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Conserved domains on  [gi|564389779|ref|XP_006253428|]
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defensin alpha 4 isoform X1 [Rattus norvegicus]

Protein Classification

Defensin_propep and Defensin_1 domain-containing protein( domain architecture ID 10467842)

Defensin_propep and Defensin_1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Defensin_1 pfam00323
Mammalian defensin;
97-125 1.03e-09

Mammalian defensin;


:

Pssm-ID: 425607  Cd Length: 29  Bit Score: 49.91  E-value: 1.03e-09
                          10        20
                  ....*....|....*....|....*....
gi 564389779   97 CYCRIGACVSGERLTGACGLNGRIYRLCC 125
Cdd:pfam00323   1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
Defensin_propep pfam00879
Defensin propeptide;
49-83 1.48e-08

Defensin propeptide;


:

Pssm-ID: 459976  Cd Length: 51  Bit Score: 47.61  E-value: 1.48e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 564389779   49 HTQAESPQERAKAAPDQDMV-MEDQDIFISFGGYKG 83
Cdd:pfam00879  16 QAQAEPLQARADEAPDQEQPgAEDQDVSISFAGDES 51
 
Name Accession Description Interval E-value
Defensin_1 pfam00323
Mammalian defensin;
97-125 1.03e-09

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 49.91  E-value: 1.03e-09
                          10        20
                  ....*....|....*....|....*....
gi 564389779   97 CYCRIGACVSGERLTGACGLNGRIYRLCC 125
Cdd:pfam00323   1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
Defensin_propep pfam00879
Defensin propeptide;
49-83 1.48e-08

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 47.61  E-value: 1.48e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 564389779   49 HTQAESPQERAKAAPDQDMV-MEDQDIFISFGGYKG 83
Cdd:pfam00879  16 QAQAEPLQARADEAPDQEQPgAEDQDVSISFAGDES 51
DEFSN smart00048
Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped ...
 97-125 3.04e-05

Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped viruses by forming multimeric membrane-spanning channels.


Pssm-ID: 128363  Cd Length: 29  Bit Score: 38.47  E-value: 3.04e-05
                           10        20
                   ....*....|....*....|....*....
gi 564389779    97 CYCRIGACVSGERLTGACGLNGRIYRLCC 125
Cdd:smart00048   1 CYCRRRRCPRRERRIGTCRIRGRRYTFCC 29
 
Name Accession Description Interval E-value
Defensin_1 pfam00323
Mammalian defensin;
97-125 1.03e-09

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 49.91  E-value: 1.03e-09
                          10        20
                  ....*....|....*....|....*....
gi 564389779   97 CYCRIGACVSGERLTGACGLNGRIYRLCC 125
Cdd:pfam00323   1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
Defensin_propep pfam00879
Defensin propeptide;
49-83 1.48e-08

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 47.61  E-value: 1.48e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 564389779   49 HTQAESPQERAKAAPDQDMV-MEDQDIFISFGGYKG 83
Cdd:pfam00879  16 QAQAEPLQARADEAPDQEQPgAEDQDVSISFAGDES 51
DEFSN smart00048
Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped ...
 97-125 3.04e-05

Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped viruses by forming multimeric membrane-spanning channels.


Pssm-ID: 128363  Cd Length: 29  Bit Score: 38.47  E-value: 3.04e-05
                           10        20
                   ....*....|....*....|....*....
gi 564389779    97 CYCRIGACVSGERLTGACGLNGRIYRLCC 125
Cdd:smart00048   1 CYCRRRRCPRRERRIGTCRIRGRRYTFCC 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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