|
Name |
Accession |
Description |
Interval |
E-value |
| CHAT |
pfam12770 |
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ... |
1384-1707 |
1.94e-55 |
|
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.
Pssm-ID: 432771 [Multi-domain] Cd Length: 287 Bit Score: 195.67 E-value: 1.94e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1384 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYLVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskghL 1463
Cdd:pfam12770 1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1464 RKTPPTYSSSTAMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSMATKERVMSAL-TQAECIHF 1539
Cdd:pfam12770 70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1540 ATHVSWKL-----SALVLTPNTEGNpasskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1613
Cdd:pfam12770 146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1614 LVVLSSSQEANS-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKAVQSSKA 1692
Cdd:pfam12770 189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268
|
330
....*....|....*....
gi 564380019 1693 ----FSHPSNWAGFTLIGN 1707
Cdd:pfam12770 269 rekpRHHPYYWAGFVLVGD 287
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
941-1707 |
5.71e-37 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 151.27 E-value: 5.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 941 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1020
Cdd:COG4995 11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1021 AEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTLSYSSLGRTHHALQNYSQAVMYLQEGLRL 1100
Cdd:COG4995 91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1101 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1180
Cdd:COG4995 171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1181 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFHEHYLG 1260
Cdd:COG4995 246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1261 DNSVESSSDFQAGSSAALPIATSSTLEQHIASVREALGVESYYSRACASSETESEAGDIVEQQLEEMNKQLNSVTDPTGF 1340
Cdd:COG4995 326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1341 LRMVRHNNLLHRSCQSmTSLFSGTVSPSKDGTSSLPRRQNSLAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLVLVLE 1420
Cdd:COG4995 406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1421 GELYLVPFALLKgSASNEYLYERFTLIAVPAVRSLGPHSKGHLRKTPPtyssstamAAVIGNPKLPSAvmdrwlWGPMPS 1500
Cdd:COG4995 475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1501 AEEEAYMVSELL-GCQPLVGSMATKERVMSALTQAECIHFATHvswklsalvltpnteGNPASSKSSFGHPYTIPESLRv 1579
Cdd:COG4995 540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATH---------------GLFDPDNPLRSGLLLADGLLT- 603
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1580 qddASDVESISDCPPlrellltaadlldlrlsvKLVVLSSSQEANSRV-TADGLVALTRAFLAAGAQCVLVALWPVPVAA 1658
Cdd:COG4995 604 ---AYELAQLDLSPA------------------ELVVLSACETGLGDVrGGEGVLGLARAFLYAGARSVVASLWSVDDEA 662
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 564380019 1659 SKMFVHAFYSSLLNGLKASASLGEAMKAVQSSKAFSHPSNWAGFTLIGN 1707
Cdd:COG4995 663 TAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
509-768 |
7.00e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 111.64 E-value: 7.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 509 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 588
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 589 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 668
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 669 KAYCNLGLAFKALLNFTKAEEC-QKYLLSLAQSLDNSQAKFRALGNLGDIFVCKKDVNGAIKFYEQQLGLSHHVKDRRLE 747
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250 260
....*....|....*....|.
gi 564380019 748 ASAYAALGTAYRMVQKYDKAL 768
Cdd:COG0457 225 LALALLLALRLAALALYQYRA 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
34-931 |
7.97e-26 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 116.72 E-value: 7.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 34 AKTIIQRSPDEPALSKAEFVE-KVRQSNQACHDGDFHTAIALYNEALAVDPQNciLYSNRSAAYMKTQQ--YHKALDDAV 110
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALID 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 111 KARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKmKLDKSPF 190
Cdd:TIGR02917 184 EVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 191 vVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSAlSSAHWSLGNTEKSTGYMQQ------DLDVAKTLgdq 264
Cdd:TIGR02917 263 -AHYLKALVDFQKKNYEDARETLQDALKSAPEYLP---ALLLA-GASEYQLGNLEQAYQYLNQilkyapNSHQARRL--- 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 265 tgecrahgnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDD 344
Cdd:TIGR02917 335 ---------LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELD 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 345 LSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGskreeaRAYSNLGSAYHYRRNFDKAMSyhncvlELAQELTEK 424
Cdd:TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA------AAKKLEKKQ 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 425 PIEMRAYAGLGHAARCMQDLERARQYHEQQLSIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCI 497
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRA 535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 498 AQELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnI 577
Cdd:TIGR02917 536 ILALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------I 589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 578 ARELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLA 656
Cdd:TIGR02917 590 LNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALE 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 657 LAKDlHDKLSQAKAycnlglafkallNFTKAEECQKYLLSLAQSLDNSQAKfRALGN--LGDIFVCKKDVNGAIKFYEQQ 734
Cdd:TIGR02917 664 LKPD-NTEAQIGLA------------QLLLAAKRTESAKKIAKSLQKQHPK-AALGFelEGDLYLRQKDYPAAIQAYRKA 729
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 735 LglshhvkdrRLEASAYAA--LGTAYRMVQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYQ 812
Cdd:TIGR02917 730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 813 EQLElgrklKEPSlEAQVYGNMGITKMNMNVVEdAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 892
Cdd:TIGR02917 795 TVVK-----KAPD-NAVVLNNLAWLYLELKDPR-ALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858
|
890 900 910 920
....*....|....*....|....*....|....*....|
gi 564380019 893 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQAL 931
Cdd:TIGR02917 859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
869-1131 |
3.11e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 107.01 E-value: 3.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 869 DRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeAS 948
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYE------KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ----ALEL--DP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 949 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETdnpt 1028
Cdd:COG0457 74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD---- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1029 cqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTLSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 1108
Cdd:COG0457 144 --ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
250 260
....*....|....*....|...
gi 564380019 1109 DEAKIRHGLGLSLWASGNLEEAQ 1131
Cdd:COG0457 222 LLLLALALLLALRLAALALYQYR 244
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
394-681 |
1.59e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 102.89 E-value: 1.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 394 LGSAYHYRRNFDKAMSYHNCVLELAQELTEkpiemrAYAGLGHAARCMQDLERARQYHEQQLSIAEDlkdraaEGRASSN 473
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVE------AHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 474 LGIIHQMKGDYDTALKLHKThlciAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGN 553
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEK----LLELDPDDAE--ALRLLAEIYEQEGDWEKAIEVLERLLKLG------PENAHAYCE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 554 LAVAYQALGAHDRALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHN 633
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP------ALPR 217
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 564380019 634 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCNLGLAFKAL 681
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAAL 265
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
785-994 |
2.12e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.54 E-value: 2.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 785 PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVVEDAIGYFEQQLAMlqqlsgn 864
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 865 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHEL 944
Cdd:COG0457 72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564380019 945 geASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 994
Cdd:COG0457 140 --DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
421-714 |
9.48e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 97.00 E-value: 9.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 421 LTEKPIEMRAYAGLGHAARCMQDLERARQYHEQQLSIAEDLkdraaegrassnlgiihqmkgdydtalklhkthlciaqe 500
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--------------------------------------- 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 501 lsdyaaqGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 580
Cdd:COG0457 42 -------AEALYNLGLAYLRLGRYEEALADYEQALEL------DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 581 LrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 660
Cdd:COG0457 109 D------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALA 176
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 564380019 661 LHDKLSQAKAYCNLGLAFKALLNFTKAEECQKYLLSLAQSLDNSQAKFRALGNL 714
Cdd:COG0457 177 ALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
587-829 |
2.94e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.46 E-value: 2.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 587 EARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQdlALAKDLHDkls 666
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDD--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 667 qAKAYCNLGLAFKALLNFTKAEECqkyllsLAQSLDNSQAKFRALGNLGDIFVCKKDVNGAIKFYEQQLGLSHHVkdrrl 746
Cdd:COG0457 76 -AEALNNLGLALQALGRYEEALED------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD----- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 747 eASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLpgECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSL 826
Cdd:COG0457 144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA--AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
...
gi 564380019 827 EAQ 829
Cdd:COG0457 221 ELL 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
344-591 |
3.77e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.07 E-value: 3.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 344 DLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIakdlgsKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELTE 423
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 424 kpiemrAYAGLGHAARCMQDLERARQYHEQQLSIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 503
Cdd:COG0457 78 ------ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 504 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 583
Cdd:COG0457 146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
|
....*...
