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Conserved domains on  [gi|564339519|ref|XP_006233652|]
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chloride intracellular channel protein 3 isoform X1 [Rattus norvegicus]

Protein Classification

glutathione S-transferase; glutathione S-transferase omega( domain architecture ID 10221772)

glutathione S-transferase (GST) catalyzes the conjugation of reduced glutathione to a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress; similar to class-delta/epsilon GSTs which play major roles in insecticide resistance| class-omega glutathione S-transferase (GST) catalyzes the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins than GSTs

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GST_C_CLIC3 cd10299
C-terminal, alpha helical domain of Chloride Intracellular Channel 3; Glutathione ...
69-201 2.39e-87

C-terminal, alpha helical domain of Chloride Intracellular Channel 3; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 3 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC3 is highly expressed in placental tissues, and may play a role in fetal development.


:

Pssm-ID: 198332  Cd Length: 133  Bit Score: 253.15  E-value: 2.39e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  69 YRESNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHELAQEPHLSESRRRFLDGDQLTLADCSLL 148
Cdd:cd10299    1 YKESNTAGNDVFHKFSAFIKNPVPAQDDALQKKLLRALLKLDSYLLTPLPHELAQNPHLSESQRRFLDGDALTLADCNLL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 564339519 149 PKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQ 201
Cdd:cd10299   81 PKLHIVKVVCKHYRQFEIPAELKGVTRYLDSASQEKEFKYTCPNSAEILLAYR 133
Thioredoxin_like super family cl00388
Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin ...
1-62 4.48e-29

Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX)-like superfamily is a large, diverse group of proteins containing a TRX fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include the families of TRX, protein disulfide isomerase (PDI), tlpA, glutaredoxin, NrdH redoxin, and bacterial Dsb proteins (DsbA, DsbC, DsbG, DsbE, DsbDgamma). Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins, glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.


The actual alignment was detected with superfamily member cd03061:

Pssm-ID: 469754  Cd Length: 91  Bit Score: 103.99  E-value: 4.48e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564339519   1 MVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLGPPDF 62
Cdd:cd03061   30 MVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPPKY 91
 
Name Accession Description Interval E-value
GST_C_CLIC3 cd10299
C-terminal, alpha helical domain of Chloride Intracellular Channel 3; Glutathione ...
69-201 2.39e-87

C-terminal, alpha helical domain of Chloride Intracellular Channel 3; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 3 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC3 is highly expressed in placental tissues, and may play a role in fetal development.


Pssm-ID: 198332  Cd Length: 133  Bit Score: 253.15  E-value: 2.39e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  69 YRESNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHELAQEPHLSESRRRFLDGDQLTLADCSLL 148
Cdd:cd10299    1 YKESNTAGNDVFHKFSAFIKNPVPAQDDALQKKLLRALLKLDSYLLTPLPHELAQNPHLSESQRRFLDGDALTLADCNLL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 564339519 149 PKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQ 201
Cdd:cd10299   81 PKLHIVKVVCKHYRQFEIPAELKGVTRYLDSASQEKEFKYTCPNSAEILLAYR 133
O-ClC TIGR00862
intracellular chloride channel protein; The Organellar Chloride Channel (O-ClC) Family (TC 1.A. ...
1-200 9.14e-78

intracellular chloride channel protein; The Organellar Chloride Channel (O-ClC) Family (TC 1.A.12) Proteins of the O-ClC family are voltage-sensitive chloride channels found in intracellular membranes but not the plasma membranes of animal cells. They are found in human nuclear membranes, and the bovine protein targets to the microsomes, but not the plasma membrane, when expressed in Xenopus laevis oocytes. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney. [Transport and binding proteins, Anions]


