|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
161-805 |
1.07e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.74 E-value: 1.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 161 LVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQVeSKQNTELAKL 240
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANEI-SRLEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 241 RQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASH-----------------KESEEALQKRLEEVTRE 303
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELesleaeleeleaeleelESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 304 LCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS--SEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQ 381
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQeiEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 382 AQDTQASHA------EANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLR--------EKNWKAMEALALAERA 447
Cdd:TIGR02168 468 EELEEAEQAldaaerELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGvlselisvDEGYEAAIEAALGGRL 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 448 CEEKLRSLTQAKEESEkqlHLAEAQTKETLLALLPGLSI----SAHQNYAEWLQEFKEKGSELLKKPPTLEPSMD----- 518
Cdd:TIGR02168 548 QAVVVENLNAAKKAIA---FLKQNELGRVTFLPLDSIKGteiqGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 519 --IVLKLREAEETQNSLQAEcdqYRTILAE--------------TEGMLKDLQKSVEEEERvwKAKVGAAEEELHKSRVT 582
Cdd:TIGR02168 625 vlVVDDLDNALELAKKLRPG---YRIVTLDgdlvrpggvitggsAKTNSSILERRREIEEL--EEKIEELEEKIAELEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 583 VKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELAL 662
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 663 VRQQLSDMRSHVEDgdvaGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRaagp 742
Cdd:TIGR02168 780 AEAEIEELEAQIEQ----LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS---- 851
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918956 743 lessgkEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAED 805
Cdd:TIGR02168 852 ------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
172-760 |
2.91e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.45 E-value: 2.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 172 QARMQASYRDHVKEVQQLQG-----KIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSK 246
Cdd:COG1196 208 QAEKAERYRELKEELKELEAellllKLRELEAELEEL-EAELEELEAELEELEAELAELEAELEELRL-ELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 247 VNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQ 326
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 327 RVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQV 406
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 407 ScLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERAcEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSI 486
Cdd:COG1196 446 E-AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE-LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 487 SAHQNYAEWLQEFKEKGSELLkkppTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWK 566
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAAL----AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 567 AKVGAAEEELHKSRVTVKHLEDIVEK--LKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQS 644
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRtlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 645 QLDEAKSEAQKQSDELALVRQQLSDMRSHVEDgdvagspavppAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQ 724
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAE-----------AEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580 590
....*....|....*....|....*....|....*.
gi 568918956 725 RtacriqEELEKLRAAGPLESSGKEEITQLKERLEK 760
Cdd:COG1196 749 E------EEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
212-811 |
1.91e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 81.34 E-value: 1.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 212 QQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKElVEKSEASRQEEQQRKALEAKAATFEKQV-----LQLQASH 286
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEE-ARKAEDARKAEEARKAEDAKRVEIARKAedarkAEEARKA 1172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 287 KESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKeaRAENSQL 366
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAK--KAEEERN 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 367 TERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLR---EKNWKAMEALAL 443
Cdd:PTZ00121 1251 NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKkadEAKKKAEEAKKK 1330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 444 AERA---CEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV 520
Cdd:PTZ00121 1331 ADAAkkkAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 521 LKLREAEETQNSLQAECDQYRTI-----LAETEGMLKDLQKSVEEEERVWKAKVGAaeEELHKSRVTVKHLEDI--VEKL 593
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKAdeakkKAEEAKKADEAKKKAEEAKKAEEAKKKA--EEAKKADEAKKKAEEAkkADEA 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 594 KGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLrqlllESQSQLDEA-KSEAQKQSDEL--------ALVR 664
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA-----EEAKKADEAkKAEEKKKADELkkaeelkkAEEK 1563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 665 QQLSDMRSHVEDGDVAGSPA--VPPAEQDPMKLKTQLERTEATLEAEQTRRQkltaefEEAQRTACRIQEELEKLRAAGP 742
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAeeAKKAEEARIEEVMKLYEEEKKMKAEEAKKA------EEAKIKAEELKKAEEEKKKVEQ 1637
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568918956 743 LESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAEDGSSSKE 811
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-802 |
1.42e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 111 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKkQLVAREQEIAAVQARMQASYRDHVKEVQQLQ 190
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE-ELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 191 GKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQvesKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEA 270
Cdd:TIGR02168 400 NEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELK---ELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 271 KAATFEKQVLQLQAsHKESEEALQKRLEEVTRELcRAQTSHANLRADAEKAQEQQQRVAE---------LHSKLQSSEVE 341
Cdd:TIGR02168 476 ALDAAERELAQLQA-RLDSLERLQENLEGFSEGV-KALLKNQSGLSGILGVLSELISVDEgyeaaieaaLGGRLQAVVVE 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 342 ------------VKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQA------------------SHAE 391
Cdd:TIGR02168 554 nlnaakkaiaflKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllggvlvvdDLDN 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 392 ANQQQTRLKELESQVS------------------------CLEKETSELKEAMEQQKGKNNDLReknwKAMEALALAERA 447
Cdd:TIGR02168 634 ALELAKKLRPGYRIVTldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELE----KALAELRKELEE 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 448 CEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAewLQEFKEKGSELLKKPPTLEPsmdivlKLREAE 527
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE--LTELEAEIEELEERLEEAEE------ELAEAE 781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 528 ETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEER---VWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVR 604
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 605 EHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDgdvagspa 684
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-------- 933
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 685 vppAEQDPMKLKTQL-ERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLraaGPLESSGKEEITQLKERLEKEKR 763
Cdd:TIGR02168 934 ---LEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL---GPVNLAAIEEYEELKERYDFLTA 1007
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 568918956 764 LTSDLGRAAIKLQELL-KTTQEQLTKEKDTVKKLQEQLGK 802
Cdd:TIGR02168 1008 QKEDLTEAKETLEEAIeEIDREARERFKDTFDQVNENFQR 1047
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
98-660 |
2.29e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 2.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 98 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQA 177
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 178 SYRdhvkEVQQLQGKIRTLQEQLENgpntqlarLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEA 257
Cdd:COG1196 314 LEE----RLEELEEELAELEEELEE--------LEEELEELEEELEEAEEELEEAEA-ELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 258 SRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS 337
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 338 SEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELK 417
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 418 EAMEQQKGKNNDLREknwkAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQNYAEWLQ 497
Cdd:COG1196 541 EAALAAALQNIVVED----DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 498 EFkekGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAEcdqyRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELH 577
Cdd:COG1196 617 VL---GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE----GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 578 KSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQS 657
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
...
gi 568918956 658 DEL 660
Cdd:COG1196 770 ERL 772
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
108-791 |
1.87e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 108 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 187
Cdd:PTZ00121 1154 VEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE 1233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 188 QLQGKIRTLQeQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNkELVEKSEASRQEEQQRKA 267
Cdd:PTZ00121 1234 EAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD-EAKKAEEKKKADEAKKKA 1311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 268 LEAKAATFEKQVLQlqaSHKESEEALQKRLEEvTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKlqssevEVKSKCE 347
Cdd:PTZ00121 1312 EEAKKADEAKKKAE---EAKKKADAAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE------EAKKKAD 1381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 348 ELSSLHGQLKEARAENSQLTERIRSIEALLEAgqaqdtqashAEANQQQTRLKELESQVscleKETSELKEAMEQQKgKN 427
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKA----------AAAKKKADEAKKKAEEK----KKADEAKKKAEEAK-KA 1446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 428 NDLREKNWKAMEALALAERAceEKLRSLTQAKEESEKQLHLAEAQTKEtllallpglsisahqnyaewlQEFKEKGSELL 507
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKA--EEAKKADEAKKKAEEAKKADEAKKKA---------------------EEAKKKADEAK 1503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 508 KKpptlEPSMDIVLKLREAEETQNSLQAEcdqyrtiLAETEGMLKDLQKS--VEEEERVWKAKVGAAEEELHKSRVTVKH 585
Cdd:PTZ00121 1504 KA----AEAKKKADEAKKAEEAKKADEAK-------KAEEAKKADEAKKAeeKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 586 LEDIVEKLKG--ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAglrqlllESQSQLDEAKSEAQKQSDELALV 663
Cdd:PTZ00121 1573 EEDKNMALRKaeEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA-------EELKKAEEEKKKVEQLKKKEAEE 1645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 664 RQQLSDMRSHVEDGDVAGSPAVPPAEQDpmklKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPL 743
Cdd:PTZ00121 1646 KKKAEELKKAEEENKIKAAEEAKKAEED----KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 568918956 744 ---ESSGKEEITQLKERLEKEKRLTSDLgraaiKLQELLKTTQEQLTKEKD 791
Cdd:PTZ00121 1722 kkaEEENKIKAEEAKKEAEEDKKKAEEA-----KKDEEEKKKIAHLKKEEE 1767
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
100-654 |
4.95e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 4.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 100 KATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASY 179
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 180 R----DHVKEVQQLQGKIRTLQEQLENGPNTQLARLQQEnsilrdalnQATSQVESKQNTELAKLRQELSKVNKELVEKS 255
Cdd:PTZ00121 1403 DkkkaDELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE---------EAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 256 EASRQEEQQRKALEA--KAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHS 333
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAkkKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 334 KLQSSEVEVKSKCEELSSLHGQLKEA--RAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEK 411
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 412 ETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKEtllallpglsisahQN 491
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--------------AE 1699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 492 YAEWLQEFKEKGSELLKKPPTLEPSMDI-VLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVG 570
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELKKAEEEnKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 571 AAEEELHKsrvtvkhledivEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAK 650
Cdd:PTZ00121 1780 VIEEELDE------------EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEAD 1847
|
....