gi 564380019 584 IQSEARAL 591
Cdd:COG0457 218 ALAELLLL 225
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
798-1099 |
6.44e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.18 E-value: 6.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 798 YMALGKYTMAFKCYQEQLELGRKLKEPSLE-AQVYGNMGItkmnmnvVEDAIGYFEQQLAMLQQlsgnesvldRGRAYGN 876
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALELDPETVEAHLAlGNLYRRRGE-------YDRAIRIHQKLLERDPD---------RAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 877 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvahELGEASNKAQAYGE 956
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDP------DDAEALRLLAEIYEQEGDWEKAIEVLER------LLKLGPENAHAYCE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 957 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYhqldLQIAEETDNPTCQgrAYGN 1036
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLP--ALPR 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 1037 LGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAktlsyssLGRTHHALQNYSQAVMYLQEGLR 1099
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALELDPSDDLLLA-------LADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
510-816 |
1.55e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.03 E-value: 1.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 510 AYGNMGNAYNAL--GMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 587
Cdd:COG2956 8 ALGWYFKGLNYLlnGQPDKAIDLLEEALELD------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 588 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQ 667
Cdd:COG2956 76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------N 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 668 AKAYCNLGLAFKALLNFTKAEECqkyllsLAQSLDNSQAKFRALGNLGDIFVCKKDVNGAIKFYEQQLGLSHHvkdrrlE 747
Cdd:COG2956 144 AHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD------Y 211
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564380019 748 ASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLE 816
Cdd:COG2956 212 LPALPRLAELYEKLGDPEEA-------LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
634-931 |
2.14e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.64 E-value: 2.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 634 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFTKAEEcqkYLLSLaqsLDNSQAKFRALGN 713
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 714 LGDIFVCKKDVNGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALgyhtqelEVYQELSDL-PGECRAHG 792
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 793 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLE-AQVYgnmgitkMNMNVVEDAIGYFEQqlaMLQQLSGNESVLDRg 871
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLlAELY-------LEQGDYEEAIAALER---ALEQDPDYLPALPR- 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 872 raygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQAL 931
Cdd:COG2956 218 -----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
338-1144 |
2.39e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 99.00 E-value: 2.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 338 AKQSKDDLSEARELgnMGAVYIAMGDFENAvqchEQHLRIAKDLGSKREEARAYsnLGSAYHYRRNFDKamsyhncVLEL 417
Cdd:TIGR02917 48 ALQKDPNDAEARFL--LGKIYLALGDYAAA----EKELRKALSLGYPKNQVLPL--LARAYLLQGKFQQ-------VLDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 418 AQELTEKPIEMRA--YAGLGHAARCMQDLERARQYHEQQLSIAEDlkdraaegRASSNLGI--IHQMKGDYDTALKLHKT 493
Cdd:TIGR02917 113 LPGKTLLDDEGAAelLALRGLAYLGLGQLELAQKSYEQALAIDPR--------SLYAKLGLaqLALAENRFDEARALIDE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 494 HLCIAQELSD-YAAQGRAYGNMGNAYNALGMYDQAVK-------YHRQELQISMEVNdRASQASTHGN--LAVAYQALGA 563
Cdd:TIGR02917 185 VLTADPGNVDaLLLKGDLLLSLGNIELALAAYRKAIAlrpnniaVLLALATILIEAG-EFEEAEKHADalLKKAPNSPLA 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 564 HD-RALQHYQNHlNIARELRDIQSEAR-------ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLG 635
Cdd:TIGR02917 264 HYlKALVDFQKK-NYEDARETLQDALKsapeylpALLLAGASEYQLGNLEQAYQYLNQILKYAP-------------NSH 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 636 YAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQ-AKAYCNLGLAFKALLNFTKAEEcqkyLLSLAQSLDNSQAKFRAlgNL 714
Cdd:TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLDPDdPAALSLLGEAYLALGDFEKAAE----YLAKATELDPENAAART--QL 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 715 GDIFVCKKDVNGAIKFYEQQLGLSHHVKDRRLeasayaALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHL 794
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGRADL------LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLL 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 795 AAVYMALGKYTMAfkcyQEQLELGRKLKEPSLEAQVY-GNMGITKMNmnvVEDAIGYFE-------------QQLAMLQQ 860
Cdd:TIGR02917 472 GAIYLGKGDLAKA----REAFEKALSIEPDFFPAAANlARIDIQEGN---PDDAIQRFEkvltidpknlraiLALAGLYL 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 861 LSGNES--VLDRGRAYGNLGDCYE---ALGDYEEAIKYYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQALVCF 934
Cdd:TIGR02917 545 RTGNEEeaVAWLEKAAELNPQEIEpalALAQYYLGKGQLKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSF 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 935 EKRlvvaheLGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-Y 1013
Cdd:TIGR02917 625 KKL------LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiA 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1014 HQLDLQIAEEtdnptcqgrAYGN--LGLTYESLGTFERAVVYQEQHLSIAAQmNDLVAKtlsyssLGRTHHALQNYSQAV 1091
Cdd:TIGR02917 693 KSLQKQHPKA---------ALGFelEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAV 756
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 564380019 1092 MylqeglRLAEQLGRREDEAKIRHGLglslwasGNLEEAQHQLYRASALFETI 1144
Cdd:TIGR02917 757 K------TLEAWLKTHPNDAVLRTAL-------AELYLAQKDYDKAIKHYQTV 796
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
310-569 |
2.50e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 92.76 E-value: 2.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 310 ALSSLGHVYTAIGDYPNALASHKQCVLLakqskdDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeAR 389
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 390 AYSNLGSAYHYRRNFDKAMSYHNCVLELAQELTEkpiemrAYAGLGHAARCMQDLERARQYHEQQLSIAEDLKDraaegr 469
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 470 ASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS 549
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
|
250 260
....*....|....*....|
gi 564380019 550 THGNLAVAYQALGAHDRALQ 569
Cdd:COG0457 226 ALALLLALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
877-1176 |
1.25e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 91.33 E-value: 1.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 877 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLvvahelGEASNKAQAYGE 956
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDP------ETVEAHLALGNLYRRRGEYDRAIRIHQKLL------ERDPDRAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 957 LGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQldlQIAEETDNPTcqgRAYGN 1036
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLE---RLLKLGPENA---HAYCE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1037 LGLTYESLGTFERAVVYQEQHLSIAAqmNDLVAktlsYSSLGRTHHALQNYSQAVMYLQEGLRLAeqlgrrEDEAKIRHG 1116
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDP--DCARA----LLLLAELYLEQGDYEEAIAALERALEQD------PDYLPALPR 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1117 LGLSLWASGNLEEAQHQLYRAsalfetIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSL 1176
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKA------LELDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
410-673 |
1.66e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.83 E-value: 1.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 410 YHNCVLELAQELTEKPIEMRAYAGLGHAARCMQDLERARQYHEQQLSI---AEDLKDRAAEGRASSNLGIIHQMKGDYDT 486
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaAAAAAALLLLAALLELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 487 ALklhkTHLCIAQELS-DYAAqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHD 565
Cdd:COG3914 97 AL----ALYRRALALNpDNAE---ALFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 566 RALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQ 645
Cdd:COG3914 164 EAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD------AHSNLLFALRQACDWE 231
|
250 260
....*....|....*....|....*...
gi 564380019 646 EAVKYYEQDLALAKDLHDKLSQAKAYCN 673
Cdd:COG3914 232 VYDRFEELLAALARGPSELSPFALLYLP 259
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
554-856 |
5.74e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.40 E-value: 5.74e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 554 LAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHN 633
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 634 LGYAHYCLGNYQEAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFTKAEECQKYLLSLAQslDNSQAKFRalgn 713
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEK--LLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--ENAHAYCE---- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 714 LGDIFVCKKDVNGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 792
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALP 216
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564380019 793 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLEAQVYgnmgitkMNMNVVEDAIGYFEQQLA 856
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-------ERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
714-1013 |
7.98e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.02 E-value: 7.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 714 LGDIFVCKKDVNGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSdlpgecRAHGH 793
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 794 LAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVVEDAIGYFEQqlamLQQLSGNESvldrgRA 873
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLER----LLKLGPENA-----HA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 874 YGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHElgeasnKAQA 953
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLPA 214
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 954 YGELGSLHSQLGNYEQAISCLERQLNIARDmkdraleSDAACGLGGVYQQMGEYDTALQY 1013
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKALELDPS-------DDLLLALADLLERKEGLEAALAL 267
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
386-656 |
3.09e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.40 E-value: 3.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 386 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELTEkpiemrAYAGLGHAARCMQDLERARQYHEQQLSIAEDLKDra 465
Cdd:COG2956 40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAE------ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE-- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 466 aegrASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDRA 545
Cdd:COG2956 112 ----ALRLLAEIYEQEGDWEKAIEVLER----LLKLGPENAH--AYCELAELYLEQGDYDEAIEA----LEKALKLDPDC 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 546 SQASThgNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 625
Cdd:COG2956 178 ARALL--LLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
|
250 260 270
....*....|....*....|....*....|.
gi 564380019 626 gegkvchNLGYAHYCLGNYQEAVKYYEQDLA 656
Cdd:COG2956 250 -------ALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
270-536 |
6.94e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.54 E-value: 6.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 270 AHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQCVllakQSKDDLSEAR 349
Cdd:COG2956 44 AHLALGNLYRRRGEYDRAIRIHQK----LLERDPDRAE--ALLELAQDYLKAGLLDRAEELLEKLL----ELDPDDAEAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 350 ELgnMGAVYIAMGDFENAVQCHEQHLRIAKdlgskrEEARAYSNLGSAYHYRRNFDKAMSYhncvleLAQELTEKPIEMR 429
Cdd:COG2956 114 RL--LAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 430 AYAGLGHAARCMQDLERARQYHEQQLSIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 509
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
250 260
....*....|....*....|....*..
gi 564380019 510 aygnmgnAYNALGMYDQAVKYHRQELQ 536
Cdd:COG2956 254 -------LLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
992-1262 |
4.63e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 77.35 E-value: 4.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 992 DAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtdnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMndlvakT 1071
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1072 LSYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqls 1151
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERA-------------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1152 tdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVL 1231
Cdd:COG0457 137 ----LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
250 260 270
....*....|....*....|....*....|.
gi 564380019 1232 YYSLAAGYLYSWLLAPGAGILKFHEHYLGDN 1262
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAALALYQY 243
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
66-160 |
2.72e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.04 E-value: 2.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG0457 22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101
|
90
....*....|....*
gi 564380019 146 GLAQDPKSLQLLVGM 160
Cdd:COG0457 102 ALELDPDDAEALYNL 116
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
66-182 |
1.61e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 72.73 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG0457 56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135
|
90 100 110
....*....|....*....|....*....|....*..
gi 564380019 146 GLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQK 182
Cdd:COG0457 136 ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
234-488 |
2.07e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 72.35 E-value: 2.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 234 LSSAHWSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSS 313
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQ----ALELDPDDAE--ALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 314 LGHVYTAIGDYPNALASHKQcvllAKQSKDDLSEAreLGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSN 393
Cdd:COG0457 82 LGLALQALGRYEEALEDYDK----ALELDPDDAEA--LYNLGLALLELGRYDEAIEAYERALELDPDD------ADALYN 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 394 LGSAYHYRRNFDKAMSYHNCVLELAQELTEKPIEMRAYAGLGHAARCMQDLERARQYHEQQLSIAEDLKDRAAEGRASSN 473
Cdd:COG0457 150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
250
....*....|....*
gi 564380019 474 LGIIHQMKGDYDTAL 488
Cdd:COG0457 230 LLALRLAALALYQYR 244
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
358-586 |
2.11e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.80 E-value: 2.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 358 YIAMGDFENAVQCHEQHLRIAkdlgskREEARAYSNLGSAYHYRRNFDKAM---SYHNCVLELAQELTEKPIEMRAYAGL 434
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAE------LEAAALAAALGLALLLLAALAEAAaaaLLALAAGEAAAAAAALLLLAALLELA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 435 GHAARCMQDLERARQYHEQQLSIAEDLKDraaegrASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDyaaqgrAYGNM 514
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564380019 515 GNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQS 586
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALEL------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
744-1034 |
4.18e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.03 E-value: 4.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 744 RRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKE 823
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 824 PSLEAQvygnmgitkmNMNVVEDAIGYFEQQLAMlqqlsgNEsvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqs 903
Cdd:COG3914 84 AALLLQ----------ALGRYEEALALYRRALAL------NP---DNAEALFNLGNLLLALGRLEEALAALRRALALN-- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 904 lnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 983
Cdd:COG3914 143 ----PDFAEAYLNLGEALRRLGRLEEAIAALRR----ALEL--DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 564380019 984 mkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPTCQGRAY 1034
Cdd:COG3914 213 ------NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
731-898 |
8.50e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 8.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 731 YEQQLGLSHHVKDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFK 809
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALnPDNAEALFNLGNLLLALGRLEEALA 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 810 CYQEQLELgrklkEPSLeAQVYGNMGITKMNMNVVEDAIGYFEQQLAMLqqlsgnesvLDRGRAYGNLGDCYEALGDYEE 889
Cdd:COG3914 134 ALRRALAL-----NPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELD---------PDNAEALNNLGNALQDLGRLEE 198
|
....*....
