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Conserved domains on  [gi|568928896|ref|XP_006503059|]
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tetratricopeptide repeat protein 39A isoform X3 [Mus musculus]

Protein Classification

tetratricopeptide repeat protein 39( domain architecture ID 12104540)

tetratricopeptide repeat (TPR) protein 39 such as human TTC39B, which promotes the ubiquitination and degradation of liver X receptor

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Iml2-TPR_39 pfam10300
Iml2/Tetratricopeptide repeat protein 39; This is a family of proteins conserved from fungi to ...
27-493 0e+00

Iml2/Tetratricopeptide repeat protein 39; This is a family of proteins conserved from fungi to humans, including fungal Inclusion body clearance protein Iml2 protein, animal tetratricopeptide repeat protein 39A/B/C (TT39A/B/C) and some uncharacterized proteins. Members of this family carry a tetratricopeptide repeat pfam07719 at their C terminus. This entry includes Iml2 and its paralogue-YKR018C from S. cerevisiae; Iml2 localizes to the cytoplasm and nucleus, and its expression is increased in response to DNA replication stress. It is found to be involved in lipid droplet-mediated inclusion body clearing after protein folding stress. In humans, TTC39A (also known as DEME6) is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. It is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive. TTC39B has been linked to lipid metabolism.


:

Pssm-ID: 463047 [Multi-domain]  Cd Length: 469  Bit Score: 632.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896   27 MTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQSLCQRHRRKSSMTDSFSNL 106
Cdd:pfam10300   1 LQALDLFLNNKFEEALELLKPWSKNSMYHALGYSVVAFIQAMLTFEPEDIQQASEALKEAEQVCQRFRKKAQVNESIQNT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  107 VHRptidQFTEEEIHAEVCYAECLLQRAALTFlQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYSKG---------- 176
Cdd:pfam10300  81 DTS----QLYEPGTHAEVCYAECLLLKAALTF-QDESLVSFIKGGYKLRKAYQIYKECLKLINDPQQTKRsspgdsslsh 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  177 ------ESHRHFEGGVKLGVGAFNLdalhtpmpltlqTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGATGHSFRAVLC 250
Cdd:pfam10300 156 ndnnqaEIDEFFESGVNLGFGIFNL------------MLSLLPPRILKLLEFIGFSGDREDGLRLLWEASKSPNIRAALA 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  251 VMLLLCYHTFLTFVLGT--GNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEAIKGNIDAAVRRFEECCEAQQHWKQFHH 328
Cdd:pfam10300 224 LLTLLFYYTGVRQVLGIpgGEGPLEEAEALLLPYRKRYPNGALWLFFEARIESLKGNLDEALELFEECIESQSEWKQVHH 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  329 MCYWELMWCFTYKGQWKMAYFYADLLSKENSWSKATYIYMKAAYLSMFGKEDYKPFG-DNEVELFRAVPGLKLKIAGKSL 407
Cdd:pfam10300 304 LCYWELMWCLVFLHNWKQAANYFLLLVKESSWSHALYTYFAAACLLMLYREEEAPAAkERAVELFREVPTLKQKIAGKSL 383
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  408 PTEKFAIRKSRRYLSPNP--ISLPIPALEMMYIWNGYAVIGKQPTLTDGMLEVITKAeemLAMGPENE-YSADDDCLVKL 484
Cdd:pfam10300 384 PLEKFAARKVQRFKARTPadAVLVSPLLELIYFWNGFSRMGKKPLLTESVLKLIEKA---LKANPTSEaQEPDDKCLKQL 460

                  ....*....
gi 568928896  485 LKGLCLKYL 493
Cdd:pfam10300 461 LKGLCLRHL 469
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
457-553 1.03e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 50.38  E-value: 1.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896 457 EVITKAEEMLAMGPENEYSADddclVKLLKGLCLKYLGRIQEAEENFRSISANEKkikyDHYLIPNALLELALLFMEQGR 536
Cdd:COG1729   11 EAIAAFKAFLKRYPNSPLAPD----ALYWLGEAYYALGDYDEAAEAFEKLLKRYP----DSPKAPDALLKLGLSYLELGD 82
                         90
                 ....*....|....*..
gi 568928896 537 NEEAIKLLESAKQNYKN 553
Cdd:COG1729   83 YDKARATLEELIKKYPD 99
 