gi 568918956 651 SEAQ 654
Cdd:PTZ00121 1848 AFEK 1851
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
236-790 |
1.75e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.62 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 236 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLqashKESEEALQKRLEEVTrELCRAQTSHANLR 315
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL----KKEIEELEEKVKELK-ELKEKAEEYIKLS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 316 ADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAgqAQDTQASHAEANQQ 395
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL--YEEAKAKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 396 QTRLK-----ELESQVSCLEKETSELKEAMEQQKGKNNDLREKN---WKAMEALALAERACEEKLRSLTQAKEESEKQLH 467
Cdd:PRK03918 378 KKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIkelKKAIEELKKAKGKCPVCGRELTEEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 468 LAEAQTKETLLALLpglsisahQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNS-----LQAECDQYRT 542
Cdd:PRK03918 458 TAELKRIEKELKEI--------EEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKynleeLEKKAEEYEK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 543 I---LAETEGMLKDLQKSVEEEERVwKAKVGAAEEELHKSRVTVKHLEDIVEKLKgeLESSDQVREHTSHLEAELEKHMA 619
Cdd:PRK03918 530 LkekLIKLKGEIKSLKKELEKLEEL-KKKLAELEKKLDELEEELAELLKELEELG--FESVEELEERLKELEPFYNEYLE 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 620 AASAEcqnyaKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGspavppAEQDPMKLKTQL 699
Cdd:PRK03918 607 LKDAE-----KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE------LREEYLELSREL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 700 ERTEATLEAEQTRRqkltaefEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAI-KLQEL 778
Cdd:PRK03918 676 AGLRAELEELEKRR-------EEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALsKVGEI 748
|
570
....*....|..
gi 568918956 779 LKTTQEQLTKEK 790
Cdd:PRK03918 749 ASEIFEELTEGK 760
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
180-800 |
5.17e-09 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 60.24 E-value: 5.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 180 RDHVKEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVESKQNTeLAKLRQELSKVNKELVEKSEASR 259
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEFNT-LESAELRLSHLHFGYKSDETLIASRQEERQET-SAELNQLLRTLDDQWKEKRDELN 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 260 QE-----------EQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEK-----AQE 323
Cdd:pfam12128 308 GElsaadaavakdRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRrrskiKEQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 324 QQQRVAELHSKLQSS-EVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEA------GQAQDTQASHAEANQQQ 396
Cdd:pfam12128 388 NNRDIAGIKDKLAKIrEARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSrlgelkLRLNQATATPELLLQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 397 TRLKELESQVSCLEKETSELKEAMEQQKgknnDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHlaeaqtkeT 476
Cdd:pfam12128 468 NFDERIERAREEQEAANAEVERLQSELR----QARKRRDQASEALRQASRRLEERQSALDELELQLFPQAG--------T 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 477 LLALLpglsisaHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV----------LKLREAEETQNSLQAECDQYRTILAE 546
Cdd:pfam12128 536 LLHFL-------RKEAPDWEQSIGKVISPELLHRTDLDPEVWDGsvggelnlygVKLDLKRIDVPEWAASEEELRERLDK 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 547 TEGML---KDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELEsSDQVRehtshLEAELEKHMAAASA 623
Cdd:pfam12128 609 AEEALqsaREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ-SEKDK-----KNKALAERKDSANE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 624 ECQNYAKEvagLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMK-LKTQLERT 702
Cdd:pfam12128 683 RLNSLEAQ---LKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKaLETWYKRD 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 703 EATLEAEQTRRQKLTAEFEEAQRTACRI-QEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKT 781
Cdd:pfam12128 760 LASLGVDPDVIAKLKREIRTLERKIERIaVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKL 839
|
650
....*....|....*....
gi 568918956 782 TQEQLTKEKDTVKKLQEQL 800
Cdd:pfam12128 840 RRAKLEMERKASEKQQVRL 858
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
184-420 |
6.63e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 6.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 184 KEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVeSKQNTELAKLRQELSKVNKELvekSEASRQEEQ 263
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAE-LEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAEL---AELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 264 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVK 343
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568918956 344 skceELSSLHGQLKEARAENSQLTERIRSIEALLEagqaQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAM 420
Cdd:COG4942 175 ----ELEALLAELEEERAALEALKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
184-631 |
8.56e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 8.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 184 KEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQ--E 261
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKkaE 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 262 EQQRKALEAKAATFEKQV---LQLQASHKESEEALQKRLEEVTR-ELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS 337
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKadeAKKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 338 SEV--EVKSKCEELSSLHGQLKEA-----RAENSQLTERIRSIEALLEAGQAQDT-QASHAEANQQQTRLKELESQVSCL 409
Cdd:PTZ00121 1482 AKKadEAKKKAEEAKKKADEAKKAaeakkKADEAKKAEEAKKADEAKKAEEAKKAdEAKKAEEKKKADELKKAEELKKAE 1561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 410 EKETSELKEAMEQQKGKNNDLREKNWKAMEA--LALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSIS 487
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEAriEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 488 AHQNYAEWLQEFKEKGSELLKKPPTLEPSMDivlKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKA 567
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEE---DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568918956 568 KVGAAEEELHKSRVTVKHLEDIVEKLKG-ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKE 631
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAeEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
319-799 |
1.06e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 319 EKAQEQQQRVAELHSKLQSSEVEVKSKCEELSS--LHGQLKEARAENSQLTERIRSIEALLEA-----GQAQDTQASHAE 391
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSLDQLKAQIEEKEEkdLHERLNGLESELAELDEEIERYEEQREQaretrDEADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 392 ANQQQTRLK----ELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALAL---AERACEEKLRSLTQAKEESEK 464
Cdd:PRK02224 249 RREELETLEaeieDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddaDAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 465 QL---------HLAEAQTKETLLALLPGLSISAH----------QNYAEWLQEFKEKGSELLKKPPTLEPSM-DIVLKLR 524
Cdd:PRK02224 329 RLeecrvaaqaHNEEAESLREDADDLEERAEELReeaaeleselEEAREAVEDRREEIEELEEEIEELRERFgDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 525 EAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKA-KVGAAEEELHKSRV--TVKHLEDIVEKLKGELEssd 601
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgKCPECGQPVEGSPHveTIEEDRERVEELEAELE--- 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 602 QVREHTSHLEAELEKHMAAASAEcqnyaKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAG 681
Cdd:PRK02224 486 DLEEEVEEVEERLERAEDLVEAE-----DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 682 SPAVPPAEQDPMKLKTqLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEeitQLKERLEKE 761
Cdd:PRK02224 561 AEAEEEAEEAREEVAE-LNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRE---RLAEKRERK 636
|
490 500 510
....*....|....*....|....*....|....*....
gi 568918956 762 KRLTSDLGRAAI-KLQELLKTTQEQLTKEKDTVKKLQEQ 799
Cdd:PRK02224 637 RELEAEFDEARIeEAREDKERAEEYLEQVEEKLDELREE 675
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
180-375 |
1.53e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 180 RDHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASR 259
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIE-----LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 260 QEEQQRKALEAKAATFEKQVLQLQASHKES----EEALQKRLEEVTRELCRAQTSHANLRADAEKA-----------QEQ 324
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAALglplpasaeefAAL 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568918956 325 QQRVAELHSKLQSSEVEVKskcEELSSLHGQLKEARAENSQLTERIRSIEA 375
Cdd:COG4913 386 RAEAAALLEALEEELEALE---EALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
233-465 |
3.30e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 3.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 233 QNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKEseeaLQKRLEEVTRELCRAQTSHA 312
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 313 NLRADAEKAQEQ-QQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQAShAE 391
Cdd:COG4942 94 ELRAELEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE-AE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918956 392 ANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLReknwKAMEALALAERACEEKLRSLTQAKEESEKQ 465
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
179-423 |
3.85e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 3.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 179 YRDHVKEVQQLQGKIRTLQEQLE--NGPNTQLARLQQENSILRDALNQATSQVESKQntELAKLRQELSKVN-----KEL 251
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDdlERAHEALEDAREQIELLEPIRELAERYAAARE--RLAELEYLRAALRlwfaqRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 252 VEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQ----KRLEEVTRELCRAQTSHANLRadaEKAQEQQQR 327
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERE---RRRARLEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 328 VAELHSKLQSSEvevkskcEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQashaEANQQQTRLKELESQVS 407
Cdd:COG4913 368 LAALGLPLPASA-------EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRR----ELRELEAEIASLERRKS 436
|
250
....*....|....*.
gi 568918956 408 CLEKETSELKEAMEQQ 423
Cdd:COG4913 437 NIPARLLALRDALAEA 452
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
109-419 |
4.20e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 4.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 109 AILKRQLEEKEKLlATEQEDAAVAKSKLRELNK----EMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQ---ASYRD 181
Cdd:TIGR02169 191 LIIDEKRQQLERL-RREREKAERYQALLKEKREyegyELLKEKEALERQKEAIERQLASLEEELEKLTEEISeleKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 182 HVKEVQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQE 261
Cdd:TIGR02169 270 IEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE-RLAKLEAEIDKLLAEIEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 262 EQQRKALEA----KAATFEKQVLQLQASHKESEE------ALQKRLEEVTRELCRAQTshaNLRADAEKAQEQQQRVAEL 331
Cdd:TIGR02169 349 RKRRDKLTEeyaeLKEELEDLRAELEEVDKEFAEtrdelkDYREKLEKLKREINELKR---ELDRLQEELQRLSEELADL 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 332 HSKLQSSEvevkskcEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQAShAEANQQQTRLKELESQVSCLEK 411
Cdd:TIGR02169 426 NAAIAGIE-------AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK-EEYDRVEKELSKLQRELAEAEA 497
|
....*...