gi 564380019 890 AIKYYEQYL 898
Cdd:COG3914 199 AIAAYRRAL 207
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
57-151 |
1.09e-12 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 72.13 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 57 RQSNQACHDGDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRH 136
Cdd:PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86
|
90
....*....|....*
gi 564380019 137 ADALAAFASGLAQDP 151
Cdd:PLN03088 87 QTAKAALEKGASLAP 101
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
526-733 |
1.61e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.10 E-value: 1.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 526 QAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQ---SEARALSNLGNFHCSRG 602
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAallLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 603 EYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLGLAFKALL 682
Cdd:COG3914 93 RYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564380019 683 NFTKAEECqkYLLSLAQSLDNSQakfrALGNLGDIFVCKKDVNGAIKFYEQ 733
Cdd:COG3914 161 RLEEAIAA--LRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAYRR 205
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
66-190 |
1.91e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.72 E-value: 1.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG3914 126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 564380019 146 GLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKMKLD---KSPF 190
Cdd:COG3914 206 ALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGpseLSPF 253
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
554-825 |
3.66e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.95 E-value: 3.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 554 LAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHN 633
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 634 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDklsqakAYCNLGLAFKALLNFTKAEECqkYLLSLAQSLDNSQakfrALGN 713
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAA--LRRALALNPDFAE----AYLN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 714 LGDIFVCKKDVNGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 792
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEA-------IAAYRRALELdPDNADAHS 218
|
250 260 270
....*....|....*....|....*....|...
gi 564380019 793 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPS 825
Cdd:COG3914 219 NLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
54-186 |
2.10e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 2.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 54 EKVRQSNQACHDGDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYL 133
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564380019 134 GRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKMKLD 186
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
66-160 |
2.44e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.25 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
90
....*....|....*
gi 564380019 146 GLAQDPKSLQLLVGM 160
Cdd:COG3914 172 ALELDPDNAEALNNL 186
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
748-899 |
3.08e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.29 E-value: 3.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 748 ASAYAALGTAYRMVQKYDKALgyhtqelEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepsl 826
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAE-------ALLEKALELdPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD------ 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 827 EAQVYGNMGITKMNMNVVEDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLS 899
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
64-153 |
4.81e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.90 E-value: 4.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 64 HDGDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 143
Cdd:COG4783 50 QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
90
....*....|
gi 564380019 144 ASGLAQDPKS 153
Cdd:COG4783 130 EKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
66-151 |
4.90e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.06 E-value: 4.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
....*.
gi 564380019 146 GLAQDP 151
Cdd:COG5010 148 ALGTSP 153
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
839-1142 |
9.26e-11 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 65.80 E-value: 9.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 839 MNMNVVEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 918
Cdd:pfam17874 12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 919 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 995
Cdd:pfam17874 88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 996 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 1056
Cdd:pfam17874 167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1057 HLSIAAqmndlvaktlsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 1136
Cdd:pfam17874 242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305
|
....*.
gi 564380019 1137 ASALFE 1142
Cdd:pfam17874 306 ALSLAE 311
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
498-660 |
1.70e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.98 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 498 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndrasqastHGNLAVAYQALGAHDRALQHYQNhlni 577
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------FALLGEILLQLGDLDEAIVLLHE---- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 578 ARELRdiQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 657
Cdd:COG4783 64 ALELD--PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
...
gi 564380019 658 AKD 660
Cdd:COG4783 136 DPD 138
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
66-150 |
1.89e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.49 E-value: 1.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
....*
gi 564380019 146 GLAQD 150
Cdd:COG0457 170 LEAAA 174
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
79-353 |
1.92e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.49 E-value: 1.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 79 LAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLV 158
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 159 GMveaamkspmrdtleptyqqlqkmkldkspfvvvsvvGQELLTAGHHGASVVVLEAALKIGTCSLKlrgsVFSALSSAH 238
Cdd:COG0457 81 NL------------------------------------GLALQALGRYEEALEDYDKALELDPDDAE----ALYNLGLAL 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 239 WSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVY 318
Cdd:COG0457 121 LELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194
|
250 260 270
....*....|....*....|....*....|....*
gi 564380019 319 TAIGDYPNALASHKQCVLLAKQSKDDLSEARELGN 353
Cdd:COG0457 195 VLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
66-155 |
1.99e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.41 E-value: 1.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALdDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84
|
90
....*....|
gi 564380019 146 GLAQDPKSLQ 155
Cdd:COG3063 85 ALELDPSALR 94
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
877-1023 |
3.22e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 3.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 877 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeASNKAQAYGE 956
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHE----ALEL--DPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564380019 957 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1023
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
828-903 |
4.49e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 57.78 E-value: 4.49e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564380019 828 AQVYGNMGITKMNMNVVEDAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 903
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
498-659 |
4.73e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.36 E-value: 4.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 498 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNI 577
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 578 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLAL 657
Cdd:COG5010 84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------AYSNLAALLLSLGQDDEAKAALQRALGT 151
|
..
gi 564380019 658 AK 659
Cdd:COG5010 152 SP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
869-991 |
6.93e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.25 E-value: 6.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 869 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHelgeas 948
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALDP------ 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 564380019 949 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIA-RDMKDRALES 991
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEA 126
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
66-218 |
8.45e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.05 E-value: 8.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG2956 124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 146 GLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKMKLDKSPFVVVSVVgqeLLTAGHHGASVVVLEAALK 218
Cdd:COG2956 204 ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL---LERKEGLEAALALLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
941-1140 |
1.35e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.47 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 941 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1020
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1021 aeetdNPTCqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMndlvakTLSYSSLGRTHHALQNYSQAVMYLQEGLRL 1100
Cdd:COG3914 108 -----NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALEL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 564380019 1101 AEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1140
Cdd:COG3914 176 DP------DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
799-1249 |
1.38e-09 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 64.11 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 799 MALGKYTMAFKCYQEQLELGRKLKEPSLEAQVYGNMGITKMNMNVVEDAIGYFEQQL-AMLQQLSGNESVLDR---GRAY 874
Cdd:COG3899 716 LARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALaARALAALAALRHGNPpasARAY 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 875 GNLGDCYeaLGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHELGEASNKAQAY 954
Cdd:COG3899 796 ANLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLAL 873
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 955 GELGSLHSQLGNYEQAISCLERQLNIARDM------KDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT 1028
Cdd:COG3899 874 AAAAAAAAAAAALAAAAAAAARLLAAAAAAlaaaaaAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1029 CQGRAYGNLGLTYESLgTFERAVVYQEQHLSIAAQMNDLVAKTLSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 1108
Cdd:COG3899 954 LAAALALAAAAAAAAA-AALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1109 DEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSLGHHDEALAVAER 1188
Cdd:COG3899 1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564380019 1189 GRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGA 1249
Cdd:COG3899 1113 ALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALALLLLALAALALAA 1173
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
95-376 |
1.53e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 61.28 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 95 AYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLE 174
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 175 PTYQQLQKMKLDKSPfvVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLKLRgsvfSALSSAHWSLGNTEKSTGYMQQD 254
Cdd:COG2956 97 ELLEKLLELDPDDAE--ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 255 LDVAKTLGdqtgecRAHGNLGSAFFSKGNYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQC 334
Cdd:COG2956 171 LKLDPDCA------RALLLLAELYLEQGDYEEAIA------ALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 564380019 335 VLLAKQSKDDLSEARelgnmgaVYIAMGDFENAVQCHEQHLR 376
Cdd:COG2956 239 LELDPSDDLLLALAD-------LLERKEGLEAALALLERQLR 273
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
557-663 |
1.62e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.72 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 557 AYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYyEQYLRLAPDlqdmegEGKVCHNLGY 636
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 564380019 637 AHYCLGNYQEAVKYYEQDLALAKDLHD 663
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
465-620 |
1.94e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 1.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 465 AAEGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDR 544
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLE------KALELDPDNPEAFALLGEILLQLGDLDEAIVL----LHEALELDPD 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564380019 545 ASQAstHGNLAVAYQALGAHDRALQHYQnhlniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 620
Cdd:COG4783 71 EPEA--RLNLGLALLKAGDYDEALALLE------KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
509-580 |
2.17e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.86 E-value: 2.17e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564380019 509 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 580
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
42-490 |
2.56e-09 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 62.69 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 42 PDEPalSKAEFVEKVRQS---------NQACHDGDFHTAIALYNEALAVDPqNCILYSNRSAAYMKTQQYHKALDDAVKA 112
Cdd:TIGR00990 110 IDES--SVANLSEEERKKyaaklkekgNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAA 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 113 RLLNPKWPKAYFRQGVALQYLGRHADALAAF-ASGLAQDPKSLQlLVGMVEAAMKSPMRDTLEPTYQQLQKmKLDKSPFV 191
Cdd:TIGR00990 187 LELDPDYSKALNRRANAYDGLGKYADALLDLtASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE-NLPSVTFV 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 192 --VVSVVGQELLTAGHHGAsvVVLEAALKIGTCSLKLRgsvfSALSSAHWSLgntEKSTGYMQQDLDVAKtLGDQtgECR 269
Cdd:TIGR00990 265 gnYLQSFRPKPRPAGLEDS--NELDEETGNGQLQLGLK----SPESKADESY---EEAARAFEKALDLGK-LGEK--EAI 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 270 AHGNLGSAFFSKGNYREALTNhrhqLVLAMKLKDREAAS-----SALSSLGHVYTAIGDYPNALAS---------HKQCV 335
Cdd:TIGR00990 333 ALNLRGTFKCLKGKHLEALAD----LSKSIELDPRVTQSyikraSMNLELGDPDKAEEDFDKALKLnsedpdiyyHRAQL 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 336 LLAKQSKD----DLSEARELGNMGAV-YIAMGdfenavqCHEQHL-RIAKDLGSKREEARAYSNLGSAYHY-------RR 402
Cdd:TIGR00990 409 HFIKGEFAqagkDYQKSIDLDPDFIFsHIQLG-------VTQYKEgSIASSMATFRRCKKNFPEAPDVYNYygellldQN 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 403 NFDKAMSYHNCVLELAQELteKPIEMRAYAGLGHAA---RCMQDLERARQYHEQQLSIAEDlKDRAAEGRASSNLgiihq 479
Cdd:TIGR00990 482 KFDEAIEKFDTAIELEKET--KPMYMNVLPLINKALalfQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLL----- 553
|
490
....*....|.
gi 564380019 480 MKGDYDTALKL 490
Cdd:TIGR00990 554 QQGDVDEALKL 564
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
951-1023 |
3.23e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.47 E-value: 3.23e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564380019 951 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1023
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
360-618 |
5.02e-09 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 62.18 E-value: 5.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 360 AMGDFENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLEL-------AQELTEKPIEMRAYA 432
Cdd:COG3899 717 ARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYA 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 433 GLGHAARcmQDLERARQYHEQQLSIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYG 512
Cdd:COG3899 797 NLGLLLL--GDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 513 nMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALS 592
Cdd:COG3899 875 -AAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953
|
250 260
....*....|....*....|....*.
