|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
168-229 |
2.62e-27 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100071 Cd Length: 63 Bit Score: 105.38 E-value: 2.62e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568968638 168 DRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG-KAVIINKT 229
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
|
|
| R3H |
smart00393 |
Putative single-stranded nucleic acids-binding domain; |
152-229 |
1.00e-14 |
|
Putative single-stranded nucleic acids-binding domain;
Pssm-ID: 214647 Cd Length: 79 Bit Score: 70.02 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 152 IDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINdNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKA--VIINKT 229
Cdd:smart00393 1 ADFLPVTLDALSYRPRRREELIELELEIARFVK-STKESVELPPMNSYERKIVHELAEKYGLESESFGEGPKrrVVISKK 79
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
401-750 |
2.60e-11 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 67.73 E-value: 2.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 401 LPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQVLLPVSPPQQYNMAEDLSNPF--GQMSLSRQGSTEAADPSS 478
Cdd:pfam09606 124 LASLGRPQMPMGGAGFPSQMSRVGRMQPGGQAGGMMQPSSGQPGSGTPNQMGPNGGPGQGqaGGMNGGQQGPMGGQMPPQ 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 479 ALFQPPLISQHPQQASFIMASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQppQQIQVSYYPPGQYPNSNQQYRPLSHPV 558
Cdd:pfam09606 204 MGVPGMPGPADAGAQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQ--SQLGMGINQMQQMPQGVGGGAGQGGPG 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 559 AYSPQRGQQLPQASQQ--PGLQPMMSNQQQTAYQGMLGVQQPQNQGLLSNQRSSMGGQMQ---GLVVQYTPLPSYQVPVG 633
Cdd:pfam09606 282 QPMGPPGQQPGAMPNVmsIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVValgGLNHLETWNPGNFGGLG 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 634 SDSQNVVQP---SFQQPMLVPASQSVQG--GLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQ 708
Cdd:pfam09606 362 ANPMQRGQPgmmSSPSPVPGQQVRQVTPnqFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQMSQQPAQQR 441
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568968638 709 MSQQYSGVSPSG-PGVVVMqlNVPNGPQAPQNPSMVQWSHCKY 750
Cdd:pfam09606 442 TIGQDSPGGSLNtPGQSAV--NSPLNPQEEQLYREKYRQLTKY 482
|
|
| R3H |
pfam01424 |
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ... |
170-228 |
1.05e-10 |
|
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.
Pssm-ID: 460206 Cd Length: 60 Bit Score: 57.89 E-value: 1.05e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568968638 170 MMLLKLEQEILDFINDNNNQFKkFPQMTSYHRMLLHRVAAYFGMDHNV--DQTGKAVIINK 228
Cdd:pfam01424 1 EFLEQLAEKLAEFVKDTGKSLE-LPPMSSYERRIIHELAQKYGLESESegEEPNRRVVVYK 60
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
419-798 |
3.47e-06 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 51.21 E-value: 3.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 419 PVPALQPSPQPVQFSPSSCPQVLLPVSPPQQYNMAEDLSNPFgqmSLSRQGSTEAADPSSALFQP--PLISQHPQQASFI 496
Cdd:PHA03379 447 PVHDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGVV---QDGRPACAPVPAPAGPIVRPweASLSQVPGVAFAP 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 497 MAS---AGQPLPTSNYSTSSHAPPtqqvLPPQGYMQPP------QQIQVSYYPPGQYPNSNQQYRPLshPVAYSPQRGQQ 567
Cdd:PHA03379 524 VMPqpmPVEPVPVPTVALERPVCP----APPLIAMQGPgetsgiVRVRERWRPAPWTPNPPRSPSQM--SVRDRLARLRA 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 568 LPQASQQP-GLQPMMSNQQQTayqgmlgvQQPQNQGLLSNQRSSMGGQMQGL--VVQYTPLPSYQVPvgSDSQNVVQPSF 644
Cdd:PHA03379 598 EAQPYQASvEVQPPQLTQVSP--------QQPMEYPLEPEQQMFPGSPFSQVadVMRAGGVPAMQPQ--YFDLPLQQPIS 667
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 645 QQPMLVPASQSVQGGLPTGGVPVYYSMIPPAQQ--NGTSPSVGFLQPPGS-------EQYQMPQSPSPCSPPQMSQQYSG 715
Cdd:PHA03379 668 QGAPLAPLRASMGPVPPVPATQPQYFDIPLTEPinQGASAAHFLPQQPMEgplvperWMFQGATLSQSVRPGVAQSQYFD 747
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 716 VSPSGPgvvvMQLNVPNGPQAPQNPSMVQWshckyysVEQRGQKPGDLYSPdGSPQANAQMGSSPVTSPTQSPAPSPVTS 795
Cdd:PHA03379 748 LPLTQP----INHGAPAAHFLHQPPMEGPW-------VPEQWMFQGAPPSQ-GTDVVQHQLDALGYVLHVLNHPGVPVSP 815
|
...
