|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
76-255 |
5.41e-48 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
:
Pssm-ID: 214560 Cd Length: 184 Bit Score: 169.08 E-value: 5.41e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210 4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210 81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*
gi 568905678 231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVC 182
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
448-668 |
2.92e-34 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 137.34 E-value: 2.92e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 448 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 527
Cdd:NF038329 107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 528 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 596
Cdd:NF038329 187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 597 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 668
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
707-976 |
5.33e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.12 E-value: 5.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 707 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 786
Cdd:NF038329 109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 787 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 866
Cdd:NF038329 185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 867 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 946
Cdd:NF038329 241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308
|
250 260 270
....*....|....*....|....*....|
gi 568905678 947 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 976
Cdd:NF038329 309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
872-1100 |
1.30e-18 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 89.96 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 872 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 951
Cdd:NF038329 115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 952 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1031
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 1032 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1100
Cdd:NF038329 240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
76-255 |
5.41e-48 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 169.08 E-value: 5.41e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210 4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210 81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*
gi 568905678 231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVC 182
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
448-668 |
2.92e-34 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 137.34 E-value: 2.92e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 448 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 527
Cdd:NF038329 107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 528 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 596
Cdd:NF038329 187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 597 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 668
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
348-661 |
1.03e-28 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 120.78 E-value: 1.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 348 GQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEgqrgrrgktgppgnpgp 427
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKD----------------- 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 428 pgppgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKGDRGEPGLLGPQGi 507
Cdd:NF038329 180 ------------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAGPAGEDGPAGPAG- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 508 kgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGLPGLKGDAGPPGis 587
Cdd:NF038329 232 ------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGPDGKDGERGPVG-- 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 588 LPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGPRGLPGLPGTPGMP 660
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKPDTAPHTPKTPQIP 364
|
.
gi 568905678 661 G 661
Cdd:NF038329 365 G 365
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
316-606 |
3.40e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 104.22 E-value: 3.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 316 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPpgpkgdKGDMGPPGPpalt 395
Cdd:NF038329 136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP------RGETGPAGE---- 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 396 gsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaSGPKGEKGDtglpgfpgsv 475
Cdd:NF038329 206 -----QGPAGPAGPDGEAGPAGE--------------------------------------DGPAGPAGD---------- 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 476 GPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGK 555
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGK 300
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568905678 556 QGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 606
Cdd:NF038329 301 DGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
707-976 |
5.33e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.12 E-value: 5.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 707 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 786
Cdd:NF038329 109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 787 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 866
Cdd:NF038329 185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 867 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 946
Cdd:NF038329 241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308
|
250 260 270
....*....|....*....|....*....|
gi 568905678 947 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 976
Cdd:NF038329 309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
872-1100 |
1.30e-18 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 89.96 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 872 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 951
Cdd:NF038329 115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 952 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1031
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 1032 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1100
Cdd:NF038329 240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
524-803 |
2.08e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 86.50 E-value: 2.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 524 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 603
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 604 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 683
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 684 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 763
Cdd:NF038329 232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568905678 764 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 803
Cdd:NF038329 278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
749-991 |
7.02e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 84.57 E-value: 7.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 749 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 828
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 829 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 908
Cdd:NF038329 181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 909 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 988
Cdd:NF038329 230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305
|
...
gi 568905678 989 SKG 991
Cdd:NF038329 306 QNG 308
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
860-1103 |
3.64e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 73.02 E-value: 3.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 860 EPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERGPIG---------DTGFPGPEGPSGKPGIN 930
Cdd:NF038329 121 EPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGpagkdgeagAKGPAGEKGPQGPRGET 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 931 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDrGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGT 1010
Cdd:NF038329 201 GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 1011 paDAVSFEEIKHYINQEVlrifeermavflsqlKLPAAmlsaqaHGRPGPPGKDGLPgppgdpgpqgyrGQKGERGEPG- 1089
Cdd:NF038329 280 --RGPVGPAGKDGQNGKD---------------GLPGK------DGKDGQNGKDGLP------------GKDGKDGQPGk 324
|
250
....*....|....*..