Name Accession Description Interval E-value
Iml2-TPR_39 pfam10300
Iml2/Tetratricopeptide repeat protein 39; This is a family of proteins conserved from fungi to ...
27-493 0e+00

Iml2/Tetratricopeptide repeat protein 39; This is a family of proteins conserved from fungi to humans, including fungal Inclusion body clearance protein Iml2 protein, animal tetratricopeptide repeat protein 39A/B/C (TT39A/B/C) and some uncharacterized proteins. Members of this family carry a tetratricopeptide repeat pfam07719 at their C terminus. This entry includes Iml2 and its paralogue-YKR018C from S. cerevisiae; Iml2 localizes to the cytoplasm and nucleus, and its expression is increased in response to DNA replication stress. It is found to be involved in lipid droplet-mediated inclusion body clearing after protein folding stress. In humans, TTC39A (also known as DEME6) is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. It is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive. TTC39B has been linked to lipid metabolism.


Pssm-ID: 463047 [Multi-domain]  Cd Length: 469  Bit Score: 632.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896   27 MTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQSLCQRHRRKSSMTDSFSNL 106
Cdd:pfam10300   1 LQALDLFLNNKFEEALELLKPWSKNSMYHALGYSVVAFIQAMLTFEPEDIQQASEALKEAEQVCQRFRKKAQVNESIQNT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  107 VHRptidQFTEEEIHAEVCYAECLLQRAALTFlQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYSKG---------- 176
Cdd:pfam10300  81 DTS----QLYEPGTHAEVCYAECLLLKAALTF-QDESLVSFIKGGYKLRKAYQIYKECLKLINDPQQTKRsspgdsslsh 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  177 ------ESHRHFEGGVKLGVGAFNLdalhtpmpltlqTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGATGHSFRAVLC 250
Cdd:pfam10300 156 ndnnqaEIDEFFESGVNLGFGIFNL------------MLSLLPPRILKLLEFIGFSGDREDGLRLLWEASKSPNIRAALA 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  251 VMLLLCYHTFLTFVLGT--GNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEAIKGNIDAAVRRFEECCEAQQHWKQFHH 328
Cdd:pfam10300 224 LLTLLFYYTGVRQVLGIpgGEGPLEEAEALLLPYRKRYPNGALWLFFEARIESLKGNLDEALELFEECIESQSEWKQVHH 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  329 MCYWELMWCFTYKGQWKMAYFYADLLSKENSWSKATYIYMKAAYLSMFGKEDYKPFG-DNEVELFRAVPGLKLKIAGKSL 407
Cdd:pfam10300 304 LCYWELMWCLVFLHNWKQAANYFLLLVKESSWSHALYTYFAAACLLMLYREEEAPAAkERAVELFREVPTLKQKIAGKSL 383
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  408 PTEKFAIRKSRRYLSPNP--ISLPIPALEMMYIWNGYAVIGKQPTLTDGMLEVITKAeemLAMGPENE-YSADDDCLVKL 484
Cdd:pfam10300 384 PLEKFAARKVQRFKARTPadAVLVSPLLELIYFWNGFSRMGKKPLLTESVLKLIEKA---LKANPTSEaQEPDDKCLKQL 460

