1590 EQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIA 1669
Cdd:pfam05483 562 DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1670 HLDLKEHQETIERLMGSVAKRTE--EVSDMNM--ELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSK 1745
Cdd:pfam05483 642 ELELASAKQKFEEIIDNYQKEIEdkKISEEKLleEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIE 721
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755386 1746 IEMENLNLAQQIHQNLE--------EMKSISKERDDLKRMEEILRMEKDQLKDSLRE 1794
Cdd:pfam05483 722 ERDSELGLYKNKEQEQSsakaaleiELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
825-1390 |
3.25e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 825 LHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVR 904
Cdd:pfam05483 213 MHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKD 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 905 ALTQEKNDLK-QLQESLQTERdQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINML--KMKAT-------------- 967
Cdd:pfam05483 293 HLTKELEDIKmSLQRSMSTQK-ALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVvtEFEATtcsleellrteqqr 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 968 -EEMSDHLPIKGRE--GSSDEVEQKLDGIDEENLLAESAHTVVgsGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKE 1044
Cdd:pfam05483 372 lEKNEDQLKIITMElqKKSSELEEMTKFKNNKEVELEELKKIL--AEDEKLLDEKKQFEKIAEELKGKEQELIFLLQARE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1045 QLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAE-----IEEKLKEKNEFRNQALAL 1119
Cdd:pfam05483 450 KEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQeasdmTLELKKHQEDIINCKKQE 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1120 ERVETERLELAQKLHENYEKMESITKErndLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKEL 1199
Cdd:pfam05483 530 ERMLKQIENLEEKEMNLRDELESVREE---FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENK 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1200 RGSISE--KEAQASSTQDTGKTNPASQGETPVPREQELLPDA----EEARASAEKGSELEPVEEHSRTAHSLTTEGIEME 1273
Cdd:pfam05483 607 NKNIEElhQENKALKKKGSAENKQLNAYEIKVNKLELELASAkqkfEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1274 ILALTKKLEesqkeiscltkersdlRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQ 1353
Cdd:pfam05483 687 AVKLQKEID----------------KRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSN 750
|
570 580 590
....*....|....*....|....*....|....*..
gi 1958755386 1354 KEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKE 1390
Cdd:pfam05483 751 IKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
717-889 |
3.26e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.67 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 717 ELEKRITDLQKELNKEVEEKETLQKEVH-LLSELKSLPSEVETLRRELHEKSEELcvitTEREKLFSEMAH---KDSRIQ 792
Cdd:COG3883 27 ELQAELEAAQAELDALQAELEELNEEYNeLQAELEALQAEIDKLQAEIAEAEAEI----EERREELGERARalyRSGGSV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 793 GLLEEIGNTKD--DL-----AASQLSQRSSD--EECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQE 863
Cdd:COG3883 103 SYLDVLLGSESfsDFldrlsALSKIADADADllEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEA 182
|
170 180
....*....|....*....|....*.
gi 1958755386 864 MLNQMEELREKLERRDSSLQSAEKEK 889
Cdd:COG3883 183 LLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1277-1688 |
3.33e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1277 LTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLK---DDARRTLANHL-ETEEELSLAR---CCLKEQENKIDSLIV 1349
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDReqwERQRRELESRVaELKEELRQSRekhEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1350 SLSQKEAELSSVRVQLEVTTGELERKVQELCEKqeqlniketseVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQL 1429
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLTQR-----------VLERETELERMKERAKKAGAQRKEEEAERKQLQAKL 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1430 EESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylvmkslnetqgnkcedlNQQLEAQKSSL 1509
Cdd:pfam07888 181 QQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE------------------NEALLEELRSL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1510 EKVemqnVNLTQRLNETL-EEMKSVAKERDELRSVEERLTADRDQLKKSLEETitkNQELQEKGHQLSQVKADLRETmdq 1588
Cdd:pfam07888 243 QER----LNASERKVEGLgEELSSMAAQRDRTQAELHQARLQAAQLTLQLADA---SLALREGRARWAQERETLQQS--- 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1589 MEQLKEQLEAQNSTLESIEiekLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEasdlEKQEKLRI 1668
Cdd:pfam07888 313 AEADKDRIEKLSAELQRLE---ERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQ----KEKEQLQA 385
|
410 420
....*....|....*....|
gi 1958755386 1669 AHLDLKEHQETIERLMGSVA 1688
Cdd:pfam07888 386 EKQELLEYIRQLEQRLETVA 405
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
567-927 |
3.42e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.57 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 567 KHAEEYNQDLENELSSKVELLKEKEDQIKELQRYID-----AQKSETTK---TDLSYSSEATEDLKQAMRT-------LS 631
Cdd:COG3096 275 RHANERRELSERALELRRELFGARRQLAEEQYRLVEmarelEELSARESdleQDYQAASDHLNLVQTALRQqekieryQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 632 DLD--TVALDAK----RESAFLRSENLELKERINELSDSCK------------QMENGIQmYQRQLEAKKQVQADLE--- 690
Cdd:COG3096 355 DLEelTERLEEQeevvEEAAEQLAEAEARLEAAEEEVDSLKsqladyqqaldvQQTRAIQ-YQQAVQALEKARALCGlpd 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 691 ------KELQLAFQEisKLSALVDgkgllSNLELEKRITD-------------LQKELNKEVEEKETLQKEVHLL---SE 748
Cdd:COG3096 434 ltpenaEDYLAAFRA--KEQQATE-----EVLELEQKLSVadaarrqfekayeLVCKIAGEVERSQAWQTARELLrryRS 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 749 LKSLPSEVETLRRELHEKSEELcvittereklfsemaHKDSRIQGLLEEigntkddLAASQLSQRSSDEEcqaLKSLHVE 828
Cdd:COG3096 507 QQALAQRLQQLRAQLAELEQRL---------------RQQQNAERLLEE-------FCQRIGQQLDAAEE---LEELLAE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 829 LKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEmLNQME----ELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVR 904
Cdd:COG3096 562 LEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKE-LAARApawlAAQDALERLREQSGEALADSQEVTAAMQQLLERER 640
|
410 420
....*....|....*....|...
gi 1958755386 905 ALTQEKNDLKQLQESLQTERDQL 927
Cdd:COG3096 641 EATVERDELAARKQALESQIERL 663
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1425-1794 |
3.69e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.74 E-value: 3.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1425 LNKQLEESQEEIKILIKEREELRRAQEALHVE----REQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQ 1500
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERykrdREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1501 QLEAQKSSLEKVEMQNVnltQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKghqLSQVKA 1580
Cdd:pfam07888 112 ELSEEKDALLAQRAAHE---ARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAK---LQQTEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1581 DLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTlvakENDDLKimdEALREERDQLRESLRQTEA--S 1658
Cdd:pfam07888 186 ELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEA----ENEALL---EELRSLQERLNASERKVEGlgE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1659 DLEKQEKLRiAHLDLKEHQETIErlmgsVAKRTEEVSDMNMELERANTRLQEKVQELKASeLQLLKSKVEAGETKKQLKE 1738
Cdd:pfam07888 259 ELSSMAAQR-DRTQAELHQARLQ-----AAQLTLQLADASLALREGRARWAQERETLQQS-AEADKDRIEKLSAELQRLE 331
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1739 QGLALSKIEMENL--NLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLRE 1794
Cdd:pfam07888 332 ERLQEERMEREKLevELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQE 389
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1279-1739 |
3.74e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1279 KKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRtlANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAEL 1358
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEK--LEKLLQLLPLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1359 SSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEiKI 1438
Cdd:COG4717 159 RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE-LE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1439 LIKEREELRRAQEALHVEReqqqeSIKEISTRLQELQDKEYEYLVMKSLnetqgnkcedlnqQLEAQKSSLEKVEMQNVN 1518
Cdd:COG4717 238 AAALEERLKEARLLLLIAA-----ALLALLGLGGSLLSLILTIAGVLFL-------------VLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1519 LTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLReTMDQMEQLKEQLEA 1598
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-LEELEQEIAALLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1599 QNSTLESIEIEKLKLTQQLNENLKEMTLVAK--ENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEH 1676
Cdd:COG4717 379 AGVEDEEELRAALEQAEEYQELKEELEELEEqlEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAEL 458
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 1677 QETIERLMGSvakrtEEVSDMNMELERANTRLQEKVQELKAseLQLLKSKVEagETKKQLKEQ 1739
Cdd:COG4717 459 EAELEQLEED-----GELAELLQELEELKAELRELAEEWAA--LKLALELLE--EAREEYREE 512
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1427-1721 |
4.16e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1427 KQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK-----EYEYLVMKSLNETQGNKCEDLNQQ 1501
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1502 LEAQKSSLEKVEMQNVNLTQRLNetLEEMKSVAKERDELRSVEERLTADRDQLKKSLE-----ETITKNQE--------- 1567
Cdd:pfam17380 362 LERIRQEEIAMEISRMRELERLQ--MERQQKNERVRQELEAARKVKILEEERQRKIQQqkvemEQIRAEQEearqrevrr 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1568 -LQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNStlESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALReERD 1646
Cdd:pfam17380 440 lEEERAREMERVRLEEQERQQQVERLRQQEEERKR--KKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEER-KRK 516
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1647 QLRESLRQTEASDLEKQEKlRIAHLDLKEHQETIER--LMGSVAKRTEEVSDMN-MELERANTRlQEKVQELKASELQ 1721
Cdd:pfam17380 517 LLEKEMEERQKAIYEEERR-REAEEERRKQQEMEERrrIQEQMRKATEERSRLEaMEREREMMR-QIVESEKARAEYE 592
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
575-1167 |
4.81e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 48.58 E-value: 4.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 575 DLENELSSKVELLKEKEDQIKELQRYIDA-QKSETTKTdlSYSSEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLE 653
Cdd:pfam05557 31 ELEKKASALKRQLDRESDRNQELQKRIRLlEKREAEAE--EALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISC 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 654 LKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDgkgllSNLELEKRITDLQKELNKEV 733
Cdd:pfam05557 109 LKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQS-----SLAEAEQRIKELEFEIQSQE 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 734 EEKETLQKevhLLSELKSLPsEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRiqglLEEIGNTKDDLAASQLSQR 813
Cdd:pfam05557 184 QDSEIVKN---SKSELARIP-ELEKELERLREHNKHLNENIENKLLLKEEVEDLKRK----LEREEKYREEAATLELEKE 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 814 SSDEECQALKSLH----------VELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLErrdsSLQ 883
Cdd:pfam05557 256 KLEQELQSWVKLAqdtglnlrspEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIE----DLN 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 884 SAEKEKNLLTEKLQQtleEVRALTQEKNDLKQLQESLQTE------RDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQE 957
Cdd:pfam05557 332 KKLKRHKALVRRLQR---RVLLLTKERDGYRAILESYDKEltmsnySPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEE 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 958 TINMLKMKATEemsdhlpikgregssdeVEQKLDGIDEENLLAESAHTvvgsgeDHGETEEQRKIDSLLQENSRLQQTle 1037
Cdd:pfam05557 409 ELGGYKQQAQT-----------------LERELQALRQQESLADPSYS------KEEVDSLRRKLETLELERQRLREQ-- 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1038 siiaekeqlkmdlKENIEMSVENQEelrilrdelkRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNqal 1117
Cdd:pfam05557 464 -------------KNELEMELERRC----------LQGDYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLK--- 517
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1118 alERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEY 1167
Cdd:pfam05557 518 --RLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRLKEV 565
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1268-1462 |
4.92e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1268 EGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSL 1347
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1348 IVS-------------LSQKEAELSSVRVQ-LEVTTGELERKVQELCEKQEQLNIKETsEVQGKMSELDHIRALLLTKDS 1413
Cdd:COG4942 110 LRAlyrlgrqpplallLSPEDFLDAVRRLQyLKYLAPARREQAEELRADLAELAALRA-ELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 1414 ALQSVESDRL----RLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQE 1462
Cdd:COG4942 189 ALEALKAERQkllaRLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
880-1109 |
5.14e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 5.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 880 SSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETI 959
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 960 NMLKMK---ATEEMSDHLPIKGREGSSDEVEQKLDgideenllAESAHTVVGSGEDHGETEEQRK-----IDSLLQENSR 1031
Cdd:COG4942 93 AELRAEleaQKEELAELLRALYRLGRQPPLALLLS--------PEDFLDAVRRLQYLKYLAPARReqaeeLRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1032 LQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEK 1109
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
718-936 |
5.25e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 718 LEKRITDLQKELNKEVEEKETLQKEVHLLSelksLPSEVETLRRELHEkseelcvITTEREKLFSEMAHKDSRIQGLLEE 797
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVD----LSEEAKLLLQQLSE-------LESQLAEARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 798 IGNTKDdlaasQLSQRSSDEECQALKSLHVELKHRQEEVL----EESERVKQELSQKTQELAQKTAEGQEMLNQMEELRE 873
Cdd:COG3206 249 LGSGPD-----ALPELLQSPVIQQLRAQLAELEAELAELSarytPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELE 323
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958755386 874 KLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVN 936
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVG 386
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
354-954 |
6.79e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 354 DLKKQLEEVNTKTRAQEIEKDQLAQLLDEKDLLQKVQDEKIQNLKRMLVTSSSIALQQElEIKKKRRVTWCFGKMKDSNY 433
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE-RINRARKAAPLAAHIKAVTQ 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 434 VKEFKIPTNITTRTRKTSVTPLRENSLMKLGESALSWESEVFDNTL---EPLAEAEWSSATALLSEENLESELTSLNTQY 510
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLhsqEIHIRDAHEVATSIREISCQQHTLTQHIHTL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 511 NNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQ----ELQLMHEVSNLKNLIKHAEEYNQDLENELSSKVEL 586
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQlahaKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 587 ---LKEKEDQIKELQRYIDaQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAflrsenleLKERINELSD 663
Cdd:TIGR00618 465 aqsLKEREQQLQTKEQIHL-QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGP--------LTRRMQRGEQ 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 664 SCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNlELEKRITDLQKELNKEVEEKETLQKEV 743
Cdd:TIGR00618 536 TYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP-NLQNITVRLQDLTEKLSEAEDMLACEQ 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 744 HLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRI--------QGLLEEIGNTKDDLAASQLSQRSS 815
Cdd:TIGR00618 615 HALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREhalsirvlPKELLASRQLALQKMQSEKEQLTY 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 816 DEECQALKSlhvELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQ-----MEELREKLERRDSSLQSAEKEKN 890
Cdd:TIGR00618 695 WKEMLAQCQ---TLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQslkelMHQARTVLKARTEAHFNNNEEVT 771
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 891 LLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQ 954
Cdd:TIGR00618 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLS 835
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
653-1635 |
7.95e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.25 E-value: 7.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 653 ELKERINELSDSCKQMENgiqmyqrqlEAKKQVQADLEKELQLAFQEISKlsalvdGKGLLSNLELEKRITDLQKELNKE 732
Cdd:pfam01576 79 ELESRLEEEEERSQQLQN---------EKKKMQQHIQDLEEQLDEEEAAR------QKLQLEKVTTEAKIKKLEEDILLL 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 733 VEEKETLQKEVHLLSELKSlpsEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQ 812
Cdd:pfam01576 144 EDQNSKLSKERKLLEERIS---EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDL 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 813 RSSDEECQA-LKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKtaegQEMLNQMEELREKLERRDSSLQSAEKEKNL 891
Cdd:pfam01576 221 QEQIAELQAqIAELRAQLAKKEEELQAALARLEEETAQKNNALKKI----RELEAQISELQEDLESERAARNKAEKQRRD 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 892 LTEKLqqtlEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQllnALESLKQHQETinmlkmkATEEMS 971
Cdd:pfam01576 297 LGEEL----EALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEA---QLQEMRQKHTQ-------ALEELT 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 972 DHLPIKGREGSSdeVEQKLDGIDEENLLAESAHTVVGSGEDHGETEeQRKIDSLLQE-NSRLQQT----------LESII 1040
Cdd:pfam01576 363 EQLEQAKRNKAN--LEKAKQALESENAELQAELRTLQQAKQDSEHK-RKKLEGQLQElQARLSESerqraelaekLSKLQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1041 AEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEF-RNQALAL 1119
Cdd:pfam01576 440 SELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAkRNVERQL 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1120 ERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKEL 1199
Cdd:pfam01576 520 STLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNL 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1200 RGS--------ISEKEAQASSTQDTGKTNP-ASQGETPVPREQELLPDAEEARASAEKGSELEPVEEH----SRTAHSLT 1266
Cdd:pfam01576 600 EKKqkkfdqmlAEEKAISARYAEERDRAEAeAREKETRALSLARALEEALEAKEELERTNKQLRAEMEdlvsSKDDVGKN 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1267 TEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEElslARCCLKEQENKIDS 1346
Cdd:pfam01576 680 VHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEE---KRRQLVKQVRELEA 756
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1347 LIVSLSQKEAELSSVRVQLEVTTGELERKVqELCEKQEQLNIKETSEVQGKMSEL-----------DHIRALLLTKDSAL 1415
Cdd:pfam01576 757 ELEDERKQRAQAVAAKKKLELDLKELEAQI-DAANKGREEAVKQLKKLQAQMKDLqreleearasrDEILAQSKESEKKL 835
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1416 QSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK-EYEYLVMKSLNETQGN- 1493
Cdd:pfam01576 836 KNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEElEEEQSNTELLNDRLRKs 915
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1494 --KCEDLNQQLEAQKSSLEKVE-------MQNVNLTQRLNETLEEMKS-----VAKERDELRSVEERLTA---DRDQLKK 1556
Cdd:pfam01576 916 tlQVEQLTTELAAERSTSQKSEsarqqleRQNKELKAKLQEMEGTVKSkfkssIAALEAKIAQLEEQLEQesrERQAANK 995
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1557 SLEETITKNQEL----QEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKEND 1632
Cdd:pfam01576 996 LVRRTEKKLKEVllqvEDERRHADQYKDQAEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDATESNESMNREVS 1075
|
...