gi 568968638 796 LSN 798
Cdd:PHA03379 816 AVN 818
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
456-625 |
1.48e-04 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 45.57 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 456 LSNPFGQMSLSRQGSTEAADPSSALFQPPLISQHPQQASfimasAGQPLptsNYstsshaPPTQQVLPPQGYMQPPQQIQ 535
Cdd:TIGR01628 371 LQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQF-----NGQPL---GW------PRMSMMPTPMGPGGPLRPNG 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 536 VSYYPPGQYPNSNQQYRPLSHPVA---YSPQ-RGQQLPQASQQPGLQPMMSNQQQTAYQgMLGVQQPQnqgllsNQRSSM 611
Cdd:TIGR01628 437 LAPMNAVRAPSRNAQNAAQKPPMQpvmYPPNyQSLPLSQDLPQPQSTASQGGQNKKLAQ-VLASATPQ------MQKQVL 509
|
170
....*....|....
gi 568968638 612 GGQMQGLVVQYTPL 625
Cdd:TIGR01628 510 GERLFPLVEAIEPA 523
|
|
| Amelin |
smart00817 |
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin ... |
467-602 |
5.77e-03 |
|
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralisation. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is though to have a role in determining the prismatic structure of growing enamel crystals.
Pssm-ID: 214832 [Multi-domain] Cd Length: 411 Bit Score: 40.26 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 467 RQGSTEAADPSSALFQPPLISQHPQQAsfimasagqPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPN 546
Cdd:smart00817 82 REHETQQYEYSLPVHPPPLPSQPSLQP---------QQPGLKPFLQPTALPTNQATPQKNGPQPPMHLGQPPLQQAELPM 152
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568968638 547 SNQQYRPLSHP-------VAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQG 602
Cdd:smart00817 153 IPPQVAPSDKPpqtelplYDFADPQNPLLFQIAHLMSRGPMPQNKQQHLYPGLFYMSYGANQL 215
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| R3H_encore_like |
cd02642 |
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
168-229 |
2.62e-27 |
|
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100071 Cd Length: 63 Bit Score: 105.38 E-value: 2.62e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568968638 168 DRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG-KAVIINKT 229
Cdd:cd02642 1 DRLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSGgKCVIVNKT 63
|
|
| R3H |
smart00393 |
Putative single-stranded nucleic acids-binding domain; |
152-229 |
1.00e-14 |
|
Putative single-stranded nucleic acids-binding domain;
Pssm-ID: 214647 Cd Length: 79 Bit Score: 70.02 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 152 IDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINdNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKA--VIINKT 229
Cdd:smart00393 1 ADFLPVTLDALSYRPRRREELIELELEIARFVK-STKESVELPPMNSYERKIVHELAEKYGLESESFGEGPKrrVVISKK 79
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
401-750 |
2.60e-11 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 67.73 E-value: 2.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 401 LPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQVLLPVSPPQQYNMAEDLSNPF--GQMSLSRQGSTEAADPSS 478
Cdd:pfam09606 124 LASLGRPQMPMGGAGFPSQMSRVGRMQPGGQAGGMMQPSSGQPGSGTPNQMGPNGGPGQGqaGGMNGGQQGPMGGQMPPQ 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 479 ALFQPPLISQHPQQASFIMASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQppQQIQVSYYPPGQYPNSNQQYRPLSHPV 558
Cdd:pfam09606 204 MGVPGMPGPADAGAQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQ--SQLGMGINQMQQMPQGVGGGAGQGGPG 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 559 AYSPQRGQQLPQASQQ--PGLQPMMSNQQQTAYQGMLGVQQPQNQGLLSNQRSSMGGQMQ---GLVVQYTPLPSYQVPVG 633
Cdd:pfam09606 282 QPMGPPGQQPGAMPNVmsIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVValgGLNHLETWNPGNFGGLG 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 634 SDSQNVVQP---SFQQPMLVPASQSVQG--GLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQ 708