Pssm-ID: 129941 [Multi-domain]  Cd Length: 236  Bit Score: 232.83  E-value: 9.14e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519    1 MVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLGPPDFPGLAPRYRESNTAGNDIF 80
Cdd:TIGR00862  27 MILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKHPESNTAGLDIF 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519   81 HKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHEL----AQEPHLseSRRRFLDGDQLTLADCSLLPKLHIVDT 156
Cdd:TIGR00862 107 AKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIdedsAEDEKV--SRRKFLDGDELTLADCNLLPKLHIVKV 184
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 564339519  157 VCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAY 200
Cdd:TIGR00862 185 VAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAY 228
GST_N_CLIC cd03061
GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, ...
1-62 4.48e-29

GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLIC1 dimer bears no similarity to GST dimers. The redox-controlled structural rearrangement exposes a large hydrophobic surface, which is masked by dimerization in vitro. In vivo, this surface may represent the docking interface of CLIC1 in its membrane-bound state. The two cysteines in CLIC1 that form the disulfide bond in oxidizing conditions are essential for dimerization and chloride channel activity, however, in other subfamily members, the second cysteine is not conserved.


Pssm-ID: 239359  Cd Length: 91  Bit Score: 103.99  E-value: 4.48e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564339519   1 MVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLGPPDF 62
Cdd:cd03061   30 MVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPPKY 91
PLN02817 PLN02817
glutathione dehydrogenase (ascorbate)
6-204 9.48e-16

glutathione dehydrogenase (ascorbate)


Pssm-ID: 166458 [Multi-domain]  Cd Length: 265  Bit Score: 73.49  E-value: 9.48e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519   6 KGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLgpPDFPGLAPRyrESNTAGNDIFHKFSA 85
Cdd:PLN02817  86 KHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKY--PDPPLATPP--EKASVGSKIFSTFIG 161
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  86 FIKNPVPTqdDALYQQLLRALTRLDRYLgtpldhelaqephlsESRRRFLDGDQLTLADCSLLPKLHIVDTVCAHFRQRP 165
Cdd:PLN02817 162 FLKSKDPG--DGTEQALLDELTSFDDYI---------------KENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWS 224
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 564339519 166 IPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQPAV 204
Cdd:PLN02817 225 VPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPKV 263
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
1-165 2.42e-09

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 54.90  E-value: 2.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519   1 MVLLLKGVPFTLTTVDTRRALDVLKDFA---PGSQLPILLYDGDVKTDTLQIEEFLEET-----LGPPDFPGLApRYRE- 71
Cdd:COG0625   18 IALEEKGLPYELVPVDLAKGEQKSPEFLalnPLGKVPVLVDDGLVLTESLAILEYLAERypeppLLPADPAARA-RVRQw 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  72 ----SNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGtpldhelaqephlsesRRRFLDGDQLTLADCSL 147
Cdd:COG0625   97 lawaDGDLHPALRNLLERLAPEKDPAAIARARAELARLLAVLEARLA----------------GGPYLAGDRFSIADIAL 160
                        170
                 ....*....|....*...
gi 564339519 148 LPKLHIVDTVCAHFRQRP 165
Cdd:COG0625  161 APVLRRLDRLGLDLADYP 178
GST_N_2 pfam13409
Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.
1-56 1.93e-07

Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.


Pssm-ID: 433184 [Multi-domain]  Cd Length: 68  Bit Score: 46.47  E-value: 1.93e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 564339519    1 MVLLLKGVPFTLTTVDT--RRALDVLKDFAPGSQLPIL-LYDGDVKTDTLQIEEFLEET 56
Cdd:pfam13409  10 LALEEKGLPYEIELVDLdpKDKPPELLALNPLGTVPVLvLPDGTVLTDSLVILEYLEEL 68
GST_C_2 pfam13410
Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.
96-178 2.02e-05

Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.