gi 1958755386 1633 DLK 1635
Cdd:pfam01576 1076 TLK 1078
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1270-1651 |
8.24e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 8.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1270 IEMEILALTKKLEESQKEIscltKERSDLRRTQEALQVECAQLKDDARRTLANH-LETEEELSLARCCLKEQENKIDSLI 1348
Cdd:COG4717 137 LEAELAELPERLEELEERL----EELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1349 VSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSV---------- 1418
Cdd:COG4717 213 EELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVlgllallfll 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1419 -ESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylVMKSLNETQGNKCED 1497
Cdd:COG4717 293 lAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE--AEELEEELQLEELEQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1498 LNQQL--EAQKSSLEKVEmQNVNLTQRLNETLEEMKSVAKERDELRSVEERL--TADRDQLKKSLEETITKNQELQEKGH 1573
Cdd:COG4717 371 EIAALlaEAGVEDEEELR-AALEQAEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELE 449
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1574 QLSQVKADLREtmdQMEQLKEQleaqnSTLESIEIEKLKLTQQLNEnlkemtlVAKENDDLKIMDEALREERDQLRES 1651
Cdd:COG4717 450 ELREELAELEA---ELEQLEED-----GELAELLQELEELKAELRE-------LAEEWAALKLALELLEEAREEYREE 512
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
832-1121 |
8.29e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.59 E-value: 8.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 832 RQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKN 911
Cdd:COG4372 39 ELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 912 DLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVEQKLD 991
Cdd:COG4372 119 ELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 992 GIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDEL 1071
Cdd:COG4372 199 EEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEEL 278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1072 KRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALER 1121
Cdd:COG4372 279 EIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKL 328
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
497-1108 |
9.81e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 9.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEkneleefefleqreEKDQELQLMHEVSNLKNLIKHAEEYNQDL 576
Cdd:TIGR04523 57 KNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKK--------------NKDKINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 577 ENELSSKVELLKEKEDQIKE----------LQRYIDAQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESAF 646
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKflteikkkekELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 647 L------RSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGLLSNlELEK 720
Cdd:TIGR04523 203 LsnlkkkIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNK 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 721 RITDLQKELNKEVEEKETLQKEV------HLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGL 794
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLNNQKeqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 795 LEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREK 874
Cdd:TIGR04523 362 QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 875 ---LERRDSSLQSAEKEKNLLTEKLQQTLEEvraLTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALES 951
Cdd:TIGR04523 442 ikdLTNQDSVKELIIKNLDNTRESLETQLKV---LSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKK 518
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 952 LKQHQETINMLKMKATEEMSDhlpIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETE-EQRKIDSLLQENS 1030
Cdd:TIGR04523 519 ISSLKEKIEKLESEKKEKESK---ISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKkKQEEKQELIDQKE 595
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1031 RLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVtekSEELSRAHERLAEIEEKLKE 1108
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQI---KETIKEIRNKWPEIIKKIKE 670
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1042-1251 |
1.02e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1042 EKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNE-FRNQALALE 1120
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREeLGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1121 RVET------------------ERLELAQKLHE-NYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQ 1181
Cdd:COG3883 97 RSGGsvsyldvllgsesfsdflDRLSALSKIADaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1182 LNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSE 1251
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASA 246
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1538-1742 |
1.06e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1538 DELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESiEIEKLK----- 1612
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE-RREELGerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1613 -LTQQLNENLKEMTLVAKENDDL--------KIM--DEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIE 1681
Cdd:COG3883 95 lYRSGGSVSYLDVLLGSESFSDFldrlsalsKIAdaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 1682 RLmgsVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLA 1742
Cdd:COG3883 175 AQ---QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1419-1764 |
1.23e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1419 ESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDL 1498
Cdd:pfam07888 79 ESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKER 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1499 NQQLEAQKsslEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSveerltadrdqlkkSLEETITKNQELQEKGHQLSQV 1578
Cdd:pfam07888 159 AKKAGAQR---KEEEAERKQLQAKLQQTEEELRSLSKEFQELRN--------------SLAQRDTQVLQLQDTITTLTQK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1579 KADLRETMDQMEQLKEQLEAQNstlesieiEKLKLTQQLNENLKEmtlvakendDLkimdEALREERDQLRESLRQTEAS 1658
Cdd:pfam07888 222 LTTAHRKEAENEALLEELRSLQ--------ERLNASERKVEGLGE---------EL----SSMAAQRDRTQAELHQARLQ 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1659 DLEKQEKLRIAHLDLKEHQETI----ERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSK----VEAG 1730
Cdd:pfam07888 281 AAQLTLQLADASLALREGRARWaqerETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKdcnrVQLS 360
|
330 340 350
....*....|....*....|....*....|....
gi 1958755386 1731 ETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEM 1764
Cdd:pfam07888 361 ESRRELQELKASLRVAQKEKEQLQAEKQELLEYI 394
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
719-929 |
1.25e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 719 EKRITDLQKELNKEVEEKETLQKEvhllseLKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEI 798
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAE------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 799 GntkDDLAASQLSQRSSDEECQALKSLHVE-----------LKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQ 867
Cdd:COG3883 89 G---ERARALYRSGGSVSYLDVLLGSESFSdfldrlsalskIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 868 MEELREKLErrdSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRS 929
Cdd:COG3883 166 LEAAKAELE---AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1027-1216 |
1.28e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1027 QENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKL 1106
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1107 KE-KNEFRNQALALERVETE-----------------RLELAQKLHEN-YEKMESITKERNDLKELQESFEIEKKQLKEY 1167
Cdd:COG4942 100 EAqKEELAELLRALYRLGRQpplalllspedfldavrRLQYLKYLAPArREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958755386 1168 AREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDT 1216
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1496-1749 |
1.29e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 46.44 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1496 EDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRsveERLTADRDQLKKSLEETITKNQELQEKGHQL 1575
Cdd:COG1340 4 DELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELN---AQVKELREEAQELREKRDELNEKVKELKEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1576 SQVKADLRETMDQMEQLKEQLEAQNSTLESI-----EIEKLKLTQQlNENL---KEMTLVAKENDDLKIMDEAlrEERDQ 1647
Cdd:COG1340 81 DELNEKLNELREELDELRKELAELNKAGGSIdklrkEIERLEWRQQ-TEVLspeEEKELVEKIKELEKELEKA--KKALE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1648 LRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKV 1727
Cdd:COG1340 158 KNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQK 237
|
250 260
....*....|....*....|..
gi 1958755386 1728 EAGETKKQLKEQGLALSKIEME 1749
Cdd:COG1340 238 ELRELRKELKKLRKKQRALKRE 259
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1337-1536 |
1.30e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1337 LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQL-----NIKET-SEVQGKMSEL-DHIRAL-- 1407
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdklqaEIAEAeAEIEERREELgERARALyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1408 ---LLTKDSALQSVES-----DRLRLNKQLEESQ-EEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKE 1478
Cdd:COG3883 98 sggSVSYLDVLLGSESfsdflDRLSALSKIADADaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1479 YEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKE 1536
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
562-960 |
1.41e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 562 LKNLIKHAEEYNQdLENELSSKVELLKEKEDQIKELQRYIdaqksettktdlsyssEATEDLKQamrtlsdldtvALDAK 641
Cdd:COG4717 80 LKEAEEKEEEYAE-LQEELEELEEELEELEAELEELREEL----------------EKLEKLLQ-----------LLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 642 RESAFLRSENLELKERINELSDSCKQMENgiqmYQRQLEAKKQVQADLEKELQLAFQEISkLSALVDGKGLLSNLE-LEK 720
Cdd:COG4717 132 QELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLS-LATEEELQDLAEELEeLQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 721 RITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEE--LCVITTEREKLFSEMAHKDSRIQGLLEEI 798
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaaLLALLGLGGSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 799 GNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERR 878
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 879 dsslQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVN-MNIDTQEQLLNALESLKQHQE 957
Cdd:COG4717 367 ----ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEElLEALDEEELEEELEELEEELE 442
|
...
gi 1958755386 958 TIN 960
Cdd:COG4717 443 ELE 445
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1341-1666 |
1.50e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.43 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1341 ENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKEtSEVQGKMSELDHIRALLLTKDSALQSVES 1420
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLE-EELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1421 DRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK--EYEYLVMKSLNETQGNKCEDL 1498
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEElaALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1499 NQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQV 1578
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1579 KADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEAS 1658
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLV 348
|
....*...
gi 1958755386 1659 DLEKQEKL 1666
Cdd:COG4372 349 GLLDNDVL 356
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1332-1586 |
1.55e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1332 LARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETsevqgkmsELDHIRALLLTK 1411
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR--------RIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1412 DSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEReqqQESIKEISTRLQelqdkeyeylVMKSLNETQ 1491
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLS---PEDFLDAVRRLQ----------YLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1492 GNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEK 1571
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|....*
gi 1958755386 1572 GHQLSQVKADLRETM 1586
Cdd:COG4942 229 IARLEAEAAAAAERT 243
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1236-1621 |
1.63e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1236 LPDAEEARASAEKGSELEPVEEHSRTAHSLTTEgiemeILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDD 1315
Cdd:PRK11281 35 LPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQ-----TLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1316 ARRTLANHLETeeeLSLArcclkEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCEKQEQL----NIKET 1391
Cdd:PRK11281 110 NDEETRETLST---LSLR-----QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLqqirNLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1392 SEVQGKMSELDHiRALLLTKDSALQSvesdRLRLNKQLEESQEEIKILIKEREELRraqeALHVEREQQQesikeistrL 1471
Cdd:PRK11281 182 GKVGGKALRPSQ-RVLLQAEQALLNA----QNDLQRKSLEGNTQLQDLLQKQRDYL----TARIQRLEHQ---------L 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1472 QELQDKEYEylvmKSLNETQGNKCEDLNQQL--EAQKSSLEKVEMQ-NVNLTQRLNETLEEMKSVAKERDELRSVEERLT 1548
Cdd:PRK11281 244 QLLQEAINS----KRLTLSEKTVQEAQSQDEaaRIQANPLVAQELEiNLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1549 -ADR---DQ---LKKSL---------EETITKNQELQEKGHQLsqvkADLR-------ETMDQMEQLK---EQLEAQNS- 1601
Cdd:PRK11281 320 qSERnikEQisvLKGSLllsrilyqqQQALPSADLIEGLADRI----ADLRleqfeinQQRDALFQPDayiDKLEAGHKs 395
|
410 420
....*....|....*....|....*...