Cdd:pfam09606 362 ANPMQRGQPgmmSSPSPVPGQQVRQVTPnqFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQMSQQPAQQR 441
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568968638 709 MSQQYSGVSPSG-PGVVVMqlNVPNGPQAPQNPSMVQWSHCKY 750
Cdd:pfam09606 442 TIGQDSPGGSLNtPGQSAV--NSPLNPQEEQLYREKYRQLTKY 482
|
|
| R3H |
cd02325 |
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most ... |
172-228 |
3.67e-11 |
|
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Pssm-ID: 100064 Cd Length: 59 Bit Score: 59.16 E-value: 3.67e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 568968638 172 LLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG--KAVIINK 228
Cdd:cd02325 1 REEREEELEAFAKDAAGKSLELPPMNSYERKLIHDLAEYYGLKSESEGEGpnRRVVITK 59
|
|
| R3H |
pfam01424 |
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ... |
170-228 |
1.05e-10 |
|
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.
Pssm-ID: 460206 Cd Length: 60 Bit Score: 57.89 E-value: 1.05e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568968638 170 MMLLKLEQEILDFINDNNNQFKkFPQMTSYHRMLLHRVAAYFGMDHNV--DQTGKAVIINK 228
Cdd:pfam01424 1 EFLEQLAEKLAEFVKDTGKSLE-LPPMSSYERRIIHELAQKYGLESESegEEPNRRVVVYK 60
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
421-649 |
1.13e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 55.81 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 421 PALQPSPQPVQFSPSSCPQVLLPVSPPQQ-----------YNMAEDLSNPFGQMSLSRQGSTEAADPSSALFQPPLISQH 489
Cdd:pfam09770 107 PAARAAQSSAQPPASSLPQYQYASQQSQQpskpvrtgyekYKEPEPIPDLQVDASLWGVAPKKAAAPAPAPQPAAQPASL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 490 PQQASFIM------------ASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQvsyyPPGQYPNSNQQYRPLSHP 557
Cdd:pfam09770 187 PAPSRKMMsleeveaamraqAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ----QPQQQPQQPQQHPGQGHP 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 558 VAYspqrgQQLPQASQQPGLQPMMSNQQQTAYQGMLGV-QQP----QNQGLLSNQRSSMGGQMQGlVVQYTPLPSYQVPV 632
Cdd:pfam09770 263 VTI-----LQRPQSPQPDPAQPSIQPQAQQFHQQPPPVpVQPtqilQNPNRLSAARVGYPQNPQP-GVQPAPAHQAHRQQ 336
|
250
....*....|....*..
gi 568968638 633 GSDSQNVVQPSFQQPML 649
Cdd:pfam09770 337 GSFGRQAPIITHPQQLA 353
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
419-798 |
3.47e-06 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 51.21 E-value: 3.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 419 PVPALQPSPQPVQFSPSSCPQVLLPVSPPQQYNMAEDLSNPFgqmSLSRQGSTEAADPSSALFQP--PLISQHPQQASFI 496
Cdd:PHA03379 447 PVHDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGVV---QDGRPACAPVPAPAGPIVRPweASLSQVPGVAFAP 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 497 MAS---AGQPLPTSNYSTSSHAPPtqqvLPPQGYMQPP------QQIQVSYYPPGQYPNSNQQYRPLshPVAYSPQRGQQ 567
Cdd:PHA03379 524 VMPqpmPVEPVPVPTVALERPVCP----APPLIAMQGPgetsgiVRVRERWRPAPWTPNPPRSPSQM--SVRDRLARLRA 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 568 LPQASQQP-GLQPMMSNQQQTayqgmlgvQQPQNQGLLSNQRSSMGGQMQGL--VVQYTPLPSYQVPvgSDSQNVVQPSF 644
Cdd:PHA03379 598 EAQPYQASvEVQPPQLTQVSP--------QQPMEYPLEPEQQMFPGSPFSQVadVMRAGGVPAMQPQ--YFDLPLQQPIS 667
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 645 QQPMLVPASQSVQGGLPTGGVPVYYSMIPPAQQ--NGTSPSVGFLQPPGS-------EQYQMPQSPSPCSPPQMSQQYSG 715
Cdd:PHA03379 668 QGAPLAPLRASMGPVPPVPATQPQYFDIPLTEPinQGASAAHFLPQQPMEgplvperWMFQGATLSQSVRPGVAQSQYFD 747
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 716 VSPSGPgvvvMQLNVPNGPQAPQNPSMVQWshckyysVEQRGQKPGDLYSPdGSPQANAQMGSSPVTSPTQSPAPSPVTS 795
Cdd:PHA03379 748 LPLTQP----INHGAPAAHFLHQPPMEGPW-------VPEQWMFQGAPPSQ-GTDVVQHQLDALGYVLHVLNHPGVPVSP 815
|
...
