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Conserved domains on  [gi|568968700|ref|XP_006514255|]
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KIF-binding protein isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KBP_C super family cl18610
KIF-1 binding protein C terminal; This family of proteins is found in bacteria and eukaryotes. ...
 243-325 4.22e-33

KIF-1 binding protein C terminal; This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.


The actual alignment was detected with superfamily member pfam12309:

Pssm-ID: 463528  Cd Length: 362  Bit Score: 125.47  E-value: 4.22e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968700  243 MEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTGKIPATEDTPEVEGDVPELYHQRKGEIARCWIKYCLTLMQNAQ 322
Cdd:pfam12309   1 IDWALNAATLSQYYIEKDRFGQARHCLAAASVILDEYEEELGEKETEESEKEKRETFKHRSADIARCWAKYGLTLLQASK 80


                  ...
gi 568968700  323 LSM 325
Cdd:pfam12309  81 ERL 83
 
Name Accession Description Interval E-value
KBP_C pfam12309
KIF-1 binding protein C terminal; This family of proteins is found in bacteria and eukaryotes. ...
 243-325 4.22e-33

KIF-1 binding protein C terminal; This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.


Pssm-ID: 463528  Cd Length: 362  Bit Score: 125.47  E-value: 4.22e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968700  243 MEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTGKIPATEDTPEVEGDVPELYHQRKGEIARCWIKYCLTLMQNAQ 322
Cdd:pfam12309   1 IDWALNAATLSQYYIEKDRFGQARHCLAAASVILDEYEEELGEKETEESEKEKRETFKHRSADIARCWAKYGLTLLQASK 80


                  ...
gi 568968700  323 LSM 325
Cdd:pfam12309  81 ERL 83
 
Name Accession Description Interval E-value
KBP_C pfam12309
KIF-1 binding protein C terminal; This family of proteins is found in bacteria and eukaryotes. ...
 243-325 4.22e-33

KIF-1 binding protein C terminal; This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.


Pssm-ID: 463528  Cd Length: 362  Bit Score: 125.47  E-value: 4.22e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968700  243 MEWAINAATLSQFYINKLCFMEARHCLSAANVIFGQTGKIPATEDTPEVEGDVPELYHQRKGEIARCWIKYCLTLMQNAQ 322
Cdd:pfam12309   1 IDWALNAATLSQYYIEKDRFGQARHCLAAASVILDEYEEELGEKETEESEKEKRETFKHRSADIARCWAKYGLTLLQASK 80


                  ...
gi 568968700  323 LSM 325
Cdd:pfam12309  81 ERL 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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