gi 1958755386 1602 --------TLESIEIEKLKLTQQLNENL 1621
Cdd:PRK11281 396 evtdevrdALLQLLDERRELLDQLNKQL 423
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
874-1095 |
1.67e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 874 KLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSDIqDTVNMNIDTQEQLL-NALESL 952
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-AEAEAEIEERREELgERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 953 KQHQETINMLKM----KATEEMSDHLPIKGREGSSDevEQKLDGIDEENLLAESAHTVVgsgedhgeTEEQRKIDSLLQE 1028
Cdd:COG3883 96 YRSGGSVSYLDVllgsESFSDFLDRLSALSKIADAD--ADLLEELKADKAELEAKKAEL--------EAKLAELEALKAE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755386 1029 NSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRA 1095
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1430-1788 |
1.77e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1430 EESQEEIKILIKEREELRRAQEALHVEREQQQESIKEistrLQELQDKEyeylvmkSLNETQGNKCED-LNQQLEAQKSS 1508
Cdd:COG3096 278 NERRELSERALELRRELFGARRQLAEEQYRLVEMARE----LEELSARE-------SDLEQDYQAASDhLNLVQTALRQQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1509 lEKVEMQNVNLTQrLNETLEEMKSVAKERDELRS-VEERLTADRDQLK----------KSLEETITKNQELQEKGHQLSQ 1577
Cdd:COG3096 347 -EKIERYQEDLEE-LTERLEEQEEVVEEAAEQLAeAEARLEAAEEEVDslksqladyqQALDVQQTRAIQYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1578 VKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQL-------NENLKEMTLVAKENDDLKIMD------EALREE 1644
Cdd:COG3096 425 ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLsvadaarRQFEKAYELVCKIAGEVERSQawqtarELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1645 RDQ---------LRESL--------RQTEASDLEKQEKLRI-----AHLDLKEHQETIERLMGSVAKRTEEVSDMNMELE 1702
Cdd:COG3096 505 RSQqalaqrlqqLRAQLaeleqrlrQQQNAERLLEEFCQRIgqqldAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1703 RANTRLQEKVQELKASELQLLKskveAGETKKQLKEQ-GLALSKIEMenlnLAQQIHQNLEEMKSISKERDDLKRMEEIL 1781
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLA----AQDALERLREQsGEALADSQE----VTAAMQQLLEREREATVERDELAARKQAL 656
|
....*..
gi 1958755386 1782 RMEKDQL 1788
Cdd:COG3096 657 ESQIERL 663
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1574-1770 |
1.90e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1574 QLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKimdEALREERDQLRESLR 1653
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---AEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1654 Q--------------TEASDLEkqeklriahlDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASE 1719
Cdd:COG3883 94 AlyrsggsvsyldvlLGSESFS----------DFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALK 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 1720 LQLLKSKVEAgetKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKE 1770
Cdd:COG3883 164 AELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
822-1489 |
2.07e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 822 LKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMlnqMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLE 901
Cdd:pfam12128 260 LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEK---RDELNGELSAADAAVAKDRSELEALEDQHGAFLD 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 902 ---EVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQ-----EQLLNALESLKQHQETINMLKMKATEEMSDH 973
Cdd:pfam12128 337 adiETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRrskikEQNNRDIAGIKDKLAKIREARDRQLAVAEDD 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 974 LPIKGREGSSDEVEQKLDGIDEENLLAESAhtvvgsgedhgeteeqrkidsllqenSRLQQTLESIIAEKEqLKMDLKEN 1053
Cdd:pfam12128 417 LQALESELREQLEAGKLEFNEEEYRLKSRL--------------------------GELKLRLNQATATPE-LLLQLENF 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1054 IEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNE------------FRNQAL---- 1117
Cdd:pfam12128 470 DERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELqlfpqagtllhfLRKEAPdweq 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1118 ALERVETERLELAQKLHEnyEKMESITKERNDLKELqeSFEIEKKQLKEYA---REMESAGLQTKEQLNIAHANLKEYQE 1194
Cdd:pfam12128 550 SIGKVISPELLHRTDLDP--EVWDGSVGGELNLYGV--KLDLKRIDVPEWAaseEELRERLDKAEEALQSAREKQAAAEE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1195 IIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLpDAEEARASAEKGSElepvEEHSRTAHSLTTEGIEMEI 1274
Cdd:pfam12128 626 QLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKD-KKNKALAERKDSAN----ERLNSLEAQLKQLDKKHQA 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1275 LaltkkLEESQKEISCLTKERSDLRR-TQEALQVECAQLKD--DARRTLA----NHLETEEELSLARCCLKEQ-----EN 1342
Cdd:pfam12128 701 W-----LEEQKEQKREARTEKQAYWQvVEGALDAQLALLKAaiAARRSGAkaelKALETWYKRDLASLGVDPDviaklKR 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1343 KIDSLIVSLSQKEAELSSVRvqlevttgELERKVQELCEKQEQLNIKETSEVQGKMSEL-DHIRALLLTKDSALQSVESD 1421
Cdd:pfam12128 776 EIRTLERKIERIAVRRQEVL--------RYFDWYQETWLQRRPRLATQLSNIERAISELqQQLARLIADTKLRRAKLEME 847
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1422 RLRLNKQLEESQEEikiLIKEREELRR-AQEALHVEREQQQESIKEISTRLQELQDK-EYEYLVMKSLNE 1489
Cdd:pfam12128 848 RKASEKQQVRLSEN---LRGLRCEMSKlATLKEDANSEQAQGSIGERLAQLEDLKLKrDYLSESVKKYVE 914
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
789-996 |
2.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 789 SRIQGLLEEIGNTKDDLAASQLSQRSSDEEcqaLKSLHVELKHRQEEVleesERVKQELSQKTQELAQKTAEGQEMLNQM 868
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQ---LAALERRIAALARRI----RALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 869 EELREKLERRDSSLQS------------------AEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRSD 930
Cdd:COG4942 100 EAQKEELAELLRALYRlgrqpplalllspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755386 931 IQDtvnmnidtQEQLLNALESLKQHQETinMLKMKATEEMSDHLPIKGREGSSDEVEQKLDGIDEE 996
Cdd:COG4942 180 LAE--------LEEERAALEALKAERQK--LLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1544-1743 |
2.31e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1544 EERLTADRDQL----KKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESI--EIEKLKLTQQL 1617
Cdd:COG4717 48 LERLEKEADELfkpqGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELreELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1618 NENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDM 1697
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958755386 1698 NMELERANTRLQEKVQELKAsELQLLKSKVEAGETKKQLKEQGLAL 1743
Cdd:COG4717 208 LAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLL 252
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
497-780 |
2.47e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 497 ENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQlmHEVSNLKNLIKHAEEYNQDL 576
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ--AELSKLEEEVSRIEARLREI 817
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 577 ENELSSKVELLKEKEDQIKELQRYIDAQKSETTktdlsySSEATEDLKQAmrTLSDLDTVALDAKRESAFLRSENLELKE 656
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK------SIEKEIENLNG--KKEELEEELEELEAALRDLESRLGDLKK 889
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 657 RINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVdgKGLLSNLELEKRITDLQKELNKEVEEK 736
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK--GEDEEIPEEELSLEDVQAELQRVEEEI 967
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1958755386 737 ETLQkEVHLLSelkslPSEVETLRRELHEKSEELCVITTEREKL 780
Cdd:TIGR02169 968 RALE-PVNMLA-----IQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1371-2170 |
2.50e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1371 ELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQ 1450
Cdd:pfam02463 202 LKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEK 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1451 EALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEM 1530
Cdd:pfam02463 282 KLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1531 KSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEK 1610
Cdd:pfam02463 362 EKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIEL 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1611 LKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLR-QTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAK 1689
Cdd:pfam02463 442 KQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEqLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1690 RTEEVSDMNMEL--------ERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNL 1761
Cdd:pfam02463 522 GRIISAHGRLGDlgvavenyKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDP 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1762 EEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQYGKGLLCGGEQhctgrlrEKCLRIEKLLKRYSE 1841
Cdd:pfam02463 602 ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA-------EKSEVKASLSELTKE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1842 MANDYECLNRFSLDLEKETKTQKELSVTIKTKLSLPYTQTKEIEKLLTANQRCSMEFHRILKKLKYVLSYITRIKEEQHE 1921
Cdd:pfam02463 675 LLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1922 FINKFEMAFIQEVEKQNELQIKIQSLSQTSNIPSRDSQSKLSQEMDLHIEEILKDFSENDFLTIKTEVKQVLSNRKEITE 2001
Cdd:pfam02463 755 SRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 2002 FLEKWLNTHFDTENLKSSIQKENksiglvNNFYHSKITAMVNESTEFEERCAARAKDLERHLKALTETTEQLSKV--YQS 2079
Cdd:pfam02463 835 LEELALELKEEQKLEKLAEEELE------RLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEeeSQK 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 2080 LTVSWSIVRPSTQDSKDPRVALEAEQLTSKDKNALGAMPYKEEIEDLKMQLVKIDLEKKAKAKEFEKEMLAIKATVEHQE 2159
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEE 988
|
810
....*....|.
gi 1958755386 2160 EVIRLLRENLR 2170
Cdd:pfam02463 989 RYNKDELEKER 999
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
570-1603 |
2.50e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 570 EEYNQDLENELSSKVELLKEKEDQIKELQRyiDAQKSETTKTDLSYSSEATEDLkqamrtlsdldtvALDAKRESAFLRS 649
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEK--KHQQLCEEKNALQEQLQAETEL-------------CAEAEEMRARLAA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 650 ENLELKERINELSDSCKQMENGIQmyQRQLEAKKQVQADLEKELQLAFQEISKlsalvdGKGLLSNLELEKRITDLQKEL 729
Cdd:pfam01576 69 RKQELEEILHELESRLEEEEERSQ--QLQNEKKKMQQHIQDLEEQLDEEEAAR------QKLQLEKVTTEAKIKKLEEDI 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 730 NKEVEEKETLQKEVHLLSELKslpSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQ 809
Cdd:pfam01576 141 LLLEDQNSKLSKERKLLEERI---SEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGES 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 810 LSQRSSDEECQA-LKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKtaegQEMLNQMEELREKLERRDSSLQSAEKE 888
Cdd:pfam01576 218 TDLQEQIAELQAqIAELRAQLAKKEEELQAALARLEEETAQKNNALKKI----RELEAQISELQEDLESERAARNKAEKQ 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 889 KNLLTEKlqqtLEEVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQllnALESLKQHQETinmlkmkATE 968
Cdd:pfam01576 294 RRDLGEE----LEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEA---QLQEMRQKHTQ-------ALE 359
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 969 EMSDHLPIKGREGSSdeVEQKLDGIDEENLLAESAHTVVGSGEDHGETeEQRKIDSLLQE-NSRLQQT----------LE 1037
Cdd:pfam01576 360 ELTEQLEQAKRNKAN--LEKAKQALESENAELQAELRTLQQAKQDSEH-KRKKLEGQLQElQARLSESerqraelaekLS 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1038 SIIAEKEQLKMDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEF-RNQA 1116
Cdd:pfam01576 437 KLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAkRNVE 516
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1117 LALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEII 1196
Cdd:pfam01576 517 RQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLV 596
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1197 KELRGS--------ISEKEAQASSTQDTGKTNP-ASQGETPVPREQELLPDAEEARASAEKGSELEPVEEH----SRTAH 1263
Cdd:pfam01576 597 SNLEKKqkkfdqmlAEEKAISARYAEERDRAEAeAREKETRALSLARALEEALEAKEELERTNKQLRAEMEdlvsSKDDV 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1264 SLTTEGIEMEILALTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEElslARCCLKEQENK 1343
Cdd:pfam01576 677 GKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEE---KRRQLVKQVRE 753
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1344 IDSLIVSLSQKEAELSSVRVQLEVTTGELERKVqELCEKQEQLNIKETSEVQGKMSEL-----------DHIRALLLTKD 1412
Cdd:pfam01576 754 LEAELEDERKQRAQAVAAKKKLELDLKELEAQI-DAANKGREEAVKQLKKLQAQMKDLqreleearasrDEILAQSKESE 832
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1413 SALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDK-EYEYLVMKSLNETQ 1491
Cdd:pfam01576 833 KKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEElEEEQSNTELLNDRL 912
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1492 GN---KCEDLNQQLEAQKSSLEKV-------EMQNVNLTQRLNETLEEMKSvaKERDELRSVEERLTADRDQLKKSLEET 1561
Cdd:pfam01576 913 RKstlQVEQLTTELAAERSTSQKSesarqqlERQNKELKAKLQEMEGTVKS--KFKSSIAALEAKIAQLEEQLEQESRER 990
|
1050 1060 1070 1080
....*....|....*....|....*....|....*....|..
gi 1958755386 1562 ITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTL 1603
Cdd:pfam01576 991 QAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRM 1032
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1303-1539 |
2.51e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 46.17 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1303 EALQVecAQLKDDARRTLANHLETEEELSLARCC-LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQELCE 1381
Cdd:pfam05667 304 EKLQF--TNEAPAATSSPPTKVETEEELQQQREEeLEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEE 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1382 KQEQLNIKETS-----EVQGKMSELDhirallltkdSALQSVESDRLRLNKQLEESQEEikiLIKEREELRRAQEALHVE 1456
Cdd:pfam05667 382 LEKQYKVKKKTldllpDAEENIAKLQ----------ALVDASAQRLVELAGQWEKHRVP---LIEEYRALKEAKSNKEDE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1457 REQQQESIKEISTRLQELQDKeyeyLVMKslnetqgnkcEDLNQQLEAQKSSLEKvEMQNVNLTQRLNETleeMKSVAKE 1536
Cdd:pfam05667 449 SQRKLEEIKELREKIKEVAEE----AKQK----------EELYKQLVAEYERLPK-DVSRSAYTRRILEI---VKNIKKQ 510
|
...