gi 568918956 412 ETSELKEA 419
Cdd:TIGR02169 498 QARASEER 505
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
160-461 |
4.85e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 4.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 160 QLVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGPNtQLARLQQENSILRDALNQATSQVESKQNtELAK 239
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK-EIEQLEQEEEKLKERLEELEEDLSSLEQ-EIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 240 LRQELSKVNKELVEKSEASRQEEQQRKALEAKAAtfEKQVLQLQAsHKESEEALQKRLEEVTRELCRAQTSHANLRADAE 319
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQA-ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 320 KA-QEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQdtqashaeANQQQTR 398
Cdd:TIGR02169 833 KEiQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ--------LRELERK 904
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918956 399 LKELESQVSCLEKETSELKEAMEQQKGKNNDLrEKNWKAMEALAlAERACEEKLRSLTQAKEE 461
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAKLEALEEELSEI-EDPKGEDEEIP-EEELSLEDVQAELQRVEE 965
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
111-614 |
7.10e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 7.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 111 LKRQLEEKE------KLLATEQEDAAV-AKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHV 183
Cdd:PRK02224 192 LKAQIEEKEekdlheRLNGLESELAELdEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 184 KEVQQLQGKIRTLQEQLEngpntqlaRLQQENSILRdalnqATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEeQ 263
Cdd:PRK02224 272 REREELAEEVRDLRERLE--------ELEEERDDLL-----AEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA-A 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 264 QRKALEAKAATFEKQVLQLQASHKESE-EALQKRLEEVTRELCRAQTSHANLRADAEKAQEqqqRVAELHSKLQSSEVEV 342
Cdd:PRK02224 338 QAHNEEAESLREDADDLEERAEELREEaAELESELEEAREAVEDRREEIEELEEEIEELRE---RFGDAPVDLGNAEDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 343 KSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQ----AQDTQAS-HAEANQQ--------QTRLKELESQVSCL 409
Cdd:PRK02224 415 EELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecGQPVEGSpHVETIEEdrerveelEAELEDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 410 EKETSELKEAMEQQKGKNnDLREKNWKAMEALALAERACEEK-------------LRSLTQAKEESEKQLHLAEAQTKET 476
Cdd:PRK02224 495 EERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKreraeelreraaeLEAEAEEKREAAAEAEEEAEEAREE 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 477 LLALLPGL---------------SISAHQNYAEWLQEFKEKGSELLKKP----PTLEPSMDIVLKLREA--EETQNSLQA 535
Cdd:PRK02224 574 VAELNSKLaelkerieslerirtLLAAIADAEDEIERLREKREALAELNderrERLAEKRERKRELEAEfdEARIEEARE 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 536 ECDQYRTILAETEGMLKDLqksvEEEERVWKAKVGAAE---EELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEA 612
Cdd:PRK02224 654 DKERAEEYLEQVEEKLDEL----REERDDLQAEIGAVEnelEELEELRERREALENRVEALEALYDEAEELESMYGDLRA 729
|
..
gi 568918956 613 EL 614
Cdd:PRK02224 730 EL 731
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
163-333 |
9.72e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 9.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 163 AREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQ 242
Cdd:COG4913 267 ARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARL-EAELERLEARLDALREELDELEAQIRGNGGDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 243 ELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQ 322
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
170
....*....|.
gi 568918956 323 EQQQRVAELHS 333
Cdd:COG4913 426 AEIASLERRKS 436
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
136-610 |
1.10e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 136 LRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARmQASYRDHVKEVQQLQGKIRTLQEQLENGPNT-QLARLQQE 214
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEELREElEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 215 NSILRDALNQATSQVESKQnTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQ 294
Cdd:COG4717 127 LLPLYQELEALEAELAELP-ERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 295 KRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELhsklqssevEVKSKCEELSSLHGQLKEARAENSQLTERIRSIE 374
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALE---------ERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 375 AL------LEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERAC 448
Cdd:COG4717 277 GVlflvlgLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 449 EEKLRSLTQAKEESEKQ--LHLAEAQTKETLLALLpglsiSAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIV------ 520
Cdd:COG4717 357 EELEEELQLEELEQEIAalLAEAGVEDEEELRAAL-----EQAEEYQELKEELEELEEQLEELLGELEELLEALdeeele 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 521 LKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKS-----VEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLkg 595
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEEDgelaeLLQELEELKAELRELAEEWAALKLALELLEEAREEY-- 509
|
490
....*....|....*
gi 568918956 596 ELESSDQVREHTSHL 610
Cdd:COG4717 510 REERLPPVLERASEY 524
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
111-345 |
1.39e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 111 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASekakaaageakVKKQLVAREQEIAAVQARMQASyrdhVKEVQQLQ 190
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAA-----------LARRIRALEQELAALEAELAEL----EKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 191 GKIRTLQEQLENgpntQLARLQQENSILRDALnqatsQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEA 270
Cdd:COG4942 97 AELEAQKEELAE----LLRALYRLGRQPPLAL-----LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568918956 271 KAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSK 345
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
112-378 |
2.32e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 112 KRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAsekakaaageakvkkQLVAREQEIAAVQArmqasYRDHVKEVQQLQG 191
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD---------------ALQERREALQRLAE-----YSWDEIDVASAER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 192 KIRTLQEQLEN--GPNTQLARLQQENSILRDALNQATSQVESKQ------NTELAKLRQELSKVNKELVEKSEASRQEEQ 263
Cdd:COG4913 669 EIAELEAELERldASSDDLAALEEQLEELEAELEELEEELDELKgeigrlEKELEQAEEELDELQDRLEAAEDLARLELR 748
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 264 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSH--------ANLRADAEKAQEqqqrVAELHSKL 335
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFnrewpaetADLDADLESLPE----YLALLDRL 824
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568918956 336 QSSEV--------EVKSKC--EELSSLHGQLKEARAEnsqLTERIRSIEALLE 378
Cdd:COG4913 825 EEDGLpeyeerfkELLNENsiEFVADLLSKLRRAIRE---IKERIDPLNDSLK 874
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
169-455 |
3.36e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.07 E-value: 3.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 169 AAVQARMQAsyrdhVKEVQQLQGKIRTLQEQLENGPNT--QLARLQQENSILRDALNQATSQVESKQnTELAKL------ 240
Cdd:PRK11281 39 ADVQAQLDA-----LNKQKLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLRQAQ-AELEALkddnde 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 241 --RQELSKVNKELVEKSEASRQEEQQRkaLEAKAATFEKQVLQLQASHKESEEAL---QKRLEEVTRELCRAQTSHANLR 315
Cdd:PRK11281 113 etRETLSTLSLRQLESRLAQTLDQLQN--AQNDLAEYNSQLVSLQTQPERAQAALyanSQRLQQIRNLLKGGKVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 316 ADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELssLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQ 395
Cdd:PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDL--LQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQ 268
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918956 396 QTRLKELESQVscLEKETS---ELKEAMEQQKGKNN-----DLREKNWkaMEALALAERACEEKLRSL 455
Cdd:PRK11281 269 DEAARIQANPL--VAQELEinlQLSQRLLKATEKLNtltqqNLRVKNW--LDRLTQSERNIKEQISVL 332
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
160-375 |
4.59e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 160 QLVAREQEIAAVQARMQAsYR------DHVKEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQV-ESK 232
Cdd:COG3206 183 QLPELRKELEEAEAALEE-FRqknglvDLSEEAKLLLQQLSELESQLAE-ARAELAEAEARLAALRAQLGSGPDALpELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 233 QNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVlqlqashkesEEALQKRLEEVTRELCRAQTSHA 312
Cdd:COG3206 261 QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL----------QQEAQRILASLEAELEALQAREA 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918956 313 NLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEA 375
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
237-423 |
4.65e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 237 LAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKqvLQLQASHKESEEALQKRLEEVTRELcraqtshANLRA 316
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQR--LAEYSWDEIDVASAEREIAELEAEL-------ERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 317 DAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQ 396
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180 190
....*....|....*....|....*....|
gi 568918956 397 TR---LKELESQVSCLEKETSELKEAMEQQ 423
Cdd:COG4913 763 VErelRENLEERIDALRARLNRAEEELERA 792
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
236-805 |
5.59e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 236 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEE--ALQKRLEEVTRELCRAQTSHAN 313
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiKLSEFYEEYLDELREIEKRLSR 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 314 LRADAEKAQEQQQRVAELHSKLQssevEVKSKCEELSSLHGQLKEaraeNSQLTERIRSIEALLEAGQAQDTQASHAEAN 393
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLE----ELKKKLKELEKRLEELEE----RHELYEEAKAKKEELERLKKRLTGLTPEKLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 394 QQqtrLKELESQVSCLEKETSELKEAMEQQKGKNNDLReknwKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQt 473
Cdd:PRK03918 391 KE---LEELEKAKEEIEEEISKITARIGELKKEIKELK----KAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELK- 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 474 ketllallpglsisahqNYAEWLQEFKEKGSELLKKPPTLEpsmdivlKLREAEETQNSLQAECDQYRTILAETEGM-LK 552
Cdd:PRK03918 463 -----------------RIEKELKEIEEKERKLRKELRELE-------KVLKKESELIKLKELAEQLKELEEKLKKYnLE 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 553 DLQKSVEEEERVwkakvgaaEEELHKSRVTVKHLEDIVEKLKgELESSdqvrehtshlEAELEKHMAAASAECQNYAKEv 632
Cdd:PRK03918 519 ELEKKAEEYEKL--------KEKLIKLKGEIKSLKKELEKLE-ELKKK----------LAELEKKLDELEEELAELLKE- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 633 agLRQLLLESQSQLDEAKSEAQKQSDELAlvrqQLSDMRSHVEDgdvagspavppAEQDPMKLKTQLERTEATLEAEQTR 712
Cdd:PRK03918 579 --LEELGFESVEELEERLKELEPFYNEYL----ELKDAEKELER-----------EEKELKKLEEELDKAFEELAETEKR 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 713 RQKLTAEFEEAQRTACriQEELEKLRAAgplessgKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDT 792
Cdd:PRK03918 642 LEELRKELEELEKKYS--EEEYEELREE-------YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
570
....*....|...
