|
Name |
Accession |
Description |
Interval |
E-value |
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
357-1141 |
2.70e-38 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 156.10 E-value: 2.70e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 357 MEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHG------- 429
Cdd:pfam01576 189 ISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNalkkire 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 430 LEAQVKELQLKLKHSQSPDSGKESLLKDL---LDTRELLEELLEGKQRVEEQLRL-RERELTALKGALKEEVASHDQEVE 505
Cdd:pfam01576 269 LEAQISELQEDLESERAARNKAEKQRRDLgeeLEALKTELEDTLDTTAAQQELRSkREQEVTELKKALEEETRSHEAQLQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 506 HVRLQY-------QRDTEQLRRSMQDATQDHAALEAE---------------------RQKMSSLVRELQRELEETSEET 557
Cdd:pfam01576 349 EMRQKHtqaleelTEQLEQAKRNKANLEKAKQALESEnaelqaelrtlqqakqdsehkRKKLEGQLQELQARLSESERQR 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 558 GHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQ 637
Cdd:pfam01576 429 AELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 638 QNQEVTGRHQNQVLEKQLAALR-------------EEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLG 704
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKkkleedagtlealEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVD 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 705 Q-RRATVETTLRETQEEND-------------------------EFRRRILGLEQQLKEARGLAEGGEAVEARLR----- 753
Cdd:pfam01576 589 LdHQRQLVSNLEKKQKKFDqmlaeekaisaryaeerdraeaearEKETRALSLARALEEALEAKEELERTNKQLRaemed 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 754 ---------DKVHRLEVEKQQLEEALNAAREE------------------EGNLAAAK----RALEVRLDEAQRGLARLG 802
Cdd:pfam01576 669 lvsskddvgKNVHELERSKRALEQQVEEMKTQleeledelqatedaklrlEVNMQALKaqfeRDLQARDEQGEEKRRQLV 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 803 QEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDsklaLQQLQAQMEDYKekarKEVADAQRQ 882
Cdd:pfam01576 749 KQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQ----LKKLQAQMKDLQ----RELEEARAS 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 883 AKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGleqEAENKKRFQDDKARqlksLEEKVSR 962
Cdd:pfam01576 821 RDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIAS---GASGKSALQDEKRR----LEARIAQ 893
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 963 LEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGF--QKPSASLSQLE 1040
Cdd:pfam01576 894 LEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTvkSKFKSSIAALE 973
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1041 SQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQH---VNDQKDQLTLRVKALKRQVDEAEEEIERLDSLR 1117
Cdd:pfam01576 974 AKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHadqYKDQAEKGNSRMKQLKRQLEEAEEEASRANAAR 1053
|
890 900
....*....|....*....|....
gi 568924015 1118 KKAQRELEEQHEVNEQLQARIKSL 1141
Cdd:pfam01576 1054 RKLQRELDDATESNESMNREVSTL 1077
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
564-1144 |
7.12e-23 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 105.79 E-value: 7.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 564 FQKNKEELRATKQELLQLR-MEKEEMEEELGEKMEVLQRDLEQARASTR-DTHQVEELKKELRRTQGELKELQAEQQNQE 641
Cdd:COG1196 215 YRELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAeLEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 642 vtgrhqnQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEEN 721
Cdd:COG1196 295 -------AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 722 DEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARL 801
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 802 GQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEqigddsklALQQLQAQMEDYkEKARKEVADAQR 881
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--------LLLEAEADYEGF-LEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 882 QAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTArldkelLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVS 961
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV------AAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 962 RLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLES 1041
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1042 QNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQ 1121
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
570 580
....*....|....*....|...
gi 568924015 1122 RELEEQHEVNEQLQARIKSLEKD 1144
Cdd:COG1196 753 LEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
471-1142 |
5.99e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.21 E-value: 5.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 471 GKQRVEEQLRLRERELTALKGALKEEVASHDqEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQREL 550
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 551 EETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQrDLEQARASTRDthQVEELKKELRRTQGEL 630
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE-ELESRLEELEE--QLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 631 KELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQdcEEASKAKVASETEAMVLGQRRATV 710
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL--EELQEELERLEEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 711 ETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVR 790
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 791 LDEAQRgLARLGQEQQALNRA------LEEEGKQREALRRSKAELEEQKRLLNRTV---DRLNKELEQIGDDSKLA--LQ 859
Cdd:TIGR02168 554 NLNAAK-KAIAFLKQNELGRVtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVkfdPKLRKALSYLLGGVLVVddLD 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 860 QLQAQMEDYKEKARKEVADAQRQAKDWAS---EAEKNSGGLSRlQDELQRLRQALQtsQAERDTARLDKEL--LAQRLQG 934
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTLDGDLVRPGGVItggSAKTNSSILER-RREIEELEEKIE--ELEEKIAELEKALaeLRKELEE 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 935 LEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLER 1014
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1015 QNKDLKTRL-ASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQI--------------- 1078
Cdd:TIGR02168 790 QIEQLKEELkALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIeslaaeieeleelie 869
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568924015 1079 --DDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLE 1142
Cdd:TIGR02168 870 elESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
651-1168 |
2.52e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.78 E-value: 2.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 651 LEKQLAALREEAD---RGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAmvLGQRRATVETTLRETQEENDEFRRR 727
Cdd:COG1196 198 LERQLEPLERQAEkaeRYRELKEELKELEAELLLLKLRELEAELEELEAELEE--LEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 728 ILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQA 807
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 808 LNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDyKEKARKEVADAQRQAKDWA 887
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER-LERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 888 SEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKK---------------RFQDDKARQ 952
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAarllllleaeadyegFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 953 LKSLEEKVSRLEAELDEEKNTVE---------LLTDRVNRGRDQVDQLRTELMQERSARQD-LECDKISLERQNKDLKTR 1022
Cdd:COG1196 515 LLAGLRGLAGAVAVLIGVEAAYEaaleaalaaALQNIVVEDDEVAAAAIEYLKAAKAGRATfLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1023 LASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIdDERQHVNDQKDQLTLRVKALKRQ 1102
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT-LEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568924015 1103 VDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDAWRKASRSAAESALKQEGLSSDEE 1168
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-1141 |
2.61e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 100.90 E-value: 2.61e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 352 ELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLE 431
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 432 AQVKELQLKLKHSQS-PDSGKESL------LKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEV 504
Cdd:TIGR02168 316 RQLEELEAQLEELESkLDELAEELaeleekLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 505 EHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSL-VRELQRELEETS---EETGHWQSMFQKNKEELRATKQELLQ 580
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEeelEELQEELERLEEALEELREELEEAEQ 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 581 LRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKEL-----QAEQQNQEVTGRHQNQVLEKQL 655
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdeGYEAAIEAALGGRLQAVVVENL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 656 AALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLR-------------ETQEEND 722
Cdd:TIGR02168 556 NAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvDDLDNAL 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 723 EFRR------RILGLEQQLKEARGLAEGGEAVE-----------ARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKR 785
Cdd:TIGR02168 636 ELAKklrpgyRIVTLDGDLVRPGGVITGGSAKTnssilerrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 786 ALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDsklaLQQLQAQM 865
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE----IEELEAQI 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 866 EDYKEkarkevadaqrqakdwasEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRF 945
Cdd:TIGR02168 792 EQLKE------------------ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 946 QDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLAS 1025
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1026 SEgfQKPSASLSQLESQNQLLQERLQAEEREKTVLQStnrKLERRVKELSIQIdDERQHVN----DQKDQLTLRVKALKR 1101
Cdd:TIGR02168 934 LE--VRIDNLQERLSEEYSLTLEEAEALENKIEDDEE---EARRRLKRLENKI-KELGPVNlaaiEEYEELKERYDFLTA 1007
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 568924015 1102 QVDEAEEEIERLDSLRKKAQRELEEQ-----HEVNEQLQARIKSL 1141
Cdd:TIGR02168 1008 QKEDLTEAKETLEEAIEEIDREARERfkdtfDQVNENFQRVFPKL 1052
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
473-970 |
9.13e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.86 E-value: 9.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 473 QRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQL---RRSMQDATQDHAALEAERQKMSSLVRELQRE 549
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELeeaQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 550 LEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRdthQVEELKKELRRTQGE 629
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE---ELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 630 LKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRAT 709
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 710 VETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAveARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEV 789
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA--ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 790 RLDEAQRGLARLGQEQQALNRA----LEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQM 865
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRAtflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 866 EDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRF 945
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
490 500
....*....|....*....|....*
gi 568924015 946 QDDKARQLKSLEEKVSRLEAELDEE 970
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREEL 737
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
345-912 |
8.28e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 92.69 E-value: 8.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 345 KALAGQAELTRKMEELQKKLDEevKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQee 424
Cdd:COG1196 203 EPLERQAEKAERYRELKEELKE--LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE-- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 425 glrhgLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEV 504
Cdd:COG1196 279 -----LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 505 EHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRME 584
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 585 KEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVtgRHQNQVLEKQLAALREEADR 664
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA--RLLLLLEAEADYEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 665 GRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMV----------------LGQRRATVETTLRETQEENDEFRRRI 728
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQnivveddevaaaaieyLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 729 LGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQAL 808
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 809 NRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWAS 888
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580
....*....|....*....|....*.
gi 568924015 889 EAEKNSGGLSR--LQDELQRLRQALQ 912
Cdd:COG1196 752 ALEELPEPPDLeeLERELERLEREIE 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
352-1143 |
1.39e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.50 E-value: 1.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 352 ELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQsskelqnmkllLGQEEGLRhgLE 431
Cdd:TIGR02169 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD-----------LGEEEQLR--VK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 432 AQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQY 511
Cdd:TIGR02169 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 512 QRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMfqknKEELRATKQELLQLRMEKEEMEEE 591
Cdd:TIGR02169 374 EEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL----NAAIAGIEAKINELEEEKEDKALE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 592 LGEKMEVLQR---DLEQARASTRDTHQ-VEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLE-------------KQ 654
Cdd:TIGR02169 450 IKKQEWKLEQlaaDLSKYEQELYDLKEeYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEvlkasiqgvhgtvAQ 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 655 LAALREEADRGRELEQQNLQLQ--KTLQQLRQDCEEASKAKVASE-------------------TEAMVLG--------- 704
Cdd:TIGR02169 530 LGSVGERYATAIEVAAGNRLNNvvVEDDAVAKEAIELLKRRKAGRatflplnkmrderrdlsilSEDGVIGfavdlvefd 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 705 -QRRATVETTLRETQ-EENDEFRRRILG------LEQQLKEARGLAEGG-------EAVEARLRDKVHRLEVEKQQLEEA 769
Cdd:TIGR02169 610 pKYEPAFKYVFGDTLvVEDIEAARRLMGkyrmvtLEGELFEKSGAMTGGsraprggILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 770 LNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQ 849
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 850 IgddsKLALQQLQAQMEDYKekarkevadaqrqAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLA 929
Cdd:TIGR02169 770 L----EEDLHKLEEALNDLE-------------ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 930 QRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDK 1009
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1010 ISLERQNKDLKTRLASSEGfqkpsaSLSQLESQNQLLQERLQAEEREKTVlQSTNRKLERRVKELsiqidderQHVNdqk 1089
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEE------ELSEIEDPKGEDEEIPEEELSLEDV-QAELQRVEEEIRAL--------EPVN--- 974
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 568924015 1090 dqltlrvkalKRQVDEAEEEIERLDSLRKKAQRELEEQhevnEQLQARIKSLEK 1143
Cdd:TIGR02169 975 ----------MLAIQEYEEVLKRLDELKEKRAKLEEER----KAILERIEEYEK 1014
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
615-1168 |
2.44e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 2.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 615 QVEELKKELRRTQGELkELQAEQQNQEVTGRHQNQVLEKQLAALREEadrgrELEQQNLQLQKTLQQLRQDCEEASKAKV 694
Cdd:TIGR02168 190 RLEDILNELERQLKSL-ERQAEKAERYKELKAELRELELALLVLRLE-----ELREELEELQEELKEAEEELEELTAELQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 695 ASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARglaeggeAVEARLRDKVHRLEVEKQQLEEALNAAR 774
Cdd:TIGR02168 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-------ERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 775 EEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDS 854
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 855 KLALQQLQAQMEDYKEKARKEVadaQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQG 934
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAELKEL---QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 935 LEQEAENKKRFQDDKARQLKSLEEK---VSRL------EAELDEEKNTV--ELLTDRVNRGRDQVDQLRTELMQERSARQ 1003
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNQSGLsgiLGVLselisvDEGYEAAIEAAlgGRLQAVVVENLNAAKKAIAFLKQNELGRV 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1004 D-LECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDD-- 1080
Cdd:TIGR02168 574 TfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgd 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1081 ------------------------ERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQ----HEVNE 1132
Cdd:TIGR02168 654 lvrpggvitggsaktnssilerrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELsrqiSALRK 733
|
570 580 590
....*....|....*....|....*....|....*.
gi 568924015 1133 QLQARIKSLEKDAWRKASRSAAESALKQEGLSSDEE 1168
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-969 |
1.31e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 351 AELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGL 430
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 431 EAQVKELQLKLKHSQspdsgKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLq 510
Cdd:TIGR02168 420 QQEIEELLKKLEEAE-----LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS- 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 511 yqrdTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELE-----ETSEET---GHWQSMFQKNKEELRATKQELLQLR 582
Cdd:TIGR02168 494 ----LERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyEAAIEAalgGRLQAVVVENLNAAKKAIAFLKQNE 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 583 MEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVE-------------------------------ELKKELRR------ 625
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAkdlvkfdpklrkalsyllggvlvvddldnalELAKKLRPgyrivt 649
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 626 -------------------------TQGELKELQAEQQNQEVtgrhQNQVLEKQLAALREEADRGRELEQQNLQLQktlq 680
Cdd:TIGR02168 650 ldgdlvrpggvitggsaktnssileRRREIEELEEKIEELEE----KIAELEKALAELRKELEELEEELEQLRKEL---- 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 681 qlrqdcEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLE 760
Cdd:TIGR02168 722 ------EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 761 VEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKrllnrtv 840
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI------- 868
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 841 DRLNKELEqigddsklALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAeknsgglSRLQDELQRLRQALQTSQAERDT 920
Cdd:TIGR02168 869 EELESELE--------ALLNERASLEEALALLRSELEELSEELRELESKR-------SELRRELEELREKLAQLELRLEG 933
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 568924015 921 ARLDKELLAQRLQGLEQ-EAENKKRFQDDKARQLKSLEEKVSRLEAELDE 969
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
350-1018 |
2.05e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 78.64 E-value: 2.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 350 QAELTRKMEELQKKldEEVKK----RQKLEPSRVGLERQLEE--KAEECHRLQE---LLERRKGEVQQSSKELQNMKLLL 420
Cdd:PTZ00121 1123 KAEDARKAEEARKA--EDARKaeeaRKAEDAKRVEIARKAEDarKAEEARKAEDakkAEAARKAEEVRKAEELRKAEDAR 1200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 421 GQEEGLRHGLEAQVKELQLKLKHSQSPDSGK-ESLLKDLLDTRELLEELLEGKQRVEEQLRLREreLTALKGALKEEVAS 499
Cdd:PTZ00121 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAH--FARRQAAIKAEEAR 1278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 500 HDQEVEhvRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELL 579
Cdd:PTZ00121 1279 KADELK--KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 580 QLRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKK---ELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLA 656
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKkaeEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 657 ALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVAseteamvlgQRRATVETTLRETQEENDEFRRRILGLEQQLK 736
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA---------KKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 737 EARGLAEGGEAVEARLRDKVHRLEvEKQQLEEALNAarEEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALeeeg 816
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKA--EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL---- 1580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 817 KQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQmedykEKARKEVADAQRQAKDWASEAEKnsgg 896
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-----EEEKKKVEQLKKKEAEEKKKAEE---- 1651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 897 lSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEE----KVSRLEAELDEEKN 972
Cdd:PTZ00121 1652 -LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAeekkKAEELKKAEEENKI 1730
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 568924015 973 TVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKD 1018
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
623-1136 |
2.15e-14 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 78.16 E-value: 2.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 623 LRRTQGELKELQAEQQNQEVTGRHQN-QVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAM 701
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERlNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 702 VLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEAL-------NAAR 774
Cdd:PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLeecrvaaQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 775 EEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDs 854
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE- 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 855 KLALQQLQAQMEDYKEKARKEVADAQR-QAKDWASEAEKNSGGlSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQ 933
Cdd:PRK02224 421 RDELREREAELEATLRTARERVEEAEAlLEAGKCPECGQPVEG-SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 934 GLEQEAENKKRFQddkarqlkSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDK---- 1009
Cdd:PRK02224 500 RAEDLVEAEDRIE--------RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAeear 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1010 ---ISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQA-----EEREKTVLQSTNRKLE------------- 1068
Cdd:PRK02224 572 eevAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREAlaelnDERRERLAEKRERKREleaefdearieea 651
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568924015 1069 ----RRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQReLEEQHEVNEQLQA 1136
Cdd:PRK02224 652 redkERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEA-LEALYDEAEELES 722
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
345-1144 |
5.79e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 5.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 345 KALAGQAELTRKMEELQKKLDEEVKKRQKLEPSRvglerqleEKAEECHRLQELLERRKGevqqsskelqnmKLLLGQEE 424
Cdd:TIGR02169 174 KALEELEEVEENIERLDLIIDEKRQQLERLRRER--------EKAERYQALLKEKREYEG------------YELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 425 GLRHGLEAQVKELqlklkhsqspdSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKG-ALKEEVASHDQE 503
Cdd:TIGR02169 234 ALERQKEAIERQL-----------ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 504 VEhvrlQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRM 583
Cdd:TIGR02169 303 IA----SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 584 EKEEMEEELGEkmevLQRDLEQArastrdTHQVEELKKELRRTQGELKELQAEQQNQevtgRHQNQVLEKQLAALREEAd 663
Cdd:TIGR02169 379 EFAETRDELKD----YREKLEKL------KREINELKRELDRLQEELQRLSEELADL----NAAIAGIEAKINELEEEK- 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 664 rgreleqqnlqlqktlqqlrqdcEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAE 743
Cdd:TIGR02169 444 -----------------------EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 744 -------GGEAVEARLRDK---VHRLEVEKQQLEEALNAAREEEG----------NLAAAKRALEVRLDE---------- 793
Cdd:TIGR02169 501 aseervrGGRAVEEVLKASiqgVHGTVAQLGSVGERYATAIEVAAgnrlnnvvveDDAVAKEAIELLKRRkagratflpl 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 794 ----AQRGLARLGQEQQALNRAL---EEEGKQREALRRSKAE------LEEQKRLLN--RTVDRLNKELEQI-----GDD 853
Cdd:TIGR02169 581 nkmrDERRDLSILSEDGVIGFAVdlvEFDPKYEPAFKYVFGDtlvvedIEAARRLMGkyRMVTLEGELFEKSgamtgGSR 660
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 854 SKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEaeknsggLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQ 933
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE-------LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 934 GLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNR-----GRDQVDQLRTELMQERSARQDLECD 1008
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEAR 813
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1009 KISLERQNKDLKTRLASSEgfqkpsASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQI---DDERQHV 1085
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLE------KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALrdlESRLGDL 887
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*....