gi 1958755386 1537 RDE 1539
Cdd:pfam05667 511 KEE 513
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
820-994 |
2.78e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 45.86 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 820 QALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQT 899
Cdd:PRK12705 52 AALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 900 LEEVRALTQE-------KNDLKQLQESLQTERDQLRSDIQDTVnmNIDTQEQLLNALEslKQHQETINMLKMKATEEMSD 972
Cdd:PRK12705 132 LYRVAGLTPEqarklllKLLDAELEEEKAQRVKKIEEEADLEA--ERKAQNILAQAMQ--RIASETASDLSVSVVPIPSD 207
|
170 180
....*....|....*....|....
gi 1958755386 973 HL--PIKGREGSSDEVEQKLDGID 994
Cdd:PRK12705 208 AMkgRIIGREGRNIRAFEGLTGVD 231
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1388-1805 |
3.19e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1388 IKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKE------------------REELRRA 1449
Cdd:TIGR04523 29 NKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQikdlndklkknkdkinklNSDLSKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1450 QEALHVEREQQQESIKEISTRLQELQDKE-------YEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQ- 1521
Cdd:TIGR04523 109 NSEIKNDKEQKNKLEVELNKLEKQKKENKknidkflTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKn 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1522 ---------RLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEEtitKNQELQEKGHQLSQVKADLRETMDQMEQL 1592
Cdd:TIGR04523 189 idkiknkllKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEK---KQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1593 KEQLEAQNSTLESIEIEKLKLTQQLNEnlkemtlvakenddLKIMDEALREERDQLRESLRQTEASDleKQEKLRIAHLD 1672
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQ--------------LKSEISDLNNQKEQDWNKELKSELKN--QEKKLEEIQNQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1673 LKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLN 1752
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ 409
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1958755386 1753 LAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQL--KDSLREAKFKAHQNYEE 1805
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLtnQDSVKELIIKNLDNTRE 464
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1529-1801 |
3.31e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1529 EMKSVAKERDELRSVEERLTADRDQLKKSLEET-ITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIE 1607
Cdd:pfam12128 259 RLSHLHFGYKSDETLIASRQEERQETSAELNQLlRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1608 IEKLKLTQ-QLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERlmgS 1686
Cdd:pfam12128 339 IETAAADQeQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAE---D 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1687 VAKRTEevSDMNMELERANTRLQEKVQELK--ASELQLLKSKVEAGETKKQLKEQGLALskiemenlnlaqqIHQNLEEM 1764
Cdd:pfam12128 416 DLQALE--SELREQLEAGKLEFNEEEYRLKsrLGELKLRLNQATATPELLLQLENFDER-------------IERAREEQ 480
|
250 260 270
....*....|....*....|....*....|....*..
gi 1958755386 1765 KSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQ 1801
Cdd:pfam12128 481 EAANAEVERLQSELRQARKRRDQASEALRQASRRLEE 517
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1558-1716 |
3.38e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.34 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1558 LEETIT-KNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLKi 1636
Cdd:PRK09039 44 LSREISgKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1637 mdEALREERDQLRESLRQTEasDLEKQeklrIAHLdlKEHQETIERLMGSVAKRTEE----VSDMNMELeraNTRLQEKV 1712
Cdd:PRK09039 123 --QELDSEKQVSARALAQVE--LLNQQ----IAAL--RRQLAALEAALDASEKRDREsqakIADLGRRL---NVALAQRV 189
|
....
gi 1958755386 1713 QELK 1716
Cdd:PRK09039 190 QELN 193
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
776-943 |
3.45e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 45.13 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 776 EREKLFSEMAHKDSRIQGLLEEIGNTKDDLaasQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELA 855
Cdd:pfam09787 55 ERDLLREEIQKLRGQIQQLRTELQELEAQQ---QEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 856 QKTAEGQEMLNQMEELREKLE-----RRDSSLQSAEKEKNL--LTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLR 928
Cdd:pfam09787 132 RSKATLQSRIKDREAEIEKLRnqltsKSQSSSSQSELENRLhqLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQ 211
|
170
....*....|....*
gi 1958755386 929 SDIQDTVNMNIDTQE 943
Cdd:pfam09787 212 GEGSNGTSINMEGIS 226
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
676-963 |
4.13e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.67 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 676 QRQLEA-KKQVQADLEKELQLaFQEISKLSAlvdgkgllSNLELEKRITDLQKELNKEVEEKETLQKEV----------- 743
Cdd:PRK11281 51 QKLLEAeDKLVQQDLEQTLAL-LDKIDRQKE--------ETEQLKQQLAQAPAKLRQAQAELEALKDDNdeetretlstl 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 744 ---HLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQglleEIGNTKDDLAASQLSQRSSdeecq 820
Cdd:PRK11281 122 slrQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQ----QIRNLLKGGKVGGKALRPS----- 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 821 alkslhvelkhrqeevleeservkqelsQKTQELAQktaegQEMLNQMEELREKLERRDSSLQS-AEKEKNLLTEKLQQT 899
Cdd:PRK11281 193 ----------------------------QRVLLQAE-----QALLNAQNDLQRKSLEGNTQLQDlLQKQRDYLTARIQRL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 900 LEEVRALTQEKNDlKQLQESLQTERDQLRSD-------------------------IQDTVNMNIDTQEQLL--NALESL 952
Cdd:PRK11281 240 EHQLQLLQEAINS-KRLTLSEKTVQEAQSQDeaariqanplvaqeleinlqlsqrlLKATEKLNTLTQQNLRvkNWLDRL 318
|
330
....*....|....*
gi 1958755386 953 KQHQ----ETINMLK 963
Cdd:PRK11281 319 TQSErnikEQISVLK 333
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1231-1496 |
4.21e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1231 REQELLPDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEILA--------LTKKLEESQKEISCLTKERSDLRRTQ 1302
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAaiyaeqerMAMERERELERIRQEERKRELERIRQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1303 EALQVECAQLKDDARRTLANHLETE---EELSLARCC--------LKEQENKIDSLIVSLSQKEAELSSVRVQLEVTTGE 1371
Cdd:pfam17380 368 EEIAMEISRMRELERLQMERQQKNErvrQELEAARKVkileeerqRKIQQQKVEMEQIRAEQEEARQREVRRLEEERARE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1372 LERKVQELCEKQEQLNIKETSEV------------QGKMSELDHIRALLLTKD-----SALQSVESDRLRLNKQLEESQE 1434
Cdd:pfam17380 448 MERVRLEEQERQQQVERLRQQEEerkrkklelekeKRDRKRAEEQRRKILEKEleerkQAMIEEERKRKLLEKEMEERQK 527
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1435 EIKILIKER--EELRRAQEALHvEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCE 1496
Cdd:pfam17380 528 AIYEEERRReaEEERRKQQEME-ERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1498-1735 |
4.53e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 4.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1498 LNQQLEAQKSSLEKVemqnvnlTQRLNETLEEMksvakeRDELRSVEERLTA--------DRDQLKKSLEETITKNQElq 1569
Cdd:COG3206 162 LEQNLELRREEARKA-------LEFLEEQLPEL------RKELEEAEAALEEfrqknglvDLSEEAKLLLQQLSELES-- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1570 ekghQLSQVKADLRETMDQMEQLKEQLE---------AQNSTLESIEIEKLKLTQQLNENLKEMTlvaKENDDLKimdeA 1640
Cdd:COG3206 227 ----QLAEARAELAEAEARLAALRAQLGsgpdalpelLQSPVIQQLRAQLAELEAELAELSARYT---PNHPDVI----A 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1641 LREERDQLRESLRQteasdlEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSDMNmELERANTRLQEKVQELKASEL 1720
Cdd:COG3206 296 LRAQIAALRAQLQQ------EAQRILASLEAELEALQAREASLQAQLAQLEARLAELP-ELEAELRRLEREVEVARELYE 368
|
250
....*....|....*
gi 1958755386 1721 QLLKSKVEAGETKKQ 1735
Cdd:COG3206 369 SLLQRLEEARLAEAL 383
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
832-1262 |
4.76e-04 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 45.28 E-value: 4.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 832 RQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSA----------EKEKNLLTEKLQQTLE 901
Cdd:COG5278 73 GDESFLEPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELEQVialrraggleAALALVRSGEGKALMD 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 902 EVRALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREG 981
Cdd:COG5278 153 EIRARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAAL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 982 SSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQ 1061
Cdd:COG5278 233 ELLAALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1062 EELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETERLELAQKLHENYEKME 1141
Cdd:COG5278 313 AAAAAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEV 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1142 SITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNP 1221
Cdd:COG5278 393 LAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVA 472
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1958755386 1222 ASQGETPVPREQELLPDAEEARASAEKGSELEPVEEHSRTA 1262
Cdd:COG5278 473 ALAALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAA 513
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
497-1173 |
4.80e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 497 ENLESELTSLNTQYNNLVLDYEQLRrenEDLKLKLKEKNELEEFEFLEQREEKDqeLQLMHEVSNLKNLIKHAEEYNQDL 576
Cdd:pfam12128 357 ENLEERLKALTGKHQDVTAKYNRRR---SKIKEQNNRDIAGIKDKLAKIREARD--RQLAVAEDDLQALESELREQLEAG 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 577 ENELSSKVELLKEKEDQIKELQRyiDAQKSETTKTDLSYSSEATEdlkQAMRTLSDLDTVALDAKRESAFLRSENLELKE 656
Cdd:pfam12128 432 KLEFNEEEYRLKSRLGELKLRLN--QATATPELLLQLENFDERIE---RAREEQEAANAEVERLQSELRQARKRRDQASE 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 657 RINELSDSCKQMENGIQMYQRQLEAKK-QVQADLEKELQLAFQEISKLSALvdgkgllsnlELEKRiTDLQKELNKEVEE 735
Cdd:pfam12128 507 ALRQASRRLEERQSALDELELQLFPQAgTLLHFLRKEAPDWEQSIGKVISP----------ELLHR-TDLDPEVWDGSVG 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 736 KETLQKEVHLLSELKSLPSEV---ETLRRELHEKSEELcviTTEREKlfseMAHKDSRIQGLLEEIGNTKDDLAASQLSQ 812
Cdd:pfam12128 576 GELNLYGVKLDLKRIDVPEWAaseEELRERLDKAEEAL---QSAREK----QAAAEEQLVQANGELEKASREETFARTAL 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 813 RSSDEECQALKSLHVELKHRQEEVLEESERVKQElsqktqelaqktaegqemlnqmeelreklerrdsSLQSAEKEKNLL 892
Cdd:pfam12128 649 KNARLDLRRLFDEKQSEKDKKNKALAERKDSANE----------------------------------RLNSLEAQLKQL 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 893 TEKLQQTLEEVRALTQEkndlkqlqesLQTERDQLRSDIQDTVNMNIDTQEQLLNALESlkQHQETINMLKMKATEEMS- 971
Cdd:pfam12128 695 DKKHQAWLEEQKEQKRE----------ARTEKQAYWQVVEGALDAQLALLKAAIAARRS--GAKAELKALETWYKRDLAs 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 972 ---DHLPIKGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKE---- 1044
Cdd:pfam12128 763 lgvDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKlrra 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1045 QLKMDLKENIEMSVENQEELRILRDELKRQQEI--------AAQEKDHVTEKSEELSRAHERLAEIEEKLKEKneFRNQA 1116
Cdd:pfam12128 843 KLEMERKASEKQQVRLSENLRGLRCEMSKLATLkedanseqAQGSIGERLAQLEDLKLKRDYLSESVKKYVEH--FKNVI 920
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958755386 1117 LALERVETER--LELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMES 1173
Cdd:pfam12128 921 ADHSGSGLAEtwESLREEDHYQNDKGIRLLDYRKLVPYLEQWFDVRVPQSIMVLREQVS 979
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1090-1718 |
4.82e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1090 EELSRAHERLAEIEEKLkeknefrnqalalervetERLELAQKLHENYEKMES----------------ITKERNDLKEL 1153
Cdd:COG4913 235 DDLERAHEALEDAREQI------------------ELLEPIRELAERYAAARErlaeleylraalrlwfAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1154 QESFEIEKKQLKEYAREMESAGLQTKEQLNIAHA--------NLKEYQEIIKELRGSISEKEAQASSTQDTGKTnpasQG 1225
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAqirgnggdRLEQLEREIERLERELEERERRRARLEALLAA----LG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1226 ETPVPREQELLPDAEEARASAEKGSELEpvEEHSRTAHSLttegiEMEILALTKKLEESQKEISCLTKERSDLRRTQEAL 1305
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEEL--EALEEALAEA-----EAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1306 QVE-CAQLKDDAR--RTLANHLE--TEEEL----------SLARcclkeqenkidSLIVSlSQKEAELSSV--------R 1362
Cdd:COG4913 446 RDAlAEALGLDEAelPFVGELIEvrPEEERwrgaiervlgGFAL-----------TLLVP-PEHYAAALRWvnrlhlrgR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1363 VQLEvttgelerKVQELCEKQEQLNIKETS---EVQGKMSEL-DHIRAlLLTKDSALQSVES-DRLR-------LNKQLE 1430
Cdd:COG4913 514 LVYE--------RVRTGLPDPERPRLDPDSlagKLDFKPHPFrAWLEA-ELGRRFDYVCVDSpEELRrhpraitRAGQVK 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1431 ESQE--EIKILIKEREEL------RRAQEALHVEREQQQESIKEISTRLQELQDKEyeylvmkslnetqgnkcedlnQQL 1502
Cdd:COG4913 585 GNGTrhEKDDRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAEL---------------------DAL 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1503 EAQKSSLEKVemqnvnltQRLNETLEEMKSVAKERDELRSVEERLTADRD---QLKKSLEETITKNQELQEKGHQLSQVK 1579
Cdd:COG4913 644 QERREALQRL--------AEYSWDEIDVASAEREIAELEAELERLDASSDdlaALEEQLEELEAELEELEEELDELKGEI 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1580 ADLRETMDQMEQLKEQLEAQNSTLEsiEIEKLKLTQQLNENLKEMTLVAKENDDLKIMD---EALREERDQLRESLRQT- 1655
Cdd:COG4913 716 GRLEKELEQAEEELDELQDRLEAAE--DLARLELRALLEERFAAALGDAVERELRENLEeriDALRARLNRAEEELERAm 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1656 ---------EASDL--------EKQEKL-RIAHLDLKEHQETIERLMGSVAkrTEEVSDMNMELERANTRLQEKVQELKA 1717
Cdd:COG4913 794 rafnrewpaETADLdadleslpEYLALLdRLEEDGLPEYEERFKELLNENS--IEFVADLLSKLRRAIREIKERIDPLND 871
|
.