gi 564380019 593 NLGNFHCSRGEYVQAAPYYEQYLRLA 618
Cdd:COG3899 954 LAAALALAAAAAAAAAAALAAAAAAA 979
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
386-540 |
6.06e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.74 E-value: 6.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 386 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAqeltekPIEMRAYAGLGHAARCMQDLERARQYHEQQLSIAEDlkdra 465
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELD------PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564380019 466 aEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISME 540
Cdd:COG4783 71 -EPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
351-420 |
7.14e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.32 E-value: 7.14e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564380019 351 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKR--EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 420
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
948-1101 |
7.28e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 7.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 948 SNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQ-YHQLdlqIAEETDN 1026
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVlLHEA---LELDPDE 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564380019 1027 PtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLvaktlsYSSLGRTHHALQNYSQAVMYLQEGLRLA 1101
Cdd:COG4783 72 P----EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
546-620 |
7.95e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.32 E-value: 7.95e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564380019 546 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 620
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
543-689 |
9.37e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.51 E-value: 9.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 543 DRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlq 622
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564380019 623 dmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFTKAEE 689
Cdd:COG5010 87 ----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKA 143
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
66-153 |
1.20e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG4235 31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110
|
....*...
gi 564380019 146 GLAQDPKS 153
Cdd:COG4235 111 LLALLPAD 118
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
303-579 |
1.21e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 303 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDlg 382
Cdd:COG3914 33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD-- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 383 skreEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELTEkpiemrAYAGLGHAARCMQDLERARQYHEQQLSIAEDLk 462
Cdd:COG3914 111 ----NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLEEAIAALRRALELDPDN- 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 463 draAEgrASSNLGIIHQMKGDYDTALKlhktHLCIAQELSdyAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevn 542
Cdd:COG3914 180 ---AE--ALNNLGNALQDLGRLEEAIA----AYRRALELD--PDNADAHSNLLFALRQACDWEVYDRFEELLAAL----- 243
|
250 260 270
....*....|....*....|....*....|....*..
gi 564380019 543 drASQASTHGNLAVAYQalgAHDRALQHYQNHLNIAR 579
Cdd:COG3914 244 --ARGPSELSPFALLYL---PDDDPAELLALARAWAQ 275
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
517-623 |
1.22e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 517 AYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQhYQNHLNIARElrdiqsEARALSNLGN 596
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 564380019 597 FHCSRGEYVQAAPYYEQYLRLAPDLQD 623
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
374-668 |
1.59e-08 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 60.26 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 374 HLRIAKDlgskREEARAYsNLGSAYHYRRN--FDKAMSYHNCVLELAQELTEKPIEMRAYAGLGHAARCMQDLERARQYH 451
Cdd:COG3899 694 HLNRAGE----RDRAARL-LLRAARRALARgaYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALL 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 452 EQQLSI-------AEDLKDRAAEGRASSNLGIIhqMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMY 524
Cdd:COG3899 769 ERALAAralaalaALRHGNPPASARAYANLGLL--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPL 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 525 DQAVKYHRQELQISMEVNDRA------SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFH 598
Cdd:COG3899 847 REALELLREALEAGLETGDAAlallalAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAA 926
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 599 CSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQA 668
Cdd:COG3899 927 AAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
543-1140 |
1.72e-08 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 60.26 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 543 DRASQASTHGNLAVAYQALGAHDRALQHYQ--NHLNIARELRDIqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 620
Cdd:COG3899 661 PPEERRALHRRIARALEARGPEPLEERLFElaHHLNRAGERDRA---ARLLLRAARRALARGAYAEALRYLERALELLPP 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 621 LQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL-------AKDLHDKLSQAKAYCNLGLAFkaLLNFTKAEECQKY 693
Cdd:COG3899 738 DPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGLLL--LGDYEEAYEFGEL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 694 LLSLAQSLDNSQAKFRALGNLGDIFVCKKDVNGAIKFYEQQLGLSHHVKDRRLEASAYAALGTAYRMVQkyDKALGYHTQ 773
Cdd:COG3899 816 ALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAA--ALAAAAAAA 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 774 ELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLEAQvygnmgitkmnmnvvEDAIGYFEQ 853
Cdd:COG3899 894 ARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAA---------------AAAALAAAL 958
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 854 QLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVC 933
Cdd:COG3899 959 ALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLA 1038
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 934 FEKRLVVAHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 1013
Cdd:COG3899 1039 AAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAA 1118
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1014 HQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVyQEQHLSIAAQMNDLVAKTLSYSSLGRTHHALQNYSQAVMY 1093
Cdd:COG3899 1119 ALAALALAAAARAAAALLLLAAALALALAALLLLAALLL-ALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLA 1197
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 564380019 1094 LQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1140
Cdd:COG3899 1198 ALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALRLLA 1244
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
123-495 |
2.07e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.82 E-value: 2.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 123 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVgmveaamkspmrdtleptyqqlqkmkldkspfvvvsvvgqellt 202
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL-------------------------------------------- 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 203 aghhgasvvvleaalkigtcslklrgsvfsALSSAHWSLGNTEKSTGYMQQDLDVAKTLGdqtgecRAHGNLGSAFFSKG 282
Cdd:COG2956 47 ------------------------------ALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLELAQDYLKAG 90
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 283 NYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDDLSEARELGNMGAVYIAMG 362
Cdd:COG2956 91 LLDRAEE------LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIE------VLERLLKLGPENAHAYCELAELYLEQG 158
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 363 DFENAVQCHEQHLRIAKDLgskreeARAYSNLGSAYHYRRNFDKAMSYhncvleLAQELTEKPIEMRAYAGLGHAARCMQ 442
Cdd:COG2956 159 DYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAA------LERALEQDPDYLPALPRLAELYEKLG 226
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 564380019 443 DLERARQYHEQQLSIAEDLKDRAAegrassnLGIIHQMKGDYDTALKLHKTHL 495
Cdd:COG2956 227 DPEEALELLRKALELDPSDDLLLA-------LADLLERKEGLEAALALLERQL 272
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
307-380 |
2.72e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 52.77 E-value: 2.72e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564380019 307 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 380
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
828-984 |
4.33e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.04 E-value: 4.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 828 AQVYGNMGITKMNMNVVEDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 907
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----- 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564380019 908 qDQAKAYRGLGNGHRATGSLQQALVCFEKRLvvahelGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 984
Cdd:COG4783 70 -DEPEARLNLGLALLKAGDYDEALALLEKAL------KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
66-219 |
4.37e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.05 E-value: 4.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564380019 146 GLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLqkMKLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKI 219
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERA--LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
880-983 |
4.41e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 880 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRATGSLQQALVcFEKrlvvAHELgeASNKAQAYGELGS 959
Cdd:COG3063 1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67
|
90 100
....*....|....*....|....
gi 564380019 960 LHSQLGNYEQAISCLERQLNIARD 983
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
951-1188 |
5.58e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.47 E-value: 5.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 951 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLggvYQQMGEYDTALQYHQLDLQIAEETDNPTCQ 1030
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLL---LAALAEAAAAALLALAAGEAAAAAAALLLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1031 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDlvaktlSYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDE 1110
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNP------DF 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564380019 1111 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETiRHEAqlstdyklslfdlqtssYQALQRVLVSLGHHDEALAVAER 1188
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPD-NAEA-----------------LNNLGNALQDLGRLEEAIAAYRR 205
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
469-537 |
1.08e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 51.23 E-value: 1.08e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564380019 469 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 537
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
869-983 |
1.22e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 50.85 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 869 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLnrmqdqakayrgLGNGHRATgslqqalvcfekrlvvahelgeas 948
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRL------------LGPDHPLT------------------------ 44
|
90 100 110
....*....|....*....|....*....|....*
gi 564380019 949 nkAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 983
Cdd:pfam13424 45 --ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
779-901 |
1.38e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 779 QELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELgrklkEPSlEAQVYGNMGITKMNMNVVEDAIGYFEQqlaML 858
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPD-NADALLDLAEALLAAGDTEEAEELLER---AL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 564380019 859 QQLSGNEsvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 901
Cdd:COG4235 79 ALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
508-620 |
1.74e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 1.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 508 GRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 587
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLD------PDNADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84
|
90 100 110
....*....|....*....|....*....|...
gi 564380019 588 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 620
Cdd:COG4235 85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
386-460 |
1.76e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 50.46 E-value: 1.76e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564380019 386 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQEL--TEKPIEMRAYAGLGHAARCMQDLERARQYHEQQLSIAED 460
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
71-166 |
1.94e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 71 AIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 150
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90
....*....|....*.
gi 564380019 151 PKSLQLLVGMVEAAMK 166
Cdd:COG4235 82 PDNPEALYLLGLAAFQ 97
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
284-618 |
2.77e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 56.41 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 284 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYiaMGD 363
Cdd:COG3899 728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL--LGD 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 364 FENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELTEKPIEMRAYAGLGHAARCMQD 443
Cdd:COG3899 806 YEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAA 885
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 444 LERARQYHEQQLSIAE------DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNA 517
Cdd:COG3899 886 LAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAA 965
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 518 YNALGmYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNF 597
Cdd:COG3899 966 AAAAA-ALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALA 1044
|
330 340
....*....|....*....|.
gi 564380019 598 HCSRGEYVQAAPYYEQYLRLA 618
Cdd:COG3899 1045 LLAALAAAAAAAAAAAALAAA 1065
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
666-817 |
2.83e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 666 SQAKAYCNLGLAFKALLNFTKAEEcqkyllSLAQSLDNSQAKFRALGNLGDIFVCKKDVNGAIKFYEQQLGLSHHvkdrr 745
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEA------LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564380019 746 lEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYQEQLEL 817
Cdd:COG4783 71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
739-898 |
3.71e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.88 E-value: 3.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 739 HHVKDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELG 818
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 819 RKlkepslEAQVYGNMGITKMNMNVVEDAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYL 898
Cdd:COG5010 85 PN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---------NAYSNLAALLLSLGQDDEAKAALQRAL 149
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
548-658 |
4.32e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 4.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 548 ASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegE 627
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84
|
90 100 110
....*....|....*....|....*....|.