gi 568905678 1090 ---IGLPGSPGLPGSSA 1103
Cdd:NF038329 325 dglPGKDGKDGQPGKPA 341
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
339-659 |
8.56e-08 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 56.19 E-value: 8.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 339 GLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRGRRGK 418
Cdd:COG5164 7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 419 TGPpgnpgppgppgppglqglqqpfggyfNKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLT--KGEKGDR 496
Cdd:COG5164 87 QGG--------------------------TRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGgsTTPPGDG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 497 GE-PGLLGPQGIKGEPGDPGPPGLLGSPGLKGQQGPAGSMGPRGPP--GDVGLPGEHGIPGKQGVKG--EKGDPGGRLGP 571
Cdd:COG5164 141 GStPPGPGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPnkGETGTDIPTGGTPRQGPDGpvKKDDKNGKGNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 572 PGLPGLKGDAGPPGISLpgkpgldgnpGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQGPRGLP 651
Cdd:COG5164 221 PDDRGGKTGPKDQRPKT----------NPIERRGPERPEAAALPAELTALEAENRAANPEPATKTIPETTTVKDLATVLG 290
|
....*...
gi 568905678 652 GLPGTPGM 659
Cdd:COG5164 291 KKGSDLVT 298
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
931-987 |
3.58e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.48 E-value: 3.58e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568905678 931 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 987
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
530-586 |
5.16e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 5.16e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568905678 530 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 586
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
757-993 |
8.33e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.48 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 757 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 836
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 837 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 913
Cdd:COG5164 81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 914 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 987
Cdd:COG5164 161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240
|
....*.
gi 568905678 988 GSKGST 993
Cdd:COG5164 241 ERRGPE 246
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
566-661 |
8.29e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 40.05 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 566 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 645
Cdd:PRK14959 375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447
|
90
....*....|....*..
gi 568905678 646 G-PRGLPGLPGTPGMPG 661
Cdd:PRK14959 448 IpPRPAPRMPEASPVPG 464
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
76-255 |
5.41e-48 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 169.08 E-value: 5.41e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 76 ELSGFDLGE-SFALRHAFC-EGDKTCFKLGS-VLLIRDTVKIFPKGLPEEYAIAVMFRVrrsTKKERWFLWKILNQQNMA 152
Cdd:smart00210 4 LLQVFDLPSlSFAIRQVVGpEPGSPAYRLGDpALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAIYDAQNVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 153 QISVVIDGTKKVVEFMFRGAEGDLLNYVFKNRelrPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEK--NSVDFQG 230
Cdd:smart00210 81 QFGLEVDGRANTLLLRYQGVDGKQHTVSFRNL---PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*
gi 568905678 231 RTIIAARASDGKPVDIELHQLRIYC 255
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVC 182
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
448-668 |
2.92e-34 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 137.34 E-value: 2.92e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 448 NKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEPGDPGPPGLLGSPGLKG 527
Cdd:NF038329 107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 528 QQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPG----------GRLGPPGLPGLKGDAGPPGISLP-GKPGLDG 596
Cdd:NF038329 187 PAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGpagpagdgqqGPDGDPGPTGEDGPQGPDGPAGKdGPRGDRG 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 597 NPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPGIQGPRGLPGLPGTPGMPGNDGAPGK 668
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLpGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
348-661 |
1.03e-28 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 120.78 E-value: 1.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 348 GQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEgqrgrrgktgppgnpgp 427
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKD----------------- 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 428 pgppgppglqglqqpfggyfnkgtGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEpltKGEKGDRGEPGLLGPQGi 507
Cdd:NF038329 180 ------------------------GEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGP---DGEAGPAGEDGPAGPAG- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 508 kgepgdpgppgllgspglKGQQGPAGSMGPRGPPGDVGLPGEhgiPGKQGVKGEKGDPggrlGPPGLPGLKGDAGPPGis 587
Cdd:NF038329 232 ------------------DGQQGPDGDPGPTGEDGPQGPDGP---AGKDGPRGDRGEA----GPDGPDGKDGERGPVG-- 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 588 LPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGV-GIPGRTGSQGPAGEPG------IQGPRGLPGLPGTPGMP 660
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPApktpevPQKPDTAPHTPKTPQIP 364
|
.