Pssm-ID: 433185 [Multi-domain]  Cd Length: 67  Bit Score: 41.15  E-value: 2.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519   96 DALYQQLLRALTRLDRYLGtpldhelaqephlsesRRRFLDGDQLTLADCSLLPKLHIVDTVcahFRQRPIPAELSCVRR 175
Cdd:pfam13410   3 ERAREQLRAALDALEARLA----------------DGPGLLGDRPTLADIALAPVLARLDAA---YPGLDLREGYPRLRA 63

                  ...
gi 564339519  176 YLD 178
Cdd:pfam13410  64 WLE 66
PRK15113 PRK15113
glutathione transferase;
6-71 1.11e-03

glutathione transferase;


Pssm-ID: 185068 [Multi-domain]  Cd Length: 214  Bit Score: 38.79  E-value: 1.11e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564339519   6 KGVPFTLTTVDtrraLDVLKDFAPGSQ-------LPILLYDGDVKTDTLQIEEFLEETLGPPDFPGLAPRYRE 71
Cdd:PRK15113  29 KGLPFELKTVD----LDAGEHLQPTYQgysltrrVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPADLQ 97
 
Name Accession Description Interval E-value
GST_C_CLIC3 cd10299
C-terminal, alpha helical domain of Chloride Intracellular Channel 3; Glutathione ...
69-201 2.39e-87

C-terminal, alpha helical domain of Chloride Intracellular Channel 3; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 3 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC3 is highly expressed in placental tissues, and may play a role in fetal development.


Pssm-ID: 198332  Cd Length: 133  Bit Score: 253.15  E-value: 2.39e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  69 YRESNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHELAQEPHLSESRRRFLDGDQLTLADCSLL 148
Cdd:cd10299    1 YKESNTAGNDVFHKFSAFIKNPVPAQDDALQKKLLRALLKLDSYLLTPLPHELAQNPHLSESQRRFLDGDALTLADCNLL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 564339519 149 PKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQ 201
Cdd:cd10299   81 PKLHIVKVVCKHYRQFEIPAELKGVTRYLDSASQEKEFKYTCPNSAEILLAYR 133
O-ClC TIGR00862
intracellular chloride channel protein; The Organellar Chloride Channel (O-ClC) Family (TC 1.A. ...
1-200 9.14e-78

intracellular chloride channel protein; The Organellar Chloride Channel (O-ClC) Family (TC 1.A.12) Proteins of the O-ClC family are voltage-sensitive chloride channels found in intracellular membranes but not the plasma membranes of animal cells. They are found in human nuclear membranes, and the bovine protein targets to the microsomes, but not the plasma membrane, when expressed in Xenopus laevis oocytes. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney. [Transport and binding proteins, Anions]


Pssm-ID: 129941 [Multi-domain]  Cd Length: 236  Bit Score: 232.83  E-value: 9.14e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519    1 MVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLGPPDFPGLAPRYRESNTAGNDIF 80
Cdd:TIGR00862  27 MILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKHPESNTAGLDIF 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519   81 HKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHEL----AQEPHLseSRRRFLDGDQLTLADCSLLPKLHIVDT 156
Cdd:TIGR00862 107 AKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIdedsAEDEKV--SRRKFLDGDELTLADCNLLPKLHIVKV 184
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 564339519  157 VCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAY 200
Cdd:TIGR00862 185 VAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAY 228
GST_C_CLIC cd03198
C-terminal, alpha helical domain of Chloride Intracellular Channels; Glutathione S-transferase ...
69-201 1.57e-52

C-terminal, alpha helical domain of Chloride Intracellular Channels; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLICs (CLIC1-6 in vertebrates), p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. Biochemical studies of the Caenorhabditis elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. CLICs display structural plasticity, with CLIC1 adopting two soluble conformations. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLIC1 dimer bears no similarity to GST dimers. The redox-controlled structural rearrangement exposes a large hydrophobic surface, which is masked by dimerization in vitro. In vivo, this surface may represent the docking interface of CLIC1 in its membrane-bound state. The two cysteines in CLIC1 that form the disulfide bond in oxidizing conditions are essential for dimerization and chloride channel activity, however, in other subfamily members, the second cysteine is not conserved.