gi 564380019 628 GKVCHNLGYAHYCLGNYQEAVKYYEQDLALA 658
Cdd:COG4235 85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
794-938 |
4.49e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 4.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 794 LAAVYMALGKYTMAFKCYQEQLELgrklkEPSlEAQVYGNMGITKMNMNVVEDAIGYFEQQLAMLQqlsgnesvlDRGRA 873
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPEA 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564380019 874 YGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRL 938
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKALK------LDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
428-500 |
6.05e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 48.92 E-value: 6.05e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564380019 428 MRAYAGLGHAARCMQDLERARQYHEQQLSIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 500
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
510-620 |
1.20e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.83 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 510 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 589
Cdd:PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 564380019 590 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 620
Cdd:PRK02603 108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
295-458 |
1.24e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 295 LVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQH 374
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 375 LRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELteKPIEMRAYAGLGHAARCMQDLERARQYHEQQ 454
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALAL--SPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 564380019 455 LSIA 458
Cdd:COG5010 149 LGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
357-461 |
1.27e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.63 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 357 VYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYhncvlELAQELteKPIEMRAYAGLGH 436
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-----EKALKL--DPNNAEALLNLAE 67
|
90 100
....*....|....*....|....*
gi 564380019 437 AARCMQDLERARQYHEQQLSIAEDL 461
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSA 92
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
305-460 |
1.35e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.81 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 305 EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkddlSEARELgnMGAVYIAMGDFENAVQCHEQHLRIAKDlgsk 384
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFAL--LGEILLQLGDLDEAIVLLHEALELDPD---- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564380019 385 reEARAYSNLGSAYHYRRNFDKAMSYhncvleLAQELTEKPIEMRAYAGLGHAARCMQDLERARQYHEQQLSIAED 460
Cdd:COG4783 71 --EPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
956-1192 |
1.37e-06 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 53.77 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 956 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 1024
Cdd:NF040586 439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1025 -DNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLS-IAAQMNDLVAKTL-SYSSLGRTHHALQNYSQAVMYLQEGLRLA 1101
Cdd:NF040586 514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVLRrRRRVLGPDHPRTLlSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1102 EQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvsLGH 1178
Cdd:NF040586 593 REVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA---LGD 662
|
250
....*....|....
gi 564380019 1179 HDEALAVAERGRTR 1192
Cdd:NF040586 663 ADEARELAREVLDR 676
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
523-757 |
1.41e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 51.84 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 523 MYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE-------ARALSNLG 595
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpdlAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 596 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLG 675
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD------YAYAYLNRG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 676 LAFKALLNFTKAEEcqkyLLSLAQSLDNSQAkFRALgnLGDIFVCKKDVNGAIKFYEQQLGLSHHVKDRRLEASAYAALG 755
Cdd:COG4785 149 IALYYLGRYELAIA----DLEKALELDPNDP-ERAL--WLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221
|
..
gi 564380019 756 TA 757
Cdd:COG4785 222 LA 223
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
993-1063 |
1.50e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 1.50e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 993 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 1063
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
960-1062 |
1.78e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.24 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 960 LHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLdlqIAEETDNPtcqgRAYGNLGL 1039
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA---LKLDPNNA----EALLNLAE 67
|
90 100
....*....|....*....|...
gi 564380019 1040 TYESLGTFERAVVYQEQHLSIAA 1062
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDP 90
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1073-1142 |
2.10e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.38 E-value: 2.10e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564380019 1073 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1142
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
631-664 |
2.19e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 45.99 E-value: 2.19e-06
10 20 30
....*....|....*....|....*....|....
gi 564380019 631 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 664
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
67-166 |
2.84e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 52.69 E-value: 2.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 67 DFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASG 146
Cdd:COG3914 59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138
|
90 100
....*....|....*....|
gi 564380019 147 LAQDPKSLQLLVGMVEAAMK 166
Cdd:COG3914 139 LALNPDFAEAYLNLGEALRR 158
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
953-988 |
3.06e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 45.61 E-value: 3.06e-06
10 20 30
....*....|....*....|....*....|....*.
gi 564380019 953 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 988
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
797-906 |
3.29e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 797 VYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVVEDAIGYfeQQLAMLQQlsgnesvlDRGRAYGN 876
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL--EKALKLDP--------NNAEALLN 64
|
90 100 110
....*....|....*....|....*....|
gi 564380019 877 LGDCYEALGDYEEAIKYYEQYLSVAQSLNR 906
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
634-780 |
3.39e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.65 E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 634 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFTKAEEcqkyllSLAQSLDNSQAKFRALGN 713
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIV------LLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564380019 714 LGDIFVCKKDVNGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYQE 780
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
873-905 |
4.35e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 45.22 E-value: 4.35e-06
10 20 30
....*....|....*....|....*....|...
gi 564380019 873 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 905
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
353-466 |
4.91e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.08 E-value: 4.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 353 NMGAVYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAqeltekPIEMRAYA 432
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALALD------PDNPEALY 89
|
90 100 110
....*....|....*....|....*....|....
gi 564380019 433 GLGHAARCMQDLERARQYHEQQLSIAEDLKDRAA 466
Cdd:COG4235 90 LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
477-583 |
5.52e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 477 IHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRqelqiSMEVNdrASQASTHGNLAV 556
Cdd:COG3063 1 LYLKLGDLEEAEEYYE------KALELDPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAE 67
|
90 100
....*....|....*....|....*..
gi 564380019 557 AYQALGAHDRALQHYQNHLNIARELRD 583
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
415-578 |
6.57e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 6.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 415 LELAQELTEKPIEMRAYAGLGHAARCMQDLERARQYHEQQLSIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTH 494
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 495 LCIAQElsdyaaQGRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNH 574
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 564380019 575 LNIA 578
Cdd:COG5010 149 LGTS 152
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
872-903 |
6.65e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 44.72 E-value: 6.65e-06
10 20 30
....*....|....*....|....*....|..
gi 564380019 872 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 903
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
575-738 |
7.87e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 7.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 575 LNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQD 654
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 655 LALAKDlhdklsQAKAYCNLGLAFKALLNFTKAEEcqkyLLSLAQSLDNSQAkfRALGNLGDIFVCKKDVNGAIKFYEQQ 734
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKE----YYEKALALSPDNP--NAYSNLAALLLSLGQDDEAKAALQRA 148
|
....
gi 564380019 735 LGLS 738
Cdd:COG5010 149 LGTS 152
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
872-903 |
9.82e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 44.31 E-value: 9.82e-06
10 20 30
....*....|....*....|....*....|..
gi 564380019 872 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 903
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
632-700 |
1.20e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.46 E-value: 1.20e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564380019 632 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFTKAEECQKYLLSLAQS 700
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
600-701 |
1.23e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.93 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 600 SRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYyeqDLALAKDLHDklsqAKAYCNLGLAFK 679
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL---EKALKLDPNN----AEALLNLAELLL 70
|
90 100
....*....|....*....|..
gi 564380019 680 ALLNFTKAEECQKYLLSLAQSL 701
Cdd:COG3063 71 ELGDYDEALAYLERALELDPSA 92
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
960-1184 |
1.27e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.76 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 960 LHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETD--NPTcQGRAYGNL 1037
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlaLPD-LAQLYYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1038 GLTYESLGTFERAVvyqeQHLSIAAQMNDLVAKTlsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGL 1117
Cdd:COG4785 80 GVAYDSLGDYDLAI----ADFDQALELDPDLAEA--YNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLNR 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 1118 GLSLWASGNLEEAQHQLYRASALFET------IRHEAQLSTDYKLSLFDLQtssyQALQRVLVSLGHHDEALA 1184
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNdperalWLYLAERKLDPEKALALLL----EDWATAYLLQGDTEEARE 216
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
949-1099 |
1.40e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.76 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 949 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQyhqlDLQIAEETDnPT 1028
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALE----DFDRALELD-PD 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1029 cQGRAYGNLGLTYESLGTFERAV-----VYQ------EQHLS---IAAQMNDLVAKTLSYSSLGRTHHALQNYSQAVMYL 1094
Cdd:COG4785 140 -YAYAYLNRGIALYYLGRYELAIadlekALEldpndpERALWlylAERKLDPEKALALLLEDWATAYLLQGDTEEARELF 218
|
....*
gi 564380019 1095 QEGLR 1099
Cdd:COG4785 219 KLALA 223
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1032-1103 |
1.40e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 1.40e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564380019 1032 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLVAKTLSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 1103
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
445-677 |
1.55e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 445 ERARQYHEQQLSIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAaqgRAYGNMGNAYNALGMY 524
Cdd:COG4785 17 AAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDR----ALALPDLA---QLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 525 DQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHDRALQHYqnhlNIARELRDiqSEARALSNLGNFHCSRGEY 604
Cdd:COG4785 90 DLAIADFDQALEL------DPDLAEAYNNRGLAYLLLGDYDAALEDF----DRALELDP--DYAYAYLNRGIALYYLGRY 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 605 VQAAPYYEQYLRLAPDLQDMegegkvcHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCNLGLA 677
Cdd:COG4785 158 ELAIADLEKALELDPNDPER-------ALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
268-340 |
1.90e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.69 E-value: 1.90e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564380019 268 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 340
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
929-1061 |
1.91e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 929 QALVCFEKRLVvahelgEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYD 1008
Cdd:COG4235 1 EAIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564380019 1009 TALQYhqLDLQIAEETDNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIA 1061
Cdd:COG4235 69 EAEEL--LERALALDPDNP----EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
66-288 |
2.00e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG2956 56 GEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 146 GLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLqkMKLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKIGtcslK 225
Cdd:COG2956 136 LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA--LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD----P 209
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 226 LRGSVFSALSSAHWSLGNTEKSTGYMQQDLdvaktlgDQTGECRAHGNLGSAFFSKGNYREAL 288
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLLALADLLERKEGLEAAL 265
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
872-896 |
2.12e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.20 E-value: 2.12e-05
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
845-954 |
2.25e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.75 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 845 EDAIGYFEQqlaMLQQLSGNESvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDqakAYRGLGNGHRAT 924
Cdd:COG1729 10 DEAIAAFKA---FLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|
gi 564380019 925 GSLQQALVCFEKrLVVAHELGEASNKAQAY 954
Cdd:COG1729 81 GDYDKARATLEE-LIKKYPDSEAAKEARAR 109
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
748-820 |
2.31e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.69 E-value: 2.31e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564380019 748 ASAYAALGTAYRMVQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRK 820
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
944-1061 |
2.52e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 944 LGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEe 1023
Cdd:COG5010 47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP- 119
|
90 100 110
....*....|....*....|....*....|....*...
gi 564380019 1024 tDNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIA 1061
Cdd:COG5010 120 -DNP----NAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
2036-2448 |
2.65e-05 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 49.30 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2036 SPQARRGVSKEEEEYegfsiiSMEPLATYQGEGKARFSPDPKQPCVKAPGGVRLSVSSKGSvstpnsPVKMTLiPSPNSP 2115
Cdd:pfam03546 12 ATQAKAGKPEEDSES------SSEEESDSEEETPAAKTPLQAKPSGKTPQVRAASAPAKES------PRKGAP-PVPPGK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2116 FQKVGKLASSDTGE--SDQSSTETDStvksqEESSPkldpqelaqrileetkshllAVERLQRSGGPASPDREDGVVAPS 2193
Cdd:pfam03546 79 TGPAAAQAQAGKPEedSESSSEESDS-----DGETP--------------------AAATLTTSPAQVKPLGKNSQVRPA 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2194 STTVFRASETSAFSKPILSHQRSQLSPLTIKPQPPARSSSLPKVSSPATSEVSGKdglsppgssHPSPGRDTPVSPAdpp 2273
Cdd:pfam03546 134 STVGKGPSGKGANPAPPGKAGSAAPLVQVGKKEEDSESSSEESDSEGEAPPAATQ---------AKPSGKILQVRPA--- 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2274 lfrlkypSSPYSAHISKSPRNTSPAC-------SAPSPALSYSSAGSARSSPADVPdeKVQAVHSLKmlwqsTPQPPRGP 2346
Cdd:pfam03546 202 -------SGPAKGAAPAPPQKAGPVAtqvkaerSKEDSESSEESSDSEEEAPAAAT--PAQAKPALK-----TPQTKASP 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2347 RKicrGAPGTLTSKRdVLSLLNLSPRHGKEEGEADRLELKELSVQRRDEvPPKVPTNGHWCSD-----AATLTTASGRS- 2420
Cdd:pfam03546 268 RK---GTPITPTSAK-VPPVRVGTPAPWKAGTVTSPACASSPAVARGAQ-RPEEDSSSSEESEseeetAPAAAVGQAKSv 342
|
410 420 430
....*....|....*....|....*....|..