gi 568918956 793 VKKLQEQLGKAED 805
Cdd:PRK03918 713 LEKLEKALERVEE 725
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
321-727 |
1.03e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 321 AQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAqdtqashaEANQQQTRLK 400
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ--------EEEKLKERLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 401 ELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALA-LAERACEEKLRSLTQAKEESEKQLHLAEAQTKEtlla 479
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNdLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---- 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 480 llpglsISAHQNYAEWLQEFKEKGSEllkkpptlepsmDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVE 559
Cdd:TIGR02169 817 ------IEQKLNRLTLEKEYLEKEIQ------------ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 560 EEErvwkAKVGAAEEELHKSRVTVKHLEDIVEKLKGELEssdQVREHTSHLEAELEkhmaAASAECQNYAKEVaglRQLL 639
Cdd:TIGR02169 879 DLE----SRLGDLKKERDELEAQLRELERKIEELEAQIE---KKRKRLSELKAKLE----ALEEELSEIEDPK---GEDE 944
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 640 LESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAgspavppaeqdpmKLKTQLERTEATLEAEQTRRQKLTAE 719
Cdd:TIGR02169 945 EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVL-------------KRLDELKEKRAKLEEERKAILERIEE 1011
|
....*...
gi 568918956 720 FEEAQRTA 727
Cdd:TIGR02169 1012 YEKKKREV 1019
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
273-790 |
1.19e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 273 ATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS--SEVEVKSKCEELS 350
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElrEELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 351 SLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRlkelESQVSCLEKETSELKEAMEQQKGKNNDL 430
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQ----EELEELLEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 431 REKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSISAHQnyaewlqefkekGSELLKKP 510
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGL------------GGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 511 PTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQksvEEEERVWKAKVGAAEEElhkSRVTVKHLEDIV 590
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELE---EEELEELLAALGLPPDL---SPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 591 EKLKGELESSDQVREH--TSHLEAELEKHMAAASAEcqnyakEVAGLRQLLlesqsqldEAKSEAQKQSDELALVRQQLS 668
Cdd:COG4717 347 EELQELLREAEELEEElqLEELEQEIAALLAEAGVE------DEEELRAAL--------EQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 669 DmrshvedgdVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEaqrtacrIQEELEKLRAAGPLessgk 748
Cdd:COG4717 413 E---------LLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAE-------LEAELEQLEEDGEL----- 471
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 568918956 749 EEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEK 790
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
114-270 |
1.87e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 114 QLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQ-LVAREQEIAAVQARMQASYRDHVKEVQQLQGK 192
Cdd:COG3206 220 QLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQqLRAQLAELEAELAELSARYTPNHPDVIALRAQ 299
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918956 193 IRTLQEQLENGPNTQLARLQQENSILRDALNQATSQveskqnteLAKLRQELSKVNKELVEKSEASRQEEQQRKALEA 270
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQAREASLQAQ--------LAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
238-473 |
2.13e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 238 AKLRQELSKVNKelvekseaSRQEEQQRKALEAkaaTFEKQVLQLQ--ASHKESEEALQKRLEEVTRELCRAQTSHANLR 315
Cdd:PRK11281 39 ADVQAQLDALNK--------QKLLEAEDKLVQQ---DLEQTLALLDkiDRQKEETEQLKQQLAQAPAKLRQAQAELEALK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 316 ADAEKAQEQ----------QQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDT 385
Cdd:PRK11281 108 DDNDEETREtlstlslrqlESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 386 QASHAEANQQQTRLKELESQVSCLEKET---SELKEAMEQQKgknNDLREKNWKAMEALALAERACEEKLRSLTQAK-EE 461
Cdd:PRK11281 188 ALRPSQRVLLQAEQALLNAQNDLQRKSLegnTQLQDLLQKQR---DYLTARIQRLEHQLQLLQEAINSKRLTLSEKTvQE 264
|
250
....*....|..
gi 568918956 462 SEKQLHLAEAQT 473
Cdd:PRK11281 265 AQSQDEAARIQA 276
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
236-475 |
2.64e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.02 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 236 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKqvLQLQASHKEsEEALQKRLEEVTRELCRAQTSHANLR 315
Cdd:COG3096 837 ELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK--LLPQANLLA-DETLADRLEELREELDAAQEAQAFIQ 913
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 316 ADAEKAQ-------------EQQQRVAELHSKLQSSEVEVKSKCEELSSL------------HGQLKEARAENSQLTERI 370
Cdd:COG3096 914 QHGKALAqleplvavlqsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVvqrrphfsyedaVGLLGENSDLNEKLRARL 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 371 RSIE-ALLEAG-QAQDTQASHAEANQQQTRLKelesqvSCLEKETSELKEAMEQQKgknnDLREKNWKAMEALALAERA- 447
Cdd:COG3096 994 EQAEeARREAReQLRQAQAQYSQYNQVLASLK------SSRDAKQQTLQELEQELE----ELGVQADAEAEERARIRRDe 1063
|
250 260
....*....|....*....|....*...
gi 568918956 448 CEEKLRSLTQAKEESEKQLHLAEAQTKE 475
Cdd:COG3096 1064 LHEELSQNRSRRSQLEKQLTRCEAEMDS 1091
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
108-800 |
3.11e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 108 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 187
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 188 QLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKA 267
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 268 LEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRAD-----AEKAQEQQQRVAELHSKLQSSEVEV 342
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEellakKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 343 KSKCEELSSLHGQLKE-ARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESqvscLEKETSELKEAME 421
Cdd:pfam02463 404 EKEAQLLLELARQLEDlLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE----LKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 422 QQKGKNNDLREKNWKAMEALAlAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLS---------------- 485
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQ-KESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKvaistavivevsatad 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 486 --ISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILA---ETEGMLKDLQKSVEE 560
Cdd:pfam02463 559 evEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrakVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 561 EERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLL 640
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 641 ESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEAT----LEAEQTRRQKL 716
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTeklkVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 717 TAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKL 796
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
....
gi 568918956 797 QEQL 800
Cdd:pfam02463 879 LEEQ 882
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
174-480 |
3.11e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.77 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 174 RMQASYRDHV--KEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKEL 251
Cdd:COG5022 798 KLQPLLSLLGsrKEYRSYLACIIKLQKTIKRE-KKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 252 VEKSEASRQEEQQ----RKALEAKAATFEKQVLQLQASHKESE-EALQKRLEEVTRELCraqtshANLRADAEKAQEQQQ 326
Cdd:COG5022 877 VELAERQLQELKIdvksISSLKLVNLELESEIIELKKSLSSDLiENLEFKTELIARLKK------LLNNIDLEEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 327 RVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQ--DTQASHAEANQQQTRLKELES 404
Cdd:COG5022 951 VKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQygALQESTKQLKELPVEVAELQS 1030
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 405 QVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAER----ACEEKLRSLTQAKEESEKQLHLAEAQTKETLLAL 480
Cdd:COG5022 1031 ASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRrensLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVK 1110
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
235-615 |
4.70e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 235 TELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATF----------EKQVLQLQASHKESEEALQKRLEEVTREL 304
Cdd:PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLlaeaglddadAEAVEARREELEDRDEELRDRLEECRVAA 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 305 CRAQTSHANLRADA----EKAQEQQQRVAELHSKLQSSEVEVKSK----------------------------------- 345
Cdd:PRK02224 338 QAHNEEAESLREDAddleERAEELREEAAELESELEEAREAVEDRreeieeleeeieelrerfgdapvdlgnaedfleel 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 346 CEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQ----AQDTQAS-HAEANQQ--------QTRLKELESQVSCLEKE 412
Cdd:PRK02224 418 REERDELREREAELEATLRTARERVEEAEALLEAGKcpecGQPVEGSpHVETIEEdrerveelEAELEDLEEEVEEVEER 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 413 TSELKEAMEQQKGKnNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKqlHLAEAQTKETLLAllpglsiSAHQNY 492
Cdd:PRK02224 498 LERAEDLVEAEDRI-ERLEERREDLEELIAERRETIEEKRERAEELRERAAE--LEAEAEEKREAAA-------EAEEEA 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 493 AEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQyRTILAETEGMLKDLQKSVEEEERVWKAKV-GA 571
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREK-REALAELNDERRERLAEKRERKRELEAEFdEA 646
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 568918956 572 AEEELHKSRVT-VKHLEDIVEKLKGELESSDQVREHTSHLEAELE 615
Cdd:PRK02224 647 RIEEAREDKERaEEYLEQVEEKLDELREERDDLQAEIGAVENELE 691
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
243-804 |
7.09e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 7.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 243 ELSKVNKELVEKSEASRQEEQQRKALEAKAatfekqVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQ 322
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKLQEMQMERDA------MADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 323 EQQQRVA--------ELHSKLQSSEVEVKSKCEE---LSSLHGQ---------LKEARAENSQLTERIRSIEALLEAGQA 382
Cdd:pfam15921 173 EQLRKMMlshegvlqEIRSILVDFEEASGKKIYEhdsMSTMHFRslgsaiskiLRELDTEISYLKGRIFPVEDQLEALKS 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 383 QDTQASHAEANQQQTRLKELesqVSCLEKETSELKEAMEQQKGKNNDL-----------REKNWKAMEALALAERACEEK 451
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIqsqleiiqeqaRNQNSMYMRQLSDLESTVSQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 452 LRSLTQAK-------EESEKQLHLAEAQTKE-------------TLLALLPGLSISAHQNYAEWLQEfKEKGSELLKKPP 511
Cdd:pfam15921 330 RSELREAKrmyedkiEELEKQLVLANSELTEarterdqfsqesgNLDDQLQKLLADLHKREKELSLE-KEQNKRLWDRDT 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 512 TLEPSMDIV--------LKLREAEETQNSLQAECD-QYRTILAETEGMLKDLQK--SVEEEERVWKAKVGAAEEELHKSR 580
Cdd:pfam15921 409 GNSITIDHLrrelddrnMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKvsSLTAQLESTKEMLRKVVEELTAKK 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 581 VTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLllesQSQLDEAKSEAQKQSDEL 660