Pssm-ID: 198307  Cd Length: 119  Bit Score: 164.70  E-value: 1.57e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  69 YRESNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLgtpldhelaqephlSESRRRFLDGDQLTLADCSLL 148
Cdd:cd03198    1 NPEANTAGEDLFAKFSAYIKNKDPAADEALRKALLKELSKLDAYL--------------SSSSRKFLDGDTLTLADCNLL 66
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 564339519 149 PKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQ 201
Cdd:cd03198   67 PKLHHIRVAGKAYKDFDIPDDFTGLWRYLKNAYETDEFTKTCPADQEIILHYK 119
GST_C_CLIC1 cd10300
C-terminal, alpha helical domain of Chloride Intracellular Channel 1; Glutathione ...
71-201 2.00e-49

C-terminal, alpha helical domain of Chloride Intracellular Channel 1; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 1 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Soluble CLIC1 is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLIC1 dimer bears no similarity to GST dimers. The redox-controlled structural rearrangement exposes a large hydrophobic surface, which is masked by dimerization in vitro. In vivo, this surface may represent the docking interface of CLIC1 in its membrane-bound state. The two cysteines in CLIC1 that form the disulfide bond in oxidizing conditions are essential for dimerization and chloride channel activity. CLIC1 is widely expressed in many tissues and its subcellular localization is dependent on cell type and cell cycle phase. It acts as a sensor of cell oxidation and appears to have a role in diseases that involve oxidative stress including tumorigenic and neurodegenerative diseases.


Pssm-ID: 198333  Cd Length: 139  Bit Score: 157.41  E-value: 2.00e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  71 ESNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHELAQEPHLSE--SRRRFLDGDQLTLADCSLL 148
Cdd:cd10300    3 ESNTAGLDVFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDENSAEDEgvSQRKFLDGNELTLADCNLL 82
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 564339519 149 PKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQ 201
Cdd:cd10300   83 PKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEIELAYE 135
GST_C_CLIC5 cd10297
C-terminal, alpha helical domain of Chloride Intracellular Channel 5; Glutathione ...
69-201 1.21e-48

C-terminal, alpha helical domain of Chloride Intracellular Channel 5; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 5 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC5 exists in two alternatively-spliced isoforms, CLIC5A or CLIC5B (also called p64). It is expressed at high levels in hair cell stereocilia and is associated with the actin cytoskeleton and ezrin. A recessive mutation in the CLIC5 gene in mice led to the lack of coordination and deafness, due to a defect in the basal region of the hair bundle causing stereocilia to degrade. CLIC5 is therefore essential for normal inner ear function. CLIC5 is also highly expressed in podocytes where it is colocalized with the ezrin/radixin/moesin (ERM) complex. It is essential for foot process integrity, and for podocyte morphology and function.


Pssm-ID: 198330  Cd Length: 141  Bit Score: 155.51  E-value: 1.21e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  69 YRESNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHELAQEPHLSE--SRRRFLDGDQLTLADCS 146
Cdd:cd10297    1 HRESNTAGIDIFSKFSAYIKNTKQQANAALEKGLTKALKKLDDYLNTPLPEEIDADSTEEEkvSNRKFLDGDELTLADCN 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564339519 147 LLPKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQ 201
Cdd:cd10297   81 LLPKLHVVKIVAKKYRNFEIPSDMTGVWRYLKNAYARDEFTNTCAADKEIELAYA 135
GST_C_CLIC4 cd10296
C-terminal, alpha helical domain of Chloride Intracellular Channel 4; Glutathione ...
71-200 4.91e-45

C-terminal, alpha helical domain of Chloride Intracellular Channel 4; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 4 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC4, also known as p64H1, is expressed ubiquitously and its localization varies depending on the nature of the cells and tissues, from the plasma membrane to subcellular compartments including the nucleus, mitochondria, ER, and the trans-Golgi network, among others. In response to cellular stress such as DNA damage and senescence, cytoplasmic CLIC4 translocates to the nucleus, where it acts on the TGF-beta pathway. Studies on knockout mice suggest that CLIC4 also plays an important role in angiogenesis, specifically in network formation, capillary sprouting, and lumen formation. CLIC4 has been found to induce apoptosis in several cell types and to retard the growth of grafted tumors in vivo.