gi 568924015 1086 NDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKD 1144
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
705-1142 |
4.64e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 73.92 E-value: 4.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 705 QRRATVET--TLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAA 782
Cdd:PRK02224 228 QREQARETrdEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 783 AKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIG---DDSKLALQ 859
Cdd:PRK02224 308 DAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAReavEDRREEIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 860 QLQAQMEDykekARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQ------------------------ 915
Cdd:PRK02224 388 ELEEEIEE----LRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARerveeaealleagkcpecgqpveg 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 916 ------------------AERDTARLDKELLAQRLQGLEQEAENKKRFQddkarqlkSLEEKVSRLEAELDEEKNTVELL 977
Cdd:PRK02224 464 sphvetieedrerveeleAELEDLEEEVEEVEERLERAEDLVEAEDRIE--------RLEERREDLEELIAERRETIEEK 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 978 TDRVNRGRDQVDQLRTELMQERSARQDLECDK-------ISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERL 1050
Cdd:PRK02224 536 RERAEELRERAAELEAEAEEKREAAAEAEEEAeeareevAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKR 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1051 QAEEREKTVLQSTNRKLERRVKELSIQIDDER---------------QHVNDQKDQLTLRVKALKRQVDEAEEEIERLDS 1115
Cdd:PRK02224 616 EALAELNDERRERLAEKRERKRELEAEFDEARieearedkeraeeylEQVEEKLDELREERDDLQAEIGAVENELEELEE 695
|
490 500
....*....|....*....|....*..
gi 568924015 1116 LRKKaQRELEEQHEVNEQLQARIKSLE 1142
Cdd:PRK02224 696 LRER-REALENRVEALEALYDEAEELE 721
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
712-1174 |
2.00e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 71.87 E-value: 2.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 712 TTLRETQEENDEFRRR------ILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEkqQLEEALNAAREEEGNLAAAKR 785
Cdd:COG4913 235 DDLERAHEALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQRRLE--LLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 786 ALEVRLDEAQRglarlgQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIG---DDSKLALQQLQ 862
Cdd:COG4913 313 RLEARLDALRE------ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGlplPASAEEFAALR 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 863 AQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARldkELLAQRLQGLEQE---- 938
Cdd:COG4913 387 AEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR---DALAEALGLDEAElpfv 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 939 ------AENKKRFQDDKARQLKSL-------EEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTE----------- 994
Cdd:COG4913 464 gelievRPEEERWRGAIERVLGGFaltllvpPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDpdslagkldfk 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 995 -------LMQERSARQDLEC----------DK-ISLERQNKDLKTRLASseGFQKPSASLSQLESQN----QLLQERLQA 1052
Cdd:COG4913 544 phpfrawLEAELGRRFDYVCvdspeelrrhPRaITRAGQVKGNGTRHEK--DDRRRIRSRYVLGFDNraklAALEAELAE 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1053 EEREKTVLQSTNRKLERRVKELSIQ-------------------IDDERQHVNDQKDQLTL---RVKALKRQVDEAEEEI 1110
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERrealqrlaeyswdeidvasAEREIAELEAELERLDAssdDLAALEEQLEELEAEL 701
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568924015 1111 ERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDAWRKASRSAAESALKQEGLSSDEEFDNVYD 1174
Cdd:COG4913 702 EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER 765
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
763-1122 |
2.47e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 763 KQQLEEALNAAREEEGNLAAakraLEVRLDEAQRGLARLGQEQQALNRALE----EEGKQREALRRSKAELEEQKRLLNR 838
Cdd:TIGR02168 171 KERRKETERKLERTRENLDR----LEDILNELERQLKSLERQAEKAERYKElkaeLRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 839 TVDRLNKELEQIGDDSKLALQQLQaQMEDYKEKARKEVADAQRQAKDWASEaeknsggLSRLQDELQRLRQALQTSQAER 918
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANE-------ISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 919 DTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQE 998
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 999 RSARQDLECDKISLERQNKDLKTrlassegfQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQI 1078
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQ--------EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 568924015 1079 D---DERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQR 1122
Cdd:TIGR02168 471 EeaeQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
348-1168 |
5.19e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 70.77 E-value: 5.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 348 AGQAELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGE---------VQQSSKELQNMKL 418
Cdd:pfam02463 162 AAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLeleeeyllyLDYLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 419 LLGQEEGLRHGLEAQVKELQL---KLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKE 495
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKeeeKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 496 EVASHDQEV----------EHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQ 565
Cdd:pfam02463 322 EKKKAEKELkkekeeieelEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 566 KNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARA-STRDTHQVEELKKELRRTQGELKELQAEQQNQEVTG 644
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGkLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 645 RHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDC--EEASKAKVASETEAMVLGQRRATVETTLRETQEEND 722
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRiiSAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 723 EFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLG 802
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 803 QEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQ 882
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 883 AKDWASEAEKNSGGLsRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSR 962
Cdd:pfam02463 722 LLADRVQEAQDKINE-ELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQE 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 963 LEAELDEEKNTVELLTDRvnrgRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEgfqkpsaSLSQLESQ 1042
Cdd:pfam02463 801 EELRALEEELKEEAELLE----EEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEE-------EITKEELL 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1043 NQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQR 1122
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKE 949
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 568924015 1123 ELEEQHEVNEQLQARIKSLEKDAWRKASRSAAESALKQEGLSSDEE 1168
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDEL 995
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
760-1111 |
7.98e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 7.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 760 EVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEG----KQREALRRSKAELEEQKRL 835
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGyellKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 836 LNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQ 915
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 916 AERDTARLDKELLAQRLQ-------GLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQV 988
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEeerkrrdKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 989 DQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEgfqkpsASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLE 1068
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA------LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568924015 1069 RRVKELSIQIDDerqhVNDQKDQLTLRVKALKRQVDEAEEEIE 1111
Cdd:TIGR02169 483 KELSKLQRELAE----AEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
858-1182 |
1.30e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 858 LQQLQAQMEDYKEKARKevadaQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQtsQAERDTARLDKELLAQRLQGLEQ 937
Cdd:COG1196 195 LGELERQLEPLERQAEK-----AERYRELKEELKELEAELLLLKLRELEAELEEL--EAELEELEAELEELEAELAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 938 EAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNK 1017
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1018 DLKTRLASSEG-FQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRV 1096
Cdd:COG1196 348 EAEEELEEAEAeLAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1097 KALKRQVDEAEEEIERLDSlRKKAQRELEEQHEVNEQLQARIKS---LEKDAWRKASRSAAESALKQEGLSSDEEFDNVY 1173
Cdd:COG1196 428 EALAELEEEEEEEEEALEE-AAEEEAELEEEEEALLELLAELLEeaaLLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
....*....
gi 568924015 1174 DPSSIASLL 1182
Cdd:COG1196 507 LEGVKAALL 515
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
352-1191 |
2.14e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 68.61 E-value: 2.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 352 ELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAeecHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLE 431
Cdd:pfam15921 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTV---HELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIR 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 432 AQVKELQlklkhsqsPDSGKESLLKDLLDTRELLEELLEgkqrVEEQLRLRERELTALKG-------ALKEEVASHDQEV 504
Cdd:pfam15921 191 SILVDFE--------EASGKKIYEHDSMSTMHFRSLGSA----ISKILRELDTEISYLKGrifpvedQLEALKSESQNKI 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 505 EHVRLQYQRDTEQLrrsMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQEllqlrme 584
Cdd:pfam15921 259 ELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQ------- 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 585 keemeeelgekmevLQRDLEQARASTRDthQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREeadR 664
Cdd:pfam15921 329 --------------LRSELREAKRMYED--KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHK---R 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 665 GRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEG 744
Cdd:pfam15921 390 EKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 745 GEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQR----- 819
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRnvqte 549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 820 -EALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKlALQQLQAQMEdykekarKEVADAQRQAKDWASEAEKNSGGLS 898
Cdd:pfam15921 550 cEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAG-AMQVEKAQLE-------KEINDRRLELQEFKILKDKKDAKIR 621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 899 RLQDELQRLR-QALQTSQAERDTARLDKELLAQRLQGLEQEAENKKrfqddkarQLKSLEEKVSRLEAELDEEKNTVELL 977
Cdd:pfam15921 622 ELEARVSDLElEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN--------ELNSLSEDYEVLKRNFRNKSEEMETT 693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 978 TdrvNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGfqkpsaSLSQLESQNQLLQERLQAEEREK 1057
Cdd:pfam15921 694 T---NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRG------QIDALQSKIQFLEEAMTNANKEK 764
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1058 TVLQSTNRKLERRVKELSIQ---IDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKaqrelEEQHEVNEQL 1134
Cdd:pfam15921 765 HFLKEEKNKLSQELSTVATEknkMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR-----QEQESVRLKL 839
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 568924015 1135 QARIKSLEKDAWRKASRSAAESALKQEGlSSDEEFDNVYDPSSIASLLTESNLQTSS 1191
Cdd:pfam15921 840 QHTLDVKELQGPGYTSNSSMKPRLLQPA-SFTRTHSNVPSSQSTASFLSHHSRKTNA 895
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
910-1162 |
3.93e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 66.33 E-value: 3.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 910 ALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVD 989
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 990 QLRTELMQERSARQDLECDKISLERQNKDLktRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLER 1069
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLA--LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1070 RVKELSIQIDDERQhvndqkdqltlRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDAWRKA 1149
Cdd:COG4942 172 ERAELEALLAELEE-----------ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
250
....*....|...
gi 568924015 1150 SRSAAESALKQEG 1162
Cdd:COG4942 241 ERTPAAGFAALKG 253
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
750-985 |
9.91e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.17 E-value: 9.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 750 ARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAEL 829
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 830 EEQKRLLNRTVDRLNK--ELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDwasEAEKNSGGLSRLQDELQRL 907
Cdd:COG4942 103 KEELAELLRALYRLGRqpPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA---ELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568924015 908 RQALQTSQAERDTARLDKEllaQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGR 985
Cdd:COG4942 180 LAELEEERAALEALKAERQ---KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
780-1001 |
1.04e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.17 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 780 LAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGD---DSKL 856
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 857 ALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLE 936
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568924015 937 QEAENKKRFQDDKARQLKSLE-------EKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSA 1001
Cdd:COG4942 171 AERAELEALLAELEEERAALEalkaerqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
473-983 |
1.46e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 65.71 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 473 QRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQ----RDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQR 548
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 549 ELEETSEEtghwqsmFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQ---------ARASTRDTHQV--- 616
Cdd:COG4913 374 PLPASAEE-------FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREleaeiasleRRKSNIPARLLalr 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 617 EELKKELRRTQ------GELKELQAEQQNQE---------------VTGRHQNQVLEkqlaALREEADRGREleQQNLQL 675
Cdd:COG4913 447 DALAEALGLDEaelpfvGELIEVRPEEERWRgaiervlggfaltllVPPEHYAAALR----WVNRLHLRGRL--VYERVR 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 676 QKTLQQLRQDCEEAS-------KAKVASETEAMVLGQR--RATVET---------------------TLRETQEENDEFR 725
Cdd:COG4913 521 TGLPDPERPRLDPDSlagkldfKPHPFRAWLEAELGRRfdYVCVDSpeelrrhpraitragqvkgngTRHEKDDRRRIRS 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 726 RRILG---------LEQQLKEARGLAEGGEAVEARLRDKVHRLEvEKQQLEEALNAAREEEGNLAAAKRALE------VR 790
Cdd:COG4913 601 RYVLGfdnraklaaLEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEYSWDEIDVASAEREIAeleaelER 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 791 LDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMedYKE 870
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER--FAA 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 871 KARKEVadAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQtSQAERDTARLDKELLA-----QRLQGLEQE--AENKK 943
Cdd:COG4913 758 ALGDAV--ERELRENLEERIDALRARLNRAEEELERAMRAFN-REWPAETADLDADLESlpeylALLDRLEEDglPEYEE 834
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 568924015 944 RFQDdkaRQLKSLEEKVSRLEAELDEEKNTVELLTDRVNR 983
Cdd:COG4913 835 RFKE---LLNENSIEFVADLLSKLRRAIREIKERIDPLND 871
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
351-1127 |
3.36e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.61 E-value: 3.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 351 AELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGL 430
Cdd:pfam02463 198 QELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 431 EAQVKELQLKLKHSQSPdsgKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEvashdqevEHVRLQ 510
Cdd:pfam02463 278 EKEKKLQEEELKLLAKE---EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEEL--------EKELKE 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 511 YQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEE 590
Cdd:pfam02463 347 LEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 591 ELGEKMEVLQRDLEQARAS-TRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELE 669
Cdd:pfam02463 427 EELEILEEEEESIELKQGKlTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 670 QQNLQLQKTLQQLRQDC--EEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEA 747
Cdd:pfam02463 507 SGLKVLLALIKDGVGGRiiSAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPK 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 748 VEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAA-------KRALEVRLDEAQRGLARLGQEQQALNRALEEEGK--Q 818
Cdd:pfam02463 587 LKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkvvegilKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEvkA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 819 REALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLS 898
Cdd:pfam02463 667 SLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKID 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 899 RLQDELQRLRQALQTSQAER-----DTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNT 973
Cdd:pfam02463 747 EEEEEEEKSRLKKEEKEEEKselslKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQ 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 974 VELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAE 1053
Cdd:pfam02463 827 EEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEES 906
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1054 EREKTVLQSTNRKLERRVKELSIQIDDERQHVND-------------------QKDQLTLRVKALKRQVD---------- 1104
Cdd:pfam02463 907 QKLNLLEEKENEIEERIKEEAEILLKYEEEPEELlleeadekekeennkeeeeERNKRLLLAKEELGKVNlmaieefeek 986
|
810 820
....*....|....*....|....*...
gi 568924015 1105 -----EAEEEIERLDSLRKKAQRELEEQ 1127
Cdd:pfam02463 987 eerynKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
354-1184 |
4.16e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 64.43 E-value: 4.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 354 TRKMEELQKKLDEEVK-----------------KRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNM 416
Cdd:pfam01576 1 TRQEEEMQAKEEELQKvkerqqkaeselkelekKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 417 KLLLGQEEGLRHGLEAQVKELQLKLK----HSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGA 492
Cdd:pfam01576 81 ESRLEEEEERSQQLQNEKKKMQQHIQdleeQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 493 LKEEVASHDQEVEHV------RLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQK 566
Cdd:pfam01576 161 ISEFTSNLAEEEEKAkslsklKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 567 NKEELRATKQELLQ---LRMEKEEMEEELGEKMEVLQRDLEQARAS-TRDTHQVEELKKELRRTQGELKE-LQAEQQNQE 641
Cdd:pfam01576 241 KEEELQAALARLEEetaQKNNALKKIRELEAQISELQEDLESERAArNKAEKQRRDLGEELEALKTELEDtLDTTAAQQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 642 VTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEEN 721
Cdd:pfam01576 321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 722 DEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARL 801
Cdd:pfam01576 401 QDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 802 GQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEqigdDSKLALQQLQA---QMEDYKEKARKEVAD 878
Cdd:pfam01576 481 TRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLS----DMKKKLEEDAGtleALEEGKKRLQRELEA 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 879 AQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQ-----TSQAERDTARLDkellaqrlQGLEQEAENKKRFQDDKARQL 953
Cdd:pfam01576 557 LTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDhqrqlVSNLEKKQKKFD--------QMLAEEKAISARYAEERDRAE 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 954 KSLEEKVSR---LEAELDEEKNTVELLtDRVNRgrdqvdQLRTELMQERSARQD-------LECDKISLERQNKDLKTRL 1023
Cdd:pfam01576 629 AEAREKETRalsLARALEEALEAKEEL-ERTNK------QLRAEMEDLVSSKDDvgknvheLERSKRALEQQVEEMKTQL 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1024 ASSEG-FQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRK-LERRVKELSIQIDDERQH---VNDQKDQLTLRVKA 1098
Cdd:pfam01576 702 EELEDeLQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRqLVKQVRELEAELEDERKQraqAVAAKKKLELDLKE 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1099 LKRQV-------DEAEEEIERLDSLRKKAQRELEEQHEVNEQLQA-------RIKSLEKDAWR-KASRSAAESALKQEGL 1163
Cdd:pfam01576 782 LEAQIdaankgrEEAVKQLKKLQAQMKDLQRELEEARASRDEILAqskesekKLKNLEAELLQlQEDLAASERARRQAQQ 861
|
890 900
....*....|....*....|.
gi 568924015 1164 SSDEEFDNVYDPSSIASLLTE 1184
Cdd:pfam01576 862 ERDELADEIASGASGKSALQD 882
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
516-1113 |
6.44e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.78 E-value: 6.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 516 EQLRRSMQDATQDHAALEAERQKMSSL--VRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKeemeeelg 593
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEE-------- 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 594 ekmevLQRDLEQARASTRdthQVEELKKELRRTQGELKELQAEQQNQEVtgrhqnQVLEKQLAALREEADRGRELEQQNL 673
Cdd:COG4913 300 -----LRAELARLEAELE---RLEARLDALREELDELEAQIRGNGGDRL------EQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 674 qlqktlqqlrqdcEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLR 753
Cdd:COG4913 366 -------------ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 754 DKVHRLEVEKQQLEEALNAA-REEEGNLAAAKRALEVRLDEAQ---------RGLA-RLGQEQQALNRALE--EEGKQRE 820
Cdd:COG4913 433 RRKSNIPARLLALRDALAEAlGLDEAELPFVGELIEVRPEEERwrgaiervlGGFAlTLLVPPEHYAAALRwvNRLHLRG 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 821 ALRRSKAELEEQKRLLNRTVDR----------------LNKELEQIGD----DSKLALQQ------LQAQMedYKEKARK 874
Cdd:COG4913 513 RLVYERVRTGLPDPERPRLDPDslagkldfkphpfrawLEAELGRRFDyvcvDSPEELRRhpraitRAGQV--KGNGTRH 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 875 EVADAQRQAKDW---ASEAEKnsggLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDdkar 951
Cdd:COG4913 591 EKDDRRRIRSRYvlgFDNRAK----LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID---- 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 952 qLKSLEEKVSRLEAELdeekntvelltDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLAssegfqk 1031
Cdd:COG4913 663 -VASAEREIAELEAEL-----------ERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE------- 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1032 psaslsQLESQNQLLQERLQAEEREKTVLQSTNrkLERRVKELsiqidDERQHVNDQKDQLTLRVKALKRQVDEAEEEIE 1111
Cdd:COG4913 724 ------QAEEELDELQDRLEAAEDLARLELRAL--LEERFAAA-----LGDAVERELRENLEERIDALRARLNRAEEELE 790
|
..