Cdd:pfam15921 489 MTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV----QTECEALKLQMAEKDKVI 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 661 ALVRQQLSDMRSHV-EDGDVAGSPAVPPAEqdpmkLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRA 739
Cdd:pfam15921 565 EILRQQIENMTQLVgQHGRTAGAMQVEKAQ-----LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN 639
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568918956 740 AGPLESSGKEEITQLKERLEKE-KRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAE 804
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEvKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
287-804 |
9.87e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 9.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 287 KESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQL 366
Cdd:PRK03918 199 EKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 367 TERIRSIEAL---------LEAGQAQDTQASH----------AEANQQQTRLKELESqvscLEKETSELKEAMEQQKGKN 427
Cdd:PRK03918 279 EEKVKELKELkekaeeyikLSEFYEEYLDELReiekrlsrleEEINGIEERIKELEE----KEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 428 NDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALlpgLSISAHQNYAEWLQEFKEKGSELL 507
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI---SKITARIGELKKEIKELKKAIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 508 KKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEErvwkaKVGAAEEELHKSRVTVKHLE 587
Cdd:PRK03918 432 KKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE-----KVLKKESELIKLKELAEQLK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 588 DIVEKLKG-ELESSDQVREHTSHLEAELEKhmaaASAECQNYAKEVAGLRQLllesQSQLDEAKSEAQKQSDELALVRQQ 666
Cdd:PRK03918 507 ELEEKLKKyNLEELEKKAEEYEKLKEKLIK----LKGEIKSLKKELEKLEEL----KKKLAELEKKLDELEEELAELLKE 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 667 LSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESS 746
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 747 GK-EEITQLKERLEKE-KRLTSDLGRAAIKLQELLKTTqEQLTKEKDTVKKLQEQLGKAE 804
Cdd:PRK03918 659 EEyEELREEYLELSRElAGLRAELEELEKRREEIKKTL-EKLKEELEEREKAKKELEKLE 717
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
142-802 |
1.53e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 142 EMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQQLQGKIRTLQEQLENGPN--TQLARLQQENSILR 219
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAylTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 220 DALNQATSQVESKQNTE--LAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRL 297
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEavLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 298 EEVTRELCRAQTSHANLRADaekAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALL 377
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRD---AHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 378 EAGQAQDTQASHAEAnQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKL----R 453
Cdd:TIGR00618 417 SAFRDLQGQLAHAKK-QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAvvlaR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 454 SLTQAKEESEKQLHLAEAQTKETLLALLPGLS------ISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMdivlklREAE 527
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTrrmqrgEQTYAQLETSEEDVYHQLTSERKQRASLKEQM------QEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 528 ETQNSLQAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVkHLEDIVEKLKGELESSDQVREHT 607
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ-DLQDVRLHLQQCSQELALKLTAL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 608 SHLEAELEKHMAAASAECQNYAKEvaglrQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRShVEDGDVAGSPAVPP 687
Cdd:TIGR00618 649 HALQLTLTQERVREHALSIRVLPK-----ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRE-LETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 688 AEQDPMKLKTQLERTEATL-----EAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEKEK 762
Cdd:TIGR00618 723 IENASSSLGSDLAAREDALnqslkELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 568918956 763 RLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGK 802
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSA 842
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-808 |
1.68e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 265 RKALEAKAATFEKQVLQLQASHKESEEALQKR--LEEvtrelcraqtshanLRADAEKAQEQQQRVAELHSKLQSSEVEV 342
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIelLEP--------------IRELAERYAAARERLAELEYLRAALRLWF 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 343 KSKCEELssLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSELKEAMEQ 422
Cdd:COG4913 286 AQRRLEL--LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 423 QKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQ------TKETLLALLPGLSiSAHQNYAEWL 496
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAlrdlrrELRELEAEIASLE-RRKSNIPARL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 497 QEFKEKGSELLKKPPTlepSMDIV---LKLREAEET-QNSLQAECDQYRTILAETEGMLKDLQKSVEE---EERVWKAKV 569
Cdd:COG4913 443 LALRDALAEALGLDEA---ELPFVgelIEVRPEEERwRGAIERVLGGFALTLLVPPEHYAAALRWVNRlhlRGRLVYERV 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 570 GAAEEELHKSRVTVKHLediVEKLK-------GELEssDQVREHTSHL----EAELEKHMAAASAECQNYAKEVAG---- 634
Cdd:COG4913 520 RTGLPDPERPRLDPDSL---AGKLDfkphpfrAWLE--AELGRRFDYVcvdsPEELRRHPRAITRAGQVKGNGTRHekdd 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 635 ----LRQLLL--ESQSQLDEAKSEAQKQSDELALVRQQLSdmrshvedgdvagspavppaeqdpmKLKTQLERTEATLEA 708
Cdd:COG4913 595 rrriRSRYVLgfDNRAKLAALEAELAELEEELAEAEERLE-------------------------ALEAELDALQERREA 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 709 EQTRRQKLTAE--FEEAQRTACRIQEELEKLRAAGPlessgkeEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQL 786
Cdd:COG4913 650 LQRLAEYSWDEidVASAEREIAELEAELERLDASSD-------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKEL 722
|
570 580
....*....|....*....|..
gi 568918956 787 TKEKDTVKKLQEQLGKAEDGSS 808
Cdd:COG4913 723 EQAEEELDELQDRLEAAEDLAR 744
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
283-763 |
2.17e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 283 QASHKESEEALQKRLEEVTRELCRAQtshanlradaekaqeqqqrvaelhsklqssevevkskcEELSSLHGQLKEARAE 362
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQ--------------------------------------SELRRIENRLDELSQE 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 363 NSQLTERIRSIEALLEAGQaqdtqashAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALA 442
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLE--------QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 443 -LAERACEEKLRSLTQAKEESEKQLHLAEAQTKEtllallpglsISAHQNYAEWLQEFKEKGSEllkkpptlepsmDIVL 521
Cdd:TIGR02169 783 dLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE----------IEQKLNRLTLEKEYLEKEIQ------------ELQE 840
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 522 KLREAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEeervwkakvgaaeeelhksrvtvkhLEDIVEKLKGELEssd 601
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD-------------------------LESRLGDLKKERD--- 892
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 602 qvrehtshleaELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAqkqsdelalvrqqlsdmrSHVEDGDVAG 681
Cdd:TIGR02169 893 -----------ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL------------------SEIEDPKGED 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 682 SPaVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAgplessgKEEITQLKERLEKE 761
Cdd:TIGR02169 944 EE-IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE-------RKAILERIEEYEKK 1015
|
..
gi 568918956 762 KR 763
Cdd:TIGR02169 1016 KR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
409-770 |
2.22e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 409 LEKETSELKEAMEQQKGKNNDLREKNwKAMEALAlAERACEEKLRSLTQAKEESEKQLHLAEAQTKETllallpglSISA 488
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKR-QQLERLR-REREKAERYQALLKEKREYEGYELLKEKEALER--------QKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 489 HQNYAEWLQEFKEKGSELLKKppTLEPSMDIVLKLREAEETQNSL-QAECDQYRTILAETEGMLKDLQKSVEEEERvwka 567
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISE--LEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKER---- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 568 KVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLD 647
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 648 EAKSE-------AQKQSDELALVRQQLSDMRSHVED--GDVAGSPAVPPAEQDPMKLKTQ-LERTEATLEAEQTRRQKLT 717
Cdd:TIGR02169 396 KLKREinelkreLDRLQEELQRLSEELADLNAAIAGieAKINELEEEKEDKALEIKKQEWkLEQLAADLSKYEQELYDLK 475
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568918956 718 AEFEEAQRTACRIQEELEKL----RAAGPLESSGKEEITQLKERLEKEKRLTSDLGR 770
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAeaqaRASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
108-479 |
2.50e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.81 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 108 VAILKRQLEEKEKLLATEQEDAavaksklrelnKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQAR---MQASYRDHVK 184
Cdd:pfam10174 347 VDALRLRLEEKESFLNKKTKQL-----------QDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKienLQEQLRDKDK 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 185 EVQQLQGKIRTLQEQLENgPNTQLARLQQ---ENSILRDALNQATSQVESKQNTELAKLRQElskvNKELVEKSEASRQE 261
Cdd:pfam10174 416 QLAGLKERVKSLQTDSSN-TDTALTTLEEalsEKERIIERLKEQREREDRERLEELESLKKE----NKDLKEKVSALQPE 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 262 EQQRKA----LEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHanlradaeKAQEQQQRVAELHSKLQS 337
Cdd:pfam10174 491 LTEKESslidLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAH--------NAEEAVRTNPEINDRIRL 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 338 SEVEVKSKCEE-------LSSLHGQLKEARAENSQLTERIRSIEAL-LEAGQAQDTQASHAEANQQQTRLKELESQVSCL 409
Cdd:pfam10174 563 LEQEVARYKEEsgkaqaeVERLLGILREVENEKNDKDKKIAELESLtLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEAR 642
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568918956 410 EKETSELKEAMEQQKGKNNDLREKNWKAMEA----LALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLA 479
Cdd:pfam10174 643 RREDNLADNSQQLQLEELMGALEKTRQELDAtkarLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLA 716
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
241-476 |
2.59e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 44.30 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 241 RQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESeealQKRLEEVTRELCRAQTSHANLradaEK 320
Cdd:PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRET----QNTLNQLNKQIDELNASIAKL----EQ 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 321 AQEQQQRV--AEL--------HSKLQ---SSEVEVKSkcEELSSLHGQLKEARAEN----SQLTERIRSIEALLEAGQAQ 383
Cdd:PRK11637 118 QQAAQERLlaAQLdaafrqgeHTGLQlilSGEESQRG--ERILAYFGYLNQARQETiaelKQTREELAAQKAELEEKQSQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 384 DTQASHAEANQQQTrlkeLESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERacEEKLRSLTQAKEESE 463
Cdd:PRK11637 196 QKTLLYEQQAQQQK----LEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER--EAKARAEREAREAAR 269
|
250
....*....|...