gi 1958755386 1718 S 1718
Cdd:COG4913 872 S 872
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
555-1751 |
5.43e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 555 LMHEVSNLKNLIKHAEEYNQDlenELSSKVELLKEKEDQIKE-LQRYIDA--QKSETTKTDLSYS--------SEATEDL 623
Cdd:TIGR01612 498 ILMRMKDFKDIIDFMELYKPD---EVPSKNIIGFDIDQNIKAkLYKEIEAglKESYELAKNWKKLiheikkelEEENEDS 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 624 KQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQM-------------------YQ--RQLEAK 682
Cdd:TIGR01612 575 IHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEYIKKAIDLkkiiennnayidelakispYQvpEHLKNK 654
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 683 KQVQADLEKELQLAFQE-----ISKLSALVDgKGLLSNLELEKRITDLQKELNKEVEEKETLQKEVhllseLKSLPSEVE 757
Cdd:TIGR01612 655 DKIYSTIKSELSKIYEDdidalYNELSSIVK-ENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETAT-----VELHLSNIE 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 758 TlrrelhEKSEELCVITTEREKLFSEMAHKDSRIqglLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHRQEEVL 837
Cdd:TIGR01612 729 N------KKNELLDIIVEIKKHIHGEINKDLNKI---LEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQI 799
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 838 E----ESERVKQELSQK---TQELAQKTAEGQEMLNQMEELReklerrDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEK 910
Cdd:TIGR01612 800 NidniKDEDAKQNYDKSkeyIKTISIKEDEIFKIINEMKFMK------DDFLNKVDKFINFENNCKEKIDSEHEQFAELT 873
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 911 NDLKQlqeslQTERDQLrSDIQDTVNmniDTQEQLLNALESLKQHQETINMLKM--------KATEEMSDHLPIKgREGS 982
Cdd:TIGR01612 874 NKIKA-----EISDDKL-NDYEKKFN---DSKSLINEINKSIEEEYQNINTLKKvdeyikicENTKESIEKFHNK-QNIL 943
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 983 SDEVEQKLDGIDEENLLAESAHTVVgsgeDHGETEEQRKIDSLLQENSrlQQTLESIIAEKEQLKMDLKENIEMSVENQe 1062
Cdd:TIGR01612 944 KEILNKNIDTIKESNLIEKSYKDKF----DNTLIDKINELDKAFKDAS--LNDYEAKNNELIKYFNDLKANLGKNKENM- 1016
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1063 elrilrdeLKRQQEIAAQEKDHVTEKSEElsrAHERLAEIEEKLKekNEFRNQALALERVETERLELAQKlhENYEKMES 1142
Cdd:TIGR01612 1017 --------LYHQFDEKEKATNDIEQKIED---ANKNIPNIEIAIH--TSIYNIIDEIEKEIGKNIELLNK--EILEEAEI 1081
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1143 ITKERNDLKELQESFEIE---KKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKT 1219
Cdd:TIGR01612 1082 NITNFNEIKEKLKHYNFDdfgKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADK 1161
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1220 NPASQGETPVPREQELLPDAEEARASAEKG-----SELEPVEEHSRTAHSLT----TEGIEMEILALTKKLEESQKE--- 1287
Cdd:TIGR01612 1162 AISNDDPEEIEKKIENIVTKIDKKKNIYDEikkllNEIAEIEKDKTSLEEVKginlSYGKNLGKLFLEKIDEEKKKSehm 1241
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1288 ISCLTKERSDLRRTQEALQvecaqlkddarrtlanhlETEEELSLARCCLKEQE-----NKIDSLIVSLSQKEAE-LSSV 1361
Cdd:TIGR01612 1242 IKAMEAYIEDLDEIKEKSP------------------EIENEMGIEMDIKAEMEtfnisHDDDKDHHIISKKHDEnISDI 1303
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1362 RVQ-LEVTTGELERKVQELCEKQEQLNI----KETSEVQGKMSE---------LDHIRALLLTKDSALQSVESDRLRLNK 1427
Cdd:TIGR01612 1304 REKsLKIIEDFSEESDINDIKKELQKNLldaqKHNSDINLYLNEianiynilkLNKIKKIIDEVKEYTKEIEENNKNIKD 1383
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1428 QLEESQEEIKIlIKEREELRRAQEALH--VEREQQQESIKEIS-TRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEA 1504
Cdd:TIGR01612 1384 ELDKSEKLIKK-IKDDINLEECKSKIEstLDDKDIDECIKKIKeLKNHILSEESNIDTYFKNADENNENVLLLFKNIEMA 1462
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1505 QKSSLEKVEMQNVNLT-------QRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKgHQLSQ 1577
Cdd:TIGR01612 1463 DNKSQHILKIKKDNATndhdfniNELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIK-NKFAK 1541
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1578 VKADLRETMDQMEQLKEQ--LEAQNS--TLESIEIEKLKLTQQLNENLK--------EMTLVAKENDDLKIMDealreER 1645
Cdd:TIGR01612 1542 TKKDSEIIIKEIKDAHKKfiLEAEKSeqKIKEIKKEKFRIEDDAAKNDKsnkaaidiQLSLENFENKFLKISD-----IK 1616
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1646 DQLRESLRQTEAsdLEKQ-EKLRIAHLDLK-----EHQETIERLMGSVAKRTEEVSDMNMELERANTRLQ----EKVQEL 1715
Cdd:TIGR01612 1617 KKINDCLKETES--IEKKiSSFSIDSQDTElkengDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEkieiDVDQHK 1694
|
1290 1300 1310
....*....|....*....|....*....|....*.
gi 1958755386 1716 KASELQLLKSKVEAGETKKQLKEQGLALSKIEMENL 1751
Cdd:TIGR01612 1695 KNYEIGIIEKIKEIAIANKEEIESIKELIEPTIENL 1730
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1273-2162 |
6.00e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1273 EILALTKKLEESQ-KEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSL 1351
Cdd:pfam02463 145 EIIAMMKPERRLEiEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1352 SQKEAELSSVRVQLEVTTGELERKVQELCEKQEQLNIKETSEVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEE 1431
Cdd:pfam02463 225 YLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1432 SQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEYLVMKSLNETQGNKCEDLNQQLEAQKSSLEK 1511
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1512 VEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQ 1591
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1592 LKEQLEAQNSTLESIEIEKLKLTQQLNE-NLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAH 1670
Cdd:pfam02463 465 LELKKSEDLLKETQLVKLQEQLELLLSRqKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1671 LDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQ--------GLA 1742
Cdd:pfam02463 545 ISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLeadeddkrAKV 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1743 LSKIEMENLNLAQQIHQNLEEMKSISKERDDLKRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQYGKGLLCGGEQHCT 1822
Cdd:pfam02463 625 VEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1823 GRLREKCLRIEKLLKRYSEMANDYECLNRFSLDLEKETKTQKELS-VTIKTKLSLPYTQTKEIEKLLTANQRCSMEFHRI 1901
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEeEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1902 LKKLKYVLSYITRIKEEQhefINKFEMAFIQEVEKQNELQIKIQSLSQTSNIPSRDSQSKLSQEMDLHIEEILKDFSEND 1981
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEE---LRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEE 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1982 FLTIKTEVKQVLSNRKEITEFLEKWLNTHFDTENLKSSIQKENKSiglvnnfyhsKITAMVNESTEFEERCAARAKDLER 2061
Cdd:pfam02463 862 EITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEES----------QKLNLLEEKENEIEERIKEEAEILL 931
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 2062 HLKALTETteqlSKVYQSLTVSWSIVRPSTQDSKDPRVALEAEQLTSKDKNALGAMPYKEEIEDLKMQLVKIDLEKKAKA 2141
Cdd:pfam02463 932 KYEEEPEE----LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKL 1007
|
890 900
....*....|....*....|.
gi 1958755386 2142 KEFEKEMLAIKATVEHQEEVI 2162
Cdd:pfam02463 1008 IRAIIEETCQRLKEFLELFVS 1028
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1125-1357 |
6.52e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 6.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1125 ERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSIS 1204
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1205 EKEA----QASSTQDTGKTNPAsqgetpvpreqELLPDAEEARASAEKGSELEPVEEHSRTahslttegIEMEILALTKK 1280
Cdd:COG4942 101 AQKEelaeLLRALYRLGRQPPL-----------ALLLSPEDFLDAVRRLQYLKYLAPARRE--------QAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755386 1281 LEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLETEEELSLARCCLKEQENKIDSLIVSLSQKEAE 1357
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1400-1656 |
7.18e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.13 E-value: 7.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1400 ELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEY 1479
Cdd:COG1340 23 EIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELREELDELRKELA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1480 EYLVMKSLNETQGNKCEDLNQQLEAQKSSLEKvEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLE 1559
Cdd:COG1340 103 ELNKAGGSIDKLRKEIERLEWRQQTEVLSPEE-EKELVEKIKELEKELEKAKKALEKNEKLKELRAELKELRKEAEEIHK 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1560 ETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDLK--IM 1637
Cdd:COG1340 182 KIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKreKE 261
|
250
....*....|....*....
gi 1958755386 1638 DEALREERDQLRESLRQTE 1656
Cdd:COG1340 262 KEELEEKAEEIFEKLKKGE 280
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1583-1794 |
7.99e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 7.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1583 RETMDQMEQLKEQLEAQNSTLESIEI--EKLKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDL 1660
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALEDarEQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1661 EK-----QEKLRIAHLDLKEHQETIERLMGSVAKR-TEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKK 1734
Cdd:COG4913 301 RAelarlEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1735 QLKEqglalskiemenlnLAQQIHQNLEEMKSISK----ERDDLKRMEEILRMEKDQLKDSLRE 1794
Cdd:COG4913 381 EFAA--------------LRAEAAALLEALEEELEaleeALAEAEAALRDLRRELRELEAEIAS 430
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
943-1184 |
8.23e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 943 EQLLNALESLKQHQETINMLKmkateemsdhlPIKGREGSSDEVEQKLDGIDEENLLAESAhtvvgsgEDHGETEEqrKI 1022
Cdd:PRK05771 43 ERLRKLRSLLTKLSEALDKLR-----------SYLPKLNPLREEKKKVSVKSLEELIKDVE-------EELEKIEK--EI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1023 DSLLQENSRLQQTLESIIAEKEQLK------MDLK-----ENIEM---SVENQEELRILRDELKRQQEIAAQEKDH---- 1084
Cdd:PRK05771 103 KELEEEISELENEIKELEQEIERLEpwgnfdLDLSlllgfKYVSVfvgTVPEDKLEELKLESDVENVEYISTDKGYvyvv 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1085 -VTEKseelsrahERLAEIEEKLKeKNEFRNQALALERVETERLelaqklHENYEKMESITKERNDLKElqesfeiekkQ 1163
Cdd:PRK05771 183 vVVLK--------ELSDEVEEELK-KLGFERLELEEEGTPSELI------REIKEELEEIEKERESLLE----------E 237
|
250 260
....*....|....*....|.
gi 1958755386 1164 LKEYAREMESAGLQTKEQLNI 1184
Cdd:PRK05771 238 LKELAKKYLEELLALYEYLEI 258
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1143-1805 |
8.81e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 8.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1143 ITKERNDLKELQESFEIEKKQLKEYA---REMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKT 1219
Cdd:pfam12128 236 IMKIRPEFTKLQQEFNTLESAELRLShlhFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADA 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1220 NPASqgetpvpREQELlpDAEEARASAEKGSELEPVEEHSRTAHSLTTEGIEMEilALTKKLEESQKEISCLTKERSDLR 1299
Cdd:pfam12128 316 AVAK-------DRSEL--EALEDQHGAFLDADIETAAADQEQLPSWQSELENLE--ERLKALTGKHQDVTAKYNRRRSKI 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1300 RTQEALQVECAQLKDDARRTLANHLETEEELSLarcclkeqenkidslivslsqkEAELSSVRVQLEVTTGELERKVQEL 1379
Cdd:pfam12128 385 KEQNNRDIAGIKDKLAKIREARDRQLAVAEDDL----------------------QALESELREQLEAGKLEFNEEEYRL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1380 CEKQEQLNIKetsevqgkmseldhIRALLLTKDSALQSVESDRLrlnkqLEESQEEIKILIKEREELRRAQEALHVEREQ 1459
Cdd:pfam12128 443 KSRLGELKLR--------------LNQATATPELLLQLENFDER-----IERAREEQEAANAEVERLQSELRQARKRRDQ 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1460 QQESIKEISTRLQELQDKEYEylVMKSLNETQGNKCEDLNQQLEAQKSSLEKVemqnVNLTQRLNETLEEMKSVAKERDE 1539
Cdd:pfam12128 504 ASEALRQASRRLEERQSALDE--LELQLFPQAGTLLHFLRKEAPDWEQSIGKV----ISPELLHRTDLDPEVWDGSVGGE 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1540 LRSVEERLTADRDQLKKSLEetitKNQELQEKghqLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEK---LKLTQQ 1616
Cdd:pfam12128 578 LNLYGVKLDLKRIDVPEWAA----SEEELRER---LDKAEEALQSAREKQAAAEEQLVQANGELEKASREEtfaRTALKN 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1617 LNENLKEMTlVAKENDDLKImDEALREERDQLRESLRQTEAsdleKQEKLRIAHLDLKEHQ--ETIERLMGSVAKRTEEV 1694
Cdd:pfam12128 651 ARLDLRRLF-DEKQSEKDKK-NKALAERKDSANERLNSLEA----QLKQLDKKHQAWLEEQkeQKREARTEKQAYWQVVE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1695 SDMNMELERANTRLqEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLnlaqqiHQNLEEmksISKERDDL 1774
Cdd:pfam12128 725 GALDAQLALLKAAI-AARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTL------ERKIER---IAVRRQEV 794
|
650 660 670
....*....|....*....|....*....|.