gi 564380019 2421 ----TTAAASRPLRLPLANGYKFLPPGRLFPS 2448
Cdd:pfam03546 343 gkglQGKAASAPTKGPSGQGTAPVPPGKTGPA 374
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
2055-2347 |
2.88e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 49.53 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2055 IISMEPLATYQGEGKARFSPDPKQPCVKAPGGVRLSVSSKGSVSTPN--SPVKMTLIPSPNSPFQKVGKLA--SSDTGES 2130
Cdd:pfam05109 473 VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNatSPTPAVTTPTPNATSPTLGKTSptSAVTTPT 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2131 DQSSTETDS-TVKSQEESSPKLDPQELAQRILEETKShllAVERLQRSGGPASPDREDGVVAPSSTTVFRA---SETSAF 2206
Cdd:pfam05109 553 PNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPN---ATSPTVGETSPQANTTNHTLGGTSSTPVVTSppkNATSAV 629
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2207 SKPILSHQRSQLSPLTIKPqpparsSSLPKVSSPATSEVSGKDGLSPPGSSHPSPGRDTPVSPAdpplfrlkypsSPYSA 2286
Cdd:pfam05109 630 TTGQHNITSSSTSSMSLRP------SSISETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPA-----------STSTH 692
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564380019 2287 HISKSprntSPacsAPSPALSYSSAGSARSSPADVPDEkVQAVHSLKMLWQSTPQPPRGPR 2347
Cdd:pfam05109 693 HVSTS----SP---APRPGTTSQASGPGNSSTSTKPGE-VNVTKGTPPKNATSPQAPSGQK 745
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
590-625 |
3.73e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.53 E-value: 3.73e-05
10 20 30
....*....|....*....|....*....|....*.
gi 564380019 590 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 625
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1000-1104 |
4.28e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1000 VYQQMGEYDTALQYHQLDLQIAEEtdnptcQGRAYGNLGLTYESLGTFERAVVYQEqhlSIAAQMNDLVAktlsYSSLGR 1079
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNAEA----LLNLAE 67
|
90 100
....*....|....*....|....*
gi 564380019 1080 THHALQNYSQAVMYLQEGLRLAEQL 1104
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSA 92
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
59-137 |
4.96e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 46.20 E-value: 4.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 59 SNQAchDGDFHTAIALYNEALAV--DP--QNCILYsNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLG 134
Cdd:PRK02603 44 SAQA--DGEYAEALENYEEALKLeeDPndRSYILY-NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120
|
...
gi 564380019 135 RHA 137
Cdd:PRK02603 121 EKA 123
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
867-1021 |
5.14e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 5.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 867 VLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELge 946
Cdd:COG5010 10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----ALQL-- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564380019 947 ASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIA 1021
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PHA03377 |
PHA03377 |
EBNA-3C; Provisional |
2044-2405 |
5.96e-05 |
|
EBNA-3C; Provisional
Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 48.51 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2044 SKEEEEYEGFSIISMEPLATYQ--GEGKARFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVGK 2121
Cdd:PHA03377 520 TEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPRD 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2122 LASSDTGESDQSSTETDSTVKSQEESSPKldpqELAQRILEETKSHLLAVER-LQRSGGPaspdredgvvAPSSTTVFRA 2200
Cdd:PHA03377 590 MAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMRA 655
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2201 S-ETSAFSKPILSHQRSQLSPLTIKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD---- 2271
Cdd:PHA03377 656 GrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlslh 735
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2272 PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADVPDEKVQavhslkmlwqsTPQPPRGPRKICR 2351
Cdd:PHA03377 736 PDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSYP 791
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564380019 2352 GAPGTLTSK------RDVLSLLNLSPRHGKEEGEADrlelkelsvQRRDEVPPK-VPTNGH 2405
Cdd:PHA03377 792 GYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGH 843
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
386-490 |
6.01e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 6.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 386 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELTEkpiemrAYAGLGHAARCMQDLERARQYHEQQLSIAEDlkdra 465
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALDPD----- 83
|
90 100
....*....|....*....|....*
gi 564380019 466 aEGRASSNLGIIHQMKGDYDTALKL 490
Cdd:COG4235 84 -NPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
351-384 |
6.34e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.14 E-value: 6.34e-05
10 20 30
....*....|....*....|....*....|....
gi 564380019 351 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSK 384
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
655-817 |
6.52e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 6.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 655 LALAKDLHDKLSQAKAYCNLGLAFKALLNFTKAEECQKYLLSLAQSLDNSQAKFRALGNLGDIFVCKKDVNGAIKFYEQQ 734
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 735 LGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYhtqeLEVYQELSdlPGECRAHGHLAAVYMALGKYTMAFKCYQEQ 814
Cdd:COG5010 81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALS--PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
...
gi 564380019 815 LEL 817
Cdd:COG5010 149 LGT 151
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
721-821 |
7.05e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 7.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 721 KKDVNGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHtqelevyQELSDLPGECRAHGHLAAVYMA 800
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-------KALKLDPNNAEALLNLAELLLE 71
|
90 100
....*....|....*....|.
gi 564380019 801 LGKYTMAFKCYQEQLELGRKL 821
Cdd:COG3063 72 LGDYDEALAYLERALELDPSA 92
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
95-184 |
7.33e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 7.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 95 AYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALaAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLE 174
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 564380019 175 PTYQQLQKMK 184
Cdd:COG3063 80 AYLERALELD 89
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
709-780 |
7.86e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 7.86e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564380019 709 RALGNLGDIFVCKKDVNGAIKFYEQQLGLSHHV--KDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQE 780
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
66-164 |
7.88e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 7.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVAlQYLGRHADALAAfas 145
Cdd:COG4785 121 GDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA-ERKLDPEKALAL--- 196
|
90
....*....|....*....
gi 564380019 146 gLAQDPKSLQLLVGMVEAA 164
Cdd:COG4785 197 -LLEDWATAYLLQGDTEEA 214
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
869-1039 |
8.18e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 8.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 869 DRGRAYGNLGDCYEALGDYEEAIKYYEQylsvAQSLNrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeAS 948
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQ----ALELD--PDLAEAYNNRGLAYLLLGDYDAALEDFDR----ALEL--DP 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 949 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALesdaacgLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT 1028
Cdd:COG4785 139 DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL-------WLYLAERKLDPEKALALLLEDWATAYLLQGDT 211
|
170
....*....|.
gi 564380019 1029 CQGRAYGNLGL 1039
Cdd:COG4785 212 EEARELFKLAL 222
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
441-538 |
8.57e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 8.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 441 MQDLERARQYHEQQLSIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLHKthlciAQELSDYAAQgrAYGNMGNAYNA 520
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAELLLE 71
|
90
....*....|....*...
gi 564380019 521 LGMYDQAVKYHRQELQIS 538
Cdd:COG3063 72 LGDYDEALAYLERALELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
71-179 |
1.01e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 71 AIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 150
Cdd:COG5010 39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
|
90 100
....*....|....*....|....*....
gi 564380019 151 PKSLQLLVGMVEAAMKSPMRDTLEPTYQQ 179
Cdd:COG5010 119 PDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
939-1326 |
1.03e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 47.93 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 939 VVAHELGEASNKAQAYGEL---GSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYhq 1015
Cdd:COG3899 690 ELAHHLNRAGERDRAARLLlraARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEAL-- 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1016 ldlqiaeetdnptcqgraygnlgltyeslgtFERAVVYQEQHLSIAAQMNDLVAKTLSYSSLGRTHhaLQNYSQAVMYLQ 1095
Cdd:COG3899 768 -------------------------------LERALAARALAALAALRHGNPPASARAYANLGLLL--LGDYEEAYEFGE 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1096 EGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVS 1175
Cdd:COG3899 815 LALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAA 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1176 LGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFH 1255
Cdd:COG3899 895 RLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAA 974
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564380019 1256 EHYLGDNSVESSSDFQAGSSAALPIATSSTLEQHIASVREALGVESYYSRACASSETESEAGDIVEQQLEE 1326
Cdd:COG3899 975 AAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALAL 1045
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
71-153 |
1.52e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 45.68 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 71 AIALYNEALAvDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 150
Cdd:COG4785 59 AAERIDRALA-LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD 137
|
...
gi 564380019 151 PKS 153
Cdd:COG4785 138 PDY 140
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
606-735 |
1.53e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 606 QAAPYYEQYLRLAPDlqdmEGEGKVchNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFT 685
Cdd:COG4235 1 EAIARLRQALAANPN----DAEGWL--LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 564380019 686 KAEEcqkyLLSLAQSLDNSQAkfRALGNLGDIFVCKKDVNGAIKFYEQQL 735
Cdd:COG4235 69 EAEE----LLERALALDPDNP--EALYLLGLAAFQQGDYAEAIAAWQKLL 112
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
65-153 |
1.69e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 65 DGDFHTAIALYNEALAVDPQNCIL---YSNRSAAYMKTQQYHKALD---DAVKARLLNPKWPKAYFRQGVALQYLGRHAD 138
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEafeKLLKRYPDSPKAPDALLKLGLSYLELGDYDK 85
|
90
....*....|....*
gi 564380019 139 ALAAFASGLAQDPKS 153
Cdd:COG1729 86 ARATLEELIKKYPDS 100
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2059-2362 |
1.84e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.09 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2059 EPLATYQGEGKARFSPDPKQPCVKAPGGvrlSVSSKGSVSTPNSPVkmtliPSPNSPFQKVGKLASSDTGESDQSS---- 2134
Cdd:PHA03307 85 RSTPTWSLSTLAPASPAREGSPTPPGPS---SPDPPPPTPPPASPP-----PSPAPDLSEMLRPVGSPGPPPAASPpaag 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2135 ---TETDSTVKSQEESSPKLD-PQELAQRILEETKSHLLAVERLQRSGGPASPDREDGVVAPSST------TVFRASETS 2204
Cdd:PHA03307 157 aspAAVASDAASSRQAALPLSsPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPApapgrsAADDAGASS 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2205 AFSKPILShQRSQLSPLTIKPQPPARSSSLPKVS-SPATSEVSGKDGLSPPGSSHPSPGRDTPVS------PADPPLFRL 2277
Cdd:PHA03307 237 SDSSSSES-SGCGWGPENECPLPRPAPITLPTRIwEASGWNGPSSRPGPASSSSSPRERSPSPSPsspgsgPAPSSPRAS 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2278 KYPSSPYSAHISKSPR--NTSPACSAPSPALSYSSAGSARSSPADVPDEKVQAVHSLKMLWQSTPQPPRGPRKICRGAPG 2355
Cdd:PHA03307 316 SSSSSSRESSSSSTSSssESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVA 395
|
....*..