gi 568918956 464 KQLHLAEAQTKET 476
Cdd:PRK11637 270 VRDKQKQAKRKGS 282
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
262-432 |
2.71e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 262 EQQRKALEAKAATFEKQVLQLQASHK-----ESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQ 336
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 337 SSEVevkskceeLSSLHGQLKEARAENSQLTER-------IRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCL 409
Cdd:COG3206 261 QSPV--------IQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASL 332
|
170 180
....*....|....*....|...
gi 568918956 410 EKETSELKEAMEQQKGKNNDLRE 432
Cdd:COG3206 333 QAQLAQLEARLAELPELEAELRR 355
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
98-422 |
2.81e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 98 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQA 177
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 178 SYRDHVKEVQQLQGKIRTLQEQLENGPNTQlaRLQQENSILRDA-------LNQATSQVESKQNTELAKLRQELSKVNKE 250
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEE--RLKEARLLLLIAaallallGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 251 LVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKR----LEEVTRELCRAQTSHANLRADAEKAQEQQQ 326
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelleLLDRIEELQELLREAEELEEELQLEELEQE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 327 RVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGqaqDTQASHAEANQQQTRLKELESQV 406
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEAL---DEEELEEELEELEEELEELEEEL 448
|
330
....*....|....*.
gi 568918956 407 SCLEKETSELKEAMEQ 422
Cdd:COG4717 449 EELREELAELEAELEQ 464
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
111-615 |
2.82e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 111 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQE----IAAVQARMQASYRDHVKEV 186
Cdd:pfam12128 331 HGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQnnrdIAGIKDKLAKIREARDRQL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 187 QQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRK 266
Cdd:pfam12128 411 AVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERL 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 267 ALEAKAA--TFEKQVLQLQASHKESEEaLQKRLEEVTRELC-RAQTSHANLRADAEKAQEQQQRV---AELHSKLQSSEV 340
Cdd:pfam12128 491 QSELRQArkRRDQASEALRQASRRLEE-RQSALDELELQLFpQAGTLLHFLRKEAPDWEQSIGKVispELLHRTDLDPEV 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 341 EVKSKCEELS--SLHGQLKEARAENS-QLTERIRSIEALLEAGqAQDTQASHAEANQQQTRL-KELESQVSCLEKETSEL 416
Cdd:pfam12128 570 WDGSVGGELNlyGVKLDLKRIDVPEWaASEEELRERLDKAEEA-LQSAREKQAAAEEQLVQAnGELEKASREETFARTAL 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 417 KEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETL------------------- 477
Cdd:pfam12128 649 KNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKreartekqaywqvvegald 728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 478 --LALLPGLSISAHQNYAEWLQEFKEKGSELLKKpptLEPSMDIVLKLREAEET----------------------QNSL 533
Cdd:pfam12128 729 aqLALLKAAIAARRSGAKAELKALETWYKRDLAS---LGVDPDVIAKLKREIRTlerkieriavrrqevlryfdwyQETW 805
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 534 QAECDQYRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLEAE 613
Cdd:pfam12128 806 LQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQ 885
|
..
gi 568918956 614 LE 615
Cdd:pfam12128 886 GS 887
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
255-475 |
2.98e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 255 SEASRQEEQQRKALEAKAATFEKQVLQLQAShkesEEALQKRLEEVTRELCRAQtshanlradaEKAQEQQQRVAELHSK 334
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALERRIAALA----------RRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 335 LQSSEVEVKSKCEELSSLHGQLKEaRAENSQLTERIRSIEALLEAGQAQD-----------TQASHAEANQQQTRLKELE 403
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAE-LLRALYRLGRQPPLALLLSPEDFLDavrrlqylkylAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568918956 404 SQVSCLEKETSELKEAMEQQKGKNNDL---REKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKE 475
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALealKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
108-658 |
3.21e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 108 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 187
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 188 QLQGKIRTLQEQLE-----------------NGPNTQLARLQQENSILRDALNQATSQVESKQNTEL-----AKLRQELS 245
Cdd:TIGR00618 376 TLTQHIHTLQQQKTtltqklqslckeldilqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELcaaaiTCTAQCEK 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 246 KVNKELVEKSEASRQEEQQRKALEAKAATfEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQ 325
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQ-ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 326 QRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASH---AEANQQQTRLKEL 402
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDlteKLSEAEDMLACEQ 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 403 ESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEaqtketllallp 482
Cdd:TIGR00618 615 HALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAL------------ 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 483 glsiSAHQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLR-EAEETQNSLQAECDQYRTILAETEGMLKDLQKSVEEE 561
Cdd:TIGR00618 683 ----QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFnEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKA 758
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 562 ERVWKAKVGAAEEELHKSRVTVKHLE-DIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLL 640
Cdd:TIGR00618 759 RTEAHFNNNEEVTAALQTGAELSHLAaEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
570
....*....|....*...
gi 568918956 641 ESQSQLDEAKSEAQKQSD 658
Cdd:TIGR00618 839 EKSATLGEITHQLLKYEE 856
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
184-475 |
4.29e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 184 KEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQEEQ 263
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQN-NKIISQLNEQISQLKKELTNSESENSEKQR-ELEEKQNEIEKLKKENQSYKQEIKNLES 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 264 QRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTR-------------ELCRAQTSHANLRADAEKAQEQQQR--- 327
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERlketiiknnseikDLTNQDSVKELIIKNLDNTRESLETqlk 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 328 -----VAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEalleagqaQDTQASHAEANQQQTRLKEL 402
Cdd:TIGR04523 472 vlsrsINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLK--------EKIEKLESEKKEKESKISDL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 403 ESQV---------SCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAE---RACEEKLRSLTQAKEESEKQLHLAE 470
Cdd:TIGR04523 544 EDELnkddfelkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEkekKDLIKEIEEKEKKISSLEKELEKAK 623
|
....*
gi 568918956 471 AQTKE 475
Cdd:TIGR04523 624 KENEK 628
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
291-563 |
5.22e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 291 EALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVE-VKSKCEELSSLHGQLKEARAENSQLTER 369
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADEtLADRLEELREELDAAQEAQAFIQQHGKA 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 370 IRSIEALLEAGQA--QDTQASHAEANQQQTRLKELESQVSCLEkETSELKEAM-----EQQKGKNNDLREKnwkameala 442
Cdd:COG3096 919 LAQLEPLVAVLQSdpEQFEQLQADYLQAKEQQRRLKQQIFALS-EVVQRRPHFsyedaVGLLGENSDLNEK--------- 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 443 laeraCEEKLRSLTQAKEESEKQLHLAEAQTKETlLALLPGLSiSAHQNYAEWLQEFKEKGSEL-LKKPPTLEPSMDIVL 521
Cdd:COG3096 989 -----LRARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLK-SSRDAKQQTLQELEQELEELgVQADAEAEERARIRR 1061
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568918956 522 KLREAEETQNslQAECDQYRTILAETEGMLKDLQKSVEEEER 563
Cdd:COG3096 1062 DELHEELSQN--RSRRSQLEKQLTRCEAEMDSLQKRLRKAER 1101
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
586-804 |
7.69e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 7.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 586 LEDIVEKLKGELES----SDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELA 661
Cdd:COG1196 191 LEDILGELERQLEPlerqAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 662 LVRQQLSDMRSHVEDgdvagspavppAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKL---- 737
Cdd:COG1196 271 ELRLELEELELELEE-----------AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeel 339
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568918956 738 -RAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKAE 804
Cdd:COG1196 340 eELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
593-800 |
9.19e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 9.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 593 LKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQ--------SDELALVR 664
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLE 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 665 QQLSDMRSHVEDGDvagsPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRT----ACRIQEELEKLRAA 740
Cdd:TIGR02169 308 RSIAEKERELEDAE----ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEledlRAELEEVDKEFAET 383
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 741 GPLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQL 800
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
185-698 |
1.03e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 185 EVQQLQGKIRTLQEQLENGPNT---QLARLQQENSILRDALNQATSQVESKqnteLAKLRQELSKVNKELVEK------- 254
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMymrQLSDLESTVSQLRSELREAKRMYEDK----IEELEKQLVLANSELTEArterdqf 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 255 SEASRQEEQQRKALEAKAATFEKQVLQLQASHKE----------SEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQ 324
Cdd:pfam15921 369 SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMER 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 325 Q-----------QRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQ-ASHAEA 392
Cdd:pfam15921 449 QmaaiqgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlRSRVDL 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 393 NQQQTR-LKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQ-AKEESEKQLHLAE 470
Cdd:pfam15921 529 KLQELQhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQlEKEINDRRLELQE 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 471 AQT-KETLLALLPGLSISAHQNYAEWLQeFKEKGSELLKKPPTLEPSMDIVLKlrEAEETQNSLQAECDQYRTIlaetEG 549