gi 568924015 1112 RL 1113
Cdd:COG4913 791 RA 792
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
695-1137 |
8.44e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.40 E-value: 8.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 695 ASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARG--LAEGGEAVEarlrdkvhRLEVEKQQLEEALNA 772
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAqiRGNGGDRLE--------QLEREIERLERELEE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 773 AREEEGNLAAAKRALEVRLDEAQRGLARLgqeQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEqigd 852
Cdd:COG4913 357 RERRRARLEALLAALGLPLPASAEEFAAL---RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA---- 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 853 dsklALQQLQAQMEDYKEKARKEVADA-----------------QRQAKDWASEAEK--NSGGLSRLQDELQ-------- 905
Cdd:COG4913 430 ----SLERRKSNIPARLLALRDALAEAlgldeaelpfvgelievRPEEERWRGAIERvlGGFALTLLVPPEHyaaalrwv 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 906 ---RLRQALQTSQAERDTARLD------------------------KELLAQR--------LQGLEQEA----------E 940
Cdd:COG4913 506 nrlHLRGRLVYERVRTGLPDPErprldpdslagkldfkphpfrawlEAELGRRfdyvcvdsPEELRRHPraitragqvkG 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 941 NKKRFQDDK--------------ARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTeLMQERSARQDLE 1006
Cdd:COG4913 586 NGTRHEKDDrrrirsryvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEIDVA 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1007 cdkiSLERQNKDLKTRLASsegFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKelsiQIDDERQHVN 1086
Cdd:COG4913 665 ----SAEREIAELEAELER---LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE----QAEEELDELQ 733
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 568924015 1087 DQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQAR 1137
Cdd:COG4913 734 DRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNR 784
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
788-1157 |
9.66e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 9.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 788 EVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELeqigddsklaLQQLQAqMED 867
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL----------LKEKEA-LER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 868 YKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTArldkelLAQRLQGLEQEAENKKRFQD 947
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR------VKEKIGELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 948 DKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASse 1027
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD-- 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1028 gfqkpsaslsqlesqnqlLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTlrvkALKRQVDEAE 1107
Cdd:TIGR02169 390 ------------------YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN----ELEEEKEDKA 447
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 568924015 1108 EEI-------ERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKD-AWRKASRSAAESA 1157
Cdd:TIGR02169 448 LEIkkqewklEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRElAEAEAQARASEER 505
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
394-1143 |
1.41e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 62.76 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 394 RLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQSPDSGKESL---LKDLLDTRELLEELLE 470
Cdd:TIGR00606 190 TLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLknrLKEIEHNLSKIMKLDN 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 471 GKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQREL 550
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQ 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 551 EETS--EETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDthqVEELKKELRRTQG 628
Cdd:TIGR00606 350 GRLQlqADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQL---CADLQSKERLKQE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 629 ELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEA-----MVL 703
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETlkkevKSL 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 704 GQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEaveaRLRDKVHRLEVE----------KQQLEEALNAA 773
Cdd:TIGR00606 507 QNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDE----QIRKIKSRHSDEltsllgyfpnKKQLEDWLHSK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 774 REEegnlaaaKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLlNRTVDRLNKELEQIGDD 853
Cdd:TIGR00606 583 SKE-------INQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDE-ESDLERLKEEIEKSSKQ 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 854 SKLaLQQLQAQMEDYKEKARKE------VADAQRQAKDWASEAEKNSGGLSRL-QDELQRLRQALQTSQAERDTARLDKE 926
Cdd:TIGR00606 655 RAM-LAGATAVYSQFITQLTDEnqsccpVCQRVFQTEAELQEFISDLQSKLRLaPDKLKSTESELKKKEKRRDEMLGLAP 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 927 LLAQRLQGLEQEA----ENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDR--VNRGRDQVDQLRTELMQERS 1000
Cdd:TIGR00606 734 GRQSIIDLKEKEIpelrNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVtiMERFQMELKDVERKIAQQAA 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1001 ARQ----DLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLEsQNQLLQERLQAEEREKTVLQST---NRKLERRVKE 1073
Cdd:TIGR00606 814 KLQgsdlDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE-QIQHLKSKTNELKSEKLQIGTNlqrRQQFEEQLVE 892
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1074 LSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEK 1143
Cdd:TIGR00606 893 LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
324-669 |
3.14e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 3.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 324 RKVSLVLEQMQPLGMVSPASTKALAGQAELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRK 403
Cdd:TIGR02168 646 RIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 404 GEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRE 483
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 484 RELTALKGALKEEVASHDQEVEhvrlQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSM 563
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLE----SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 564 FQKNKEELRATKQELLQLRMEKEEMEEELGEkmevLQRDLEQARASTRDTH-QVEELKKELRRTQGELKELQaeQQNQEV 642
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSE----LRRELEELREKLAQLElRLEGLEVRIDNLQERLSEEY--SLTLEE 955
|
330 340
....*....|....*....|....*..
gi 568924015 643 TGRHQNQVLEKQLAALREEADRGRELE 669
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
346-779 |
3.71e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 3.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 346 ALAGQAELTRKMEELQKKLDEEVKKRQKLEPSRVGLER--QLEEKAEECHRLQELleRRKGEVQQSSKELQNMKLLLGQE 423
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKadEAKKKAEEKKKADEA--KKKAEEAKKADEAKKKAEEAKKA 1459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 424 EGLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRE--RELTALKGALKEEVASHD 501
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEeaKKADEAKKAEEAKKADEA 1539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 502 QEVEHVRLQYQ-RDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQ 580
Cdd:PTZ00121 1540 KKAEEKKKADElKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 581 LRMEKEEMEEELGEKMEVLQRDLEQARastRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALRE 660
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEK---KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 661 EADRGRELEQ--QNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRAtveTTLRETQEENDEFRRRILGLEQQLKEA 738
Cdd:PTZ00121 1697 EAEEAKKAEElkKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA---EEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 568924015 739 RGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGN 779
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGG 1814
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
350-953 |
4.11e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 4.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 350 QAELTRKMEELQKKLDEEVKK----RQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEG 425
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKadaaKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 426 LRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEEL-LEGKQRVEEQLRLRERELTALKGALKEEVASHDQEv 504
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKaDEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE- 1468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 505 ehvrlqyQRDTEQLRRSMQDATQ-DHAALEAERQKMSSlvRELQRELEETSEETGHWQSMFQKNKEELRAT--KQELLQL 581
Cdd:PTZ00121 1469 -------AKKADEAKKKAEEAKKaDEAKKKAEEAKKKA--DEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeAKKADEA 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 582 RMEKEEMEEELGEKMEVLQ-----RDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLA 656
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEELKkaeekKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 657 ALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLK 736
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 737 EARGLAE--GGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEgnlaaAKRALEVRLDEAQRGlaRLGQEQQALNRALEE 814
Cdd:PTZ00121 1700 EAKKAEElkKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED-----KKKAEEAKKDEEEKK--KIAHLKKEEEKKAEE 1772
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 815 EGKQREALrrSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKE---KARKEVADAQRQAKDWASEAE 891
Cdd:PTZ00121 1773 IRKEKEAV--IEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEmedSAIKEVADSKNMQLEEADAFE 1850
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568924015 892 KNSGGLSRLQDElqrlrqalqTSQAERDTARlDKELLAQRLQGLEQEAENKKRFQDDKARQL 953
Cdd:PTZ00121 1851 KHKFNKNNENGE---------DGNKEADFNK-EKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
352-995 |
7.42e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 7.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 352 ELTRKMEELQKKL--DEEVKKRQKlepsrvGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLR-- 427
Cdd:PRK03918 173 EIKRRIERLEKFIkrTENIEELIK------EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEke 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 428 -HGLEAQVKELQLKLKHSQSPDSGKESLLKDLldtrelleellegKQRVEEQLRLRERELTALK-GALKEEVASHDQEVE 505
Cdd:PRK03918 247 lESLEGSKRKLEEKIRELEERIEELKKEIEEL-------------EEKVKELKELKEKAEEYIKlSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 506 HVRLQYQRDTEQLRRSMQDATQDhaalEAERQKMSSLVRELQRELEETSEetghwqsmFQKNKEELRATKQELLQLRMEK 585
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEE--------RHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 586 EEMEEELgekmevLQRDLEqarastrdthQVEELKKELRRtqgELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRG 665
Cdd:PRK03918 382 TGLTPEK------LEKELE----------ELEKAKEEIEE---EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 666 RELEqqnlqlqktlqqlrqdcEEASKAKVASETEAMvlgqrrATVETTLRETQEENDEFRRRILGLEQQLKEARGLaegg 745
Cdd:PRK03918 443 RELT-----------------EEHRKELLEEYTAEL------KRIEKELKEIEEKERKLRKELRELEKVLKKESEL---- 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 746 eaveARLRDKVHRLEvekqQLEEALNAAREEEgnLAAAKRALEvrldEAQRGLARLGQEQQALNRALEEEgkqrEALRRS 825
Cdd:PRK03918 496 ----IKLKELAEQLK----ELEEKLKKYNLEE--LEKKAEEYE----KLKEKLIKLKGEIKSLKKELEKL----EELKKK 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 826 KAELEEQKRLLNRTVDRLNKELEQIG----DDSKLALQQLQAQMEDYKE--KARKEVADAQRQAKDWASEAEKNSGGLSR 899
Cdd:PRK03918 558 LAELEKKLDELEEELAELLKELEELGfesvEELEERLKELEPFYNEYLElkDAEKELEREEKELKKLEEELDKAFEELAE 637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 900 LQDELQRLR---QALQTSQAERDTARLDKEL--LAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEaELDEEKNTV 974
Cdd:PRK03918 638 TEKRLEELRkelEELEKKYSEEEYEELREEYleLSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKL 716
|
650 660
....*....|....*....|.
gi 568924015 975 ELLTDRVNRGRDQVDQLRTEL 995
Cdd:PRK03918 717 EKALERVEELREKVKKYKALL 737
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
472-1081 |
1.95e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 472 KQRVEEQLRLRERELTALKgalkEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELE 551
Cdd:pfam15921 266 QDRIEQLISEHEVEITGLT----EKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 552 ETSEETGHWQSMFQKNKEELRATKQELLQ---------------LRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQV 616
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERDQFSQesgnlddqlqklladLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 617 EELKKELRRTQGELKELQAEQQNQevtgrhqnqvLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVAS 696
Cdd:pfam15921 422 DDRNMEVQRLEALLKAMKSECQGQ----------MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 697 ETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGE------------AVEARLRDKVHR------ 758
Cdd:pfam15921 492 ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDhlrnvqtecealKLQMAEKDKVIEilrqqi 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 759 ----------------LEVEKQQLEEALNAAREEEGNLAAAK-------RALEVRLDEAQRGLARLGQEQQALNRALEEE 815
Cdd:pfam15921 572 enmtqlvgqhgrtagaMQVEKAQLEKEINDRRLELQEFKILKdkkdakiRELEARVSDLELEKVKLVNAGSERLRAVKDI 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 816 GKQREAL-------RRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARK-EVAD--AQRQAKD 885
Cdd:pfam15921 652 KQERDQLlnevktsRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmEGSDghAMKVAMG 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 886 WASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEA 965
Cdd:pfam15921 732 MQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 966 ELDEEKNTVELLTDRVNRGRDQVDQLRtelMQERSARQDLECDKISlerQNKDLKTRLASSEGFQKPSASLSQLESQNQL 1045
Cdd:pfam15921 812 ALDKASLQFAECQDIIQRQEQESVRLK---LQHTLDVKELQGPGYT---SNSSMKPRLLQPASFTRTHSNVPSSQSTASF 885
|
650 660 670
....*....|....*....|....*....|....*.
gi 568924015 1046 LQERlqaEEREKTVLQSTNRKLERRVKELSIQIDDE 1081
Cdd:pfam15921 886 LSHH---SRKTNALKEDPTRDLKQLLQELRSVINEE 918
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
928-1142 |
2.00e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 58.49 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 928 LAQRLQGLEQEAENKKRFQDDkarQLKSLEEKVSRLEAELDE--EKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDL 1005
Cdd:COG3206 162 LEQNLELRREEARKALEFLEE---QLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1006 ECDKISLERQ---NKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREktvLQSTNRKLERRVKELSIQIDDER 1082
Cdd:COG3206 239 EARLAALRAQlgsGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPD---VIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568924015 1083 QHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKA---QRELEEQHEVNEQLQARIKSLE 1142
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAELPELEAELrrlEREVEVARELYESLLQRLEEAR 378
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
516-1000 |
2.18e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 516 EQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEK 595
Cdd:PRK02224 254 ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEEC 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 596 MEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREE-ADRGRELEQQnlq 674
Cdd:PRK02224 334 RVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfGDAPVDLGNA--- 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 675 lqktlqqlrqdceEASKAKVASETEAmvLGQRRATVETTLRETQEENDEFRR-----RILGLEQQLKE---ARGLAEGGE 746
Cdd:PRK02224 411 -------------EDFLEELREERDE--LREREAELEATLRTARERVEEAEAlleagKCPECGQPVEGsphVETIEEDRE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 747 AVE------ARLRDKVHRLEVEKQQLEEALNAAREEEgNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQRE 820
Cdd:PRK02224 476 RVEeleaelEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 821 ALRRSKAELEEQKRLLNRTVDRLNKELEQIgDDSKLALQQLQAQMEDyKEKARKEVADAQRQAKDWaseAEKNSGGLSRL 900
Cdd:PRK02224 555 EKREAAAEAEEEAEEAREEVAELNSKLAEL-KERIESLERIRTLLAA-IADAEDEIERLREKREAL---AELNDERRERL 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 901 QDELQRLRQALQTSQAER-DTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEaELDEEKNTVELLTD 979
Cdd:PRK02224 630 AEKRERKRELEAEFDEARiEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE-ELRERREALENRVE 708
|
490 500
....*....|....*....|.
gi 568924015 980 RVNRGRDQVDQLRTELMQERS 1000
Cdd:PRK02224 709 ALEALYDEAEELESMYGDLRA 729
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
717-1075 |
2.69e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 58.43 E-value: 2.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 717 TQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREeegNLAAAKRALevrldEAQR 796
Cdd:COG3096 276 HANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASD---HLNLVQTAL-----RQQE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 797 GLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEqigdDSKLALQQLQAQMEDYKEkARKEV 876
Cdd:COG3096 348 KIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLA----DYQQALDVQQTRAIQYQQ-AVQAL 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 877 ADAQRQAKDWASEAEKNSGGLSRLQDELQR-------LRQALQTSQAER-----------------------DTAR---- 922
Cdd:COG3096 423 EKARALCGLPDLTPENAEDYLAAFRAKEQQateevleLEQKLSVADAARrqfekayelvckiageversqawQTARellr 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 923 --LDKELLAQRLQGLEQ---EAENKKRFQDDKARQLKSLEEKVSR-------LEAELDEEKNTVELLTDRVNRGRDQVDQ 990
Cdd:COG3096 503 ryRSQQALAQRLQQLRAqlaELEQRLRQQQNAERLLEEFCQRIGQqldaaeeLEELLAELEAQLEELEEQAAEAVEQRSE 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 991 LRTELMQERSARQDLEcDKISLERQNKDLKTRLASSEGfqKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERR 1070
Cdd:COG3096 583 LRQQLEQLRARIKELA-ARAPAWLAAQDALERLREQSG--EALADSQEVTAAMQQLLEREREATVERDELAARKQALESQ 659
|
....*
gi 568924015 1071 VKELS 1075
Cdd:COG3096 660 IERLS 664
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
803-1139 |
3.78e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 3.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 803 QEQQALNRALEEEGKQREalrRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKlalqqlqaQMEDYKEKARKEVADAQRQ 882
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQE---KKLEEIQNQISQNNKIISQLNEQISQLKKELT--------NSESENSEKQRELEEKQNE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 883 AKDWASEAEKNSGGLSRLQDELQRLRQALQtsQAERDTARLDKEL--LAQRLQGLEQEAENKKRFQDDKARQLKSLEEKV 960
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQ--NQEKLNQQKDEQIkkLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 961 SRLEAEL-------DEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPS 1033
Cdd:TIGR04523 450 SVKELIIknldntrESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1034 AS--------LSQLESQNQLLQERLQAEEREKTV---------LQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLR- 1095
Cdd:TIGR04523 530 ESekkekeskISDLEDELNKDDFELKKENLEKEIdeknkeieeLKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKe 609
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 568924015 1096 --VKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIK 1139
Cdd:TIGR04523 610 kkISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
543-965 |
5.33e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 5.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 543 VRELQRELEETSEETGHWQsmfqKNKEELRATKQELLQLRMEKEEMEEElgekmevlQRDLEQARASTRDTHQVEELKKE 622
Cdd:COG4717 73 LKELEEELKEAEEKEEEYA----ELQEELEELEEELEELEAELEELREE--------LEKLEKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 623 LRRTQGELKELQAEQQnQEVTGRHQNQVLEKQLAALREEADRgrELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMV 702
Cdd:COG4717 141 LAELPERLEELEERLE-ELRELEEELEELEAELAELQEELEE--LLEQLSLATEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 703 LGQRRATVETTLRETQEENDEFRRR---------------ILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLE 767
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEerlkearlllliaaaLLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 768 EALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQkRLLNRTVDRLNKEL 847
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 848 EQIGDDSKLALQQLQAQMEDYKE-KARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKE 926
Cdd:COG4717 377 AEAGVEDEEELRAALEQAEEYQElKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELA 456
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 568924015 927 LLAQRLQGLE--QEAENKKRFQDDKARQLKSLEEKVSRLEA 965
Cdd:COG4717 457 ELEAELEQLEedGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
705-1129 |
1.58e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.54 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 705 QRRATVETTLRETQEENDEFRRRILGLEQQLkEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREeegnlaaaK 784
Cdd:COG4717 95 EELEELEEELEELEAELEELREELEKLEKLL-QLLPLYQELEALEAELAELPERLEELEERLEELRELEEE--------L 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 785 RALEVRLDEAQRGLARLGQEQQALNR-ALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQA 863
Cdd:COG4717 166 EELEAELAELQEELEELLEQLSLATEeELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 864 QMEDYKEKARKEVADAQRQAKDWASEAEKNSG--------------GLSRLQDELQRLRQALQTSQAERDTARLDKELLA 929
Cdd:COG4717 246 KEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELL 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 930 QRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQdlecdk 1009
Cdd:COG4717 326 AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQE------ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1010 isLERQNKDLKTRLASSEGFQKPSA---SLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQidderqhvn 1086
Cdd:COG4717 400 --LKEELEELEEQLEELLGELEELLealDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED--------- 468
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 568924015 1087 DQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHE 1129
Cdd:COG4717 469 GELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
347-979 |
1.68e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.75 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 347 LAGQAELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRL-----QELLERRKGEVQQSSKELQNMKLLLG 421
Cdd:TIGR00618 245 LTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAplaahIKAVTQIEQQAQRIHTELQSKMRSRA 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 422 QEEGLRHGLEAQVKELQLKLKHSQSPDSgKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHD 501
Cdd:TIGR00618 325 KLLMKRAAHVKQQSSIEEQRRLLQTLHS-QEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELD 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 502 QEVEHVRLQYQRDTEQlRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKE--ELRATKQELL 579
Cdd:TIGR00618 404 ILQREQATIDTRTSAF-RDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEreQQLQTKEQIH 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 580 QLRMEKEEMEEELGEKMEVLQRDL-EQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTgRHQNQVLEKQLAAL 658
Cdd:TIGR00618 483 LQETRKKAVVLARLLELQEEPCPLcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDV-YHQLTSERKQRASL 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 659 REEADRGRELEQQNLQlqktlqqlrqdCEEASKAKVASETEAMVLgqrratvettLRETQEENDEFRRRILGLEQQLKEA 738
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQ-----------CDNRSKEDIPNLQNITVR----------LQDLTEKLSEAEDMLACEQHALLRK 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 739 RGLAEGGEAVEARLRDKVHRLEVEKQQLE-EALNAAREEEGNLAAAKRALEVR--------LDEAQRGLARLGQEQQALN 809
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQCSQELALKLTALHaLQLTLTQERVREHALSIRVLPKEllasrqlaLQKMQSEKEQLTYWKEMLA 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 810 RALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKEL----EQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAK- 884
Cdd:TIGR00618 701 QCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREdalnQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEl 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 885 -DWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTAR-LDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSR 962
Cdd:TIGR00618 781 sHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILnLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQ 860
|
650
....*....|....*..