gi 568905678 661 G 661
Cdd:NF038329 365 G 365
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
316-606 |
3.40e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 104.22 E-value: 3.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 316 EAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPpgpkgdKGDMGPPGPpalt 395
Cdd:NF038329 136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP------RGETGPAGE---- 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 396 gsigiQGPQGPPGKEGQRGRRGKtgppgnpgppgppgppglqglqqpfggyfnkgtgehgaSGPKGEKGDtglpgfpgsv 475
Cdd:NF038329 206 -----QGPAGPAGPDGEAGPAGE--------------------------------------DGPAGPAGD---------- 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 476 GPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEpgdpgppgllgsPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGK 555
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGE------------AGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGK 300
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568905678 556 QGVKGEKGDpggrlgpPGLPGLKGDAGPPGI-SLPGKPGLDGNPGSPGPRGP 606
Cdd:NF038329 301 DGKDGQNGK-------DGLPGKDGKDGQPGKdGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
707-976 |
5.33e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.12 E-value: 5.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 707 GLKSIKGDdGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPpgl 786
Cdd:NF038329 109 GLQQLKGD-GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA--- 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 787 tgrTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngmsslykiQGGVNVPGYPGPPGPPGPKGDPGPVGEPGAMGL 866
Cdd:NF038329 185 ---KGPAGEKGPQGPRGETGPAGEQG---------------------PAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 867 PGLEGFPGVKGDRGPAGPPGIAGisgkpgapgppgVPGEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPG 946
Cdd:NF038329 241 PGPTGEDGPQGPDGPAGKDGPRG------------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNG 308
|
250 260 270
....*....|....*....|....*....|
gi 568905678 947 DRGPKGERGDQGIPGDRGPQGERGKPGLTG 976
Cdd:NF038329 309 KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
872-1100 |
1.30e-18 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 89.96 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 872 FPGVKGDRGPAGPPGiagisgkpgapgppgvpgEQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPK 951
Cdd:NF038329 115 GDGEKGEPGPAGPAG------------------PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 952 GERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGTPADAvsfeeikhyinqevlri 1031
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDG----------------- 239
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568905678 1032 feermavflsqlkLPAAMLSAQAHGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI----GLPGSPGLPG 1100
Cdd:NF038329 240 -------------DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPagkdGQNGKDGLPG 299
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
524-803 |
2.08e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 86.50 E-value: 2.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 524 GLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGisLPGKPGLDGNPGSPGP 603
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERG----EKGPAGPQGEAGPQG--PAGKDGEAGAKGPAGE 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 604 RGPKGERGLPGLHGSPGDTGPPGvgipgrtgsqgPAGEPGIQGPRGLPGLPGtpgmpgndgapgkdgkpglpgppgdpia 683
Cdd:NF038329 191 KGPQGPRGETGPAGEQGPAGPAG-----------PDGEAGPAGEDGPAGPAG---------------------------- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 684 lpllgdigallknfcgncqanvpglksiKGDDGSTGEPGKYDPAARKGDvgprgpPGFPGREGPKGSKGERGYPGIHGEK 763
Cdd:NF038329 232 ----------------------------DGQQGPDGDPGPTGEDGPQGP------DGPAGKDGPRGDRGEAGPDGPDGKD 277
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568905678 764 GDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKG 803
Cdd:NF038329 278 GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDG 317
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
749-991 |
7.02e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 84.57 E-value: 7.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 749 GSKGERGYPGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGppgppgvplnegngms 828
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDG---------------- 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 829 slykiqggvnvpgypgppgppgpkgdpgpvgEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGE 908
Cdd:NF038329 181 -------------------------------EAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 909 RGPiGDTGFPGPEGPSGKPGINGKDGLPGAQGimgKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG 988
Cdd:NF038329 230 AGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDG---PRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDG 305
|
...
gi 568905678 989 SKG 991
Cdd:NF038329 306 QNG 308
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
860-1103 |
3.64e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 73.02 E-value: 3.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 860 EPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERGPIG---------DTGFPGPEGPSGKPGIN 930
Cdd:NF038329 121 EPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGpagkdgeagAKGPAGEKGPQGPRGET 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 931 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDrGPQGERGKPGLTGMKGAIGPVGPAGSKGSTGPPGHQGPPGNPGIPGT 1010
Cdd:NF038329 201 GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 1011 paDAVSFEEIKHYINQEVlrifeermavflsqlKLPAAmlsaqaHGRPGPPGKDGLPgppgdpgpqgyrGQKGERGEPG- 1089
Cdd:NF038329 280 --RGPVGPAGKDGQNGKD---------------GLPGK------DGKDGQNGKDGLP------------GKDGKDGQPGk 324
|
250
....*....|....*..
