|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
76-255 |
5.77e-48 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
:
Pssm-ID: 214560 Cd Length: 184 Bit Score: 169.08 E-value: 5.77e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210 4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210 81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*
gi 568905676 231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVC 182
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
466-686 |
4.89e-34 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 136.57 E-value: 4.89e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 466 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 545
Cdd:NF038329 107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 546 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 614
Cdd:NF038329 187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 615 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 686
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
725-994 |
7.06e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 90.73 E-value: 7.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 725 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 804
Cdd:NF038329 109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 805 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 884
Cdd:NF038329 185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 885 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 964
Cdd:NF038329 241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308
|
250 260 270
....*....|....*....|....*....|
gi 568905676 965 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 994
Cdd:NF038329 309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
890-1118 |
2.02e-18 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 89.58 E-value: 2.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 890 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 969
Cdd:NF038329 115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 970 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1049
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 1050 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1118
Cdd:NF038329 240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
76-255 |
5.77e-48 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 169.08 E-value: 5.77e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210 4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210 81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*
gi 568905676 231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVC 182
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
466-686 |
4.89e-34 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 136.57 E-value: 4.89e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 466 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 545
Cdd:NF038329 107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 546 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 614
Cdd:NF038329 187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 615 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 686
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
353-679 |
3.63e-28 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 119.24 E-value: 3.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 353 QGLEGIKGEiGEKGEPGAKGDSGLDGLNGQDGLKGDsgpqgppgpkgdKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRG 432
Cdd:NF038329 108 EGLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGE------------TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 433 RRGKtgppgnpgppgpPgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKG 512
Cdd:NF038329 175 PAGK------------D--------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 513 DRGEPGLLGPQGikgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGL 592
Cdd:NF038329 220 PAGEDGPAGPAG-------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGP 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 593 PGLKGDAGPPGisLPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGP 665
Cdd:NF038329 274 DGKDGERGPVG--PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKP 351
|
330
....*....|....
gi 568905676 666 RGLPGLPGTPGMPG 679
Cdd:NF038329 352 DTAPHTPKTPQIPG 365
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
316-624 |
8.52e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 111.92 E-value: 8.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 316 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPp 395
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP- 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 396 gpkgdKGDMGPPGPpaltgsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaS 475
Cdd:NF038329 197 -----RGETGPAGE---------QGPAGPAGPDGEAGPAGE--------------------------------------D 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 476 GPKGEKGDtglpgfpgsvGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGP 555
Cdd:NF038329 225 GPAGPAGD----------GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGP 282
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 556 RGPPGDVGLPGEHGIPGKQGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 624
Cdd:NF038329 283 VGPAGKDGQNGKDGLPGKDGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
725-994 |
7.06e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 90.73 E-value: 7.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 725 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 804
Cdd:NF038329 109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 805 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 884
Cdd:NF038329 185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 885 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 964
Cdd:NF038329 241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308
|
250 260 270
....*....|....*....|....*....|
gi 568905676 965 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 994
Cdd:NF038329 309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
890-1118 |
2.02e-18 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 89.58 E-value: 2.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 890 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 969
Cdd:NF038329 115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 970 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1049
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 1050 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1118
Cdd:NF038329 240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
542-821 |
3.54e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 85.73 E-value: 3.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 542 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 621
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 622 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 701
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 702 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 781
Cdd:NF038329 232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568905676 782 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 821
Cdd:NF038329 278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
767-1009 |
9.78e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 84.19 E-value: 9.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 767 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 846
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 847 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 926
Cdd:NF038329 181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 927 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 1006
Cdd:NF038329 230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305
|
...
gi 568905676 1007 SKG 1009
Cdd:NF038329 306 QNG 308
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
339-669 |
8.35e-08 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 56.19 E-value: 8.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 339 GLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGI 418
Cdd:COG5164 7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 419 QGPQGPPGKEGQRGRRGKTGPPGNPGPPGPPGPPGLQGLQQPFGGyfnkgtgehGASGPKGEKGDTglPGFPGSVGPKGH 498
Cdd:COG5164 87 QGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSG---------GSTTPPGDGGST--PPGPGSTGPGGS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 499 KGEPGEPLTKGEKGDRGEPGLLGPQGIKGepgdpgpPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKG 578
Cdd:COG5164 156 TTPPGDGGSTTPPGPGGSTTPPDDGGSTT-------PPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKT 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 579 EKGDPGGRLGPPGLPGLKGDAGPPGISLP---GKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQG 655
Cdd:COG5164 229 GPKDQRPKTNPIERRGPERPEAAALPAELtalEAENRAANPEPATKTIPETTTVKDLATVLGKKGSDLVTNLMKKGKGTN 308
|
330
....*....|....
gi 568905676 656 PAGEPGIQGPRGLP 669
Cdd:COG5164 309 INAALDFETAATIA 322
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
949-1005 |
4.43e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 4.43e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568905676 949 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 1005
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
548-604 |
6.37e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 41.71 E-value: 6.37e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568905676 548 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 604
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
775-1011 |
9.72e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.09 E-value: 9.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 775 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 854
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 855 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 931
Cdd:COG5164 81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 932 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 1005
Cdd:COG5164 161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240
|
....*.
gi 568905676 1006 GSKGST 1011
Cdd:COG5164 241 ERRGPE 246
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
584-679 |
8.29e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 40.43 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 584 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 663
Cdd:PRK14959 375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447
|
90
....*....|....*..