gi 568924015 963 LEAELDEEKNTVELLTD 979
Cdd:TIGR00618 861 LAQLTQEQAKIIQLSDK 877
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
531-1155 |
2.13e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 531 ALEAERQKMSSLVRELQRELEETSEETghwqSMFQKNKEELRATKQELLQLRMEKEEMEEELgekmevlqRDLEQARAST 610
Cdd:PRK03918 197 EKEKELEEVLREINEISSELPELREEL----EKLEKEVKELEELKEEIEELEKELESLEGSK--------RKLEEKIREL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 611 RDthQVEELKK---ELRRTQGELKELQAEQQNQEVTGRHQNQVLEKqLAALREEADRGRELEQQNLQLQKTLQQLRQDCE 687
Cdd:PRK03918 265 EE--RIEELKKeieELEEKVKELKELKEKAEEYIKLSEFYEEYLDE-LREIEKRLSRLEEEINGIEERIKELEEKEERLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 688 EASKAKVASETEAMVLGQRRATVETtLRETQEENDEFRRRILG-----LEQQLKEARGLAEGGEAVEARLRDKVHRLEVE 762
Cdd:PRK03918 342 ELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRLTGltpekLEKELEELEKAKEEIEEEISKITARIGELKKE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 763 KQQLEEALNAAREEEGNLAAAKRalevRLDEAQRGlarlgqeqqalnRALEEEGKQREALRRSKAELEEQKRLLNRTVDR 842
Cdd:PRK03918 421 IKELKKAIEELKKAKGKCPVCGR----ELTEEHRK------------ELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 843 LNKELEQIGDDSKL--ALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLrQALQTSqaerdt 920
Cdd:PRK03918 485 LEKVLKKESELIKLkeLAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL-EELKKK------ 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 921 arldKELLAQRLQGLEQE-AENKKRFQDDKARQLKSLEEKVSRLEaELDEEKNTVELLTDRVNRGRDQVDQLRTELMQER 999
Cdd:PRK03918 558 ----LAELEKKLDELEEElAELLKELEELGFESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1000 SARQDLECDKISLERQNKDLKtRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELsiqid 1079
Cdd:PRK03918 633 EELAETEKRLEELRKELEELE-KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER----- 706
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568924015 1080 derqhvndqkdqltlrvkalkrqvDEAEEEIERLdslrKKAQRELEEQHEVNEQLQArikSLEKDAWRKASRSAAE 1155
Cdd:PRK03918 707 ------------------------EKAKKELEKL----EKALERVEELREKVKKYKA---LLKERALSKVGEIASE 751
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
351-1143 |
3.37e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.98 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 351 AELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRH-- 428
Cdd:pfam02463 236 EERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEek 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 429 --GLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKG----ALKEEVASHDQ 502
Cdd:pfam02463 316 lkESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKleseRLSSAAKLKEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 503 EVEHVRLQYQRDTEQLRRSMQDATqdhaALEAERQKMSSLVRELQRELEETSEEtghwQSMFQKNKEELRATKQELLQLR 582
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLED----LLKEEKKEELEILEEEEESIELKQGK----LTEEKEELEKQELKLLKDELEL 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 583 MEKEEMEEELGEKMEVLQRDLEQARAstrdthQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREEA 662
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQ------KLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENY 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 663 DRGRELEqqnlqlQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLA 742
Cdd:pfam02463 542 KVAISTA------VIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 743 EGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREAL 822
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEIL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 823 RRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRqakdwaSEAEKNSGGLSRLQD 902
Cdd:pfam02463 696 RRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEK------SRLKKEEKEEEKSEL 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 903 ELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVN 982
Cdd:pfam02463 770 SLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 983 RGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKpSASLSQLESQNQLLQERLQAEEREKTVLQS 1062
Cdd:pfam02463 850 KLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEE-KKELEEESQKLNLLEEKENEIEERIKEEAE 928
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1063 TNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLE 1142
Cdd:pfam02463 929 ILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLI 1008
|
.
gi 568924015 1143 K 1143
Cdd:pfam02463 1009 R 1009
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
381-850 |
3.97e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 3.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 381 LERQLEEKAEECHRLQ----ELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQSPDSGKESLLK 456
Cdd:COG4717 47 LLERLEKEADELFKPQgrkpELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 457 --DLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEA 534
Cdd:COG4717 127 llPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 535 ERQKMSSLVRELQRELEETSEETGHWQS--MFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRD 612
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENelEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 613 THQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKA 692
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 693 KVASETEAMvLGQRRATVETTLRETQEENDEF---RRRILGLEQQLKEARG--LAEGGEAVEARLRDKVHRLEVEKQQLE 767
Cdd:COG4717 367 ELEQEIAAL-LAEAGVEDEEELRAALEQAEEYqelKEELEELEEQLEELLGelEELLEALDEEELEEELEELEEELEELE 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 768 EALNAAREEEGNLAAAKRALevrldEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEE-QKRLLNRTVDRLNKE 846
Cdd:COG4717 446 EELEELREELAELEAELEQL-----EEDGELAELLQELEELKAELRELAEEWAALKLALELLEEaREEYREERLPPVLER 520
|
....
gi 568924015 847 LEQI 850
Cdd:COG4717 521 ASEY 524
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
798-1127 |
4.62e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 4.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 798 LARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQigddSKLALQQLQAQMEDYKEkARKEVA 877
Cdd:TIGR04523 147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK----LELLLSNLKKKIQKNKS-LESQIS 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 878 DAQRQAKDWASEAEKnsgglsrLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLE 957
Cdd:TIGR04523 222 ELKKQNNQLKDNIEK-------KQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLK 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 958 EKVSRLE------------AELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLAS 1025
Cdd:TIGR04523 295 SEISDLNnqkeqdwnkelkSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEK 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1026 -SEGFQKPSASLSQLESQNQLLQERLQAEEREKT-------VLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ---LTL 1094
Cdd:TIGR04523 375 lKKENQSYKQEIKNLESQINDLESKIQNQEKLNQqkdeqikKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQdsvKEL 454
|
330 340 350
....*....|....*....|....*....|...
gi 568924015 1095 RVKALKRQVDEAEEEIERLDSLRKKAQRELEEQ 1127
Cdd:TIGR04523 455 IIKNLDNTRESLETQLKVLSRSINKIKQNLEQK 487
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
351-832 |
7.22e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 7.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 351 AELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQEL------LERRKGEVQQSSKELQNMKLLLGQEE 424
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELkekaeeYIKLSEFYEEYLDELREIEKRLSRLE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 425 GLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEV 504
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 505 EHVRLQYQRDTEQLRRSMQDATQDHAA---LEAERQKMSSLVRELQRE-----LEETSEETGHWQSMFQKNKEELRATKQ 576
Cdd:PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAieeLKKAKGKCPVCGRELTEEhrkelLEEYTAELKRIEKELKEIEEKERKLRK 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 577 ELLQLRMEKEEMEEELGEKMEVLQ-RDLEQARAS------TRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQ 649
Cdd:PRK03918 481 ELRELEKVLKKESELIKLKELAEQlKELEEKLKKynleelEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 650 VLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVA---SETEAMVLGQRRATVETTLRETQEENDEFRR 726
Cdd:PRK03918 561 LEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLElkdAEKELEREEKELKKLEEELDKAFEELAETEK 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 727 RILGLEQQLKEARglAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEaqrgLARLGQEQQ 806
Cdd:PRK03918 641 RLEELRKELEELE--KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE----REKAKKELE 714
|
490 500
....*....|....*....|....*.
gi 568924015 807 ALNRALEEEGKQREALRRSKAELEEQ 832
Cdd:PRK03918 715 KLEKALERVEELREKVKKYKALLKER 740
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
609-974 |
1.05e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 609 STRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEE 688
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 689 ASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRIL--GLEQQLKEARGLAEGGEAVEARLRD---KVHRLEVEK 763
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsRIPEIQAELSKLEEEVSRIEARLREieqKLNRLTLEK 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 764 QQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRL 843
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 844 NKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADaqrqakdwaSEAEKNSGGLSRLQDELQRLRQALQTsqaerdtarl 923
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED---------EEIPEEELSLEDVQAELQRVEEEIRA---------- 969
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 568924015 924 dkeLLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLE--AELDEEKNTV 974
Cdd:TIGR02169 970 ---LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILEriEEYEKKKREV 1019
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
433-1075 |
1.11e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.30 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 433 QVKELQLKLKHSQSPDSGKESLLKDLLDTRELleelleGKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQ 512
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQE------TSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELE 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 513 RDTEQLRRsMQDATQDHAALEAE-----RQKMSSLVRELQRELEETSEETGHWQSMFQKNKEELratKQELLQLRMEKEE 587
Cdd:pfam12128 326 ALEDQHGA-FLDADIETAAADQEqlpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQN---NRDIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 588 MEEELGEKMEVLQRDLEQARASTRDTH-----QVEELKKELRRTQGELKELQAEQQ--NQEVTGRHQNQVL-----EKQL 655
Cdd:pfam12128 402 IREARDRQLAVAEDDLQALESELREQLeagklEFNEEEYRLKSRLGELKLRLNQATatPELLLQLENFDERierarEEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 656 AALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQL 735
Cdd:pfam12128 482 AANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLH 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 736 K-----EARGLAEGGEAVEARLRDKVHRLEV------------EKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGL 798
Cdd:pfam12128 562 RtdldpEVWDGSVGGELNLYGVKLDLKRIDVpewaaseeelreRLDKAEEALQSAREKQAAAEEQLVQANGELEKASREE 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 799 --ARLGQEQQALNRALEEEGKQREALRRSKAeLEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDY---KEKAR 873
Cdd:pfam12128 642 tfARTALKNARLDLRRLFDEKQSEKDKKNKA-LAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREArteKQAYW 720
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 874 KEVA---DAQRQAKDWASEAEKnsgglSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKA 950
Cdd:pfam12128 721 QVVEgalDAQLALLKAAIAARR-----SGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVL 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 951 RQLKSLEEKVS----RLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASS 1026
Cdd:pfam12128 796 RYFDWYQETWLqrrpRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATL 875
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 568924015 1027 EGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELS 1075
Cdd:pfam12128 876 KEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHS 924
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
736-1157 |
1.14e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.04 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 736 KEARGLAEGGEAVEARLRDKVHRLEVEKQQLEE---ALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQA----- 807
Cdd:PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEmarELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYqadle 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 808 -LNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLnkeleqigddsklalqqlQAQMEDYKEK--ARKEVADAQRQAK 884
Cdd:PRK04863 359 eLEERLEEQNEVVEEADEQQEENEARAEAAEEEVDEL------------------KSQLADYQQAldVQQTRAIQYQQAV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 885 DWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDkelLAQRLQgleqEAENKKRfQDDKARQL-KSLEEKVSRL 963
Cdd:PRK04863 421 QALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLS---LEQKLS----VAQAAHS-QFEQAYQLvRKIAGEVSRS 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 964 EA-----ELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQdlecdkiSLERQNKDLKTRLASSEGFQkpsaslsQ 1038
Cdd:PRK04863 493 EAwdvarELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAER-------LLAEFCKRLGKNLDDEDELE-------Q 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1039 LESQNQLLQERLQAEEREKTVLQSTnrkLERRVKELSIQIDDERQHVnDQKDQLTLRVKALKRQVDEAEEEIERLDSLRK 1118
Cdd:PRK04863 559 LQEELEARLESLSESVSEARERRMA---LRQQLEQLQARIQRLAARA-PAWLAAQDALARLREQSGEEFEDSQDVTEYMQ 634
|
410 420 430
....*....|....*....|....*....|....*....
gi 568924015 1119 KAQRELEEQHEVNEQLQARIKSLEKDAWRKASRSAAESA 1157
Cdd:PRK04863 635 QLLERERELTVERDELAARKQALDEEIERLSQPGGSEDP 673
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
605-834 |
2.07e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 605 QARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQ 684
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 685 DcEEASKAKVASETEAMVLGQRRATVETTLRetQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQ 764
Cdd:COG4942 98 E-LEAQKEELAELLRALYRLGRQPPLALLLS--PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 765 QLEEALNAAREEegnlaaaKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKR 834
Cdd:COG4942 175 ELEALLAELEEE-------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
565-1143 |
2.69e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 565 QKNKEELRATKQELLQLRMEKEEMEEELGekmevlqrdlEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTG 644
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIK----------EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 645 RHQNQvLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEasKAKVASETEAmvlgqrratVETTLRETQEENDEF 724
Cdd:PRK03918 238 EEIEE-LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE--KVKELKELKE---------KAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 725 RRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVrLDEAQRGLARLGqe 804
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK-KEELERLKKRLT-- 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 805 qqalNRALEEEGKQREALRRSKAELEEQKRLLNRTVdrlnKELEQIGDDSKLALQQLQaqmedyKEKARKEVADAQRQAK 884
Cdd:PRK03918 383 ----GLTPEKLEKELEELEKAKEEIEEEISKITARI----GELKKEIKELKKAIEELK------KAKGKCPVCGRELTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 885 DWASEAEKNSGGLSRLQDELQRLRQALqtSQAERDTARLDKELLAQR-----LQGLEQEAENKKRFQDDKARQLKSLEEK 959
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKE--RKLRKELRELEKVLKKESeliklKELAEQLKELEEKLKKYNLEELEKKAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 960 VSRLEAELDEEKNTVELLTDRVNRGRDqvdqLRTELMQERSARQDLECDKISLERQ--------NKDLKTRLASSEGFQK 1031
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKEleelgfesVEELEERLKELEPFYN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1032 PSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQK-DQLTLRVKALKRQVDEAEEEI 1110
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAEL 682
|
570 580 590
....*....|....*....|....*....|....*.
gi 568924015 1111 ERLDSLR---KKAQRELEEQHEVNEQLQARIKSLEK 1143
Cdd:PRK03918 683 EELEKRReeiKKTLEKLKEELEEREKAKKELEKLEK 718
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-938 |
2.95e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 2.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 473 QRVEEQLRLRERELTALKgALKEEVASHDQEVEHVRLQYQRDTEQLRRsmQDATQDHAALEAERQKMSSLVRELQRELEE 552
Cdd:COG4717 74 KELEEELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREELEK--LEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 553 TSEETGHWQSMfqknKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDthQVEELKKELRRTQGELKE 632
Cdd:COG4717 151 LEERLEELREL----EEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ--RLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 633 LQAEQQNQEVTGRHQnqvlekqlaalrEEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVET 712
Cdd:COG4717 225 LEEELEQLENELEAA------------ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 713 TLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGnlAAAKRALEVRLD 792
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 793 EAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQkrLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEK- 871
Cdd:COG4717 371 EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ--LEELLGELEELLEALDEEELEEELEELEEELEELEEEl 448
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568924015 872 --ARKEVADAQRQAKDWASEAEknsggLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQE 938
Cdd:COG4717 449 eeLREELAELEAELEQLEEDGE-----LAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
818-1127 |
3.44e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.45 E-value: 3.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 818 QREALRRSKAELEEQKRLlnrtVDRLNKELEQIG--DDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSG 895
Cdd:PRK11281 44 QLDALNKQKLLEAEDKLV----QQDLEQTLALLDkiDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLS 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 896 GLS--RLQDELQRLRQALQTSQAERDTARldkellaqrlqgleqeaenkkrfqddkaRQLKSLEEKVSRLEAELDEEKNT 973
Cdd:PRK11281 120 TLSlrQLESRLAQTLDQLQNAQNDLAEYN----------------------------SQLVSLQTQPERAQAALYANSQR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 974 VELLTDRVNRGRDQVDQLRTELMQERSARQDLecdkisLERQNKDLKTRLASSEGFQK--------PSASLSQLESQNQL 1045
Cdd:PRK11281 172 LQQIRNLLKGGKVGGKALRPSQRVLLQAEQAL------LNAQNDLQRKSLEGNTQLQDllqkqrdyLTARIQRLEHQLQL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1046 LQERLQA---EEREKTVLQSTNRKLERR-------VKELSI--QIDDERQHVNDQKDQLT---LRVKalkrqvdeaeeei 1110
Cdd:PRK11281 246 LQEAINSkrlTLSEKTVQEAQSQDEAARiqanplvAQELEInlQLSQRLLKATEKLNTLTqqnLRVK------------- 312
|
330
....*....|....*..