Cdd:pfam15921 609 FKIlKDKKDAKIRELEARVSDLELEKVK-LVNAGSERLRAVKDIKQERDQLLN--EVKTSRNELNSLSEDYEVL----KR 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 550 MLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDI-VEKLKGELESSDQVREHTSHLEAeLEKHMAAASAECQNY 628
Cdd:pfam15921 682 NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdGHAMKVAMGMQKQITAKRGQIDA-LQSKIQFLEEAMTNA 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 629 AKEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVEDGDVAGSPA----------VPPAEQDPMKLKTQ 698
Cdd:pfam15921 761 NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKAslqfaecqdiIQRQEQESVRLKLQ 840
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
111-475 |
1.10e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 111 LKRQLEEKEKLLATEQEDAAVAKSKLRELnkEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQAsYRDHVKEVQQLQ 190
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEALEAELAELPERLEELEERLEE-LRELEEELEELE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 191 GKIRTLQEQLENGPNT-------QLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQEEQ 263
Cdd:COG4717 170 AELAELQEELEELLEQlslateeELQDLAEELEELQQRLAELEEELEEAQE-ELEELEEELEQLENELEAAALEERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 264 QRK--------ALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKL 335
Cdd:COG4717 249 RLLlliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 336 QSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIR------SIEALLEAGQAQDTQA------SHAEANQQQTRLKELE 403
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqEIAALLAEAGVEDEEElraaleQAEEYQELKEELEELE 408
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918956 404 SQvscLEKETSELKEAMEQQKGKNNDLR-EKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKE 475
Cdd:COG4717 409 EQ---LEELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQEL 478
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
277-805 |
1.13e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 277 KQVLQLqashkESEEALQKRLEEVTRELCRaqtSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQL 356
Cdd:PRK03918 152 RQILGL-----DDYENAYKNLGEVIKEIKR---RIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 357 KEARAENSQLTERIRSIEALLEagqaqdtqashaEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWK 436
Cdd:PRK03918 224 EKLEKEVKELEELKEEIEELEK------------ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 437 AMEALALaeracEEKLRSLTQAKEESEKQLHLAEAQTKETLLallpglSISAHQNYAEWLQEFKEKGSELLKKPPTLEPS 516
Cdd:PRK03918 292 AEEYIKL-----SEFYEEYLDELREIEKRLSRLEEEINGIEE------RIKELEEKEERLEELKKKLKELEKRLEELEER 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 517 MDIVLKLREAEETQNSLQAECDQYRtiLAETEGMLKDLQKS---VEEEERVWKAKVGAAEEElhksrvtVKHLEDIVEKL 593
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAkeeIEEEISKITARIGELKKE-------IKELKKAIEEL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 594 KG-ELESSDQVREHTSHLEAELekhMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSdELALVRQQLSDMRS 672
Cdd:PRK03918 432 KKaKGKCPVCGRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES-ELIKLKELAEQLKE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 673 HVEDGDVAGSPAVPPAEQDPMKLKTQLERTEA---TLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRaaGPLESSGKE 749
Cdd:PRK03918 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGeikSLKKELEKLEELKKKLAELEKKLDELEEELAELL--KELEELGFE 585
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 568918956 750 EITQLKERLEKEKRLTSDLGRaaiklqelLKTTQEQLTKEKDTVKKLQEQLGKAED 805
Cdd:PRK03918 586 SVEELEERLKELEPFYNEYLE--------LKDAEKELEREEKELKKLEEELDKAFE 633
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
207-475 |
1.48e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 207 QLARLQQENSILRDALNQATSQV--ESKQNTELAKLRQELSKVNKELVE---KSEASRQE-EQQRKALEAKAATFEKQVL 280
Cdd:pfam01576 146 QNSKLSKERKLLEERISEFTSNLaeEEEKAKSLSKLKNKHEAMISDLEErlkKEEKGRQElEKAKRKLEGESTDLQEQIA 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 281 QLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQS-------SEVEVKSKCEELSSLH 353
Cdd:pfam01576 226 ELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraarnkAEKQRRDLGEELEALK 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 354 GQLKEA-RAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESqvsclekeTSELKEAMEQQKgKNNDLRE 432
Cdd:pfam01576 306 TELEDTlDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQA--------LEELTEQLEQAK-RNKANLE 376
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568918956 433 KNWKAMEAlALAERACEekLRSLTQAKEESEKQLHLAEAQTKE 475
Cdd:pfam01576 377 KAKQALES-ENAELQAE--LRTLQQAKQDSEHKRKKLEGQLQE 416
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
188-416 |
2.44e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 188 QLQGKIRTLQE--QLENGPNTQLARLQQENSILRDALNQATSQVESK---QNTELAKLRQELSKVNKELVEKSEASRQEE 262
Cdd:pfam07888 35 RLEECLQERAEllQAQEAANRQREKEKERYKRDREQWERQRRELESRvaeLKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 263 QQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRadaekaqEQQQRVAELHSKLQSSEVEV 342
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRK-------EEEAERKQLQAKLQQTEEEL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568918956 343 KSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQ--ASHAEANQQQTRLKELESQVSCLEKETSEL 416
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEneALLEELRSLQERLNASERKVEGLGEELSSM 263
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
231-800 |
2.47e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 231 SKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTS 310
Cdd:TIGR00618 162 SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQS 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 311 HANLRADAEKAQEQQQRVAELHsklqssevEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQA-QDTQASH 389
Cdd:TIGR00618 242 HAYLTQKREAQEEQLKKQQLLK--------QLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIeQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 390 AEANQQQTRLKELESQVSCLEKETSELKEA---MEQQKGKNNDLREKNWKAMEALALAERACE--EKLRSLTQAKEESEK 464
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQrrlLQTLHSQEIHIRDAHEVATSIREISCQQHTltQHIHTLQQQKTTLTQ 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 465 QLHLA---------EAQTKETLLALLPGL---------SISAHQNYAEWLQEFKEKGSELLKKPPTLEPSMdiVLKLREA 526
Cdd:TIGR00618 394 KLQSLckeldilqrEQATIDTRTSAFRDLqgqlahakkQQELQQRYAELCAAAITCTAQCEKLEKIHLQES--AQSLKER 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 527 EETQNSLQAECDQYRTILAETEGMLKDLQK---------SVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGEL 597
Cdd:TIGR00618 472 EQQLQTKEQIHLQETRKKAVVLARLLELQEepcplcgscIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 598 ESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLE----SQSQLDEAKSEAQKQSDELALVRQQLSDMRSH 673
Cdd:TIGR00618 552 TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRlqdlTEKLSEAEDMLACEQHALLRKLQPEQDLQDVR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 674 VEDGDVagspavppaEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRiQEELEKLRAAGPLESSGKEEITQ 753
Cdd:TIGR00618 632 LHLQQC---------SQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR-QLALQKMQSEKEQLTYWKEMLAQ 701
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 568918956 754 LKERLEKEKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQL 800
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL 748
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
108-798 |
2.51e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 108 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEmASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQ 187
Cdd:pfam02463 347 LEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKL-ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEK 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 188 QLQGKIRTLQEQLENGPNTQLArLQQENSILRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKA 267
Cdd:pfam02463 426 KEELEILEEEEESIELKQGKLT-EEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 268 LEAKAATFEKQVLQLQASHKESEEALQKRLEEVTrELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCE 347
Cdd:pfam02463 505 ARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV-ENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLL 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 348 ELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTRLKELESQVSCL----EKETSELKEAMEQQ 423
Cdd:pfam02463 584 IPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKEsglrKGVSLEEGLAEKSE 663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 424 KGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPGLSI--SAHQNYAEWLQEFKE 501
Cdd:pfam02463 664 VKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRvqEAQDKINEELKLLKQ 743
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 502 KGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAETEGMLKDLqKSVEEEERVWKAKVGAAEEELHKSRV 581
Cdd:pfam02463 744 KIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL-KAQEEELRALEEELKEEAELLEEEQL 822
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 582 TVKHLEDIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDELA 661
Cdd:pfam02463 823 LIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKEL 902
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 662 LVRQQLSDMrshvedgdvagspavPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAG 741
Cdd:pfam02463 903 EEESQKLNL---------------LEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL 967
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 568918956 742 PLESSGKEEITQLKERLEKEKRLTSDLGRAAIKLQEllKTTQEQLTKEKDTVKKLQE 798
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEE--KKKLIRAIIEETCQRLKEF 1022
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
409-804 |
3.03e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 409 LEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLpglSISA 488
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE---KLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 489 HQNYAEWLQEFKEKGSELLKKPPTLEPSMDIVLKLREAEETQNSLQAECDQYRTILAE-----TEGMLKDLQKSVEEEER 563
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEElleqlSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 564 vWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREHTSHLE--------AELEKHMAAASAECQNYAKEVAGL 635
Cdd:COG4717 204 -LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLllliaaalLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 636 RQLLLESQSQLDEAKSEAQKQSDEL-ALVRQQLSDMRSHVEDGDVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQ 714
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELqALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 715 KLTAEFEEAQRTACRIQ-----EELEKLRAAGPLESSGKEEITQLKERLEKEKRLTSDLGRAAIK--LQELLKTTQEQLT 787
Cdd:COG4717 363 LQLEELEQEIAALLAEAgvedeEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEeeLEEELEELEEELE 442
|
410
....*....|....*..