                  ....*....
gi 568928896  485 LKGLCLKYL 493
Cdd:pfam10300 461 LKGLCLRHL 469
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
457-553 1.03e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 50.38  E-value: 1.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896 457 EVITKAEEMLAMGPENEYSADddclVKLLKGLCLKYLGRIQEAEENFRSISANEKkikyDHYLIPNALLELALLFMEQGR 536
Cdd:COG1729   11 EAIAAFKAFLKRYPNSPLAPD----ALYWLGEAYYALGDYDEAAEAFEKLLKRYP----DSPKAPDALLKLGLSYLELGD 82
                         90
                 ....*....|....*..
gi 568928896 537 NEEAIKLLESAKQNYKN 553
Cdd:COG1729   83 YDKARATLEELIKKYPD 99
TPR_12 pfam13424
Tetratricopeptide repeat;
478-553 9.15e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.92  E-value: 9.15e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568928896  478 DDCLVKLLKGLCLKYLGRIQEAEENF-RSISANEKKIKYDHYLIPNALLELALLFMEQGRNEEAIKLLESAKQNYKN 553
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLeKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
 
Name Accession Description Interval E-value
Iml2-TPR_39 pfam10300
Iml2/Tetratricopeptide repeat protein 39; This is a family of proteins conserved from fungi to ...
27-493 0e+00

Iml2/Tetratricopeptide repeat protein 39; This is a family of proteins conserved from fungi to humans, including fungal Inclusion body clearance protein Iml2 protein, animal tetratricopeptide repeat protein 39A/B/C (TT39A/B/C) and some uncharacterized proteins. Members of this family carry a tetratricopeptide repeat pfam07719 at their C terminus. This entry includes Iml2 and its paralogue-YKR018C from S. cerevisiae; Iml2 localizes to the cytoplasm and nucleus, and its expression is increased in response to DNA replication stress. It is found to be involved in lipid droplet-mediated inclusion body clearing after protein folding stress. In humans, TTC39A (also known as DEME6) is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. It is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive. TTC39B has been linked to lipid metabolism.


Pssm-ID: 463047 [Multi-domain]  Cd Length: 469  Bit Score: 632.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896   27 MTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQSLCQRHRRKSSMTDSFSNL 106
Cdd:pfam10300   1 LQALDLFLNNKFEEALELLKPWSKNSMYHALGYSVVAFIQAMLTFEPEDIQQASEALKEAEQVCQRFRKKAQVNESIQNT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  107 VHRptidQFTEEEIHAEVCYAECLLQRAALTFlQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYSKG---------- 176
Cdd:pfam10300  81 DTS----QLYEPGTHAEVCYAECLLLKAALTF-QDESLVSFIKGGYKLRKAYQIYKECLKLINDPQQTKRsspgdsslsh 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  177 ------ESHRHFEGGVKLGVGAFNLdalhtpmpltlqTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGATGHSFRAVLC 250
Cdd:pfam10300 156 ndnnqaEIDEFFESGVNLGFGIFNL------------MLSLLPPRILKLLEFIGFSGDREDGLRLLWEASKSPNIRAALA 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  251 VMLLLCYHTFLTFVLGT--GNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEAIKGNIDAAVRRFEECCEAQQHWKQFHH 328
Cdd:pfam10300 224 LLTLLFYYTGVRQVLGIpgGEGPLEEAEALLLPYRKRYPNGALWLFFEARIESLKGNLDEALELFEECIESQSEWKQVHH 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  329 MCYWELMWCFTYKGQWKMAYFYADLLSKENSWSKATYIYMKAAYLSMFGKEDYKPFG-DNEVELFRAVPGLKLKIAGKSL 407
Cdd:pfam10300 304 LCYWELMWCLVFLHNWKQAANYFLLLVKESSWSHALYTYFAAACLLMLYREEEAPAAkERAVELFREVPTLKQKIAGKSL 383
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896  408 PTEKFAIRKSRRYLSPNP--ISLPIPALEMMYIWNGYAVIGKQPTLTDGMLEVITKAeemLAMGPENE-YSADDDCLVKL 484
Cdd:pfam10300 384 PLEKFAARKVQRFKARTPadAVLVSPLLELIYFWNGFSRMGKKPLLTESVLKLIEKA---LKANPTSEaQEPDDKCLKQL 460

