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Conserved domains on  [gi|568928148|ref|XP_006502693|]
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BSD domain-containing protein 1 isoform X1 [Mus musculus]

Protein Classification

BSD domain-containing protein( domain architecture ID 10654557)

BSD domain-containing protein similar to Homo sapiens BSD domain-containing protein 1 and synapse-associated protein 1

CATH:  1.10.3970.10
PubMed:  11943536
SCOP:  4001198

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BSD smart00751
domain in transcription factors and synapse-associated proteins;
128-178 7.98e-15

domain in transcription factors and synapse-associated proteins;


:

Pssm-ID: 128990 [Multi-domain]  Cd Length: 51  Bit Score: 68.37  E-value: 7.98e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 568928148   128 SEFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 178
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51
 
Name Accession Description Interval E-value
BSD smart00751
domain in transcription factors and synapse-associated proteins;
128-178 7.98e-15

domain in transcription factors and synapse-associated proteins;


Pssm-ID: 128990 [Multi-domain]  Cd Length: 51  Bit Score: 68.37  E-value: 7.98e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 568928148   128 SEFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 178
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51
BSD pfam03909
BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of ...
 129-182 5.29e-14

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.


Pssm-ID: 461089  Cd Length: 55  Bit Score: 65.99  E-value: 5.29e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 568928148  129 EFCLEEKKGEISELLVGS-PSIRALYTKMVPAAVSHSEFWHRYFYKVHQLEQEQA 182
Cdd:pfam03909   1 GFKLDEKTEEIAQLLLKEdPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQEEE 55
 
Name Accession Description Interval E-value
BSD smart00751
domain in transcription factors and synapse-associated proteins;
128-178 7.98e-15

domain in transcription factors and synapse-associated proteins;


Pssm-ID: 128990 [Multi-domain]  Cd Length: 51  Bit Score: 68.37  E-value: 7.98e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 568928148   128 SEFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLE 178
Cdd:smart00751   1 NSFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKIK 51
BSD pfam03909
BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of ...
 129-182 5.29e-14

BSD domain; This domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.


Pssm-ID: 461089  Cd Length: 55  Bit Score: 65.99  E-value: 5.29e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 568928148  129 EFCLEEKKGEISELLVGS-PSIRALYTKMVPAAVSHSEFWHRYFYKVHQLEQEQA 182
Cdd:pfam03909   1 GFKLDEKTEEIAQLLLKEdPELRKLYEELVPSKVSEEEFWSRYFYLLRALKQEEE 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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