gi 568968638 796 LSN 798
Cdd:PHA03379 816 AVN 818
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
399-575 |
1.00e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 49.70 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 399 PALPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQVLLPVSPPQQYNMAEDLSNPFGQMSLSRQGSTEAADPSS 478
Cdd:PRK10263 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 479 AlfQPPLISQHPQQASFIMASAGQPlPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYpnsnQQYRPLSHPV 558
Cdd:PRK10263 416 A--QQPYYAPAPEQPAQQPYYAPAP-EQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLY----QQPQPVEQQP 488
|
170
....*....|....*..
gi 568968638 559 AYSPQRGQQLPQASQQP 575
Cdd:PRK10263 489 VVEPEPVVEETKPARPP 505
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
392-792 |
6.28e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 47.07 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 392 QQQQQQLPALPPTPQHQPPlnnhmisqPVPALQPSPQPVQFSPSSCPQVLLPVSPP--QQYNMAEDLSNPFGQMSLSRQG 469
Cdd:pfam03154 170 QPPVLQAQSGAASPPSPPP--------PGTTQAATAGPTPSAPSVPPQGSPATSQPpnQTQSTAAPHTLIQQTPTLHPQR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 470 STEAADPSSALFQPPLISQHPQQA--SFIMASAGQPLPTSNYSTSSHAPptqQVLPPQGYMQPPQQIQvSYYPPGQYPNS 547
Cdd:pfam03154 242 LPSPHPPLQPMTQPPPPSQVSPQPlpQPSLHGQMPPMPHSLQTGPSHMQ---HPVPPQPFPLTPQSSQ-SQVPPGPSPAA 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 548 NQQYRPLSHPVAYSPQRGQQLPQASQQPGLQPM-MSNQQQTAYQGMLGVQQPQNQGLLSNQRSSMGGQMQGLVvqytPLP 626
Cdd:pfam03154 318 PGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLsMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNL----PPP 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 627 SYQVPVGSDSQNVVQPSFQQPM-LVPASQSVQGglptggvpvyysmiPPAQQNGTSPSVGFlqPPGSEQYQMPQSPSPCS 705
Cdd:pfam03154 394 PALKPLSSLSTHHPPSAHPPPLqLMPQSQQLPP--------------PPAQPPVLTQSQSL--PPPAASHPPTSGLHQVP 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 706 PPQMSQQYSGVSPSGPGVVvmqlnVPNGPQAPQNPSMVQWSHCKYYSVEQRGQKPGDLYSP------DGSPQANAQMGSS 779
Cdd:pfam03154 458 SQSPFPQHPFVPGGPPPIT-----PPSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPlppvqiKEEALDEAEEPES 532
|
410
....*....|...