gi 568905678 1090 ---IGLPGSPGLPGSSA 1103
Cdd:NF038329 325 dglPGKDGKDGQPGKPA 341
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
339-659 |
8.56e-08 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 56.19 E-value: 8.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 339 GLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRGRRGK 418
Cdd:COG5164 7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 419 TGPpgnpgppgppgppglqglqqpfggyfNKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLT--KGEKGDR 496
Cdd:COG5164 87 QGG--------------------------TRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGgsTTPPGDG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 497 GE-PGLLGPQGIKGEPGDPGPPGLLGSPGLKGQQGPAGSMGPRGPP--GDVGLPGEHGIPGKQGVKG--EKGDPGGRLGP 571
Cdd:COG5164 141 GStPPGPGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPnkGETGTDIPTGGTPRQGPDGpvKKDDKNGKGNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 572 PGLPGLKGDAGPPGISLpgkpgldgnpGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQGPRGLP 651
Cdd:COG5164 221 PDDRGGKTGPKDQRPKT----------NPIERRGPERPEAAALPAELTALEAENRAANPEPATKTIPETTTVKDLATVLG 290
|
....*...
gi 568905678 652 GLPGTPGM 659
Cdd:COG5164 291 KKGSDLVT 298
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
320-651 |
8.25e-07 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 53.11 E-value: 8.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 320 PGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIG 399
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 400 IQGPQGPPGKEGQRGRRGKTGPPGNPGPPGPPGPPGLQGLQQPFGGyfnkgtgehGASGPKGEKGDTglPGFPGSVGPKG 479
Cdd:COG5164 86 NQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSG---------GSTTPPGDGGST--PPGPGSTGPGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 480 HKGEPGEPLTKGEKGDRGEPGLLGPQGIKGepgdpgpPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVK 559
Cdd:COG5164 155 STTPPGDGGSTTPPGPGGSTTPPDDGGSTT-------PPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGK 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 560 GEKGDPGGRLGPPGLPGLKGDAGPPGISLP---GKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQ 636
Cdd:COG5164 228 TGPKDQRPKTNPIERRGPERPEAAALPAELtalEAENRAANPEPATKTIPETTTVKDLATVLGKKGSDLVTNLMKKGKGT 307
|
330
....*....|....*
gi 568905678 637 GPAGEPGIQGPRGLP 651
Cdd:COG5164 308 NINAALDFETAATIA 322
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
931-987 |
3.58e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.48 E-value: 3.58e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568905678 931 GKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPA 987
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
922-976 |
4.11e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 4.11e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 568905678 922 GPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTG 976
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
530-586 |
5.16e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 5.16e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568905678 530 GPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGgrlgPPGLPGLKGDAGPPGI 586
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPG----PPGPPGPPGPPGAPGA 53
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
576-626 |
1.20e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.94 E-value: 1.20e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 568905678 576 GLKGDAGPPGIslPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPG 626
Cdd:pfam01391 1 GPPGPPGPPGP--PGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPG 49
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
905-958 |
1.80e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.55 E-value: 1.80e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 568905678 905 EQGERGPIGDTGFPGPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQG 958
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
757-993 |
8.33e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.48 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 757 PGIHGEKGDEGLQGIPGLSGAPGPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPgvplnEGNGMSSLYKIQGG 836
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPA-----GNQGATGPAQNQGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 837 VNVPGYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERG---PIG 913
Cdd:COG5164 81 TTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGsttPPG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 914 DTGFPGPEGPSGKPGINGKDGL--PGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKP----GLTGMKGAIGPVGPA 987
Cdd:COG5164 161 DGGSTTPPGPGGSTTPPDDGGSttPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPI 240
|
....*.
gi 568905678 988 GSKGST 993
Cdd:COG5164 241 ERRGPE 246
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
949-992 |
1.10e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.24 E-value: 1.10e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 568905678 949 GPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAGSKGS 992
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGP 44
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
461-511 |
8.19e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.55 E-value: 8.19e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 568905678 461 GEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGEPGLLGPQGIKGEP 511
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAP 51
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
566-661 |
8.29e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 40.05 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568905678 566 GGRLGPPGLPGLKGDAGPPGISLPgkpgldgNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGPAGEPGIQ 645
Cdd:PRK14959 375 GGGASAPSGSAAEGPASGGAATIP-------TPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSG 447
|
90
....*....|....*..
gi 568905678 646 G-PRGLPGLPGTPGMPG 661
Cdd:PRK14959 448 IpPRPAPRMPEASPVPG 464
|
|
| |