gi 568924015 1111 ERLDSLrKKAQRELEEQ 1127
Cdd:PRK11281 313 NWLDRL-TQSERNIKEQ 328
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
655-923 |
5.30e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 5.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 655 LAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQ 734
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 735 LKEARGlaeggeavearlrdkvhRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEE 814
Cdd:COG4942 92 IAELRA-----------------ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 815 EGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQigddsklaLQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNS 894
Cdd:COG4942 155 LRADLAELAALRAELEAERAELEALLAELEEERAA--------LEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250 260
....*....|....*....|....*....
gi 568924015 895 GGLSRLQDELQRLRQALQTSQAERDTARL 923
Cdd:COG4942 227 ALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1051-1167 |
5.90e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.63 E-value: 5.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1051 QAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ---LTLRVKALKRQVDE---AEEEIERLDSLRKKAQREL 1124
Cdd:COG2433 402 EHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierLERELSEARSEERReirKDREISRLDREIERLEREL 481
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 568924015 1125 EEQHEVNEQLQARIKSLeKDAWRKASRSAAESALKQEGLSSDE 1167
Cdd:COG2433 482 EEERERIEELKRKLERL-KELWKLEHSGELVPVKVVEKFTKEA 523
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
857-1115 |
5.91e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 5.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 857 ALQQLQAQMEDYKEkARKEVADAQRQAKDWAseaeknsgGLSRLQDELQRLRQALQTSQAERDTARLDKEllAQRLQGLE 936
Cdd:COG4913 226 AADALVEHFDDLER-AHEALEDAREQIELLE--------PIRELAERYAAARERLAELEYLRAALRLWFA--QRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 937 QEAENkkrfqddkarqlksLEEKVSRLEAELDEekntvelLTDRVNRGRDQVDQLRTELMQerSARQDLEcdkiSLERQN 1016
Cdd:COG4913 295 AELEE--------------LRAELARLEAELER-------LEARLDALREELDELEAQIRG--NGGDRLE----QLEREI 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1017 KDLKTRLASSEgfqkpsASLSQLESQNQLLQERLQAEEREKTVLQstnrkleRRVKELSIQIDDERQHVNDQKDQLTLRV 1096
Cdd:COG4913 348 ERLERELEERE------RRRARLEALLAALGLPLPASAEEFAALR-------AEAAALLEALEEELEALEEALAEAEAAL 414
|
250
....*....|....*....
gi 568924015 1097 KALKRQVDEAEEEIERLDS 1115
Cdd:COG4913 415 RDLRRELRELEAEIASLER 433
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
716-1149 |
6.57e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 6.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 716 ETQEENDEFRRRILGLEQQLKEARGLAEggeaVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRAL------EV 789
Cdd:PRK03918 142 ESDESREKVVRQILGLDDYENAYKNLGE----VIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIneisseLP 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 790 RLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKlALQQLQAQMEDYK 869
Cdd:PRK03918 218 ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK-ELKELKEKAEEYI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 870 E--KARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQD 947
Cdd:PRK03918 297 KlsEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 948 DKARQLKSLEEKVSRLEAELDEEKNTVEL----LTDRVNRGRDQVDQLRTELMQERSARQDLE-CDKISLERQNKDLKTR 1022
Cdd:PRK03918 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEeiskITARIGELKKEIKELKKAIEELKKAKGKCPvCGRELTEEHRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1023 LassegfqkpSASLSQLESQNQLLQERLqaeerektvlqstnRKLERRVKELSIQIDDERQhvndqkdqlTLRVKALKRQ 1102
Cdd:PRK03918 457 Y---------TAELKRIEKELKEIEEKE--------------RKLRKELRELEKVLKKESE---------LIKLKELAEQ 504
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568924015 1103 VDEAEEEIERLDSLR-KKAQRELEEQHEVNEQLQARIKSLEKDAWRKA 1149
Cdd:PRK03918 505 LKELEEKLKKYNLEElEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
800-943 |
7.57e-06 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 50.14 E-value: 7.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 800 RLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIgddsKLALQQLQAQMEDYKEKARKEVADA 879
Cdd:COG1193 494 RLGLPEEIIERARELLGEESIDVEKLIEELERERRELEEEREEAERLREEL----EKLREELEEKLEELEEEKEEILEKA 569
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568924015 880 QRQAKDWASEAEKnsgglsrlqdELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKK 943
Cdd:COG1193 570 REEAEEILREARK----------EAEELIRELREAQAEEEELKEARKKLEELKQELEEKLEKPK 623
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
766-1162 |
1.00e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.51 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 766 LEEALNAAREEEGNLAAAKRA--LEVRLDEAQRGLARLGQEQQALNRALEEEgkqREALRRSKAELEEQKRLLNRTVDRL 843
Cdd:pfam07888 9 LEEESHGEEGGTDMLLVVPRAelLQNRLEECLQERAELLQAQEAANRQREKE---KERYKRDREQWERQRRELESRVAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 844 NKELEQIGDD-SKLALQQLQAQMEDYKEKARKEVADAQRQA------------KDWASEAEKNSGGLSRLQDELQRLRQA 910
Cdd:pfam07888 86 KEELRQSREKhEELEEKYKELSASSEELSEEKDALLAQRAAhearireleediKTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 911 LQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRL----------EAELDEEKNTVELLTDR 980
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLtqklttahrkEAENEALLEELRSLQER 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 981 VNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASsegfqkpsASLSQLESQNQLLQER---LQAEEREK 1057
Cdd:pfam07888 246 LNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLAD--------ASLALREGRARWAQERetlQQSAEADK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1058 TVLQSTNRKLERRVKELSiqidDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQAR 1137
Cdd:pfam07888 318 DRIEKLSAELQRLEERLQ----EERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEY 393
|
410 420
....*....|....*....|....*
gi 568924015 1138 IKSLEKDAWRKASRSAAESALKQEG 1162
Cdd:pfam07888 394 IRQLEQRLETVADAKWSEAALTSTE 418
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
565-925 |
1.19e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 565 QKNKEELRATKQELLQLRmekeemeeelgekmevlqRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTG 644
Cdd:COG4913 606 FDNRAKLAALEAELAELE------------------EELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 645 RHQNQvLEKQLAALREEADRGRELEQQNLQLQKTLqqlrqdcEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEF 724
Cdd:COG4913 668 REIAE-LEAELERLDASSDDLAALEEQLEELEAEL-------EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 725 RRRILGLEQQLKEARGLAEGGEAVEARLRDkvhRLEVEKQQLEEALNAAREE-EGNLAAAKRALEVRLDEAQRGLARLGq 803
Cdd:COG4913 740 EDLARLELRALLEERFAAALGDAVERELRE---NLEERIDALRARLNRAEEElERAMRAFNREWPAETADLDADLESLP- 815
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 804 EQQALNRALEEEG------KQREALRRS--------KAELEEQKRLLNRTVDRLNKELEQI--GDDSKLALqqlqaqmeD 867
Cdd:COG4913 816 EYLALLDRLEEDGlpeyeeRFKELLNENsiefvadlLSKLRRAIREIKERIDPLNDSLKRIpfGPGRYLRL--------E 887
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 568924015 868 YKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQ-DELQRLRQALQTSQAERDTARLDK 925
Cdd:COG4913 888 ARPRPDPEVREFRQELRAVTSGASLFDEELSEARfAALKRLIERLRSEEEESDRRWRAR 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
863-1152 |
1.58e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 863 AQMEDYKEKARKEVAdaqrqakdwasEAEKNSGGLSRLQDELqrlRQALQTSQAERDTARLDKELLAQRlqgleQEAENK 942
Cdd:TIGR02169 166 AEFDRKKEKALEELE-----------EVEENIERLDLIIDEK---RQQLERLRREREKAERYQALLKEK-----REYEGY 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 943 KRFQDDKA--RQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQdlecdkISLERQNKDLK 1020
Cdd:TIGR02169 227 ELLKEKEAleRQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ------LRVKEKIGELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1021 TRLASSEGfqkpsaSLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIqidderqhvndQKDQLTLRVKALK 1100
Cdd:TIGR02169 301 AEIASLER------SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK-----------RRDKLTEEYAELK 363
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568924015 1101 RQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDAWRKASRS 1152
Cdd:TIGR02169 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
822-1144 |
1.92e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 822 LRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKlALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQ 901
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYN-DLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 902 DELQRLRQalqtsqaerdtarLDKEL--LAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTD 979
Cdd:TIGR04523 208 KKIQKNKS-------------LESQIseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 980 RVNRGRDQVDQLRTELMQERSARQDLECDKIslERQNKDLKTRLASSEgfQKPSASLSQLESQNQL---LQERLQAEERE 1056
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSEISDLNNQKE--QDWNKELKSELKNQE--KKLEEIQNQISQNNKIisqLNEQISQLKKE 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1057 KTVLQSTNRKLERRVKELSIQIDD---ERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRE---LEEQHE- 1129
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKlkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEkelLEKEIEr 430
|
330
....*....|....*...
gi 568924015 1130 ---VNEQLQARIKSLEKD 1144
Cdd:TIGR04523 431 lkeTIIKNNSEIKDLTNQ 448
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
703-927 |
1.94e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 703 LGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARgLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAA 782
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFR-QKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 783 AKRALEVRLDEAQR-----GLARLGQEQQALNRALEEE----GKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDD 853
Cdd:COG3206 245 LRAQLGSGPDALPEllqspVIQQLRAQLAELEAELAELsaryTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEA 324
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568924015 854 SKLALQQLQAQMEDYKEKArKEVADAQRQakdwaseaeknsggLSRLQDELQRLRQALQTSQAERDTARLDKEL 927
Cdd:COG3206 325 LQAREASLQAQLAQLEARL-AELPELEAE--------------LRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
403-1148 |
1.97e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 403 KGEVQQSSKELQNMKLLLGQEEGLRHG----LEAQVKELQLKLKHSQSPDSGKESLLKdLLDTRELLEELLEGKQRVEEQ 478
Cdd:TIGR00618 193 HGKAELLTLRSQLLTLCTPCMPDTYHErkqvLEKELKHLREALQQTQQSHAYLTQKRE-AQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 479 LRLRERELTALKGAL-----KEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQ------DHAALEAERQKMSSLVRELQ 547
Cdd:TIGR00618 272 LRAQEAVLEETQERInrarkAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKllmkraAHVKQQSSIEEQRRLLQTLH 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 548 RELEETSEETGHwQSMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDleqarasTRDTHQVEELKKELRRTQ 627
Cdd:TIGR00618 352 SQEIHIRDAHEV-ATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDIL-------QREQATIDTRTSAFRDLQ 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 628 GELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKvaseteamvlgqrr 707
Cdd:TIGR00618 424 GQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKK-------------- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 708 ATVETTLRETQEENDEFRRRILGLEQQLKEArGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEegnlaaaKRAL 787
Cdd:TIGR00618 490 AVVLARLLELQEEPCPLCGSCIHPNPARQDI-DNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ-------RASL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 788 EVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMED 867
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQEL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 868 YKEKARKEvadaqRQAKDWASEAEKNSGGLSRLQDElqrlrQALQTSQAERDTARLDKELLAQRLQGLEQEAEnkkrfqd 947
Cdd:TIGR00618 642 ALKLTALH-----ALQLTLTQERVREHALSIRVLPK-----ELLASRQLALQKMQSEKEQLTYWKEMLAQCQT------- 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 948 dkarQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQErsarQDLECDKISLERQNKDLKTRLASSE 1027
Cdd:TIGR00618 705 ----LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ----ARTVLKARTEAHFNNNEEVTAALQT 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1028 GfQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAE 1107
Cdd:TIGR00618 777 G-AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 568924015 1108 EEIERLDSLRKKaQRELEEQHEVNEQLQARIKSLEKDAWRK 1148
Cdd:TIGR00618 856 ECSKQLAQLTQE-QAKIIQLSDKLNGINQIKIQFDGDALIK 895
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
477-1119 |
2.51e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 477 EQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEE 556
Cdd:pfam12128 251 NTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 557 TGhwqsMFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQArASTRDTHQVEELKKELRRTQGELKELQAE 636
Cdd:pfam12128 331 HG----AFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAK-YNRRRSKIKEQNNRDIAGIKDKLAKIREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 637 QQNQEVTGRHQNQVLEKQL-----AALREEADRGRELEQQNLQLQKTLQQLRQDCEE-ASKAKVASETEAM--VLGQRRA 708
Cdd:pfam12128 406 RDRQLAVAEDDLQALESELreqleAGKLEFNEEEYRLKSRLGELKLRLNQATATPELlLQLENFDERIERAreEQEAANA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 709 TVE------TTLRETQEENDEFRRRILGLEQQLKEArgLAEGGEAVEARLRDKVHRLEVEKQQLEEALN--AARE----- 775
Cdd:pfam12128 486 EVErlqselRQARKRRDQASEALRQASRRLEERQSA--LDELELQLFPQAGTLLHFLRKEAPDWEQSIGkvISPEllhrt 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 776 ------EEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELE- 848
Cdd:pfam12128 564 dldpevWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETf 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 849 --QIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSR-LQDELQRLRQALQTSQAERDTARLD- 924
Cdd:pfam12128 644 arTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKkHQAWLEEQKEQKREARTEKQAYWQVv 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 925 ----KELLAQRLQGLEQEAENKKRFQD----DKARQLKSL---EEKVSRLEAELDEEKNTVElltdRVNRGRDQVDQLRt 993
Cdd:pfam12128 724 egalDAQLALLKAAIAARRSGAKAELKaletWYKRDLASLgvdPDVIAKLKREIRTLERKIE----RIAVRRQEVLRYF- 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 994 ELMQER--SARQDLECDKISLERQNKDLKTRLASSEgfQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLER-R 1070
Cdd:pfam12128 799 DWYQETwlQRRPRLATQLSNIERAISELQQQLARLI--ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATlK 876
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 568924015 1071 VKELSIQIDDERQHVNDQKDQLTLRVKALKRQVdeaEEEIERLDSLRKK 1119
Cdd:pfam12128 877 EDANSEQAQGSIGERLAQLEDLKLKRDYLSESV---KKYVEHFKNVIAD 922
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
852-978 |
2.58e-05 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 47.74 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 852 DDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSG--GLSRLQDELQRLRQALQ---TSQAERDTARLDKE 926
Cdd:COG1566 79 TDLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAAEAQLAAAqaQLDLAQRELERYQALYKkgaVSQQELDEARAALD 158
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568924015 927 LLAQRLQGLEQEAENKKRfQDDKARQLKSLEEKVSRLEAELDEEKNTVELLT 978
Cdd:COG1566 159 AAQAQLEAAQAQLAQAQA-GLREEEELAAAQAQVAQAEAALAQAELNLARTT 209
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
786-1157 |
2.90e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 47.75 E-value: 2.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 786 ALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTV---DRLNKELEQIGDDSKLALQQLQ 862
Cdd:pfam19220 7 LLRVRLGEMADRLEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERaayGKLRRELAGLTRRLSAAEGELE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 863 A-------------QMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQtsQAERDTARLDKEL-- 927
Cdd:pfam19220 87 ElvarlakleaalrEAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEAQ--AAEKALQRAEGELat 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 928 LAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEkntvelltdrvnrgRDQVDQLRTELMQERSARQDLEC 1007
Cdd:pfam19220 165 ARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDAT--------------RARLRALEGQLAAEQAERERAEA 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1008 dkiSLERQNKDLKTRLASSEgfQKPSASLSQLESQNQLLQE-RLQAEEREKTVlqstnRKLERRVKELSIQIDD-ERQHV 1085
Cdd:pfam19220 231 ---QLEEAVEAHRAERASLR--MKLEALTARAAATEQLLAEaRNQLRDRDEAI-----RAAERRLKEASIERDTlERRLA 300
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568924015 1086 NDQKD--QLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDawRKASRSAAESA 1157
Cdd:pfam19220 301 GLEADleRRTQQFQEMQRARAELEERAEMLTKALAAKDAALERAEERIASLSDRIAELTKR--FEVERAALEQA 372
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
338-580 |
3.76e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 338 MVSPASTKALAGQAELTRKMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKGEVQQSSKELQNmk 417
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 418 lLLGQEEGLRHGLEAQVKELQLKLKHSQSpdSGKESLLKDLLDTRELLEELLEGkQRVEEQLRLRERELTALKGALkeev 497
Cdd:COG4942 88 -LEKEIAELRAELEAQKEELAELLRALYR--LGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARREQAEELRADL---- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 498 ashdQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETghwqSMFQKNKEELRATKQE 577
Cdd:COG4942 160 ----AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL----AELQQEAEELEALIAR 231
|
...