gi 568968638 780 PvTSPTQSPAPSP 792
Cdd:pfam03154 533 P-PPPPRSPSPEP 544
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
307-569 |
7.08e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.24 E-value: 7.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 307 PRPWSS----TDSDGSVRSMRPPVTKASSfsgisilTRGDSIGSSKGGSAGRLSRPGMALGAPEVC---NQVTSPQSVRG 379
Cdd:PHA03247 2712 PHALVSatplPPGPAAARQASPALPAAPA-------PPAVPAGPATPGGPARPARPPTTAGPPAPAppaAPAAGPPRRLT 2784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 380 LLPCTAQQQQQQQQQQQQLPALPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQvllPVSPPQQYNMAEDLSNP 459
Cdd:PHA03247 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG---PPPPSLPLGGSVAPGGD 2861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 460 FGQMSLSRQGSTEAADPS----SALFQPPLisqHPQQASFIMASAGQPLPTSnySTSSHAPPTQQVLPPQGYMQPPQQIQ 535
Cdd:PHA03247 2862 VRRRPPSRSPAAKPAAPArppvRRLARPAV---SRSTESFALPPDQPERPPQ--PQAPPPPQPQPQPPPPPQPQPPPPPP 2936
|
250 260 270
....*....|....*....|....*....|....
gi 568968638 536 VSYYPPGQyPNSNQQYRPLSHPVAYSPQRGQQLP 569
Cdd:PHA03247 2937 PRPQPPLA-PTTDPAGAGEPSGAVPQPWLGALVP 2969
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
476-627 |
8.83e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.62 E-value: 8.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 476 PSSALFQPPLI-SQHPQQasfimasagQPLPTSNYSTSSH-APPTQQVLPPQGYMQPPQQiqvsYYPPGQYPNSNQQYRP 553
Cdd:PRK10263 740 PHEPLFTPIVEpVQQPQQ---------PVAPQQQYQQPQQpVAPQPQYQQPQQPVAPQPQ----YQQPQQPVAPQPQYQQ 806
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568968638 554 LSHPVAYSPQRGQ-QLPQASQQPGLQPmmsnQQQTAyqgmlgvqqPQNQGLLSNQRSSMGGQMQGLVVQYTPLPS 627
Cdd:PRK10263 807 PQQPVAPQPQYQQpQQPVAPQPQYQQP----QQPVA---------PQPQDTLLHPLLMRNGDSRPLHKPTTPLPS 868
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
456-625 |
1.48e-04 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 45.57 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 456 LSNPFGQMSLSRQGSTEAADPSSALFQPPLISQHPQQASfimasAGQPLptsNYstsshaPPTQQVLPPQGYMQPPQQIQ 535
Cdd:TIGR01628 371 LQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQF-----NGQPL---GW------PRMSMMPTPMGPGGPLRPNG 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 536 VSYYPPGQYPNSNQQYRPLSHPVA---YSPQ-RGQQLPQASQQPGLQPMMSNQQQTAYQgMLGVQQPQnqgllsNQRSSM 611
Cdd:TIGR01628 437 LAPMNAVRAPSRNAQNAAQKPPMQpvmYPPNyQSLPLSQDLPQPQSTASQGGQNKKLAQ-VLASATPQ------MQKQVL 509
|
170
....*....|....
gi 568968638 612 GGQMQGLVVQYTPL 625
Cdd:TIGR01628 510 GERLFPLVEAIEPA 523
|
|
| PHA03377 |
PHA03377 |
EBNA-3C; Provisional |
399-686 |
8.17e-04 |
|
EBNA-3C; Provisional
Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 43.50 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 399 PALPPTPQHQPPLNNHMISQPVPALQpsPQPVQFSPSScpqvllPVSPPQQYNMAEDLS--NPFGQMSLSRQGSTEAADP 476
Cdd:PHA03377 672 PATQSTPPRPSWLPSVFVLPSVDAGR--AQPSEESHLS------SMSPTQPISHEEQPRyeDPDDPLDLSLHPDQAPPPS 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 477 SSALFQPPLISQHPQqasfimasagqplptSNYSTSSHAPPTQqvLPPQGYMQPP-QQIQVSYYPPGQYP-NSNQQYRPL 554
Cdd:PHA03377 744 HQAPYSGHEEPQAQQ---------------APYPGYWEPRPPQ--APYLGYQEPQaQGVQVSSYPGYAGPwGLRAQHPRY 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 555 SHPVAYSPQR----GQQLPQASQQPGLQPmmsnqqqtAYQGMLGVQQPQNQGLLSNQRSSMGGQMQGLVVQYTPLPsyQV 630
Cdd:PHA03377 807 RHSWAYWSQYpghgHPQGPWAPRPPHLPP--------QWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQLPYS--QT 876
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 568968638 631 PVGSDSQNVVQPSFQQPMlvpasQSVQGGLPTGGVPVYYSMIPPAQQNGTS-PSVGF 686
Cdd:PHA03377 877 LVSSSAPSWSSPQPRAPI-----RPIPTRFPPPPMPLQDSMAVGCDSSGTAcPSMPF 928
|
|
| G_path_suppress |
pfam15991 |
G-protein pathway suppressor; This family of proteins inhibits G-protein- and ... |
422-581 |
1.11e-03 |
|
G-protein pathway suppressor; This family of proteins inhibits G-protein- and mitogen-activated protein kinase-mediated signal transduction.