Pssm-ID: 198329  Cd Length: 141  Bit Score: 146.32  E-value: 4.91e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  71 ESNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHELAQEP--HLSESRRRFLDGDQLTLADCSLL 148
Cdd:cd10296    3 ESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSmeDIKFSTRKFLDGNEMTLADCNLL 82
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 564339519 149 PKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAY 200
Cdd:cd10296   83 PKLHIVKVVAKKYRNFEIPKEMTGIWRYLSNAYSRDEFTNTCPSDKEIEIAY 134
GST_C_CLIC6 cd10301
C-terminal, alpha helical domain of Chloride Intracellular Channel 6; Glutathione ...
71-200 2.24e-44

C-terminal, alpha helical domain of Chloride Intracellular Channel 6; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 6 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC6 is expressed predominantly in the stomach, pituitary, and brain. It interacts with D2-like dopamine receptors directly and through scaffolding proteins. CLIC6 may be involved in the regulation of secretion, possibly through chloride ion transport regulation.


Pssm-ID: 198334  Cd Length: 140  Bit Score: 144.78  E-value: 2.24e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  71 ESNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTPLDHELA--QEPHLSESRRRFLDGDQLTLADCSLL 148
Cdd:cd10301    3 ESNSAGNDVFAKFSAFIKNPRKDANENLEKNLLKALRKLDNYLNTPLPDEIDaySTEDITVSDRKFLDGNELTLADCNLL 82
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 564339519 149 PKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAY 200
Cdd:cd10301   83 PKLHIIKVVAKKYRNFEFPTEMTGIWRYLNNAYARDEFTNTCPADQEIEYAY 134
GST_C_CLIC2 cd10298
C-terminal, alpha helical domain of Chloride Intracellular Channel 2; Glutathione ...
69-200 8.30e-39

C-terminal, alpha helical domain of Chloride Intracellular Channel 2; Glutathione S-transferase (GST) C-terminal domain family, Chloride Intracellular Channel (CLIC) 2 subfamily; CLICs are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes, and they may play roles in the maintenance of these intracellular membranes. The membrane localization domain is present in the N-terminal part of the protein. Structures of soluble CLICs reveal that they adopt a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. CLIC2 contains an intramolecular disulfide bond and exists as a monomer regardless of redox conditions, in contrast to CLIC1 which forms a dimer under oxidizing conditions. It is expressed in most tissues except the brain, and is highly expressed in the lung, spleen, and in cardiac and skeletal muscles. CLIC2 interacts with ryanodine receptors (cardiac RyR2 and skeletal RyR1) and modulates their activity, suggesting that CLIC2 may function in the regulation of calcium release and signaling in cardiac and skeletal muscles.


Pssm-ID: 198331  Cd Length: 138  Bit Score: 130.38  E-value: 8.30e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  69 YRESNTAGNDIFHKFSAFIKNPvPTQDDALYQQLLRALTRLDRYLGTPLDHELAQEP--HLSESRRRFLDGDQLTLADCS 146
Cdd:cd10298    1 YKESFDVGSDIFAKFSAYIKNS-PENNANQEKALLREFKRLDDYLNTPLPEEIDHDSaeNITVSKRKFLDGDRLTLADCN 79
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 564339519 147 LLPKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAY 200
Cdd:cd10298   80 LLPKLHVIKVAAKKYCDFDIPADFTGVWRYLNNAYEREEFSQTCPADIEIEKAY 133
GST_N_CLIC cd03061
GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, ...
1-62 4.48e-29

GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLIC1 dimer bears no similarity to GST dimers. The redox-controlled structural rearrangement exposes a large hydrophobic surface, which is masked by dimerization in vitro. In vivo, this surface may represent the docking interface of CLIC1 in its membrane-bound state. The two cysteines in CLIC1 that form the disulfide bond in oxidizing conditions are essential for dimerization and chloride channel activity, however, in other subfamily members, the second cysteine is not conserved.