gi 568924015 578 LLQ 580
Cdd:COG4942 232 LEA 234
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
758-980 |
4.80e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 758 RLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDE--AQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRL 835
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 836 LNRTVDRLNKELEQIGDDSklALQQLQAQMEDykekARKEVADAQRQAKDwaseaekNSGGLSRLQDELQRLRQALQT-S 914
Cdd:COG3206 245 LRAQLGSGPDALPELLQSP--VIQQLRAQLAE----LEAELAELSARYTP-------NHPDVIALRAQIAALRAQLQQeA 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568924015 915 QAERDTARLDKELLAQRLQGLEQEAENkkrfQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDR 980
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQ----LEARLAELPELEAELRRLEREVEVARELYESLLQR 373
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
472-1137 |
6.44e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 6.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 472 KQRVEEQLRLRERELTALKGALkeevASHDQ--EVEHVR-LQYQRDTEQLRR----------SMQDATQDHAALEAERQK 538
Cdd:COG3096 377 LAEAEARLEAAEEEVDSLKSQL----ADYQQalDVQQTRaIQYQQAVQALEKaralcglpdlTPENAEDYLAAFRAKEQQ 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 539 MSSLVRELQRELEETSE-ETGHWQSM---------------FQKNKE------ELRATKQELLQLRMEKEEMEEELGEKM 596
Cdd:COG3096 453 ATEEVLELEQKLSVADAaRRQFEKAYelvckiageversqaWQTAREllrryrSQQALAQRLQQLRAQLAELEQRLRQQQ 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 597 EV--LQRDLEQARASTRDT-HQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQVLEKQLAALREEADRGRELEQQNL 673
Cdd:COG3096 533 NAerLLEEFCQRIGQQLDAaEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALE 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 674 QLQKTLQQLRQDCEEASKAK---VASETEAMV----LGQRRATVETTLRETQEENDEFRRRILGLEQQLKeARGLAEGGE 746
Cdd:COG3096 613 RLREQSGEALADSQEVTAAMqqlLEREREATVerdeLAARKQALESQIERLSQPGGAEDPRLLALAERLG-GVLLSEIYD 691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 747 AV--------EARLRDKVHRLEVEKQQLEEALNAAREE--------EGNLAAAKRALEVRLDEAQRGLARLGQEQ----- 805
Cdd:COG3096 692 DVtledapyfSALYGPARHAIVVPDLSAVKEQLAGLEDcpedlyliEGDPDSFDDSVFDAEELEDAVVVKLSDRQwrysr 771
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 806 ----QALNRALEEegKQREALRRSKAELEEQKRLLNRTVDRLNKeLEQigDDSKLALQQLQAQMEDYKEKARKEVADAQR 881
Cdd:COG3096 772 fpevPLFGRAARE--KRLEELRAERDELAEQYAKASFDVQKLQR-LHQ--AFSQFVGGHLAVAFAPDPEAELAALRQRRS 846
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 882 QAKDwaseaeknsgGLSRLQDELQRLRQALQTSQAERDTAR--------LDKELLAQRLQGLEQE---AENKKRFQDDKA 950
Cdd:COG3096 847 ELER----------ELAQHRAQEQQLRQQLDQLKEQLQLLNkllpqanlLADETLADRLEELREEldaAQEAQAFIQQHG 916
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 951 RQLKSLEEKVSRLE---AELDEEKNTVELLTDRVNRGRDQVDQLrTELMQERS--ARQDLECDKISLERQNKDLKTRLAS 1025
Cdd:COG3096 917 KALAQLEPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIFAL-SEVVQRRPhfSYEDAVGLLGENSDLNEKLRARLEQ 995
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1026 SEGFQKPS-----ASLSQLESQNQLLQErLQAEEREKtvlQSTNRKLERRVKELSIQIDDE--------RQHVNDQKDQL 1092
Cdd:COG3096 996 AEEARREAreqlrQAQAQYSQYNQVLAS-LKSSRDAK---QQTLQELEQELEELGVQADAEaeerarirRDELHEELSQN 1071
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 568924015 1093 TLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQAR 1137
Cdd:COG3096 1072 RSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAG 1116
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
493-1173 |
7.87e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 493 LKEEVASHDQEVE--HVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETSEETGHWQSMFQKNKEE 570
Cdd:TIGR00606 191 LRQVRQTQGQKVQehQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 571 LRA---TKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTrdthqVEELKKELRRTQGELKELQAEQQ--NQEVTGR 645
Cdd:TIGR00606 271 IKAlksRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRT-----VREKERELVDCQRELEKLNKERRllNQEKTEL 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 646 HQNQVLEKQLAALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVA-------SETEAMVLGQRRATVETTLRETQ 718
Cdd:TIGR00606 346 LVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFhtlvierQEDEAKTAAQLCADLQSKERLKQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 719 EENDEFRRRILG-----------LEQQLKEARGLAEGGEAVEARLRDKvhrLEVEKQQLEEALNAAREEEGNLAAAKRAL 787
Cdd:TIGR00606 426 EQADEIRDEKKGlgrtielkkeiLEKKQEELKFVIKELQQLEGSSDRI---LELDQELRKAERELSKAEKNSLTETLKKE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 788 EVRLDEAQ----RGLARLGQEQQALNRALEEEgKQREALRRSKAELEEQKRLLN-RTVDRLNKEL-----EQIGDDSKLA 857
Cdd:TIGR00606 503 VKSLQNEKadldRKLRKLDQEMEQLNHHTTTR-TQMEMLTKDKMDKDEQIRKIKsRHSDELTSLLgyfpnKKQLEDWLHS 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 858 LQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQD-------------ELQRLRQALQTSQAERDTARLD 924
Cdd:TIGR00606 582 KSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDklfdvcgsqdeesDLERLKEEIEKSSKQRAMLAGA 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 925 KELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQD 1004
Cdd:TIGR00606 662 TAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1005 LECDKISLERQNKDLKTRLASSEgfqkpsaslSQLESQNQLLqERLQAEEREKTVLQSTNRKLERRVKELS-IQIDDERQ 1083
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLK---------NDIEEQETLL-GTIMPEEESAKVCLTDVTIMERFQMELKdVERKIAQQ 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1084 HVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDAWRKASRSAAESALKQEGL 1163
Cdd:TIGR00606 812 AAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLV 891
|
730
....*....|
gi 568924015 1164 SSDEEFDNVY 1173
Cdd:TIGR00606 892 ELSTEVQSLI 901
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
707-1018 |
7.87e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.87 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 707 RATVETTLRETQEENDEFRRRILG----LEQQLKEARG-LAEGGEAVEARLRDKVHRLEVEKQQLE-EALNAAREEEGNL 780
Cdd:COG5185 248 LAQTSDKLEKLVEQNTDLRLEKLGenaeSSKRLNENANnLIKQFENTKEKIAEYTKSIDIKKATESlEEQLAAAEAEQEL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 781 AAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRsKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQ 860
Cdd:COG5185 328 EESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVE-LSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 861 LQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERdtarldkelLAQRLQGLEQEAE 940
Cdd:COG5185 407 ILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSR---------LEEAYDEINRSVR 477
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568924015 941 NKKRfqddkarqlkSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKD 1018
Cdd:COG5185 478 SKKE----------DLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALENLI 545
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
744-1143 |
8.33e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 8.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 744 GGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEegkQREALR 823
Cdd:pfam15921 72 GKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQED---LRNQLQ 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 824 RSKAELEEQKRLLNRTVDRLNKELEQIGD---DSKLALQQLQAQMEDYKEKARKEVADAQRQAK-DWASEAEKNSGGLSR 899
Cdd:pfam15921 149 NTVHELEAAKCLKEDMLEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 900 LQDELQRLRQALQTSQAERDTARLDK----ELLAQ----RLQGLEQEAENKKRFQDDKARQLKSLEEKV-SRLEAELDEE 970
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKSESqnkiELLLQqhqdRIEQLISEHEVEITGLTEKASSARSQANSIqSQLEIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 971 KNTVELLTDRVNRGRDQVDQLRTELmqeRSARQDLECDKISLERQ----NKDLKTRLASSEGFQKPSASLsqlESQNQLL 1046
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSEL---REAKRMYEDKIEELEKQlvlaNSELTEARTERDQFSQESGNL---DDQLQKL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1047 QERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEE 1126
Cdd:pfam15921 383 LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEK 462
|
410
....*....|....*..
gi 568924015 1127 QHEVNEQLQARIKSLEK 1143
Cdd:pfam15921 463 VSSLTAQLESTKEMLRK 479
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
808-1121 |
9.48e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 9.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 808 LNRALEEEGKQREALRRSKAELEEQKRLLNR-TVDRLNK----ELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQ 882
Cdd:COG3206 96 LERVVDKLNLDEDPLGEEASREAAIERLRKNlTVEPVKGsnviEISYTSPDPELAAAVANALAEAYLEQNLELRREEARK 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 883 AKDWaseaeknsgglsrLQDELQRLRQALQTSQAERDTARLDKELLAqrlqgLEQEAenkkrfqDDKARQLKSLEEKVSR 962
Cdd:COG3206 176 ALEF-------------LEEQLPELRKELEEAEAALEEFRQKNGLVD-----LSEEA-------KLLLQQLSELESQLAE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 963 LEAELDEEKNTVELLTDRVNRGRDQVDQLrtelmQERSARQDLECDKISLERQNKDLKTRlassegFQKPSASLSQLESQ 1042
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAELAELSAR------YTPNHPDVIALRAQ 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1043 NQLLQERLQAEEREKTV-LQSTNRKLERRVKELSIQIDDERQHVNDQKdQLTLRVKALKRQVDEAEEEIERLDSLRKKAQ 1121
Cdd:COG3206 300 IAALRAQLQQEAQRILAsLEAELEALQAREASLQAQLAQLEARLAELP-ELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
873-1161 |
1.17e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 873 RKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERdtARLDKE---LLAQRLQGLEQEAENKKRFQDDK 949
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQ--AEMDRQaaiYAEQERMAMERERELERIRQEER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 950 ARQLKSLEEKVSRLEAELDEEKNTVELLTDRVN-RGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKT------- 1021
Cdd:pfam17380 359 KRELERIRQEEIAMEISRMRELERLQMERQQKNeRVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEarqrevr 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1022 RLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKE------LSIQIDDERQHVNDQKDQLTLR 1095
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEeqrrkiLEKELEERKQAMIEEERKRKLL 518
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568924015 1096 VKALK-RQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQL------QARIKSLEKDawRKASRSAAESALKQE 1161
Cdd:pfam17380 519 EKEMEeRQKAIYEEERRREAEEERRKQQEMEERRRIQEQMrkateeRSRLEAMERE--REMMRQIVESEKARA 589
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
724-892 |
1.25e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 724 FRRRILglEQQLKEARGLAEGgEAVEARLRDKVHRLEVEKQQLEEALNAAREEEgnlaaakRALEVRLDEAQRGLARLGQ 803
Cdd:PRK12704 24 VRKKIA--EAKIKEAEEEAKR-ILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE-------KELRERRNELQKLEKRLLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 804 EQQALNRALE-------EEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIGddsklALQQLQAQ---MEDYKEKAR 873
Cdd:PRK12704 94 KEENLDRKLEllekreeELEKKEKELEQKQQELEKKEEELEELIEEQLQELERIS-----GLTAEEAKeilLEKVEEEAR 168
|
170 180
....*....|....*....|
gi 568924015 874 KEVADAQRQAKDWA-SEAEK 892
Cdd:PRK12704 169 HEAAVLIKEIEEEAkEEADK 188
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
818-1043 |
1.29e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 818 QREALRRSKAELEEQKRLLNRTVDRLNKELEQIG---DDSKLALQQLQAQMEDYKE---KARKEVADAQRQAKDWASEAE 891
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNeeyNELQAELEALQAEIDKLQAeiaEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 892 KNSGGLSRLQDEL--QRLRQALQTSQAERDTARLDKELLAQrLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDE 969
Cdd:COG3883 97 RSGGSVSYLDVLLgsESFSDFLDRLSALSKIADADADLLEE-LKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568924015 970 EKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQN 1043
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGA 249
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
756-1156 |
1.32e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 46.16 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 756 VHRLEVEKQQLEEALNAAREEEGNLA-AAKRALEVRLDEAQRGLARLGQEQQ-ALNRALEEegKQREALRRSKAELEEQK 833
Cdd:NF033838 35 VHAEEVRGGNNPTVTSSGNESQKEHAkEVESHLEKILSEIQKSLDKRKHTQNvALNKKLSD--IKTEYLYELNVLKEKSE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 834 -RLLNRTVDRLNKELEQIGDDSklalqqlqAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQ 912
Cdd:NF033838 113 aELTSKTKKELDAAFEQFKKDT--------LEPGKKVAEATKKVEEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 913 TSQAERDTARLDkellAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLR 992
Cdd:NF033838 185 VKKAELELVKEE----AKEPRDEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDK 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 993 TELMQERSARQDLEcdkiSLERQNKDLKTRLASSEGFQKPSASLSQlesqnqllqerlqaeerEKTVLQSTNRKLERRVK 1072
Cdd:NF033838 261 PKRRAKRGVLGEPA----TPDKKENDAKSSDSSVGEETLPSPSLKP-----------------EKKVAEAEKKVEEAKKK 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1073 ELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEI-------ERLDSLRKKAQRELEEQHEVNEQLQaRIKSLEKDA 1145
Cdd:NF033838 320 AKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELvkeeakePRNEEKIKQAKAKVESKKAEATRLE-KIKTDRKKA 398
|
410
....*....|.
gi 568924015 1146 WRKASRSAAES 1156
Cdd:NF033838 399 EEEAKRKAAEE 409
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
851-1142 |
1.38e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 851 GDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQ 930
Cdd:COG4372 1 GDRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 931 RLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKI 1010
Cdd:COG4372 81 ELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1011 SLERQNKDLKTRLASSEGFQKPSASLSQL-ESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQK 1089
Cdd:COG4372 161 SLQEELAALEQELQALSEAEAEQALDELLkEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLD 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568924015 1090 DQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLE 1142
Cdd:COG4372 241 ALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAAL 293
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
356-1152 |
1.51e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 356 KMEELQKKLDEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLERRKgevQQSSKELQNMKLLLGQEEGLRHGLEAQVK 435
Cdd:TIGR00606 378 ELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQ---EQADEIRDEKKGLGRTIELKKEILEKKQE 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 436 ELQLKLKHSQSPDSGKESLLK-DLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRD 514
Cdd:TIGR00606 455 ELKFVIKELQQLEGSSDRILElDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTR 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 515 TEQLRRSMQDATQDHAALEAERQKMSSLVREL-----QRELEETSEETGHWQSMFQKNKEELRATKQELLQLRMEKEEME 589
Cdd:TIGR00606 535 TQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNEL 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 590 EELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQA-----EQQNQEVTGRHQN--QVLEKQLAALREEA 662
Cdd:TIGR00606 615 ESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGatavySQFITQLTDENQSccPVCQRVFQTEAELQ 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 663 DRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLA 742
Cdd:TIGR00606 695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL 774
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 743 EGGEAVEARLRDKVHRLEVEKQQLEEAlnaareEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREAL 822
Cdd:TIGR00606 775 GTIMPEEESAKVCLTDVTIMERFQMEL------KDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELN 848
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 823 RRSKAELEEQKRLLNRTVDRLNKELEQIGDdsklALQQLQaQMEDYKEKARKEVADAQRQAKDwasEAEKNSGGLSRLQD 902
Cdd:TIGR00606 849 RKLIQDQQEQIQHLKSKTNELKSEKLQIGT----NLQRRQ-QFEEQLVELSTEVQSLIREIKD---AKEQDSPLETFLEK 920
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 903 ELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAEN-KKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRV 981
Cdd:TIGR00606 921 DQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDiENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDM 1000
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 982 NRGRDQVDqlrTELMQERSARQDLECDKIslERQNKDLKTRLASSEGfQKPSASLSQLESQNQLLQERLQAEEREKTVLQ 1061
Cdd:TIGR00606 1001 RLMRQDID---TQKIQERWLQDNLTLRKR--ENELKEVEEELKQHLK-EMGQMQVLQMKQEHQKLEENIDLIKRNHVLAL 1074
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1062 STNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALkrqvdeAEEEIERLDSLRKKAQRELEEQHEVNeqlQARIKSL 1141
Cdd:TIGR00606 1075 GRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRT------TELVNKDLDIYYKTLDQAIMKFHSMK---MEEINKI 1145
|
810
....*....|.
gi 568924015 1142 EKDAWRKASRS 1152
Cdd:TIGR00606 1146 IRDLWRSTYRG 1156
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
714-1136 |
1.84e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 714 LRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDE 793
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQ 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 794 AQRGLARLGQEQQALnralEEEGKQREALRRSKAELEEQKRLLNRtVDRLNKELEQIGDDSKLALQqlQAQMEDYKEKAR 873
Cdd:TIGR00618 238 TQQSHAYLTQKREAQ----EEQLKKQQLLKQLRARIEELRAQEAV-LEETQERINRARKAAPLAAH--IKAVTQIEQQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 874 KEVADAQRQAKDWASEAEKNSGGLSRlQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQdDKARQL 953
Cdd:TIGR00618 311 RIHTELQSKMRSRAKLLMKRAAHVKQ-QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIH-TLQQQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 954 KSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPS 1033
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1034 ASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVnDQKDQLTLRVKALKRQVDEAEEEIER- 1112
Cdd:TIGR00618 469 KEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI-DNPGPLTRRMQRGEQTYAQLETSEEDv 547
|
410 420
....*....|....*....|....*..
gi 568924015 1113 ---LDSLRKKAQRELEEQHEVNEQLQA 1136
Cdd:TIGR00618 548 yhqLTSERKQRASLKEQMQEIQQSFSI 574
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
510-1142 |
1.86e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 510 QYQRDTEQLRRSMQDATQDHaaLEAERQKMSSLVRELQRELEETSEetghwqsMFQKNKEELRatkQELLQLRMEKEEME 589
Cdd:pfam15921 56 KYEVELDSPRKIIAYPGKEH--IERVLEEYSHQVKDLQRRLNESNE-------LHEKQKFYLR---QSVIDLQTKLQEMQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 590 eelgekmevLQRDlEQARASTRDTHQVEELKKELRRTQGELKELQAEQqnqevtgrhqnqvlEKQLAALREEADRGRELE 669
Cdd:pfam15921 124 ---------MERD-AMADIRRRESQSQEDLRNQLQNTVHELEAAKCLK--------------EDMLEDSNTQIEQLRKMM 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 670 QQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRR--ATVETTLRETQEENDEFRRRILGLEQQLkearglaeggEA 747
Cdd:pfam15921 180 LSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSlgSAISKILRELDTEISYLKGRIFPVEDQL----------EA 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 748 VEARLRDKVHRLEVEKQQLEEALNAAREeegnlaaakralevrldeaqrglarlgQEQQALNRALEEEGKQREALRRSKA 827
Cdd:pfam15921 250 LKSESQNKIELLLQQHQDRIEQLISEHE---------------------------VEITGLTEKASSARSQANSIQSQLE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 828 ELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRL 907
Cdd:pfam15921 303 IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 908 RQALQTSQAERDTARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAE----LDEEKNTVELLTDRVNR 983
Cdd:pfam15921 383 LADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcqgqMERQMAAIQGKNESLEK 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 984 GRDQVDQLRTELMQERSARQDLECDKISL---ERQNKDLKTRLASSE-GFQKPSASLSQLESQNQLLQERLQAEEREKTV 1059
Cdd:pfam15921 463 VSSLTAQLESTKEMLRKVVEELTAKKMTLessERTVSDLTASLQEKErAIEATNAEITKLRSRVDLKLQELQHLKNEGDH 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1060 LQSTNRKLERRVKELSiQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIK 1139
Cdd:pfam15921 543 LRNVQTECEALKLQMA-EKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIR 621
|
...