Pssm-ID: 464961 [Multi-domain] Cd Length: 272 Bit Score: 42.22 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 422 ALQPSPQPVQFSPSS-CPQVLLPVSPPQQYNMAEDLSNPFGQMSLSRQGSTEAADPSSALFQPPLISQHPQQASFIMASA 500
Cdd:pfam15991 103 ALQQAAAQVFLPQLSmQGQPHHQQHPGPQVGVLKRTRSPSPPVQQQAYYKQPAFSPGYAEHGQQKHDDGRRGYDVARFGS 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 501 GQPLPTSNYSTSSHAPPTQQVLPP-QGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAY---SPQRGQQLPQA--SQQ 574
Cdd:pfam15991 183 WNKSTAQYPPSGQLFYPTHQYLPPpQTQGQADARLQTIYPQPGYALPLQQQYEHANQPSPFvssSPLKQMQSPKAgpGPQ 262
|
....*..
gi 568968638 575 PGLQPMM 581
Cdd:pfam15991 263 PMQLSVL 269
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
470-669 |
1.96e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 42.38 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 470 STEAADPSSALFQPPLISQHPQqasfimaSAGQPLPTSNYSTSSHAPPtqqvlpPQGYMQPPQ--QIQVSYYPPGQYPNS 547
Cdd:PRK10263 336 PVEPVTQTPPVASVDVPPAQPT-------VAWQPVPGPQTGEPVIAPA------PEGYPQQSQyaQPAVQYNEPLQQPVQ 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 548 NQQyrPLSHPVAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQgLLSNQRSsmggqmqglvvqYTPLPS 627
Cdd:PRK10263 403 PQQ--PYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQS-TFAPQST------------YQTEQT 467
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568968638 628 YQVPVGSDSQNVVQPSFQQPMLVPASQSVQGGLPTGGvPVYY 669
Cdd:PRK10263 468 YQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARP-PLYY 508
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
563-693 |
3.67e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 40.95 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 563 QRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQ----PQNQGLLSNQRSSMGGQMQGLVVQYTPLPSYQVPvGSDSQN 638
Cdd:TIGR01628 374 QFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQfngqPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAP-SRNAQN 452
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568968638 639 VVQPSFQQPMlvPASQSVQGGLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPPGSE 693
Cdd:TIGR01628 453 AAQKPPMQPV--MYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQ 505
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
306-693 |
3.95e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.22 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 306 EPRPWSSTDSDGSVRSMrPPVTKASSfsgISILTRGDSIGSSKGGSAGRLSRPGMAL---GAPEvcnqvtsPQSVRGLLP 382
Cdd:PRK10263 536 EPEPIKSSLKAPSVAAV-PPVEAAAA---VSPLASGVKKATLATGAAATVAAPVFSLansGGPR-------PQVKEGIGP 604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 383 ctaqqqqqqqqqqqqlpALPPTPQHQPPLNNHMISQPV--PALQPSPQPVQFSPSSCPQVLLPVSPPQQYNMAED-LSNP 459
Cdd:PRK10263 605 -----------------QLPRPKRIRVPTRRELASYGIklPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDeLARQ 667
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 460 FGQMSLSRQGST-------EAADPSSALfQPPLISQ--HPQQASFimaSAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQP 530
Cdd:PRK10263 668 FAQTQQQRYGEQyqhdvpvNAEDADAAA-EAELARQfaQTQQQRY---SGEQPAGANPFSLDDFEFSPMKALLDDGPHEP 743
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 531 pqqiqvsYYPPGQYPNSNQQYRPLSHPVAYSPQRgqqlPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQGLLSNQrss 610
Cdd:PRK10263 744 -------LFTPIVEPVQQPQQPVAPQQQYQQPQQ----PVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQ--- 809
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 611 mggqmqglvvQYTPLPSYQVPvgsDSQNVVQPSFQQPMLVPASQSVQgglptggvpvyySMIPP-AQQNGTS-------- 681
Cdd:PRK10263 810 ----------PVAPQPQYQQP---QQPVAPQPQYQQPQQPVAPQPQD------------TLLHPlLMRNGDSrplhkptt 864
|
410
....*....|....