Pssm-ID: 239359  Cd Length: 91  Bit Score: 103.99  E-value: 4.48e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564339519   1 MVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLGPPDF 62
Cdd:cd03061   30 MVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPPKY 91
PLN02817 PLN02817
glutathione dehydrogenase (ascorbate)
6-204 9.48e-16

glutathione dehydrogenase (ascorbate)


Pssm-ID: 166458 [Multi-domain]  Cd Length: 265  Bit Score: 73.49  E-value: 9.48e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519   6 KGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLgpPDFPGLAPRyrESNTAGNDIFHKFSA 85
Cdd:PLN02817  86 KHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKY--PDPPLATPP--EKASVGSKIFSTFIG 161
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  86 FIKNPVPTqdDALYQQLLRALTRLDRYLgtpldhelaqephlsESRRRFLDGDQLTLADCSLLPKLHIVDTVCAHFRQRP 165
Cdd:PLN02817 162 FLKSKDPG--DGTEQALLDELTSFDDYI---------------KENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWS 224
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 564339519 166 IPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQPAV 204
Cdd:PLN02817 225 VPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPKV 263
PLN02378 PLN02378
glutathione S-transferase DHAR1
26-206 1.06e-11

glutathione S-transferase DHAR1


Pssm-ID: 166019 [Multi-domain]  Cd Length: 213  Bit Score: 61.65  E-value: 1.06e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  26 DFAPGSQLPILLYDGDVKTDTLQIEEFLEETLgpPDFPGLAPRyrESNTAGNDIFHKFSAFIKNPvpTQDDALYQQLLRA 105
Cdd:PLN02378  53 DISPQGKVPVLKIDDKWVTDSDVIVGILEEKY--PDPPLKTPA--EFASVGSNIFGTFGTFLKSK--DSNDGSEHALLVE 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519 106 LTRLdrylgtpldhelaqEPHLSESRRRFLDGDQLTLADCSLLPKLHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKE 185
Cdd:PLN02378 127 LEAL--------------ENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDS 192
                        170       180
                 ....*....|....*....|.
gi 564339519 186 FKYTCPHSAEILAAYQPAVHP 206
Cdd:PLN02378 193 FEKTKTEEKYVISGWAPKVNP 213
GST_C_DHAR cd03201
C-terminal, alpha helical domain of Dehydroascorbate Reductase; Glutathione S-transferase (GST) ...
71-202 1.20e-11

C-terminal, alpha helical domain of Dehydroascorbate Reductase; Glutathione S-transferase (GST) C-terminal domain family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, which are monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.


Pssm-ID: 198310  Cd Length: 121  Bit Score: 59.35  E-value: 1.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  71 ESNTAGNDIFHKFSAFIKNPVPtqDDALYQQLLRALTRLDRYLGTpldhelaQEPhlsesrrrFLDGDQLTLADCSLLPK 150
Cdd:cd03201    6 EFASVGSKIFSTFVTFLKSKDA--NDGSEQALLDELTALDEHLKT-------NGP--------FIAGEKITAVDLSLAPK 68
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 564339519 151 LHIVDTVCAHFRQRPIPAELSCVRRYLDSALQEKEFKYTCPHSAEILAAYQP 202
Cdd:cd03201   69 LYHLRVALGHYKGWSVPESLTAVHKYMELLFSRESFKKTKAPDEMIIAGWAP 120
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
1-165 2.42e-09

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 54.90  E-value: 2.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519   1 MVLLLKGVPFTLTTVDTRRALDVLKDFA---PGSQLPILLYDGDVKTDTLQIEEFLEET-----LGPPDFPGLApRYRE- 71
Cdd:COG0625   18 IALEEKGLPYELVPVDLAKGEQKSPEFLalnPLGKVPVLVDDGLVLTESLAILEYLAERypeppLLPADPAARA-RVRQw 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  72 ----SNTAGNDIFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGtpldhelaqephlsesRRRFLDGDQLTLADCSL 147
Cdd:COG0625   97 lawaDGDLHPALRNLLERLAPEKDPAAIARARAELARLLAVLEARLA----------------GGPYLAGDRFSIADIAL 160
                        170
                 ....*....|....*...
gi 564339519 148 LPKLHIVDTVCAHFRQRP 165
Cdd:COG0625  161 APVLRRLDRLGLDLADYP 178
GST_N_2 pfam13409
Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.
1-56 1.93e-07

Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.