gi 564380019 2356 TLTSKRD 2362
Cdd:PHA03307 396 GRARRRD 402
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
845-931 |
2.14e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 845 EDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVA-QSLNRMQDQAKAYRGLGNGHRA 923
Cdd:COG5010 71 EESLALLEQALQLDP---------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEA 141
|
....*...
gi 564380019 924 TGSLQQAL 931
Cdd:COG5010 142 KAALQRAL 149
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1010-1189 |
2.15e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 46.52 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1010 ALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAktlsYSSLGRTHHALQNYSQ 1089
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1090 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheAQLSTDYklslfdlqTSSYQAL 1169
Cdd:COG3914 97 ALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRA----------LALNPDF--------AEAYLNL 152
|
170 180
....*....|....*....|
gi 564380019 1170 QRVLVSLGHHDEALAVAERG 1189
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRA 172
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
641-738 |
2.23e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 641 LGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFTKAEECQKyllslAQSLDNSQAkfRALGNLGDIFVC 720
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNA--EALLNLAELLLE 71
|
90
....*....|....*...
gi 564380019 721 KKDVNGAIKFYEQQLGLS 738
Cdd:COG3063 72 LGDYDEALAYLERALELD 89
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
629-660 |
2.29e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.20 E-value: 2.29e-04
10 20 30
....*....|....*....|....*....|..
gi 564380019 629 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 660
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
869-938 |
2.53e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 2.53e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 869 DRGRAYGNLGDCYEALGDYEEAIKYyeqylsvAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRL 938
Cdd:COG3063 24 DNADALNNLGLLLLEQGRYDEAIAL-------EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
310-410 |
2.65e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 310 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSearelgNMGAVYIAMGDFENAVQCHEQHLRIAKDlgskreEAR 389
Cdd:COG4235 19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALL------DLAEALLAAGDTEEAEELLERALALDPD------NPE 86
|
90 100
....*....|....*....|.
gi 564380019 390 AYSNLGSAYHYRRNFDKAMSY 410
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAA 107
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
885-976 |
3.17e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 885 GDYEEAIKYYEQYLSVAQSLNRmqdQAKAYRGLGNGHRATGSLQQALVCFEKrlvVAHELGEASNKAQAYGELGSLHSQL 964
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLEL 80
|
90
....*....|..
gi 564380019 965 GNYEQAISCLER 976
Cdd:COG1729 81 GDYDKARATLEE 92
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
510-545 |
3.75e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 39.83 E-value: 3.75e-04
10 20 30
....*....|....*....|....*....|....*.
gi 564380019 510 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 545
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
872-899 |
4.75e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.43 E-value: 4.75e-04
10 20
....*....|....*....|....*...
gi 564380019 872 RAYGNLGDCYEALGDYEEAIKYYEQYLS 899
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
951-983 |
4.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 39.30 E-value: 4.93e-04
10 20 30
....*....|....*....|....*....|...
gi 564380019 951 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 983
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
629-660 |
5.47e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 5.47e-04
10 20 30
....*....|....*....|....*....|..
gi 564380019 629 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 660
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
388-420 |
5.63e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 5.63e-04
10 20 30
....*....|....*....|....*....|...
gi 564380019 388 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 420
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
317-421 |
6.33e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 6.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 317 VYTAIGDYPNALASHKQCVLLAKqskdDLSEAreLGNMGAVYIAMGDFENAVQChEQHLRIAKDlgskreEARAYSNLGS 396
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDP----DNADA--LNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67
|
90 100
....*....|....*....|....*
gi 564380019 397 AYHYRRNFDKAMSYHNCVLELAQEL 421
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSA 92
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
414-538 |
7.54e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 414 VLELAQELTEKPIEMRAYAGLGHAARCMQDLERARQYHEQqlsiAEDLKDRAAEGRAssNLGIIHQMKGDYDTALKLhkt 493
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEK----ALRLDPDNADALL--DLAEALLAAGDTEEAEEL--- 73
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 564380019 494 hlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIS 538
Cdd:COG4235 74 ---LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
469-677 |
8.64e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.91 E-value: 8.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 469 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 543
Cdd:NF040586 521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 544 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 618
Cdd:NF040586 601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564380019 619 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 677
Cdd:NF040586 671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
951-984 |
1.15e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 1.15e-03
10 20 30
....*....|....*....|....*....|....
gi 564380019 951 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 984
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
845-981 |
1.26e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 845 EDAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaqslnrmqDQAKAYRGLGNGHRAT 924
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP-------------NNPELYYNLALLYSRS 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 564380019 925 GSLQQALVCFEKrlvvAHELgeASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 981
Cdd:COG5010 102 GDKDEAKEYYEK----ALAL--SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
355-529 |
1.36e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 355 GAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelteKPIEMRAYAGL 434
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLNR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 435 GHAARCMQDLERArqyhEQQLSIAEDLKDRAAEgrASSNLGIIhQMKGDYDTALKLHKTHLciaqelsdyaaqGRAYGNM 514
Cdd:COG4785 148 GIALYYLGRYELA----IADLEKALELDPNDPE--RALWLYLA-ERKLDPEKALALLLEDW------------ATAYLLQ 208
|
170
....*....|....*
gi 564380019 515 GNAYNALGMYDQAVK 529
Cdd:COG4785 209 GDTEEARELFKLALA 223
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
2057-2306 |
1.37e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.99 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2057 SMEPLATyqGEGKARFSPD----PKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTL------IPSPNSPFQKVGKLASSD 2126
Cdd:pfam03154 13 SMSTLRS--GRKKQTASPDgrasPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSkkikeeAPSPLKSAKRQREKGASD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2127 TGESDQSSTETDstvKSQEESSPKlDPQE------LAQRILEETKSHLLAVERLQRSGGPASPDREDGVVAPSSTTVFRA 2200
Cdd:pfam03154 91 TEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2201 SETSafsKPILSHQrsqlSPLTIKPQPPARSSSlpkvSSPATSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPLF----- 2275
Cdd:pfam03154 167 LQTQ---PPVLQAQ----SGAASPPSPPPPGTT----QAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLiqqtp 235
|
250 260 270
....*....|....*....|....*....|....*.
gi 564380019 2276 -----RLKYPSSPYSAHISKSPRNTSPACSAPSPAL 2306
Cdd:pfam03154 236 tlhpqRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSL 271
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
2177-2450 |
1.61e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 43.75 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2177 SGGPASPDREDGVVAPSST--TVFRASETSafskPILSHQRSQLSPLTIKPQP--PARSSSLPKVSSPaTSEVSgkdgLS 2252
Cdd:pfam05109 446 TGLPSSTHVPTNLTAPASTgpTVSTADVTS----PTPAGTTSGASPVTPSPSPrdNGTESKAPDMTSP-TSAVT----TP 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2253 PPGSSHPSPGRDTPVSPADPPLFRLKYPSS----PYSAHISKSPRNTSPACSAPSPALSYSSAGSARSSPA------DVP 2322
Cdd:pfam05109 517 TPNATSPTPAVTTPTPNATSPTLGKTSPTSavttPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTpnatspTVG 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2323 DEKVQAVHSLKML--WQSTP---QPPRGPRKICRGAPGTLTSKRDvlSLLNLSPRHGKEEGEAdrlELKELSVQRRDEVP 2397
Cdd:pfam05109 597 ETSPQANTTNHTLggTSSTPvvtSPPKNATSAVTTGQHNITSSST--SSMSLRPSSISETLSP---STSDNSTSHMPLLT 671
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 564380019 2398 PKVPTNGHWCSDAATLTTASGR-STTAAASRPLRLPLANGykflpPGRLFPSSK 2450
Cdd:pfam05109 672 SAHPTGGENITQVTPASTSTHHvSTSSPAPRPGTTSQASG-----PGNSSTSTK 720
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
197-609 |
1.62e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 44.08 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 197 GQELLTAGHHGASVVVLEAALKIGTCSL-------KLRGSVFSALSSAHWSLGNTEKSTGYMQQDLDVAKTLGDQTGECR 269
Cdd:COG3899 752 AEALYLAGRFEEAEALLERALAARALAAlaalrhgNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEAR 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 270 AHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEAR 349
Cdd:COG3899 832 ALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAA 911
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 350 ELGnMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELTEKPIEMR 429
Cdd:COG3899 912 ALA-AAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAA 990
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 430 AYAGLGHAARCMQDLERARQYHEQQLSIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 509
Cdd:COG3899 991 LEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLA 1070
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 510 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEAR 589
Cdd:COG3899 1071 AAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALL 1150
|
410 420
....*....|....*....|
gi 564380019 590 ALSNLGNFHCSRGEYVQAAP 609
Cdd:COG3899 1151 LLAALLLALALLLLALAALA 1170
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
499-620 |
1.84e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.92 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 499 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 570
Cdd:PRK11447 294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 564380019 571 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 620
Cdd:PRK11447 374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
509-533 |
1.85e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 1.85e-03
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
452-594 |
1.93e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 452 EQQLSIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDyaaqgrAYGNMGNAYNALGMYDQAVKYH 531
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELL 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 532 RQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNL 594
Cdd:COG4235 75 ERALALD------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1010-1137 |
2.00e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.10 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1010 ALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLVAktlsYSSLGRTHHALQNYSQ 1089
Cdd:COG5010 33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--NNPEL----YYNLALLYSRSGDKDE 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 564380019 1090 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRA 1137
Cdd:COG5010 107 AKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
588-620 |
2.34e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 2.34e-03
10 20 30
....*....|....*....|....*....|...
gi 564380019 588 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 620
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
66-157 |
2.44e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.30 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMKTQQYHKALDDAVKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 145
Cdd:COG0457 124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
90
....*....|..
gi 564380019 146 GLAQDPKSLQLL 157
Cdd:COG0457 204 EQALRKKLAILT 215
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
951-1013 |
2.54e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 2.54e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 951 AQAYGELGSLHSQLGNYEQAISCLERqlnIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 1013
Cdd:COG1729 30 PDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDYDKARAT 89
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
479-620 |
2.93e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 40.76 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 479 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 556
Cdd:CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564380019 557 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 620
Cdd:CHL00033 115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
509-537 |
3.02e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 3.02e-03
10 20
....*....|....*....|....*....