gi 568968638 682 --PSVGFLQPPGSE 693
Cdd:PRK10263 865 plPSLDLLTPPPSE 878
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
362-575 |
5.66e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 40.72 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 362 LGAPEVCNQVTSPQSVRGLLPCTAQQQQQQQQQQQQLPALPPTPQHQPPLNN-HMISQPVPALQPSPQPVQfspsscpqv 440
Cdd:PRK14948 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKAsPPIPVPAEPTEPSPTPPA--------- 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 441 lLPVSPPQQYNMAE-------DLSNPFGQMSLSRQGSTEAADPSSALFQ------------PPLIS-------QHPQQAS 494
Cdd:PRK14948 431 -NAANAPPSLNLEElwqqilaKLELPSTRMLLSQQAELVSLDSNRAVIAvspnwlgmvqsrKPLLEqafakvlGRSIKLN 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 495 FIMASAGQPlptsnySTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQASQQ 574
Cdd:PRK14948 510 LESQSGSAS------NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEE 583
|
.
gi 568968638 575 P 575
Cdd:PRK14948 584 P 584
|
|
| Amelin |
smart00817 |
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin ... |
467-602 |
5.77e-03 |
|
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralisation. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is though to have a role in determining the prismatic structure of growing enamel crystals.
Pssm-ID: 214832 [Multi-domain] Cd Length: 411 Bit Score: 40.26 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 467 RQGSTEAADPSSALFQPPLISQHPQQAsfimasagqPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPN 546
Cdd:smart00817 82 REHETQQYEYSLPVHPPPLPSQPSLQP---------QQPGLKPFLQPTALPTNQATPQKNGPQPPMHLGQPPLQQAELPM 152
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568968638 547 SNQQYRPLSHP-------VAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQG 602
Cdd:smart00817 153 IPPQVAPSDKPpqtelplYDFADPQNPLLFQIAHLMSRGPMPQNKQQHLYPGLFYMSYGANQL 215
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
462-690 |
6.87e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 40.40 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 462 QMSLSRQGSTEAADPSSALfQPPLISQHPQQASFIMASAGQPLPTS--NYSTSSHAPPTQ--QVL---PPQGYMQPPQQI 534
Cdd:pfam09770 99 QVRFNRQQPAARAAQSSAQ-PPASSLPQYQYASQQSQQPSKPVRTGyeKYKEPEPIPDLQvdASLwgvAPKKAAAPAPAP 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 535 QVSYYPPGQYPNSNQ---------QYRplshpvAYSPQRGQQLPQASQQP--GLQPMMSNQQQTAYQGMLGVQQPQNQGL 603
Cdd:pfam09770 178 QPAAQPASLPAPSRKmmsleeveaAMR------AQAKKPAQQPAPAPAQPpaAPPAQQAQQQQQFPPQIQQQQQPQQQPQ 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968638 604 LSNQRSSMGGQMQGL---------VVQYTPLPSYQVPVGSDSQNVVQPS--FQQPMLVPASQSVQGGLPTGGVPVyysmi 672
Cdd:pfam09770 252 QPQQHPGQGHPVTILqrpqspqpdPAQPSIQPQAQQFHQQPPPVPVQPTqiLQNPNRLSAARVGYPQNPQPGVQP----- 326
|
250
....*....|....*...
gi 568968638 673 PPAQQNGTSPSVGFLQPP 690
Cdd:pfam09770 327 APAHQAHRQQGSFGRQAP 344
|
|
|