Pssm-ID: 433184 [Multi-domain]  Cd Length: 68  Bit Score: 46.47  E-value: 1.93e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 564339519    1 MVLLLKGVPFTLTTVDT--RRALDVLKDFAPGSQLPIL-LYDGDVKTDTLQIEEFLEET 56
Cdd:pfam13409  10 LALEEKGLPYEIELVDLdpKDKPPELLALNPLGTVPVLvLPDGTVLTDSLVILEYLEEL 68
GST_C_2 pfam13410
Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.
96-178 2.02e-05

Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.


Pssm-ID: 433185 [Multi-domain]  Cd Length: 67  Bit Score: 41.15  E-value: 2.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519   96 DALYQQLLRALTRLDRYLGtpldhelaqephlsesRRRFLDGDQLTLADCSLLPKLHIVDTVcahFRQRPIPAELSCVRR 175
Cdd:pfam13410   3 ERAREQLRAALDALEARLA----------------DGPGLLGDRPTLADIALAPVLARLDAA---YPGLDLREGYPRLRA 63

                  ...
gi 564339519  176 YLD 178
Cdd:pfam13410  64 WLE 66
GST_N_family cd00570
Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic ...
1-54 4.40e-05

Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxin 2 and stringent starvation protein A.


Pssm-ID: 238319 [Multi-domain]  Cd Length: 71  Bit Score: 40.25  E-value: 4.40e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564339519   1 MVLLLKGVPFTLTTVD-TRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLE 54
Cdd:cd00570   17 LALEEKGLPYELVPVDlGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71
GST_C_family cd00299
C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione ...
79-178 4.09e-04

C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases.


Pssm-ID: 198286 [Multi-domain]  Cd Length: 100  Bit Score: 38.25  E-value: 4.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519  79 IFHKFSAFIKNPVPTQDDALYQQLLRALTRLDRYLGTpldhelaqephlsesrRRFLDGDQLTLADCSLLPKLHIVDTVC 158
Cdd:cd00299   18 RLLYLEKVPLPKDEAAVEAAREELPALLAALEQLLAG----------------RPYLAGDQFSLADVALAPVLARLEALG 81
                         90       100
                 ....*....|....*....|
gi 564339519 159 AHFRqrpIPAELSCVRRYLD 178
Cdd:cd00299   82 PYYD---LLDEYPRLKAWYD 98
PRK15113 PRK15113
glutathione transferase;
6-71 1.11e-03

glutathione transferase;


Pssm-ID: 185068 [Multi-domain]  Cd Length: 214  Bit Score: 38.79  E-value: 1.11e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564339519   6 KGVPFTLTTVDtrraLDVLKDFAPGSQ-------LPILLYDGDVKTDTLQIEEFLEETLGPPDFPGLAPRYRE 71
Cdd:PRK15113  29 KGLPFELKTVD----LDAGEHLQPTYQgysltrrVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPADLQ 97
GST_N_3 pfam13417
Glutathione S-transferase, N-terminal domain;
1-60 6.90e-03

Glutathione S-transferase, N-terminal domain;


Pssm-ID: 433190 [Multi-domain]  Cd Length: 75  Bit Score: 34.13  E-value: 6.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564339519    1 MVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETLGPP 60
Cdd:pfam13417  15 IALNEKGLPYEFVPIPPGDHPPELLAKNPLGKVPVLEDDGGILCESLAIIDYLEELYPGP 74
GST_N_1 cd03043
GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from ...
3-53 7.99e-03

GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.


Pssm-ID: 239341 [Multi-domain]  Cd Length: 73  Bit Score: 34.11  E-value: 7.99e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564339519   3 LLLK--GVPFT-----LTTVDTRralDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFL 53
Cdd:cd03043   18 LLLKaaGIPFEeilvpLYTPDTR---ARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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