gi 568918956 788 KEKDTVKKLQEQLGKAE 804
Cdd:COG4717 443 ELEEELEELREELAELE 459
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
99-432 |
3.41e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 99 HKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMASEKAKAAAGEAKVKKQLVAREQEIAAVQARMQAS 178
Cdd:PRK03918 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 179 YRDHVKEVQQLQGKIRTLQEQLENgpntqlaRLQQENSILrdaLNQATSQVESKQNTELAKLRQELSKVNKElveksEAS 258
Cdd:PRK03918 457 YTAELKRIEKELKEIEEKERKLRK-------ELRELEKVL---KKESELIKLKELAEQLKELEEKLKKYNLE-----ELE 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 259 RQEEQQRKaLEAKAATFEKQVLQLqASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEK-----AQEQQQRVAELHS 333
Cdd:PRK03918 522 KKAEEYEK-LKEKLIKLKGEIKSL-KKELEKLEELKKKLAELEKKLDELEEELAELLKELEElgfesVEELEERLKELEP 599
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 334 ------KLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQqqtRLKELESQVS 407
Cdd:PRK03918 600 fyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE---EYLELSRELA 676
|
330 340
....*....|....*....|....*
gi 568918956 408 CLEKETSELKEAMEQQKGKNNDLRE 432
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKE 701
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
236-563 |
3.82e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 236 ELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQlqaSHKESEEALQKRLEEVTRELCRAQtshanlr 315
Cdd:PRK04863 838 ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPR---LNLLADETLADRVEEIREQLDEAE------- 907
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 316 aDAEKAQEQQQRVAELHSKLQSSeveVKSKCEELSSLHGQLKEARAENSQLTERIRSIealleagqaqdtqashAEANQQ 395
Cdd:PRK04863 908 -EAKRFVQQHGNALAQLEPIVSV---LQSDPEQFEQLKQDYQQAQQTQRDAKQQAFAL----------------TEVVQR 967
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 396 QTRLKELESQVscLEKETSELKEAMEQQkgknndlreknwkameaLALAERACEEKLRSLTQAKEESekqlhlaeAQTKE 475
Cdd:PRK04863 968 RAHFSYEDAAE--MLAKNSDLNEKLRQR-----------------LEQAEQERTRAREQLRQAQAQL--------AQYNQ 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 476 TLLALlpglsISAHQNYAEWLQEFKEkgsELLKKPPTLEPSMDIVLKLREaEETQNSL---QAECDQYRTILAETEGMLK 552
Cdd:PRK04863 1021 VLASL-----KSSYDAKRQMLQELKQ---ELQDLGVPADSGAEERARARR-DELHARLsanRSRRNQLEKQLTFCEAEMD 1091
|
330
....*....|.
gi 568918956 553 DLQKSVEEEER 563
Cdd:PRK04863 1092 NLTKKLRKLER 1102
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
227-316 |
3.85e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.09 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 227 SQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHkeseEALQKRLEEVTRELcR 306
Cdd:PRK11448 141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQL----EQLQEKAAETSQER-K 215
|
90
....*....|
gi 568918956 307 AQTSHANLRA 316
Cdd:PRK11448 216 QKRKEITDQA 225
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
291-476 |
4.02e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 291 EALQKRLEEVTRELCRAQTSHANLRADAEKAQEQ----QQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQL 366
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEynelQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 367 TERIRSIEALLEAGQAQD-----------TQASHAEANQQQTRLKELESQVSCLEKETSEL---KEAMEQQKGKNNDLRE 432
Cdd:COG3883 99 GGSVSYLDVLLGSESFSDfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELealKAELEAAKAELEAQQA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568918956 433 KNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKET 476
Cdd:COG3883 179 EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
238-371 |
5.07e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 238 AKLRQELSKVNKELVEKSEASRQEEQQRKALEakaatfekqvlqlqashKESEEALQKRLEEVTRELcraqtshANLRAD 317
Cdd:COG0542 400 ARVRMEIDSKPEELDELERRLEQLEIEKEALK-----------------KEQDEASFERLAELRDEL-------AELEEE 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568918956 318 AEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIR 371
Cdd:COG0542 456 LEALKARWEAEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLR 509
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
582-798 |
5.57e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 582 TVKHLEDIVEKLKGELESSDQVrehtshLEAELEKH-MAAASAECQNYAKEVAGLRQLLLESQSQLDEAKSEAQKQSDEL 660
Cdd:COG3206 176 ALEFLEEQLPELRKELEEAEAA------LEEFRQKNgLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 661 ALVRQQLSdmrshvedgDVAGSPAVPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRtacRIQEELEKLRAA 740
Cdd:COG3206 250 GSGPDALP---------ELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA---QLQQEAQRILAS 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568918956 741 GPLESSG-KEEITQLKERLEKEKRLTSDLGRAAIKLQEL---LKTTQEQLTkekDTVKKLQE 798
Cdd:COG3206 318 LEAELEAlQAREASLQAQLAQLEARLAELPELEAELRRLereVEVARELYE---SLLQRLEE 376
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
293-759 |
5.92e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.11 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 293 LQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKlQSSEVEVKskceeLSSLHGQLKEARAENSQLTERIRS 372
Cdd:pfam05557 7 SKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESD-RNQELQKR-----IRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 373 IEALLEAgqaqdtqaSHAEANQQQTRLKELESQVSCLEKETSELKEAMEQQKGKNNDLREKNWKAMEALALAERACEEkL 452
Cdd:pfam05557 81 KKKYLEA--------LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASE-A 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 453 RSLTQAKEESEKQLHLAEAQTKETLLALlpglsisahQNYAEWLQEFKEKGSELLKKP---PTLEPSMDIVLKLREAEET 529
Cdd:pfam05557 152 EQLRQNLEKQQSSLAEAEQRIKELEFEI---------QSQEQDSEIVKNSKSELARIPeleKELERLREHNKHLNENIEN 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 530 QNSLQAECDQYRTILAETEGM---LKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHLEDIVEKLKGELESSDQVREH 606
Cdd:pfam05557 223 KLLLKEEVEDLKRKLEREEKYreeAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSL 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 607 TSHLeaeleKHMAAASAECQNyakEVAGLRQLLLESQSQLDEAKSEAQKQSDELALVRQQLSDMRSHVE--DGDVAGSPA 684
Cdd:pfam05557 303 TSSA-----RQLEKARRELEQ---ELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILEsyDKELTMSNY 374
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568918956 685 VPPAEQDPMKLKTQLERTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLE--SSGKEEITQLKERLE 759
Cdd:pfam05557 375 SPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLAdpSYSKEEVDSLRRKLE 451
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
231-433 |
6.30e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 231 SKQNTELAKLRQELSKVNKELVEKSEASRQEEQQRKALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTR---ELCRA 307
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknKLLKL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 308 QTSHANLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQA 387
Cdd:TIGR04523 200 ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN 279
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568918956 388 ShAEANQQQTRLKELESQVSCLEKE-----TSELKEAMEQQKGKNNDLREK 433
Cdd:TIGR04523 280 N-KKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQ 329
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
165-425 |
7.46e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 7.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 165 EQEIAAVQARMQASYR---DHVKEVQQLQGKIRTLQEQLengpnTQLARLQQENSIL---------------RDALNQAT 226
Cdd:PRK04863 836 EAELRQLNRRRVELERalaDHESQEQQQRSQLEQAKEGL-----SALNRLLPRLNLLadetladrveeireqLDEAEEAK 910
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 227 SQVESKQNTeLAKLRQELSKVN---------KELVEKSEASRQEEQQR----KALEAKAATFE-KQVLQLQASHKESEEA 292
Cdd:PRK04863 911 RFVQQHGNA-LAQLEPIVSVLQsdpeqfeqlKQDYQQAQQTQRDAKQQafalTEVVQRRAHFSyEDAAEMLAKNSDLNEK 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 293 LQKRLEEVTRELCRAQTShanLRADAEKAQEQQQRVAELHSKLQSSEVEVKSKCEELSSL-----HGQLKEARAENSQLT 367
Cdd:PRK04863 990 LRQRLEQAEQERTRAREQ---LRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLgvpadSGAEERARARRDELH 1066
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 368 ERIRsiealleagqAQDTQASHAEANQ--QQTRLKELESQVSCLEKETSELKEAMEQQKG 425
Cdd:PRK04863 1067 ARLS----------ANRSRRNQLEKQLtfCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
184-398 |
7.84e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 184 KEVQQLQGKIRTLQEQLENgPNTQLARLQQENSILRDALNQATSQVESKQNtELAKLRQELSKVNKELVEKSEASRQEEQ 263
Cdd:COG3883 23 KELSELQAELEAAQAELDA-LQAELEELNEEYNELQAELEALQAEIDKLQA-EIAEAEAEIEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 264 QRKALEA------------------KAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQ 325
Cdd:COG3883 101 SVSYLDVllgsesfsdfldrlsalsKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918956 326 QRVAelhSKLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQDTQASHAEANQQQTR 398
Cdd:COG3883 181 EALL---AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAG 250
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
114-338 |
8.41e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 114 QLEEKEKLLATEQEDAAVAKSKLRELNKEMASekakAAAGEAKVKKQLVAREQEIAAVQARMQASYRDHVKEVQQLQGKI 193
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEE----LNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 194 RTLQEQleNGPNTQLARLQQENSI--------LRDALNQATSQVESKQNTELAKLRQELSKVNKELVEKSEASRQEEQQR 265
Cdd:COG3883 93 RALYRS--GGSVSYLDVLLGSESFsdfldrlsALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568918956 266 KALEAKAATFEKQVLQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKLQSS 338
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
334-481 |
9.67e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568918956 334 KLQSSEVEVKSKCEELSSLHGQLKEARAENSQLTERIRSIEALLEAGQAQD----TQASHAEANQQQTRLKELESQVSCL 409
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvasAEREIAELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568918956 410 EKETSELKEAMEQQKGKNNDLREKnwkamealalaERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALL 481
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGE-----------IGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL 751
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