gi 568924015 1140 SLE 1142
Cdd:pfam15921 622 ELE 624
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
534-1104 |
1.88e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 534 AERQKMSSLVRELQ--RELEETSEETGHWQSMFqKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTR 611
Cdd:pfam12128 218 LNRQQVEHWIRDIQaiAGIMKIRPEFTKLQQEF-NTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 612 DthQVEELKKELRrtqGELKELQAEQQNQevtgRHQNQVLEKQLAALREEADRGRELEQQNLQLQKTlqqlrqDCEEASK 691
Cdd:pfam12128 297 D--QWKEKRDELN---GELSAADAAVAKD----RSELEALEDQHGAFLDADIETAAADQEQLPSWQS------ELENLEE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 692 akvasETEAMVLGQRRATVETTLREtQEENDEFRRRILGLEQQLKEARGLAEGGEAVEarlRDKVHRLEVE-KQQLEEAL 770
Cdd:pfam12128 362 -----RLKALTGKHQDVTAKYNRRR-SKIKEQNNRDIAGIKDKLAKIREARDRQLAVA---EDDLQALESElREQLEAGK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 771 NAAREEEGNLAAAKRALEVRLDEAQ---RGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKEl 847
Cdd:pfam12128 433 LEFNEEEYRLKSRLGELKLRLNQATatpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQA- 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 848 EQIGDDSKLALQQLQAQMEdykEKARKEVADAQRQAKDWaseaeknSGGLSRLQDELQRLRQALQTSQAERDTARlDKEL 927
Cdd:pfam12128 512 SRRLEERQSALDELELQLF---PQAGTLLHFLRKEAPDW-------EQSIGKVISPELLHRTDLDPEVWDGSVGG-ELNL 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 928 LAQRLQgLEQEAENKKRFQDDkarqlkSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLEC 1007
Cdd:pfam12128 581 YGVKLD-LKRIDVPEWAASEE------ELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARL 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1008 DKISL--ERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQA--EEREKTVLQSTNRKLERR---VKELSIQIDD 1080
Cdd:pfam12128 654 DLRRLfdEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAwlEEQKEQKREARTEKQAYWqvvEGALDAQLAL 733
|
570 580
....*....|....*....|....
gi 568924015 1081 ERQHVNDQKDQLTLRVKALKRQVD 1104
Cdd:pfam12128 734 LKAAIAARRSGAKAELKALETWYK 757
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
900-1023 |
2.19e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 900 LQDELQRLRQALQTSQAERDtarldkellaqRLQGLEQEAenkkrfqddkARQLKSLEEKVSRLEAELDEEKNTVELLTD 979
Cdd:PRK09039 79 LQDSVANLRASLSAAEAERS-----------RLQALLAEL----------AGAGAAAEGRAGELAQELDSEKQVSARALA 137
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 568924015 980 RVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRL 1023
Cdd:PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
963-1125 |
2.37e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 44.75 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 963 LEAELDEEKNTVELLTDRVNRGRDQVDQLRTElMQERSARQDLECDkiSLERQNKDLKTRLASSegFQKPSASLSQLESQ 1042
Cdd:pfam09787 45 LTLELEELRQERDLLREEIQKLRGQIQQLRTE-LQELEAQQQEEAE--SSREQLQELEEQLATE--RSARREAEAELERL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1043 NQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDeRQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQR 1122
Cdd:pfam09787 120 QEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQLTS-KSQSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVL 198
|
...
gi 568924015 1123 ELE 1125
Cdd:pfam09787 199 QLE 201
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
800-970 |
2.58e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.20 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 800 RLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLL---NRTVDRLNKELEQIGDDSKLALQQLQAQMEDYKEKARKEV 876
Cdd:PRK00409 496 RLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELeqkAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 877 ADAQRQAKdwaSEAEKnsgglsrLQDELQRLRQALQTSQAERDTARLDKElLAQRLQGLEQEAENKKRFQD-----DKAR 951
Cdd:PRK00409 576 QQAIKEAK---KEADE-------IIKELRQLQKGGYASVKAHELIEARKR-LNKANEKKEKKKKKQKEKQEelkvgDEVK 644
|
170
....*....|....*....
gi 568924015 952 qLKSLEEKVSRLEAELDEE 970
Cdd:PRK00409 645 -YLSLGQKGEVLSIPDDKE 662
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
764-1113 |
2.96e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 44.83 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 764 QQLEEALNAAREEegNLAAAKRALevrlDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVD-- 841
Cdd:PRK04778 86 EQLFEAEELNDKF--RFRKAKHEI----NEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLan 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 842 -----RLNKELEQigddsklALQQLQAQMEDYKE--------KARKEVADAQRQAKDWASEAEKNSGGLSRLQ----DEL 904
Cdd:PRK04778 160 rfsfgPALDELEK-------QLENLEEEFSQFVEltesgdyvEAREILDQLEEELAALEQIMEEIPELLKELQtelpDQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 905 QRLRQALQtsQAERDTARLDKELLAQRLQGLEQEAENKKrfQDDKARQLKSLEEKVSRLEAELD----------EEKNTV 974
Cdd:PRK04778 233 QELKAGYR--ELVEEGYHLDHLDIEKEIQDLKEQIDENL--ALLEELDLDEAEEKNEEIQERIDqlydilerevKARKYV 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 975 EL----LTDRVNRGRDQVDQLRTELMQ----------ERSARQDLECDKISLERQNKDLKTRLASSEG--------FQKP 1032
Cdd:PRK04778 309 EKnsdtLPDFLEHAKEQNKELKEEIDRvkqsytlnesELESVRQLEKQLESLEKQYDEITERIAEQEIayselqeeLEEI 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1033 SASLSQLESQNQLLQERLQA---EERE--------KTVLQSTNRKLERR--------VKELSIQIDDERQHVNDQKDQLT 1093
Cdd:PRK04778 389 LKQLEEIEKEQEKLSEMLQGlrkDELEarekleryRNKLHEIKRYLEKSnlpglpedYLEMFFEVSDEIEALAEELEEKP 468
|
410 420
....*....|....*....|
gi 568924015 1094 LRVKALKRQVDEAEEEIERL 1113
Cdd:PRK04778 469 INMEAVNRLLEEATEDVETL 488
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
763-1055 |
2.96e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 45.04 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 763 KQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNraleEEGKQREALRRSKAELEEQKRLL--NRTV 840
Cdd:PRK10929 29 TQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVID----NFPKLSAELRQQLNNERDEPRSVppNMST 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 841 DRLNKELEQIGddSKLALQQLQAQMEdyKEKARkEVADAQRQAKDWASEAeknsgglSRLQDELQRLRQALQTSQAErdt 920
Cdd:PRK10929 105 DALEQEILQVS--SQLLEKSRQAQQE--QDRAR-EISDSLSQLPQQQTEA-------RRQLNEIERRLQTLGTPNTP--- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 921 arldkellaqrlqgLEQEaenkkrfqddkarQLKSLEEKVSRLEAELDEekntVELLTDRVNRgRDQVDQLRTELMQERS 1000
Cdd:PRK10929 170 --------------LAQA-------------QLTALQAESAALKALVDE----LELAQLSANN-RQELARLRSELAKKRS 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568924015 1001 ARQDLECDKI-----SLERQNKDL---KTRLASSEGFQKPSASLSQLESQNQLLQERLQAEER 1055
Cdd:PRK10929 218 QQLDAYLQALrnqlnSQRQREAERaleSTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQR 280
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
959-1127 |
3.09e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 959 KVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQ 1038
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1039 LESqnqlLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRK 1118
Cdd:COG1579 91 YEA----LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
....*....
gi 568924015 1119 KAQRELEEQ 1127
Cdd:COG1579 167 ELAAKIPPE 175
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
604-1144 |
4.05e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 4.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 604 EQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRhqNQVLEKQLAALREEADRGRELEQQNLQLQKtlqqlr 683
Cdd:TIGR00618 179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHER--KQVLEKELKHLREALQQTQQSHAYLTQKRE------ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 684 qDCEEASKAKVAseteamvLGQRRATVEtTLRETQEENDEFRRRIlglEQQLKEARgLAEGGEAVEaRLRDKVHRLEVEK 763
Cdd:TIGR00618 251 -AQEEQLKKQQL-------LKQLRARIE-ELRAQEAVLEETQERI---NRARKAAP-LAAHIKAVT-QIEQQAQRIHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 764 QQLEEALNAAREEEGNLAAAKRALEvrldEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLlnRTVDRL 843
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIE----EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTL--QQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 844 NKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARL 923
Cdd:TIGR00618 391 LTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 924 DKELLAQRLQGLEQEAENKK---RFQDDKARQLKSLEEKVSRLEAELDEEKNTvELLTDRVNRGRDQVDQLRTELMQERS 1000
Cdd:TIGR00618 471 REQQLQTKEQIHLQETRKKAvvlARLLELQEEPCPLCGSCIHPNPARQDIDNP-GPLTRRMQRGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1001 ARQDLECDKISLERQNKDLK-TRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRvKELSIQID 1079
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQqSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK-LQPEQDLQ 628
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568924015 1080 DERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNE--QLQARIKSLEKD 1144
Cdd:TIGR00618 629 DVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAlqKMQSEKEQLTYW 695
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
687-1024 |
6.10e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 687 EEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQL 766
Cdd:COG4372 6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 767 EEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKE 846
Cdd:COG4372 86 NEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 847 LEQIGddsklalQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKE 926
Cdd:COG4372 166 LAALE-------QELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSAL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 927 LLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLE 1006
Cdd:COG4372 239 LDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALL 318
|
330
....*....|....*...
gi 568924015 1007 CDKISLERQNKDLKTRLA 1024
Cdd:COG4372 319 AALLELAKKLELALAILL 336
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
616-1075 |
6.79e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 616 VEELKKELRRTQGELKELQAEQQN-QEVTGRHQNQVlekqlAA--LREEADRGRELEQQNlqlqktlqqlrqdceEASKA 692
Cdd:PRK04863 235 MEAALRENRMTLEAIRVTQSDRDLfKHLITESTNYV-----AAdyMRHANERRVHLEEAL---------------ELRRE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 693 KVASETEamvlgqrRATVETTLRETQEENDEFRRRILGLEQQLK----------EARGLAEGGEAVEARLRDKVHRLEVE 762
Cdd:PRK04863 295 LYTSRRQ-------LAAEQYRLVEMARELAELNEAESDLEQDYQaasdhlnlvqTALRQQEKIERYQADLEELEERLEEQ 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 763 KQQLEEalnaAREEEGNLAAAKRALEVRLDEAQRGLA-----------RLGQEQQALnRALEEEGK--QREALRRSKAE- 828
Cdd:PRK04863 368 NEVVEE----ADEQQEENEARAEAAEEEVDELKSQLAdyqqaldvqqtRAIQYQQAV-QALERAKQlcGLPDLTADNAEd 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 829 -LEEQKRLLNRTVDRLNkELEQIGDDSKLALQQLQAQMedykEKARKEVADAQR-QAKDWASEAEKNSGGLSRLQDELQR 906
Cdd:PRK04863 443 wLEEFQAKEQEATEELL-SLEQKLSVAQAAHSQFEQAY----QLVRKIAGEVSRsEAWDVARELLRRLREQRHLAEQLQQ 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 907 LRQAL----QTSQAERDTARLDKELLAQRLQGLEQEAEnkkrfqddkarqlksLEEKVSRLEAELDEEKNTVELLTDRVN 982
Cdd:PRK04863 518 LRMRLseleQRLRQQQRAERLLAEFCKRLGKNLDDEDE---------------LEQLQEELEARLESLSESVSEARERRM 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 983 RGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEgfqkpsaslsQLESQNQLLQERLQAEEREKTVLQS 1062
Cdd:PRK04863 583 ALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQ----------DVTEYMQQLLERERELTVERDELAA 652
|
490
....*....|...
gi 568924015 1063 TNRKLERRVKELS 1075
Cdd:PRK04863 653 RKQALDEEIERLS 665
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
722-1115 |
6.84e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 43.69 E-value: 6.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 722 DEFRRRILGLEQQLKEARGLAEGGEAVEARlrDKVHRLEVEKQQLEEALNAAREEegnLAAAKRALEVRLDEAQRGLARL 801
Cdd:pfam06160 149 DELEKQLAEIEEEFSQFEELTESGDYLEAR--EVLEKLEEETDALEELMEDIPPL---YEELKTELPDQLEELKEGYREM 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 802 GQEQQAL-NRALEEEGKQ-REALRRSKAELEEQKrllnrtVDRLNKELEQIGDDsklaLQQLQAQMEdyKE-KARKEVAD 878
Cdd:pfam06160 224 EEEGYALeHLNVDKEIQQlEEQLEENLALLENLE------LDEAEEALEEIEER----IDQLYDLLE--KEvDAKKYVEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 879 AQRQAKDWASEAEKNSgglSRLQDELQRLRQALQTSQAErdtarldkellAQRLQGLEqeaenkkrfqddkaRQLKSLEE 958
Cdd:pfam06160 292 NLPEIEDYLEHAEEQN---KELKEELERVQQSYTLNENE-----------LERVRGLE--------------KQLEELEK 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 959 KVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLrtelmqersarqdlecdkislERQNKDLKTRLASsegfqkpsaslsq 1038
Cdd:pfam06160 344 RYDEIVERLEEKEVAYSELQEELEEILEQLEEI---------------------EEEQEEFKESLQS------------- 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1039 LESQNQLLQERLQaeeREKTVLQSTNRKLERR--------VKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEI 1110
Cdd:pfam06160 390 LRKDELEAREKLD---EFKLELREIKRLVEKSnlpglpesYLDYFFDVSDEIEDLADELNEVPLNMDEVNRLLDEAQDDV 466
|
....*
gi 568924015 1111 ERLDS 1115
Cdd:pfam06160 467 DTLYE 471
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1039-1153 |
6.89e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 6.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1039 LESQNQLLQERLQAEeREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRK 1118
Cdd:PRK12704 60 LEAKEEIHKLRNEFE-KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568924015 1119 KAQRELEE-----------------QHEVNEQLQARIKSLEKDAWRKASRSA 1153
Cdd:PRK12704 139 EQLQELERisgltaeeakeillekvEEEARHEAAVLIKEIEEEAKEEADKKA 190
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
599-823 |
8.04e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 8.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 599 LQRDLEQARASTRDT-----HQVEELKKELRRTQGELKELQaeQQNQEVTGRHQNQVLEKQLAALREEADRGReLEQQNL 673
Cdd:COG3206 162 LEQNLELRREEARKAlefleEQLPELRKELEEAEAALEEFR--QKNGLVDLSEEAKLLLQQLSELESQLAEAR-AELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 674 QLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQEENDEFRRRILGLEQQLKEARglaeggEAVEARLR 753
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALR------AQLQQEAQ 312
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 754 DKVHRLEVEKQQLEEALNAAREEegnLAAAKRALEvRLDEAQRGLARLGQEQQALNRALEEEGKQREALR 823
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQ---LAQLEARLA-ELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
710-921 |
1.11e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 710 VETTLRETQEENDEFRRRILGLEQQLKEARGLAEggeaveaRLRDKVHRLEVEKQQLEEALNAAREEegnLAAAKRALEV 789
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYN-------ELQAELEALQAEIDKLQAEIAEAEAE---IEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 790 RLDEAQRGLARLG---------------QEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKELEQIgDDS 854
Cdd:COG3883 91 RARALYRSGGSVSyldvllgsesfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL-EAA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568924015 855 KLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTA 921
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
920-1157 |
1.29e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 920 TARLDKELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELmqER 999
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL--GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1000 SARQdlecdkISLERQNKDLKTRLASSEGFQ---KPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSI 1076
Cdd:COG3883 91 RARA------LYRSGGSVSYLDVLLGSESFSdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1077 QIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKDAWRKASRSAAES 1156
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
.
gi 568924015 1157 A 1157
Cdd:COG3883 245 S 245
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
563-940 |
1.50e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 563 MFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDthQVEELKKELRRTQGELKELQAEQQNQEV 642
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELES--RVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 643 TGRHQNQVLEKQLAALREEADRGRELEQqnlqlqktlqqlrqDCEEASKAKVASETEAMVLGQRRATVETTLRETQEEND 722
Cdd:pfam07888 109 SSEELSEEKDALLAQRAAHEARIRELEE--------------DIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 723 EFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAK---RALEVRLDEAQRGLA 799
Cdd:pfam07888 175 QLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLeelRSLQERLNASERKVE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 800 RLGQEQQAL----NRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLNKE---LEQIGDDSKLALQQLQAQMEDYKEKA 872
Cdd:pfam07888 255 GLGEELSSMaaqrDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQEretLQQSAEADKDRIEKLSAELQRLEERL 334
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568924015 873 RKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEAE 940
Cdd:pfam07888 335 QEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLE 402
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
974-1149 |
1.53e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 974 VELLTDRVNRGRDQVDQLRTELMQERSARQDLEcdkiSLERQNKDLKTRLASSEGFQK---PSASLSQLESQNQLLQERL 1050
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELE----ELEAELEELREELEKLEKLLQllpLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1051 QAEEREKTVLQStnrkLERRVKELSIQIDDERQHVNDQKDQLTLrvkALKRQVDEAEEEIERLDSLRKKAQRELEEQHEV 1130
Cdd:COG4717 149 EELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSL---ATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170
....*....|....*....
gi 568924015 1131 NEQLQARIKSLEKDAWRKA 1149
Cdd:COG4717 222 LEELEEELEQLENELEAAA 240
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1014-1153 |
1.58e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.39 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1014 RQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRkLERRVKELSIQIDDERQHVNDQKDQLT 1093
Cdd:PRK12705 30 RLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQR-EEERLVQKEEQLDARAEKLDNLENQLE 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1094 LRVKALKRQVDEAEEEIERLD-------SLRKKAQREL---EEQHEVNEQLQARIKSLEKDAWRKASRSA 1153
Cdd:PRK12705 109 EREKALSARELELEELEKQLDnelyrvaGLTPEQARKLllkLLDAELEEEKAQRVKKIEEEADLEAERKA 178
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
813-1132 |
1.68e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 813 EEEGKQREALRRSKAELEEQKRLLNrTVDRLNKELEQIGDDSKLAL---QQLQAQMEDYKEKARKEVADAQRQAKDWASE 889
Cdd:PRK01156 325 HAIIKKLSVLQKDYNDYIKKKSRYD-DLNNQILELEGYEMDYNSYLksiESLKKKIEEYSKNIERMSAFISEILKIQEID 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 890 AEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELLAQRLQGLEQEA-----------ENKKRFQDDKARQLKSLEE 958
Cdd:PRK01156 404 PDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgttlgeEKSNHIINHYNEKKSRLEE 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 959 KVSRLEAE---LDEEKNTVELLTDRVNRGrdQVDQLRTELMQERSARQDLECDKISLER-QNKDLKTRLASSegfQKPSA 1034
Cdd:PRK01156 484 KIREIEIEvkdIDEKIVDLKKRKEYLESE--EINKSINEYNKIESARADLEDIKIKINElKDKHDKYEEIKN---RYKSL 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1035 SLSQLESQN----QLLQER----LQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEA 1106
Cdd:PRK01156 559 KLEDLDSKRtswlNALAVIslidIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEI 638
|
330 340
....*....|....*....|....*.