gi 1958755386 1775 KRMEEILRMEKDQLKDSLREAKFKAHQNYEE 1805
Cdd:pfam12128 795 LRYFDWYQETWLQRRPRLATQLSNIERAISE 825
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
719-975 |
1.03e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.51 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 719 EKRITDLQkELNKEVEEKETLQKEVHLLsELKSlpSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEI 798
Cdd:PLN02939 149 QARLQALE-DLEKILTEKEALQGKINIL-EMRL--SETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSL 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 799 GNTKDDLAASQLSQRssdEECQALKSLHVELKHRQEEVLE-ESERVKQELSqkTQELAQKTAEGQEMLNQMEELR----- 872
Cdd:PLN02939 225 SKELDVLKEENMLLK---DDIQFLKAELIEVAETEERVFKlEKERSLLDAS--LRELESKFIVAQEDVSKLSPLQydcww 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 873 EKLERRDSSLQSAEK--EKNLLT-----------EKLQQTLEE--VRALTQEKNDLKQLQESLQTERDQlRSDIQdtvnm 937
Cdd:PLN02939 300 EKVENLQDLLDRATNqvEKAALVldqnqdlrdkvDKLEASLKEanVSKFSSYKVELLQQKLKLLEERLQ-ASDHE----- 373
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1958755386 938 nIDTQEQLLNalESLKQHQETINML----KMKATEEMSDHLP 975
Cdd:PLN02939 374 -IHSYIQLYQ--ESIKEFQDTLSKLkeesKKRSLEHPADDMP 412
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1502-1771 |
1.05e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.66 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1502 LEAQKSSLEKV-EMQNV-----NLTQRLNETLeemksvAKERDELRSVEERLTADrdqlkkSLEETITK-NQELQEKGHQ 1574
Cdd:PRK10929 57 LEERKGSLERAkQYQQVidnfpKLSAELRQQL------NNERDEPRSVPPNMSTD------ALEQEILQvSSQLLEKSRQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1575 LSQVKADLRETMDQMEQLKEQLEAQNSTLESIEieklkltQQLNENLKEMTLVAkenddlkimdealreerdQLRESLRQ 1654
Cdd:PRK10929 125 AQQEQDRAREISDSLSQLPQQQTEARRQLNEIE-------RRLQTLGTPNTPLA------------------QAQLTALQ 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1655 TEASDLE-KQEKLRIAHLDLKEHQEtIERLMGSVAKRTEEVSDMNMELERANTRLQEKvqelKASELQLlkskveagETK 1733
Cdd:PRK10929 180 AESAALKaLVDELELAQLSANNRQE-LARLRSELAKKRSQQLDAYLQALRNQLNSQRQ----REAERAL--------EST 246
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1958755386 1734 KQLKEQGLALSKIEMENL----NLAQQIHQNLEEMKSI-SKER 1771
Cdd:PRK10929 247 ELLAEQSGDLPKSIVAQFkinrELSQALNQQAQRMDLIaSQQR 289
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1582-1808 |
1.26e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1582 LRETMDQMEQLK---EQLEAQnstLESIEIEK------LKLTQQLNEnlKEMTLVAKENDDLKIMDEALREERDQLRESL 1652
Cdd:COG1196 181 LEATEENLERLEdilGELERQ---LEPLERQAekaeryRELKEELKE--LEAELLLLKLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1653 RQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKRTEEVSdmnmELERANTRLQEKVQELKAS----ELQLLKSKVE 1728
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA----RLEQDIARLEERRRELEERleelEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1729 AGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDlkRMEEILRMEKDQLKDSLREAKFKAHQNYEETVQ 1808
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE--AEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
1444-1595 |
1.35e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 44.21 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1444 EELRRAQEALhveRE--QQQESIKEISTRLQELQDKEYEYlvMKSLNETQGNKCEDLNQQLEAQKSSLEKvemqnvnltQ 1521
Cdd:pfam13779 489 RRLRAAQERL---SEalERGASDEEIAKLMQELREALDDY--MQALAEQAQQNPQDLQQPDDPNAQEMTQ---------Q 554
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 1522 RLNETLEEMKSVAKE--RDELRsveERLtadrDQLKKSLE--ETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQ 1595
Cdd:pfam13779 555 DLQRMLDRIEELARSgrRAEAQ---QML----SQLQQMLEnlQAGQPQQQQQQGQSEMQQAMDELGDLLREQQQLLDE 625
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1298-1744 |
1.35e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1298 LRRTQEALQVECAQlkddarRTLANHLETEEELSLARCCLKEQENKiDSLIVSLSQKEAELSSVRVQLEVTTGELERKVQ 1377
Cdd:PRK04863 242 NRMTLEAIRVTQSD------RDLFKHLITESTNYVAADYMRHANER-RVHLEEALELRRELYTSRRQLAAEQYRLVEMAR 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1378 ELCEKQEQLNIKETsEVQGKMSELDHIRALLLTKDsALQSVESDRLRLNKQLEESQEEikilikeREELRRAQEALHVER 1457
Cdd:PRK04863 315 ELAELNEAESDLEQ-DYQAASDHLNLVQTALRQQE-KIERYQADLEELEERLEEQNEV-------VEEADEQQEENEARA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1458 EQQQESIKEISTRLQELQdKEYEYLVMKSLNETQG-NKCEDLNQQLEAQKSSLEKVEmqnvnltqrlnETLEEMKSVAKE 1536
Cdd:PRK04863 386 EAAEEEVDELKSQLADYQ-QALDVQQTRAIQYQQAvQALERAKQLCGLPDLTADNAE-----------DWLEEFQAKEQE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1537 R-DELRSVEERLT---ADRDQLKKSLE--ETITKNQELQEKGHQLSQVKADLRETMDQMEQLkEQLEAQNSTLEsieiEK 1610
Cdd:PRK04863 454 AtEELLSLEQKLSvaqAAHSQFEQAYQlvRKIAGEVSRSEAWDVARELLRRLREQRHLAEQL-QQLRMRLSELE----QR 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1611 LKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRiahLDLKEHQETIERLMG----- 1685
Cdd:PRK04863 529 LRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALR---QQLEQLQARIQRLAArapaw 605
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 1686 -----SVAKRTEEVSDmnmELERANtRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALS 1744
Cdd:PRK04863 606 laaqdALARLREQSGE---EFEDSQ-DVTEYMQQLLERERELTVERDELAARKQALDEEIERLS 665
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
838-1132 |
1.44e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 838 EESERVKQELSqktqELAQKTAEGQEMLnqmEELREKLERRDSSLQSAEKEKNLLTEKL---------QQT--------- 899
Cdd:COG3096 347 EKIERYQEDLE----ELTERLEEQEEVV---EEAAEQLAEAEARLEAAEEEVDSLKSQLadyqqaldvQQTraiqyqqav 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 900 --LEEVRALTQEKN-DLKQLQESLQTERDQlrsdiQDTVNMNIDTQEQLLN-ALESLKQHQETinmlkMKATEEMSDHLP 975
Cdd:COG3096 420 qaLEKARALCGLPDlTPENAEDYLAAFRAK-----EQQATEEVLELEQKLSvADAARRQFEKA-----YELVCKIAGEVE 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 976 ikgREGSSDEVEQKLDGIDEENLLAESAHTVVGS-GEDHGETEEQRKIDSLLQE-NSRLQQTLESIIaEKEQLKMDLKEN 1053
Cdd:COG3096 490 ---RSQAWQTARELLRRYRSQQALAQRLQQLRAQlAELEQRLRQQQNAERLLEEfCQRIGQQLDAAE-ELEELLAELEAQ 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1054 IEMSVENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEK-------NEFRNQALALER-VETE 1125
Cdd:COG3096 566 LEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEAladsqevTAAMQQLLEREReATVE 645
|
....*..
gi 1958755386 1126 RLELAQK 1132
Cdd:COG3096 646 RDELAAR 652
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
712-1079 |
1.48e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 712 LLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRI 791
Cdd:pfam17380 274 LLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 792 QglLEEigntkddlaASQLSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQelaQKTAEGQEMLNQMEEL 871
Cdd:pfam17380 354 R--QEE---------RKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARK---VKILEEERQRKIQQQK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 872 REKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNdlKQLQESLQTERDQLRSDIQdtvnmnidtqeqllnaLES 951
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQ--QQVERLRQQEEERKRKKLE----------------LEK 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 952 LKQHQETINMLKMKATEEmsdhlPIKGREGSSDEVEQKLDGIDEEnllAESAHTVVGSGEDHGETEEQRKIDSLLQENSR 1031
Cdd:pfam17380 482 EKRDRKRAEEQRRKILEK-----ELEERKQAMIEEERKRKLLEKE---MEERQKAIYEEERRREAEEERRKQQEMEERRR 553
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1958755386 1032 LQQTLESIIAEKEQLKMDLKEniemsvenQEELRILRDELKRQQEIAA 1079
Cdd:pfam17380 554 IQEQMRKATEERSRLEAMERE--------REMMRQIVESEKARAEYEA 593
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1042-1619 |
1.68e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1042 EKEQLKMDLKENIEMSVENQEELRI------------LRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEK 1109
Cdd:pfam05483 180 ETRQVYMDLNNNIEKMILAFEELRVqaenarlemhfkLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1110 N----EFRNQALALErvETERLElAQKLHENYEKMESITKERNDLK-----------ELQESFEIEKKQLKEYAREMESa 1174
Cdd:pfam05483 260 TflleESRDKANQLE--EKTKLQ-DENLKELIEKKDHLTKELEDIKmslqrsmstqkALEEDLQIATKTICQLTEEKEA- 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1175 glqTKEQLNIAHANlkeYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEP 1254
Cdd:pfam05483 336 ---QMEELNKAKAA---HSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEE 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1255 VEEHSRTAHSLTTEGIEMEILA---------LTKKLEESQKEISCLTKERSDLRRTQEALQVECAQLKDDARRTLANHLE 1325
Cdd:pfam05483 410 LKKILAEDEKLLDEKKQFEKIAeelkgkeqeLIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1326 TEEELSLARCCLKEQENKIDSLIVSLSQKEAELSSVRVQLEvttgELERKVQELCEKQEQLNIKETSEVQGKMSELDHIR 1405
Cdd:pfam05483 490 LTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEE----RMLKQIENLEEKEMNLRDELESVREEFIQKGDEVK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1406 ALLLTKDSALQSVESDRLRLNKQLEESQEEIKILIKEREELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEY-LVM 1484
Cdd:pfam05483 566 CKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLeLEL 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1485 KSLNETQGNKCEDLNQQLEAQKSS----LEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQL--KKSL 1558
Cdd:pfam05483 646 ASAKQKFEEIIDNYQKEIEDKKISeeklLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIieERDS 725
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 1559 EETITKNQElQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNE 1619
Cdd:pfam05483 726 ELGLYKNKE-QEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1393-1562 |
1.71e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1393 EVQGKMSELDHIRALLLTKDSALQSVESDRLRLNKQLEESQEEIkilikerEELRRAQEALHVEREQQQESIKEISTRLQ 1472
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTEL-------EDLEKEIKRLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1473 ELQD-KEYEYLvMKSLnETQGNKCEDLNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERD----ELRSVEERL 1547
Cdd:COG1579 84 NVRNnKEYEAL-QKEI-ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDeelaELEAELEEL 161
|
170
....*....|....*
gi 1958755386 1548 TADRDQLKKSLEETI 1562
Cdd:COG1579 162 EAEREELAAKIPPEL 176
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1455-1657 |
1.75e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 43.14 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1455 VEREQQQESikeisTRLQELQDKEYEY-LVMKSLNETQgNKCEDLNQQLEAQKSSLEKVEM----QNVNLTQRLNETLEE 1529
Cdd:PRK11637 63 VRQQQQQRA-----SLLAQLKKQEEAIsQASRKLRETQ-NTLNQLNKQIDELNASIAKLEQqqaaQERLLAAQLDAAFRQ 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1530 MKSVAKE---RDELRSVEERLTADRDQLKKSLEETITknqELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESI 1606
Cdd:PRK11637 137 GEHTGLQlilSGEESQRGERILAYFGYLNQARQETIA---ELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQA 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 1607 EIEKLKLTQQLNENLKEmtlvakendDLKIMDEaLREERDQLRESLRQTEA 1657
Cdd:PRK11637 214 RNERKKTLTGLESSLQK---------DQQQLSE-LRANESRLRDSIARAER 254
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1481-1606 |
2.24e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1481 YLVMKSLNETQGNKCEDLNQQL--EAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKER-DELRSVEERLTADRDQLKKS 1557
Cdd:PRK12704 22 YFVRKKIAEAKIKEAEEEAKRIleEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERrNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1958755386 1558 LEETITKNQELQEKGHQLSQVKADLREtmdQMEQLKEQLEAQNSTLESI 1606
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEK---KEEELEELIEEQLQELERI 147
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1419-1776 |
2.25e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.19 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1419 ESDRLRLNKQLEESQEEIKILIKERE----ELRRAQEALHVEREQQQESIKEISTRLQELQDKEYEylvmkslnetqgnK 1494
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKrariELEKKASALKRQLDRESDRNQELQKRIRLLEKREAE-------------A 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1495 CEDLNQQLEAQKSSLEKVEMQNVNLTqrlnetlEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQ 1574
Cdd:pfam05557 68 EEALREQAELNRLKKKYLEALNKKLN-------EKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQER 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1575 LSQvkadLRETMDQMEQLKEQLEAQNSTLESIE--IEKLKLTQQLNENLKEMTLVAKEN----DDLKIMDEALREERDQL 1648
Cdd:pfam05557 141 LDL----LKAKASEAEQLRQNLEKQQSSLAEAEqrIKELEFEIQSQEQDSEIVKNSKSElariPELEKELERLREHNKHL 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1649 RESLRQTEAsdlekqeklriahldLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKV-------------QEL 1715
Cdd:pfam05557 217 NENIENKLL---------------LKEEVEDLKRKLEREEKYREEAATLELEKEKLEQELQSWVklaqdtglnlrspEDL 281
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 1716 KASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKERDDLKR 1776
Cdd:pfam05557 282 SRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVR 342
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1498-1667 |
2.28e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1498 LNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERD----ELRSVEERLTADRDQLKksleeTITKNQELQEKGH 1573
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrlelEIEEVEARIKKYEEQLG-----NVRNNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1574 QLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEmtlVAKENDDLKIMDEALREERDQLRESLr 1653
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE---LDEELAELEAELEELEAEREELAAKI- 172
|
170
....*....|....