gi 564380019 509 RAYGNMGNAYNALGMYDQAVKYHRQELQI 537
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
544-658 |
3.16e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 40.76 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 544 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 622
Cdd:CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 564380019 623 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 658
Cdd:CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
513-618 |
3.28e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.79 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 513 NMGNAYNALGMYDQAVKYHRQELQismevndRASQASTHG--NLAVAYQALGAHDRALQHyqnhlniARELRDIQSE--- 587
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALT-------GIFADDPHIllGLAQALFELGRYAEALET-------LEKLIAKNPDfks 159
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 564380019 588 -------ARALSNLGNFHCSRGEYVQAA---PYYEQYLRLA 618
Cdd:COG4700 160 sdahllyARALEALGDLEAAEAELEALArrySGPEARYRYA 200
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
827-978 |
3.29e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.44 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 827 EAQVYGNMGITKMNMNVVEDAIGYFEQQLAMlqqlsgnesVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYlsvaqsLNR 906
Cdd:COG4785 72 LAQLYYERGVAYDSLGDYDLAIADFDQALEL---------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRA------LEL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 907 MQDQAKAYRGLGNGHRATGSLQQALVCFEK--------------RLVVAHELGEASNKAQAYGELGSLHSQLGNYEQAIS 972
Cdd:COG4785 137 DPDYAYAYLNRGIALYYLGRYELAIADLEKaleldpndperalwLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARE 216
|
....*.
gi 564380019 973 CLERQL 978
Cdd:COG4785 217 LFKLAL 222
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
556-653 |
3.60e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 556 VAYQALGAHDRALQHYQNhlnIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEgegKVCHNLG 635
Cdd:COG1729 1 KALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP---DALLKLG 74
|
90
....*....|....*...
gi 564380019 636 YAHYCLGNYQEAVKYYEQ 653
Cdd:COG1729 75 LSYLELGDYDKARATLEE 92
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2000-2359 |
3.80e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.00 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2000 SKPEGGLEGGAPRGRQDYD------------RSKSTHPQRATLPRRQMSPQARRGVS-----------KEEEEYEGFSII 2056
Cdd:PHA03247 2637 EPDPHPPPTVPPPERPRDDpapgrvsrprraRRLGRAAQASSPPQRPRRRAARPTVGsltsladppppPPTPEPAPHALV 2716
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2057 SMEPLATYQGEGKARFSPDPKQPcvkAPGGVRLSVSSKGSVSTPNSPVKMTLIPSPNSPFQKVGKLASSDTGESDQSSTE 2136
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAP---APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSE 2793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2137 TDSTVKSQEESSPKLDPQELAQRILEETKS---------HLLAVERLQRSGGPASPDREDGVVAPSSTTVFRASETSAFS 2207
Cdd:PHA03247 2794 SRESLPSPWDPADPPAAVLAPAAALPPAASpagplppptSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA 2873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2208 KPilshqrsqlsplTIKPQPPARSSSLPKVSSPATSEVSGKDGLSPPGsshpspgrdTPVSPADPplfrlkYPSSPYSAH 2287
Cdd:PHA03247 2874 KP------------AAPARPPVRRLARPAVSRSTESFALPPDQPERPP---------QPQAPPPP------QPQPQPPPP 2926
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564380019 2288 ISKSPRNTSPACSAPSPALSYSSAGSARSSPAdVPDEKVQAVHSLKMLWQSTPQP-PRGPRKICRGAPGTLTS 2359
Cdd:PHA03247 2927 PQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA-VPQPWLGALVPGRVAVPRFRVPqPAPSREAPASSTPPLTG 2998
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
104-219 |
3.93e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 104 KALDDAVKArllNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLqkM 183
Cdd:COG4235 4 ARLRQALAA---NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA--L 78
|
90 100 110
....*....|....*....|....*....|....*.
gi 564380019 184 KLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKI 219
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
629-660 |
4.26e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 4.26e-03
10 20 30
....*....|....*....|....*....|..
gi 564380019 629 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 660
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
788-817 |
4.27e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 4.27e-03
10 20 30
....*....|....*....|....*....|
gi 564380019 788 CRAHGHLAAVYMALGKYTMAFKCYQEQLEL 817
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
348-380 |
4.31e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 4.31e-03
10 20 30
....*....|....*....|....*....|...
gi 564380019 348 ARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 380
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
303-582 |
4.46e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 41.91 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 303 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLG 382
Cdd:pfam17874 35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 383 SKREEA--RAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELTEKpIEMRAYAGLGHAARCMQDLERARQYHEQ-QLSIAE 459
Cdd:pfam17874 115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPD-AAVDAYVLLARIALAQGELEEALTLLRRaELLARQ 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 460 DLKDRAAEGRASSNLGIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrqeLQIS 538
Cdd:pfam17874 194 SFFHVDWLANAERVRVRLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA-------LSLL 263
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 564380019 539 MEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 582
Cdd:pfam17874 264 ERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
872-1200 |
5.46e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 42.21 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 872 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RATGSLQQALVCFEKR 937
Cdd:NF040586 435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 938 LVVAHEL-GE--------ASNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 1008
Cdd:NF040586 505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1009 TALQY----HQLDLQIAEETDNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMndlvakt 1071
Cdd:NF040586 580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAAL------- 651
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 1072 lsysSLGRTHHALQNYSQAVMYLQEGL-RLAEQLGRRedeakirH--------GLGLSLWASGNLEEAQHQLYRASALFe 1142
Cdd:NF040586 652 ----SLANDLRALGDADEARELAREVLdRYRRVLGED-------HpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 564380019 1143 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1200
Cdd:NF040586 720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
2104-2372 |
6.07e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.98 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2104 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESSPKLDPQELaQRILEETKSHLlaverlqRSGG 2179
Cdd:PHA03378 520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQL-------ASSA 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2180 PASPDREDGVVAPSS-----TTVFRASETSA----------------------FSKPILS--HQRSQLSPLTIK------ 2224
Cdd:PHA03378 590 PSYAQTPWPVPHPSQtpeppTTQSHIPETSAprqwpmplrpipmrplrmqpitFNVLVFPtpHQPPQVEITPYKptwtqi 669
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2225 ------PQPPARSSSLPKVSSPATSEVSGKdglsppgsshpspgRDTPVSPADPPLFRLKYPSSPYSAH--ISKSPRNTS 2296
Cdd:PHA03378 670 ghipyqPSPTGANTMLPIQWAPGTMQPPPR--------------APTPMRPPAAPPGRAQRPAAATGRArpPAAAPGRAR 735
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564380019 2297 PACSAPSPALSYSSAGSARSSPADVPDE-KVQAVHSLKMLWQSTPQPPRGPRKICRGAPGTLTSKRDVLSLLNLSPR 2372
Cdd:PHA03378 736 PPAAAPGRARPPAAAPGRARPPAAAPGRaRPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPR 812
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
2177-2347 |
6.18e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 41.98 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2177 SGGPASPdREDGvvAPSSTtvfRASETSAFSKPILSHQRSQLSPLTIKPQPPARSSSLPKVSSPATSEvsgkdglsppgs 2256
Cdd:PTZ00449 537 SKESDEP-KEGG--KPGET---KEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPK------------ 598
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2257 shpspgrdTPVSPADPplFRLKYPSSPYSAHISKSPRN----TSPAcSAPSPalsyssagSARSSPadvpdEKVQAVHSL 2332
Cdd:PTZ00449 599 --------RPRSAQRP--TRPKSPKLPELLDIPKSPKRpespKSPK-RPPPP--------QRPSSP-----ERPEGPKII 654
|
170
....*....|....*
gi 564380019 2333 KmlwqsTPQPPRGPR 2347
Cdd:PTZ00449 655 K-----SPKPPKSPK 664
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
550-583 |
6.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 36.36 E-value: 6.38e-03
10 20 30
....*....|....*....|....*....|....
gi 564380019 550 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 583
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
388-420 |
6.64e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 6.64e-03
10 20 30
....*....|....*....|....*....|...
gi 564380019 388 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 420
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
632-662 |
7.08e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 36.33 E-value: 7.08e-03
10 20 30
....*....|....*....|....*....|.
gi 564380019 632 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 662
Cdd:pfam13374 6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2073-2347 |
7.49e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2073 SPDPKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTLIPSPNSPFQKVGKLASSDTGESDQSSTETDSTVK--SQEESSPK 2150
Cdd:PHA03307 178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCgwGPENECPL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2151 LDPQELAQRILEETKSHLLAVERLQRSGGPASPDREDGVVAPSSTTVFRASETSAFSKPILSHQRSqlspltikpqppar 2230
Cdd:PHA03307 258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE-------------- 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2231 ssslpkVSSPATSEVSgkdglsppgsshpsPGRDTPVSPADPPLFRLKYPSSPYSAHISKSPR-NTSPACSAPSPALSYS 2309
Cdd:PHA03307 324 ------SSSSSTSSSS--------------ESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRkRPRPSRAPSSPAASAG 383
|
250 260 270
....*....|....*....|....*....|....*...
gi 564380019 2310 SAGSARSSPADVPDEKVQavhslkmlwQSTPQPPRGPR 2347
Cdd:PHA03307 384 RPTRRRARAAVAGRARRR---------DATGRFPAGRP 412
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
66-98 |
8.06e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.30 E-value: 8.06e-03
10 20 30
....*....|....*....|....*....|...
gi 564380019 66 GDFHTAIALYNEALAVDPQNCILYSNRSAAYMK 98
Cdd:pfam13414 8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2060-2347 |
8.16e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 8.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2060 PLATYQGEGKARFSPDPKQP-CVKAPGGVRLS--VSSKGSVSTPNSPVKMtliPSPNSPFQKVGKLASS-------DTGE 2129
Cdd:PHA03247 2633 PAANEPDPHPPPTVPPPERPrDDPAPGRVSRPrrARRLGRAAQASSPPQR---PRRRAARPTVGSLTSLadpppppPTPE 2709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2130 S----DQSSTETDSTVKSQEESSPKLdPQELAQRILEETKSHLLAVERLQRSGGPASPDREDGVVAPSSTTVFRASETSA 2205
Cdd:PHA03247 2710 PaphaLVSATPLPPGPAAARQASPAL-PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 2206 FS-KPILSHQRSQLSPLTIKPQPPARSSSLPKVSSPATSEvsgkdglsppgsshPSPGRDTPVSPADPPLFrlkyPSSPY 2284
Cdd:PHA03247 2789 ASlSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL--------------PPPTSAQPTAPPPPPGP----PPPSL 2850
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564380019 2285 SAHISKSP-----RNTSPACSAPSPALSYSSAGSARSSPADVPDEKVQAVHSLKMLWQSTPQPPRGPR 2347
Cdd:PHA03247 2851 PLGGSVAPggdvrRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ 2918
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
646-770 |
8.87e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 8.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564380019 646 EAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFTKAEECQKYLLSLAQslDNSQAkfraLGNLGDIFVCKKDVN 725
Cdd:COG4235 1 EAIARLRQ--ALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA----LLDLAEALLAAGDTE 68
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 564380019 726 GAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGY 770
Cdd:COG4235 69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
|
|
| |