gi 568924015 1107 EEEIERLDSLRKKAQRELEEQHEVNE 1132
Cdd:PRK01156 639 QENKILIEKLRGKIDNYKKQIAEIDS 664
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
714-917 |
1.86e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 42.67 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 714 LRETQEENDEFRRR------ILGLEQQLKEA-----RGLAE--GGEAVEARLRDKVHRLEVEKQQLEEALNAARE--EEG 778
Cdd:pfam13779 491 LRAAQERLSEALERgasdeeIAKLMQELREAlddymQALAEqaQQNPQDLQQPDDPNAQEMTQQDLQRMLDRIEElaRSG 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 779 NLAAAKRalevRLDEAQRGLARL--GQEQQALNRALEEEGKQREALRRSkaeLEEQKRLLNRTVDRLNKELEQIGDDSKL 856
Cdd:pfam13779 571 RRAEAQQ----MLSQLQQMLENLqaGQPQQQQQQGQSEMQQAMDELGDL---LREQQQLLDETFRQLQQQGGQQQGQPGQ 643
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568924015 857 ALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAE 917
Cdd:pfam13779 644 QGQQGQGQQPGQGGQQPGAQMPPQGGAEALGDLAERQQALRRRLEELQDELKELGGKEPGQ 704
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
861-983 |
1.93e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 861 LQAQMEDYKEKARKEvadAQRQAKDWASEAEKNSGGLSRLQDELQRLRQalQTSQAERDTARLDKEL--LAQRLQGLEQE 938
Cdd:COG2433 382 LEELIEKELPEEEPE---AEREKEHEERELTEEEEEIRRLEEQVERLEA--EVEELEAELEEKDERIerLERELSEARSE 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 568924015 939 AENKKRfqddKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNR 983
Cdd:COG2433 457 ERREIR----KDREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
516-850 |
2.14e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 516 EQLRRSMQDATQDHAALEAERQKMSSLVRELQRELeetseeTGHWQSMFQKNKE-ELRATKQELLQL-----RMEKEEME 589
Cdd:PRK04863 789 EQLRAEREELAERYATLSFDVQKLQRLHQAFSRFI------GSHLAVAFEADPEaELRQLNRRRVELeralaDHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 590 EELGEKMEVLQRDLEQARASTRDTHQVEELKKELRRTQGELKELQAEQQNQEVTGRHQNQvLEKQLAALREEADRGRELE 669
Cdd:PRK04863 863 QRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQ-LEPIVSVLQSDPEQFEQLK 941
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 670 QQNLQLQKTLqqlrqdceEASKAKVASETEAMvlgQRRA-----TVETTLRETQEENDEFRRRILGLEQQLKEARglaEG 744
Cdd:PRK04863 942 QDYQQAQQTQ--------RDAKQQAFALTEVV---QRRAhfsyeDAAEMLAKNSDLNEKLRQRLEQAEQERTRAR---EQ 1007
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 745 GEAVEARLRDKVHRLevekQQLEEALNAAREeegNLAAAKRALE---VRLDEAQRGLARLGQEQqaLNRALEEEGKQREA 821
Cdd:PRK04863 1008 LRQAQAQLAQYNQVL----ASLKSSYDAKRQ---MLQELKQELQdlgVPADSGAEERARARRDE--LHARLSANRSRRNQ 1078
|
330 340
....*....|....*....|....*....
gi 568924015 822 LRRSKAELEEQKRLLNRTVDRLNKELEQI 850
Cdd:PRK04863 1079 LEKQLTFCEAEMDNLTKKLRKLERDYHEM 1107
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
715-977 |
2.47e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.35 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 715 RETQEENDEFRR---RILGLEQQLKEA-RGLAEggeaVEARLRDkvhrLEVEKQQLEEALNAAREEEgnlAAAKRA---- 786
Cdd:PRK10929 123 RQAQQEQDRAREisdSLSQLPQQQTEArRQLNE----IERRLQT----LGTPNTPLAQAQLTALQAE---SAALKAlvde 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 787 LEV--------------RLDEAQRGLARLGQEQQALNRALEEEgKQRE---ALRRSKAELEEQKRLLNRTVD--RLNKEL 847
Cdd:PRK10929 192 LELaqlsannrqelarlRSELAKKRSQQLDAYLQALRNQLNSQ-RQREaerALESTELLAEQSGDLPKSIVAqfKINREL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 848 EQigddsklALQQlQAQMEDykekarkEVADAQRQAkdwASEAEKNSGGLSRLQDELQ------RLRQALQTsQAER--- 918
Cdd:PRK10929 271 SQ-------ALNQ-QAQRMD-------LIASQQRQA---ASQTLQVRQALNTLREQSQwlgvsnALGEALRA-QVARlpe 331
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568924015 919 --DTARLDKELLAQRLQGLEQEAENKKRFQDDKARQ-----LKSLEEKVsrLEAELDEEKNTVELL 977
Cdd:PRK10929 332 mpKPQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQadgqpLTAEQNRI--LDAQLRTQRELLNSL 395
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
716-1089 |
3.04e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 716 ETQEENDEFRRRILGLEQQLKEARGLAEGGEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQ 795
Cdd:PRK01156 343 KKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDIS 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 796 RGLARLGQEQQALNRALEEEGKQREAL------------------RRSKAELEEQKRLLNRTVDRLNKELEQIgDDSKLA 857
Cdd:PRK01156 423 SKVSSLNQRIRALRENLDELSRNMEMLngqsvcpvcgttlgeeksNHIINHYNEKKSRLEEKIREIEIEVKDI-DEKIVD 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 858 LQQLQAQMEdyKEKARKEVADaQRQAKDWASEAEKNSGGLSRLQDelqrlrQALQTSQAERDTARLDKELLAQR----LQ 933
Cdd:PRK01156 502 LKKRKEYLE--SEEINKSINE-YNKIESARADLEDIKIKINELKD------KHDKYEEIKNRYKSLKLEDLDSKrtswLN 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 934 GLEQ----EAENKKRFQDDKARQLKSLEEKVSRLEAELDEEK----NTVELLTDRVNRGRDQVDQLrtelmqersarQDL 1005
Cdd:PRK01156 573 ALAVisliDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKsyidKSIREIENEANNLNNKYNEI-----------QEN 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1006 ECDKISLERQNKDLKTRLASSEGFQKP----SASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDE 1081
Cdd:PRK01156 642 KILIEKLRGKIDNYKKQIAEIDSIIPDlkeiTSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721
|
....*...
gi 568924015 1082 RQHVNDQK 1089
Cdd:PRK01156 722 NETLESMK 729
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
827-995 |
3.22e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 827 AELEEQKRLLN-RTVDRLNKELEQIGDDSKLALQQLQAQMEdykeKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQ 905
Cdd:COG1579 1 AMPEDLRALLDlQELDSELDRLEHRLKELPAELAELEDELA----ALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 906 RLRQALQTSQAERDTARLDKEL--LAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTDRVNR 983
Cdd:COG1579 77 KYEEQLGNVRNNKEYEALQKEIesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
170
....*....|..
gi 568924015 984 GRDQVDQLRTEL 995
Cdd:COG1579 157 ELEELEAEREEL 168
|
|
| ADIP |
pfam11559 |
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ... |
1012-1113 |
3.54e-03 |
|
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.
Pssm-ID: 463295 [Multi-domain] Cd Length: 151 Bit Score: 39.22 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1012 LERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ 1091
Cdd:pfam11559 44 LQQRDRDLEFRESLNETIRTLEAEIERLQSKIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEELQRLKNA 123
|
90 100
....*....|....*....|..
gi 568924015 1092 LTLRVKALKRQVDEAEEEIERL 1113
Cdd:pfam11559 124 LQQIKTQFAHEVKKRDREIEKL 145
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
286-836 |
4.55e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 286 DLLRDQRetappGSADHVKATIYGILREGSSESEASVRRKVSLVLEQMQPLGMVSPASTKALAGQAELTRKMEELQKKLD 365
Cdd:PRK02224 180 RVLSDQR-----GSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 366 EEVKKRQKLEPSRVGLERQLEEKAEECH----RLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKL 441
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRdlreRLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 442 KHSQSPDSGKESLLKDLLD-------TRELLEELLEGKQRVEEQLRLRERELTALKGALKE-EVASHDQEVEHVRLQYQR 513
Cdd:PRK02224 335 VAAQAHNEEAESLREDADDleeraeeLREEAAELESELEEAREAVEDRREEIEELEEEIEElRERFGDAPVDLGNAEDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 514 dtEQLRRSMQDATQDHAALEAERQKMSSLVRELQRELEETS--------EETGHWQSMFQKN--KEELRAtkqELLQLRM 583
Cdd:PRK02224 415 --EELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvEGSPHVETIEEDRerVEELEA---ELEDLEE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 584 EKEEmeeelgekmevLQRDLEQARASTRDTHQVEELkKELRRTQGELKELQAEQQNQEvtgrhqnqvlEKQLAALREEAD 663
Cdd:PRK02224 490 EVEE-----------VEERLERAEDLVEAEDRIERL-EERREDLEELIAERRETIEEK----------RERAEELRERAA 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 664 rgrELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVEtTLRETQEENDEFRRRILGLEQQLKEargLAE 743
Cdd:PRK02224 548 ---ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREA---LAE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 744 GGEAVEARLRDKVHRleveKQQLEEALNAAREEE--GNLAAAKRALEvRLDEAQRGLARLGQEQQALNRALEEEGKQREA 821
Cdd:PRK02224 621 LNDERRERLAEKRER----KRELEAEFDEARIEEarEDKERAEEYLE-QVEEKLDELREERDDLQAEIGAVENELEELEE 695
|
570
....*....|....*
gi 568924015 822 LRRSKAELEEQKRLL 836
Cdd:PRK02224 696 LRERREALENRVEAL 710
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
745-1109 |
5.01e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 745 GEAVEARLRDKVHRLEVEKQQLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRR 824
Cdd:COG4372 1 GDRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 825 SKAELEEQKRLLNRTVDRLNKELEQIGDDSKLALQQLQA------QMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLS 898
Cdd:COG4372 81 ELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEElqkerqDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 899 RLQDELQRLRQALQTSQAERDTARLDkELLAQRLQGLEQEAENKKRFQDDKARQLKSLEEKVSRLEAELDEEKNTVELLT 978
Cdd:COG4372 161 SLQEELAALEQELQALSEAEAEQALD-ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 979 DRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQAEEREKT 1058
Cdd:COG4372 240 DALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLA 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 568924015 1059 VLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEE 1109
Cdd:COG4372 320 ALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
873-1144 |
5.88e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 873 RKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTARLDKELlaqrlqGLEQEAENKKRFQDDKARQ 952
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHF------KLKEDHEKIQHLEEEYKKE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 953 LKSLEEKVSRLEAELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKP 1032
Cdd:pfam05483 235 INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKA 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1033 SASLSQLESQN--QLLQER---LQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAE 1107
Cdd:pfam05483 315 LEEDLQIATKTicQLTEEKeaqMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE 394
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 568924015 1108 E----------EIERLDSLRKKAQRELEEQHEVnEQLQARIKSLEKD 1144
Cdd:pfam05483 395 EmtkfknnkevELEELKKILAEDEKLLDEKKQF-EKIAEELKGKEQE 440
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
765-931 |
6.35e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 40.10 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 765 QLEEALNAAREEEGNLAAAKRALEVRLDEAQRGLARLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDRLN 844
Cdd:pfam00529 55 DYQAALDSAEAQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAP 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 845 keleqIGDDSKLALQQLQAQMEDYKEKARKEVADAQRQAKDWASEAEKNsggLSRLQDELQRLRQALQTSQAERDTARLD 924
Cdd:pfam00529 135 -----IGGISRESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAEN---QAEVRSELSGAQLQIAEAEAELKLAKLD 206
|
....*..
gi 568924015 925 KELLAQR 931
Cdd:pfam00529 207 LERTEIR 213
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
951-1170 |
6.82e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 951 RQLKSLEEKVSRLEAELDEEKNTVELLTDRVNRgRDQVDQLRTELmQERSARQDLEcDKISLERQNKDLKTRLASSEgfq 1030
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEK-REYEGYELLK-EKEALERQKEAIERQLASLE--- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1031 kpsASLSQLESQNQLLQERLQAEERektVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLTLRVKALKRQVDEAEEEI 1110
Cdd:TIGR02169 251 ---EELEKLTEEISELEKRLEEIEQ---LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1111 ERLDSLRKKAQRELEEQHEVNEQLQARIKSLEKdawRKASRSAAESALKQEGLSSDEEFD 1170
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTE---EYAELKEELEDLRAELEEVDKEFA 381
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
800-1143 |
6.85e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 800 RLGQEQQALNRALEEEGKQREALRRSKAELEEQKRLLNRTVDrlNKELEQIGDDSKLALQQLQAQMEDYKEKARKEVADA 879
Cdd:PLN02939 30 RLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDE--NGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 880 QRQAKDWASEAEKNSGGLSRLQdeLQRLRQALQTsqAERDTARLDKELLaQRLQGLEQEAENKKRFQddkaRQLKSLEEK 959
Cdd:PLN02939 108 IAAIDNEQQTNSKDGEQLSDFQ--LEDLVGMIQN--AEKNILLLNQARL-QALEDLEKILTEKEALQ----GKINILEMR 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 960 VSRLEAELD---EEKNTVELLtdrvnrgRDQVDQLRTELMQERSArqdlecdkislerqnkdlktrlaSSEGFQKPSASL 1036
Cdd:PLN02939 179 LSETDARIKlaaQEKIHVEIL-------EEQLEKLRNELLIRGAT-----------------------EGLCVHSLSKEL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1037 SQLESQNQLLQ-----------------ERLQAEEREKTVLQSTNRKLERRvkeLSIQIDDERQHVNDQKDQLTLRVKAL 1099
Cdd:PLN02939 229 DVLKEENMLLKddiqflkaelievaeteERVFKLEKERSLLDASLRELESK---FIVAQEDVSKLSPLQYDCWWEKVENL 305
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1100 -------KRQVDEAEEEIERLDSLRKKAQRELEEQHEVN---------EQLQARIKSLEK 1143
Cdd:PLN02939 306 qdlldraTNQVEKAALVLDQNQDLRDKVDKLEASLKEANvskfssykvELLQQKLKLLEE 365
|
|
| HAUS5 |
pfam14817 |
HAUS augmin-like complex subunit 5; This family includes HAUS augmin-like complex subunit 5. ... |
831-1143 |
8.47e-03 |
|
HAUS augmin-like complex subunit 5; This family includes HAUS augmin-like complex subunit 5. The HAUS augmin-like complex contributes to mitotic spindle assembly, maintenance of chromosome integrity and completion of cytokinesis.
Pssm-ID: 464332 [Multi-domain] Cd Length: 643 Bit Score: 40.41 E-value: 8.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 831 EQKRLLNRTVDRLNKELEQIGDDSKLALQQLQAQmEDYKEKARKEVADAQR-----QAKDWASEAEKN--SGGLSRLQDE 903
Cdd:pfam14817 77 ARRLELQKEIERLRAEISRLDKQLEARELELSRE-EAERERALDEISDSRHrqlllEAYDQQCEEARKilAEDHQRLQGQ 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 904 LQRLRQALQtsQAERDTARLDKELLAQRLQGLEQEAEN------KKRFQDDKARQLKSLEEKVSRLEAELDEEKNTV--- 974
Cdd:pfam14817 156 LQQLRDAAR--KAEKEVVFGDSKGSKSSVIALEPQVLRdvreacELRAQFLQELLESSLKAYEGSGIHMNRDQRRAViqh 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 975 ---ELLTDRVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGFQKPSASLSQLESQNQLLQERLQ 1051
Cdd:pfam14817 234 wlsAVETLLTSHPPSHLLQALEHLAAREKTAIQEETESLDVRADAEALRFRYESNHLLDVSSDESSDLPSVRQLLERQWA 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 1052 AEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDqlTLRVKALKRQVDEAEEEIERLDSLRKKAQRELEEQHEVN 1131
Cdd:pfam14817 314 HVQQFLNELAETRSRCQQLQARLQGLKDEAELESLGIGD--TSQNDSLLRQVLELELQAAGLAASRDTLRSECQQLNKLA 391
|
330
....*....|..
gi 568924015 1132 EQLQARIKSLEK 1143
Cdd:pfam14817 392 RERQEALRSLQK 403
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
561-892 |
8.85e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 8.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 561 QSMFQK-NKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRdleQARASTRDTHQVEELKKELRRTQGELKELQAEQQN 639
Cdd:pfam17380 290 QEKFEKmEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDR---QAAIYAEQERMAMERERELERIRQEERKRELERIR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 640 QEvtgrhqnqvlekqlaALREEADRGRELEQQNLQLQKTLQQLRQDCEEASKAKVASETEAMVLGQRRATVETTLRETQE 719
Cdd:pfam17380 367 QE---------------EIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 720 ENDEFRRRIlgleqqlkearglaeggEAVEARLRDKVHRLEVEKQQLEEALNAAREEEgnlaaAKRALEVRLDEAQRGLA 799
Cdd:pfam17380 432 ARQREVRRL-----------------EEERAREMERVRLEEQERQQQVERLRQQEEER-----KRKKLELEKEKRDRKRA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 800 R------LGQEQQALNRALEEEGKQREALR-----RSKAELEEQKRLLNRTVDRLNKELEQigddsklaLQQLQAQMEDY 868
Cdd:pfam17380 490 EeqrrkiLEKELEERKQAMIEEERKRKLLEkemeeRQKAIYEEERRREAEEERRKQQEMEE--------RRRIQEQMRKA 561
|
330 340
....*....|....*....|....*
gi 568924015 869 -KEKARKEVADAQRQAKDWASEAEK 892
Cdd:pfam17380 562 tEERSRLEAMEREREMMRQIVESEK 586
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
385-547 |
9.73e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 9.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 385 LEEKAEECHR-LQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRE 463
Cdd:pfam07888 32 LQNRLEECLQeRAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568924015 464 LLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAALEAERQKMSSLV 543
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLS 191
|
....
gi 568924015 544 RELQ 547
Cdd:pfam07888 192 KEFQ 195
|
|
| |