gi 1958755386 1654 qtEASDLEKQEKLR 1667
Cdd:COG1579 173 --PPELLALYERIR 184
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1532-1796 |
2.56e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1532 SVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKgHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKL 1611
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQK-NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1612 KLTQQLNENLKEMTLVAKenddlkimDEALREERDQLREsLRQTEAsdlEKQEKLRIAHLDLKEHQETIERLMGSVAKRT 1691
Cdd:COG3206 244 ALRAQLGSGPDALPELLQ--------SPVIQQLRAQLAE-LEAELA---ELSARYTPNHPDVIALRAQIAALRAQLQQEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1692 EEVSDmnmELERANTRLQEKVQELKASElqllkskveagetkkqlkeqglalskiemenlnlaQQIHQNLEEMKSISKER 1771
Cdd:COG3206 312 QRILA---SLEAELEALQAREASLQAQL-----------------------------------AQLEARLAELPELEAEL 353
|
250 260
....*....|....*....|....*
gi 1958755386 1772 DDLKRMEEILRMEKDQLKDSLREAK 1796
Cdd:COG3206 354 RRLEREVEVARELYESLLQRLEEAR 378
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
828-956 |
2.59e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 828 ELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKL-ERRDSSLQSAEKEKNlltEKLQQTLEEVRAL 906
Cdd:PRK00409 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLqEEEDKLLEEAEKEAQ---QAIKEAKKEADEI 589
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1958755386 907 TQEKNDLKQLQESLQTERDQlrsdiqdtvnmnIDTQEQLLNALESLKQHQ 956
Cdd:PRK00409 590 IKELRQLQKGGYASVKAHEL------------IEARKRLNKANEKKEKKK 627
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
494-1341 |
2.83e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 494 LSEENLESELTSLNTQYNNLVLDYEQLRRENEDLKLKLKEKNELEEFEFLEQREEKDQELQLMHEVSNLKNLIKHAEEYN 573
Cdd:TIGR00606 202 VQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQM 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 574 QDLENELSSK-VELLKEKEDQIKELQ-------RYIDAQKSETTKTDLSYSSEATEDLKQAMRTLSDLDTVALDAKRESA 645
Cdd:TIGR00606 282 EKDNSELELKmEKVFQGTDEQLNDLYhnhqrtvREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 646 FLRSENLELKERINEL--------SDSCKQMENGIQMYQRQLEAK----KQVQADLEKELQLAFQEISKLSALVDGKGLL 713
Cdd:TIGR00606 362 HIRARDSLIQSLATRLeldgfergPFSERQIKNFHTLVIERQEDEaktaAQLCADLQSKERLKQEQADEIRDEKKGLGRT 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 714 SNLE---LEKRITDLQKEL----NKEVEEKETLQKEVHLLSELKSLP-----SEVETLRRELHEKSEELCVITTEREKLF 781
Cdd:TIGR00606 442 IELKkeiLEKKQEELKFVIkelqQLEGSSDRILELDQELRKAERELSkaeknSLTETLKKEVKSLQNEKADLDRKLRKLD 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 782 SEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSL--HVELKHRQEEVLEESERVKQELSQKTQELAQKTA 859
Cdd:TIGR00606 522 QEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELA 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 860 EGQEMLNQMEELREKLERRDSSL----------QSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQLRS 929
Cdd:TIGR00606 602 SLEQNKNHINNELESKEEQLSSYedklfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCP 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 930 DIQDTVNMNIDTQE---QLLNALESLKQHQETINMLKMKATEEMSDHLPIKgrEGSSDEVEQKLDGIDEENLLAESAHTV 1006
Cdd:TIGR00606 682 VCQRVFQTEAELQEfisDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA--PGRQSIIDLKEKEIPELRNKLQKVNRD 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1007 VgsGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENiEMSVENQ------EELRILRDELKRQQEIAAQ 1080
Cdd:TIGR00606 760 I--QRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDV-ERKIAQQaaklqgSDLDRTVQQVNQEKQEKQH 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1081 EKDHVTEKSEELSRAHERLAEIEEKLKEK-NEFRNQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEI 1159
Cdd:TIGR00606 837 ELDTVVSKIELNRKLIQDQQEQIQHLKSKtNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLET 916
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1160 EKKQLKEYAREM----ESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGETPVPREQEL 1235
Cdd:TIGR00606 917 FLEKDQQEKEELisskETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKI 996
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1236 LPDAEEARASAEKGSELEpveehSRTAHSLTTEGIEMEILALTKKLEESQKEISclTKERSDLRRTQEALQVECAQLKDD 1315
Cdd:TIGR00606 997 NEDMRLMRQDIDTQKIQE-----RWLQDNLTLRKRENELKEVEEELKQHLKEMG--QMQVLQMKQEHQKLEENIDLIKRN 1069
|
890 900
....*....|....*....|....*.
gi 1958755386 1316 ARRTLANHLETEEELSLARCCLKEQE 1341
Cdd:TIGR00606 1070 HVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
558-758 |
3.13e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 558 EVSNLKNLIKHAEEYNQDLENELSSKVELLKEKEDQIKELQRYIDAQKSETTKTDLSYsSEATEDLKQAMR-------TL 630
Cdd:COG3883 24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEI-EERREELGERARalyrsggSV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 631 SDLDTVaLDAKRESAFL-RSENLEL-----KERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLS 704
Cdd:COG3883 103 SYLDVL-LGSESFSDFLdRLSALSKiadadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQE 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958755386 705 ALVDgkgllsnlELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVET 758
Cdd:COG3883 182 ALLA--------QLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1417-1648 |
3.20e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1417 SVESDRLRLNK-QLEESQEEIKILikeREELRRAQEALHVEREQQQESIKEISTRLQELQDKeYEYLV-----MKSLNET 1490
Cdd:PHA02562 163 SVLSEMDKLNKdKIRELNQQIQTL---DMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK-YDELVeeaktIKAEIEE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1491 QGNKCEDLNQQLEAQKSSLEKvemqnvnLTQRLNETLEEMKSVAKE-------------RDELRSVEERLTADRDQLK-- 1555
Cdd:PHA02562 239 LTDELLNLVMDIEDPSAALNK-------LNTAAAKIKSKIEQFQKVikmyekggvcptcTQQISEGPDRITKIKDKLKel 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1556 -KSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEKLKLTQQLNENLKEMTLVAKENDDL 1634
Cdd:PHA02562 312 qHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
|
250
....*....|....
gi 1958755386 1635 KIMDEALREERDQL 1648
Cdd:PHA02562 392 VKTKSELVKEKYHR 405
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1017-1159 |
3.34e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1017 EEQRKIDSL---LQENSRLQQT----LESIIAEKEQLKMDLKENIEmsvENQEElrilRDELKRQQEIAAQEKdhvteks 1089
Cdd:PRK00409 513 EDKEKLNELiasLEELERELEQkaeeAEALLKEAEKLKEELEEKKE---KLQEE----EDKLLEEAEKEAQQA------- 578
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1090 eeLSRAHERLAEIEEKLKEKNEFRNQALALERVETERlelaQKLHENYEKMESITKERndlKELQESFEI 1159
Cdd:PRK00409 579 --IKEAKKEADEIIKELRQLQKGGYASVKAHELIEAR----KRLNKANEKKEKKKKKQ---KEKQEELKV 639
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
336-1636 |
3.47e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 3.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 336 NEVSNDEALLKRYRREIVDLKKQLEEVNTKTRAQEIEK----DQLAQLLDEKDLLQKVQ---DEKIQNlkrmlVTSSSIA 408
Cdd:TIGR01612 544 AGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIkdlfDKYLEIDDEIIYINKLKlelKEKIKN-----ISDKNEY 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 409 LQQELEIKK--KRRVTWCFGKMKDSNY-VKEFKIPTNITTRTRKTSVTPLRENSLMKLGE--SALSWESEVfDNT----- 478
Cdd:TIGR01612 619 IKKAIDLKKiiENNNAYIDELAKISPYqVPEHLKNKDKIYSTIKSELSKIYEDDIDALYNelSSIVKENAI-DNTedkak 697
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 479 ---LEPLAEAEWSSATALlSEENLESELTSLNTQYNNLVLD--------YEQLRRENEDLKLKLKEKNELEEFEFLEQRE 547
Cdd:TIGR01612 698 lddLKSKIDKEYDKIQNM-ETATVELHLSNIENKKNELLDIiveikkhiHGEINKDLNKILEDFKNKEKELSNKINDYAK 776
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 548 EKDQELQLMHEVSNLKNlikhaeEYNqDLENELSSKVELLKEKEDQIKELQRYIDAQKSETTKTdlsysSEATEDLKQAM 627
Cdd:TIGR01612 777 EKDELNKYKSKISEIKN------HYN-DQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKI-----INEMKFMKDDF 844
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 628 rtLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKqmENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSAlV 707
Cdd:TIGR01612 845 --LNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEIS--DDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKK-V 919
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 708 DGKgllsnLELEKRITD-LQKELNKEVEEKETLQKEVHLLSELKSL-PSEVETLRRELHEKSEELcvitterEKLFSEMA 785
Cdd:TIGR01612 920 DEY-----IKICENTKEsIEKFHNKQNILKEILNKNIDTIKESNLIeKSYKDKFDNTLIDKINEL-------DKAFKDAS 987
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 786 HKD--SRIQGLLEEIGNTKDDLAASQ--LSQRSSDEECQALKSLHVELKHRQEEVLEESERVKQELSQKTQELAQKTAEG 861
Cdd:TIGR01612 988 LNDyeAKNNELIKYFNDLKANLGKNKenMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIGKN 1067
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 862 QEMLNqmeelREKLERRDSSLQSAEKEKnlltEKLQqtleevraLTQEKNDLKQLQESLQTERDQLRSDIQdTVNMNIDT 941
Cdd:TIGR01612 1068 IELLN-----KEILEEAEINITNFNEIK----EKLK--------HYNFDDFGKEENIKYADEINKIKDDIK-NLDQKIDH 1129
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 942 QeqlLNALESLKQHQET-INMLKMKAT--EEMSDH-LPIKGREGSSDEVEQKLDGIDEENLLAEsahtvvgsgedhgete 1017
Cdd:TIGR01612 1130 H---IKALEEIKKKSENyIDEIKAQINdlEDVADKaISNDDPEEIEKKIENIVTKIDKKKNIYD---------------- 1190
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1018 eqrKIDSLLQENSRLqqtlesiiaEKEQLKMDLKENIEMSVEnqeelrilrdelKRQQEIAAQEKDHVTEKSEELSRAHE 1097
Cdd:TIGR01612 1191 ---EIKKLLNEIAEI---------EKDKTSLEEVKGINLSYG------------KNLGKLFLEKIDEEKKKSEHMIKAME 1246
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1098 RLAEIEEKLKEKNEFRNQALALERVETERLELAQKLHENYEKMESITKERND---------LKELQESFEIE-----KKQ 1163
Cdd:TIGR01612 1247 AYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDEnisdireksLKIIEDFSEESdindiKKE 1326
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1164 LKEYAREMESAGLQTKEQLN-IAHA----NLKEYQEIIKELRGSISEKEAQASSTQDTgktnpASQGETPVPREQELLpD 1238
Cdd:TIGR01612 1327 LQKNLLDAQKHNSDINLYLNeIANIynilKLNKIKKIIDEVKEYTKEIEENNKNIKDE-----LDKSEKLIKKIKDDI-N 1400
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1239 AEEARASAEKGSELEPVEEHSRTAHSLTTEGI--EMEILALTKKLEESQKEISCLTK--ERSDlRRTQEALQVEcaqlKD 1314
Cdd:TIGR01612 1401 LEECKSKIESTLDDKDIDECIKKIKELKNHILseESNIDTYFKNADENNENVLLLFKniEMAD-NKSQHILKIK----KD 1475
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1315 DARRTLANHL-ETEEELSLARCCLKE------QENKIDSLIVSLSQKEAELSSVRVQLEV------TTGELERKVQELCE 1381
Cdd:TIGR01612 1476 NATNDHDFNInELKEHIDKSKGCKDEadknakAIEKNKELFEQYKKDVTELLNKYSALAIknkfakTKKDSEIIIKEIKD 1555
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1382 KQEQLNIK-ETSEVQGKMSELDHIRalllTKDSALQSVESDRLRLNKQLEESQEEIKIL------------IKEREELRR 1448
Cdd:TIGR01612 1556 AHKKFILEaEKSEQKIKEIKKEKFR----IEDDAAKNDKSNKAAIDIQLSLENFENKFLkisdikkkindcLKETESIEK 1631
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1449 AQEALHVerEQQQESIKEISTRLQELQDkeyeylVMKSLNETQGNkCEDLNQQLEAQKSSLEKVEMqNVNLTQRLNE--T 1526
Cdd:TIGR01612 1632 KISSFSI--DSQDTELKENGDNLNSLQE------FLESLKDQKKN-IEDKKKELDELDSEIEKIEI-DVDQHKKNYEigI 1701
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1527 LEEMKSVAK-ERDELRSVEERLTADRDQLKKSLE----ETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNS 1601
Cdd:TIGR01612 1702 IEKIKEIAIaNKEEIESIKELIEPTIENLISSFNtndlEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETVSKEPI 1781
|
1370 1380 1390
....*....|....*....|....*....|....*...