gi 568905676 664 G-PRGLPGLPGTPGMPG 679
Cdd:PRK14959 448 IpPRPAPRMPEASPVPG 464
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
76-255 |
5.77e-48 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 169.08 E-value: 5.77e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210 4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210 81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*
gi 568905676 231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVC 182
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
466-686 |
4.89e-34 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 136.57 E-value: 4.89e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 466 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 545
Cdd:NF038329 107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 546 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 614
Cdd:NF038329 187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 615 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 686
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
353-679 |
3.63e-28 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 119.24 E-value: 3.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 353 QGLEGIKGEiGEKGEPGAKGDSGLDGLNGQDGLKGDsgpqgppgpkgdKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRG 432
Cdd:NF038329 108 EGLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGE------------TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 433 RRGKtgppgnpgppgpPgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKG 512
Cdd:NF038329 175 PAGK------------D--------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 513 DRGEPGLLGPQGikgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGL 592
Cdd:NF038329 220 PAGEDGPAGPAG-------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGP 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 593 PGLKGDAGPPGisLPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGP 665
Cdd:NF038329 274 DGKDGERGPVG--PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKP 351
|
330
....*....|....
gi 568905676 666 RGLPGLPGTPGMPG 679
Cdd:NF038329 352 DTAPHTPKTPQIPG 365
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
316-624 |
8.52e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 111.92 E-value: 8.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 316 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPp 395
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP- 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 396 gpkgdKGDMGPPGPpaltgsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaS 475
Cdd:NF038329 197 -----RGETGPAGE---------QGPAGPAGPDGEAGPAGE--------------------------------------D 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 476 GPKGEKGDtglpgfpgsvGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGP 555
Cdd:NF038329 225 GPAGPAGD----------GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGP 282
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 556 RGPPGDVGLPGEHGIPGKQGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 624
Cdd:NF038329 283 VGPAGKDGQNGKDGLPGKDGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
725-994 |
7.06e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 90.73 E-value: 7.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 725 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 804
Cdd:NF038329 109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 805 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 884
Cdd:NF038329 185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 885 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 964
Cdd:NF038329 241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308
|
250 260 270
....*....|....*....|....*....|
gi 568905676 965 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 994
Cdd:NF038329 309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
890-1118 |
2.02e-18 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 89.58 E-value: 2.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 890 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 969
Cdd:NF038329 115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 970 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1049
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905676 1050 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1118
Cdd:NF038329 240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
542-821 |
3.54e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 85.73 E-value: 3.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 542 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 621
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 622 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 701
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 702 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 781
Cdd:NF038329 232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568905676 782 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 821
Cdd:NF038329 278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
767-1009 |
9.78e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 84.19 E-value: 9.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 767 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 846
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 847 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 926
Cdd:NF038329 181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 927 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 1006
Cdd:NF038329 230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305
|
...
gi 568905676 1007 SKG 1009
Cdd:NF038329 306 QNG 308
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
339-669 |
8.35e-08 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 56.19 E-value: 8.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 339 GLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGLDGLNGQDGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGI 418
Cdd:COG5164 7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 419 QGPQGPPGKEGQRGRRGKTGPPGNPGPPGPPGPPGLQGLQQPFGGyfnkgtgehGASGPKGEKGDTglPGFPGSVGPKGH 498
Cdd:COG5164 87 QGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSG---------GSTTPPGDGGST--PPGPGSTGPGGS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 499 KGEPGEPLTKGEKGDRGEPGLLGPQGIKGepgdpgpPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKG 578
Cdd:COG5164 156 TTPPGDGGSTTPPGPGGSTTPPDDGGSTT-------PPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKT 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 579 EKGDPGGRLGPPGLPGLKGDAGPPGISLP---GKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQG 655
Cdd:COG5164 229 GPKDQRPKTNPIERRGPERPEAAALPAELtalEAENRAANPEPATKTIPETTTVKDLATVLGKKGSDLVTNLMKKGKGTN 308
|
330
....*....|....
gi 568905676 656 PAGEPGIQGPRGLP 669
Cdd:COG5164 309 INAALDFETAATIA 322
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
949-1005 |
4.43e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 4.43e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568905676 949 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 1005
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
940-994 |
5.08e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 5.08e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 568905676 940 GPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTG 994
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
548-604 |
6.37e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 41.71 E-value: 6.37e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568905676 548 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 604
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
594-644 |
1.50e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.55 E-value: 1.50e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 568905676 594 GLKGDAGPPGIslPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPG 644
Cdd:pfam01391 1 GPPGPPGPPGP--PGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPG 49
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
923-976 |
2.13e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.17 E-value: 2.13e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 568905676 923 EQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQG 976
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
775-1011 |
9.72e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.09 E-value: 9.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 775 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 854
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 855 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 931
Cdd:COG5164 81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 932 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 1005
Cdd:COG5164 161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240
|
....*.
gi 568905676 1006 GSKGST 1011
Cdd:COG5164 241 ERRGPE 246
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
967-1010 |
1.34e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.86 E-value: 1.34e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 568905676 967 GPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGS 1010
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGP 44
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
584-679 |
8.29e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 40.43 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905676 584 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 663
Cdd:PRK14959 375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447
|
90
....*....|....*..
gi 568905676 664 G-PRGLPGLPGTPGMPG 679
Cdd:PRK14959 448 IpPRPAPRMPEASPVPG 464
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
479-529 |
9.83e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.55 E-value: 9.83e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 568905676 479 GEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEP 529
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
|
|
| |