                  ....*....
gi 568928896  485 LKGLCLKYL 493
Cdd:pfam10300 461 LKGLCLRHL 469
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
457-553 1.03e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 50.38  E-value: 1.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896 457 EVITKAEEMLAMGPENEYSADddclVKLLKGLCLKYLGRIQEAEENFRSISANEKkikyDHYLIPNALLELALLFMEQGR 536
Cdd:COG1729   11 EAIAAFKAFLKRYPNSPLAPD----ALYWLGEAYYALGDYDEAAEAFEKLLKRYP----DSPKAPDALLKLGLSYLELGD 82
                         90
                 ....*....|....*..
gi 568928896 537 NEEAIKLLESAKQNYKN 553
Cdd:COG1729   83 YDKARATLEELIKKYPD 99
TPR_12 pfam13424
Tetratricopeptide repeat;
478-553 9.15e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.92  E-value: 9.15e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568928896  478 DDCLVKLLKGLCLKYLGRIQEAEENF-RSISANEKKIKYDHYLIPNALLELALLFMEQGRNEEAIKLLESAKQNYKN 553
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLeKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
457-545 1.14e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 47.18  E-value: 1.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928896 457 EVITKAEEMLAMGPENEYSAdddclVKLLKGLCLKYLGRIQEAEENFRSISAnekkikydHYLIPNALLELALLFMEQGR 536
Cdd:COG4700  142 EALETLEKLIAKNPDFKSSD-----AHLLYARALEALGDLEAAEAELEALAR--------RYSGPEARYRYAKFLARQGR 208

                 ....*....
gi 568928896 537 NEEAIKLLE 545
Cdd:COG4700  209 TAEAKELLE 217
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
484-555 3.76e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.86  E-value: 3.76e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568928896  484 LLKGLCLKYLGRIQEAEENFRSISANEKkikyDHYLIPNALLELALLFMEQGRNEEAIKLLESAKQNYKNYS 555
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFP----ESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
494-564 1.08e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.82  E-value: 1.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568928896 494 GRIQEAEENFRSISANEKkikyDHYLIPNALLELALLFMEQGRNEEAIKLLESAKQNYKNYSMESRTHFRI 564
Cdd:COG1729    7 GDYDEAIAAFKAFLKRYP----NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKL 73
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
487-547 1.17e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.90  E-value: 1.17e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568928896 487 GLCLKYLGRIQEAEENFRSISAnekkIKYDHyliPNALLELALLFMEQGRNEEAIKLLESA 547
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALA----LNPDF---AEAYLNLGEALRRLGRLEEAIAALRRA 172
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
487-550 1.47e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 1.47e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568928896 487 GLCLKYLGRIQEAEENFRSISANEKKikydhyliPNALLELALLFMEQGRNEEAIKLLESAKQN 550
Cdd:COG3063   33 GLLLLEQGRYDEAIALEKALKLDPNN--------AEALLNLAELLLELGDYDEALAYLERALEL 88
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
487-547 5.27e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.83  E-value: 5.27e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568928896 487 GLCLKYLGRIQEAEENFrsisanEKKIKYDHYLiPNALLELALLFMEQGRNEEAIKLLESA 547
Cdd:COG0457   49 GLAYLRLGRYEEALADY------EQALELDPDD-AEALNNLGLALQALGRYEEALEDYDKA 102
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
486-547 5.27e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.83  E-value: 5.27e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568928896 486 KGLCLKYLGRIQEAEENFrsisanEKKIKYDHYLiPNALLELALLFMEQGRNEEAIKLLESA 547
Cdd:COG0457   82 LGLALQALGRYEEALEDY------DKALELDPDD-AEALYNLGLALLELGRYDEAIEAYERA 136
TPR_6 pfam13174
Tetratricopeptide repeat;
523-553 9.40e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 33.98  E-value: 9.40e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 568928896  523 ALLELALLFMEQGRNEEAIKLLESAKQNYKN 553
Cdd:pfam13174   2 ALLKLALAYLELGDTDEAKEALERLIKKYPD 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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