gi 1958755386 1602 TLEsiEIEKLKLTQQlNENLKEMTLVAKEN---DDLKI 1636
Cdd:TIGR01612 1782 TYD--EIKNTRINAQ-NEFLKIIEIEKKSKsylDDIEA 1816
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
831-969 |
3.80e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 831 HRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLqsaEKEKNLLTEKLQQtleevraLTQEK 910
Cdd:PRK12704 54 IKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL---EKREEELEKKEKE-------LEQKQ 123
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958755386 911 NDLKQLQESLQTERDQLRSDIQDTVNMNID-TQEQLLNALESLKQHQ--ETINMLKMKATEE 969
Cdd:PRK12704 124 QELEKKEEELEELIEEQLQELERISGLTAEeAKEILLEKVEEEARHEaaVLIKEIEEEAKEE 185
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
916-1339 |
3.80e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 916 LQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKateemsdhlpIKGREGSSDEVEQKLDGIDE 995
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEE----------LEELEEELEELEAELEELRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 996 ENLLAESAHTVVGSGEDHGETEEQ--------RKIDSLLQENSRLQQTLESIIAEKEQLKMDLKE-NIEMSVENQEELRI 1066
Cdd:COG4717 117 ELEKLEKLLQLLPLYQELEALEAElaelperlEELEERLEELRELEEELEELEAELAELQEELEElLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1067 LRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFR--NQALALERVETERLELAQKLHENYEKMESI- 1143
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEErlKEARLLLLIAAALLALLGLGGSLLSLILTIa 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1144 ------------------------TKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKEL 1199
Cdd:COG4717 277 gvlflvlgllallflllarekaslGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1200 RGsiSEKEAQASSTQDTGKTNPASQGETPVPREQELLPDAEEARASAEKGSELEP-VEEHSRTAHSL----TTEGIEMEI 1274
Cdd:COG4717 357 EE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEqLEELLGELEELlealDEEELEEEL 434
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1275 LALTKKLEESQKEISCLTKERSDLRRTQEALQ-----VECAQLKDDARRTLANHLETEEELSLARCCLKE 1339
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEedgelAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
746-1055 |
3.99e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 746 LSELKSLPSEVETLRRELHEKSEELCVITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSL 825
Cdd:COG4372 37 LFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 826 HVELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEK-NLLTEKLQQTLEEVR 904
Cdd:COG4372 117 LEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEaEQALDELLKEANRNA 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 905 ALTQEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSD 984
Cdd:COG4372 197 EKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEE 276
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958755386 985 EVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIE 1055
Cdd:COG4372 277 ELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLL 347
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
559-1111 |
4.28e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 559 VSNLKNLIKHAEEYNQDLENELSSKVELLKEKEdQIKELQRYIDAQksETTKTDLSYSSEATEDLKQAMRTLSDLDTVAL 638
Cdd:pfam10174 194 LGHLEVLLDQKEKENIHLREELHRRNQLQPDPA-KTKALQTVIEMK--DTKISSLERNIRDLEDEVQMLKTNGLLHTEDR 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 639 -DAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQAD-------LEKELQLAFQEISKLSALVDGK 710
Cdd:pfam10174 271 eEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDckqhievLKESLTAKEQRAAILQTEVDAL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 711 GLLSNlELEKRITDLQKELNKEVEEKETLQKEVHllsELKSLPSEVETLRRELHEKSEELCVITTEREKlfsEMAHKDSR 790
Cdd:pfam10174 351 RLRLE-EKESFLNKKTKQLQDLTEEKSTLAGEIR---DLKDMLDVKERKINVLQKKIENLQEQLRDKDK---QLAGLKER 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 791 IQGLLEEIGNTkdDLAASQLSQRSSDEEcQALKSLHVELKHRQEEVLEESERVKQELsqktQELAQKTAEGQEMLNQMEE 870
Cdd:pfam10174 424 VKSLQTDSSNT--DTALTTLEEALSEKE-RIIERLKEQREREDRERLEELESLKKEN----KDLKEKVSALQPELTEKES 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 871 LREKLERRDSSLQSAEKEKNLLTEKLQQTLEevraltQEKNDLKQLQESLQTERDQlrsdiQDTVNMNIDTQEQLLNALE 950
Cdd:pfam10174 497 SLIDLKEHASSLASSGLKKDSKLKSLEIAVE------QKKEECSKLENQLKKAHNA-----EEAVRTNPEINDRIRLLEQ 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 951 SLKQHQETINmlkmKATEEMSDHLPI-KGREGSSDEVEQKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQEN 1029
Cdd:pfam10174 566 EVARYKEESG----KAQAEVERLLGIlREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1030 SRLQQTLESIIAEKEqlkmdLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHVTekseelSRAHERLAEIEEKLKEK 1109
Cdd:pfam10174 642 RRREDNLADNSQQLQ-----LEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLT------NLRAERRKQLEEILEMK 710
|
..
gi 1958755386 1110 NE 1111
Cdd:pfam10174 711 QE 712
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
834-936 |
4.82e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 39.49 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 834 EEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKnlLTEKLQQTLEEVRALTQekndl 913
Cdd:smart00935 7 QKILQESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREK--KEKELQKKVQEFQRKQQ----- 79
|
90 100
....*....|....*....|...
gi 1958755386 914 kQLQESLQTERDQLRSDIQDTVN 936
Cdd:smart00935 80 -KLQQDLQKRQQEELQKILDKIN 101
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
840-1215 |
4.82e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 840 SERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLerrdsslQSAEKEKNLLTEKLQQTLEEVRALTQEKndlkqlqES 919
Cdd:PLN02939 102 MQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMI-------QNAEKNILLLNQARLQALEDLEKILTEK-------EA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 920 LQTERDQLRSDIQDT-VNMNIDTQEQLlnaleslkqHQETINMLKMKATEEMSDHLPIKGREGSSDEVEqkLDGIDEENL 998
Cdd:PLN02939 168 LQGKINILEMRLSETdARIKLAAQEKI---------HVEILEEQLEKLRNELLIRGATEGLCVHSLSKE--LDVLKEENM 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 999 LAESahtvvgsgedhgeteeqrKIDSLLQENSRLQQTLESI-IAEKEQLKMDlkeniemsvenqEELRILRDELkrqqeI 1077
Cdd:PLN02939 237 LLKD------------------DIQFLKAELIEVAETEERVfKLEKERSLLD------------ASLRELESKF-----I 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1078 AAQEK--DHVTEKSEELSRAHERLAEIEEKLKEKNEfrNQALALERveterlelAQKLHENYEKMESITKERNDLKELQE 1155
Cdd:PLN02939 282 VAQEDvsKLSPLQYDCWWEKVENLQDLLDRATNQVE--KAALVLDQ--------NQDLRDKVDKLEASLKEANVSKFSSY 351
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1156 SFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSiSEKEAQASSTQD 1215
Cdd:PLN02939 352 KVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE-SKKRSLEHPADD 410
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
653-927 |
5.71e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 653 ELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAfqeisklsalvdgkGLLSNLELEKRITDLQKELNKE 732
Cdd:COG3096 840 ALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQA--------------NLLADETLADRLEELREELDAA 905
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 733 VEEK-------ETLQKEVHLLSELKSLPSEVETLRRELHEKSEELcviTTEREKLFSemahkdsriqglLEEIGNTKDDL 805
Cdd:COG3096 906 QEAQafiqqhgKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQ---RRLKQQIFA------------LSEVVQRRPHF 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 806 ----AASQLSQRSSDEEcqalkSLHVELKHRQEEVLEESERVKQ---ELSQKTQELAQ-------KTAEGQEMLNQMEEL 871
Cdd:COG3096 971 syedAVGLLGENSDLNE-----KLRARLEQAEEARREAREQLRQaqaQYSQYNQVLASlkssrdaKQQTLQELEQELEEL 1045
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958755386 872 ------------REKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEkndLKQLQESLQTERDQL 927
Cdd:COG3096 1046 gvqadaeaeeraRIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKR---LRKAERDYKQEREQV 1110
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1531-1796 |
5.89e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1531 KSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQVKADLRETMDQMEQLKEQLEAQNSTLESIEIEK 1610
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1611 LKLTQQLNENLKEMTLVAKENDDLKIMDEALREERDQLRESLRQTEASDLEKQEKLRIAHLDLKEHQETIERLMGSVAKR 1690
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1691 TEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGETKKQLKEQGLALSKIEMENLNLAQQIHQNLEEMKSISKE 1770
Cdd:COG4372 191 EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVE 270
|
250 260
....*....|....*....|....*.
gi 1958755386 1771 RDDLKRMEEILRMEKDQLKDSLREAK 1796
Cdd:COG4372 271 KDTEEEELEIAALELEALEEAALELK 296
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
759-915 |
6.03e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 759 LRRELHEKSEELCVITTEreklFSEMAHKDSriqglLEEIGNT--KDDLAASQLSQRSSDEECQALKSLHVELKHRQEEV 836
Cdd:PRK09039 44 LSREISGKDSALDRLNSQ----IAELADLLS-----LERQGNQdlQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 837 LEESERVKQELSQKTQELAQKTAEgQEMLN-QMEELREKLERRDSSLQSAEK---EKNLLTEKLQQTLEEvrALTQEKND 912
Cdd:PRK09039 115 EGRAGELAQELDSEKQVSARALAQ-VELLNqQIAALRRQLAALEAALDASEKrdrESQAKIADLGRRLNV--ALAQRVQE 191
|
...
gi 1958755386 913 LKQ 915
Cdd:PRK09039 192 LNR 194
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
1498-1732 |
6.05e-03 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 40.86 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1498 LNQQLEAQKSSLEKVEMQNVNLTQRLNETLEEMKSVAKERDELRSVEERLTADRDQLKKSLEETITKNQELQEKGHQLSQ 1577
Cdd:pfam06008 17 INYNLENLTKQLQEYLSPENAHKIQIEILEKELSSLAQETEELQKKATQTLAKAQQVNAESERTLGHAKELAEAIKNLID 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1578 vkaDLRETMDQMEQL-KEQLEAQNSTLEsieiEKLKLTQQLNENLKEMTLVA-KENDDLKIMDEALREERDQLRESLRQT 1655
Cdd:pfam06008 97 ---NIKEINEKVATLgENDFALPSSDLS----RMLAEAQRMLGEIRSRDFGTqLQNAEAELKAAQDLLSRIQTWFQSPQE 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958755386 1656 EASDLEKQEKLRIAhlDLKEHQETIERLMGSVAKRTEEVSDMNMELERANTRLQEKVQELKASELQLLKSKVEAGET 1732
Cdd:pfam06008 170 ENKALANALRDSLA--EYEAKLSDLRELLREAAAKTRDANRLNLANQANLREFQRKKEEVSEQKNQLEETLKTARDS 244
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1498-1607 |
6.86e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 6.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1498 LNQQLEAQKSSLEKVEMQNVNLTQRL------NETLEEmkSVAKERDELRSVEerltADRDQLKKSLEETITKNQELQEK 1571
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADLLslerqgNQDLQD--SVANLRASLSAAE----AERSRLQALLAELAGAGAAAEGR 117
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1958755386 1572 GHQLSQVKADLR----ETMDQMEQLKEQLEAQNSTLESIE 1607
Cdd:PRK09039 118 AGELAQELDSEKqvsaRALAQVELLNQQIAALRRQLAALE 157
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
617-822 |
7.34e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 617 SEATEDLKQAMRTLSDLDTVALDAKRESAFLRSENLELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLA 696
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 697 FQEISKLSALVDGKGLLSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCV---- 772
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAllae 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958755386 773 ITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQAL 822
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1034-1198 |
7.37e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1034 QTLESIIAEKEQLKMDLKENIEmsvENQEELRILRDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFR 1113
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELA---ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1114 NQALALERVETERLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQ 1193
Cdd:COG1579 90 EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
....*
gi 1958755386 1194 EIIKE 1198
Cdd:COG1579 170 AKIPP 174
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
828-1247 |
8.74e-03 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 41.05 E-value: 8.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 828 ELKHRQEEVLEESERVKQELSQKTQELAQKTAEGQEMLNQMEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALT 907
Cdd:COG5278 111 ELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEIRARLLLLALALAALLLAAAALLLLLLALAALLALAE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 908 QEKNDLKQLQESLQTERDQLRSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVE 987
Cdd:COG5278 191 LLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALALALLLAALLLALLAALALAALLAAALLAL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 988 QKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLKMDLKENIEMSVENQEELRIL 1067
Cdd:COG5278 271 AALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAAAAALAALLALALATALAAAAAALALLAAL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1068 RDELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFRNQALALERVETERLELAQKLHENYEKMESITKER 1147
Cdd:COG5278 351 LAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAE 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1148 NDLKELQESFEIEKKQLKEYAREMESAGLQTKEQLNIAHANLKEYQEIIKELRGSISEKEAQASSTQDTGKTNPASQGET 1227
Cdd:COG5278 431 ALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALAAAAAALAEAEAAAALAAAAALSLALALAALLL 510
|
410 420
....*....|....*....|
gi 1958755386 1228 PVPREQELLPDAEEARASAE 1247
Cdd:COG5278 511 AAAEAALAAALAAALASAEL 530
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1021-1123 |
8.89e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1021 KIDSLLQENSRLQQTLESIIAEKEQLKmdlKENIEMSVEN----QEELRILRDELKRQQEIAAQEKDHVTE---KSEELS 1093
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALK---KEQDEASFERlaelRDELAELEEELEALKARWEAEKELIEEiqeLKEELE 481
|
90 100 110
....*....|....*....|....*....|
gi 1958755386 1094 RAHERLAEIEEKLKEKNEFRNQALALERVE 1123
Cdd:COG0542 482 QRYGKIPELEKELAELEEELAELAPLLREE 511
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1037-1166 |
9.39e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 1037 ESIIAE-KEQLKMDlKENIEMSVENQEELRIlrdELKRQQEIAAQEKDHVTEKSEELSRAHERLAEIEEKLKEKNEFR-N 1114
Cdd:PRK00409 501 ENIIEEaKKLIGED-KEKLNELIASLEELER---ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEaQ 576
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958755386 1115 QALALERVETE----RLELAQKLHENYEKMESITKERNDLKELQESFEIEKKQLKE 1166
Cdd:PRK00409 577 QAIKEAKKEADeiikELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKE 632
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
817-924 |
9.97e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958755386 817 EECQALKS-LHVELKHRQEEVLEESERVKQE---LSQKTQELAQKTAEgqemlnqMEELREKLERRDSSLQSAEKEKNLL 892
Cdd:PRK12704 64 EEIHKLRNeFEKELRERRNELQKLEKRLLQKeenLDRKLELLEKREEE-------LEKKEKELEQKQQELEKKEEELEEL 136
|
90 100 110
....*....|....*....|....*....|....*
gi 1958755386 893 TEKLQQTLEEVRALTQE--KND-LKQLQESLQTER 924
Cdd:PRK12704 137 IEEQLQELERISGLTAEeaKEIlLEKVEEEARHEA 171
|
|
| |
