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Conserved domains on  [gi|569006513|ref|XP_006526796|]
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amino acid transporter heavy chain SLC3A2 isoform X2 [Mus musculus]

Protein Classification

alpha-amylase family protein( domain architecture ID 1562432)

alpha-amylase family protein may catalyze the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AmyAc_family super family cl38930
Alpha amylase catalytic domain family; The Alpha-amylase family comprises the largest family ...
1-206 1.05e-60

Alpha amylase catalytic domain family; The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


The actual alignment was detected with superfamily member cd11345:

Pssm-ID: 476817 [Multi-domain]  Cd Length: 326  Bit Score: 196.12  E-value: 1.05e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513   1 MKEALSSWLQDGVDGFQFRDVGKLMNAPLYlaEWQNITKNLSE-----DRLLIAGTESSDLQQIVNIL-ESTSDLLLTSS 74
Cdd:cd11345  122 VKEALEFWLNQGVDGIQVSDLENVASSASS--EWSNLTAIVQKntdgkKRVLIGVTSSSSLSEISLLLnTSGVDLLLSGA 199
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513  75 YLSNSTFTGERTesLVTRFLNATGSQWCSWSVSQAGL--LADFIPDHLLRLYQLLLFTLPGTPVFSYGDELGLQGALPGQ 152
Cdd:cd11345  200 LLSASNRPSFGT--LVTQLLSTTGQRSLAWGIGARQGghLASLVPAALVRLYQLLLFTLPGTPVFNYGDEIGLQDAQGKS 277
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 569006513 153 PAKAPLMPWNEssifhIPRPVSLNMTVKGQNEDPGSLLTQFRRLSDLRGKERSL 206
Cdd:cd11345  278 PKMLRPNNEPE-----IAEEVNANMTAKAQKEDRGSLRSFFRSLSDLRGKERSL 326
 
Name Accession Description Interval E-value
AmyAc_SLC3A2 cd11345
Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins; 4F2 ...
1-206 1.05e-60

Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins; 4F2 cell-surface antigen heavy chain (hc) is a protein that in humans is encoded by the SLC3A2 gene. 4F2hc is a multifunctional type II membrane glycoprotein involved in amino acid transport and cell fusion, adhesion, and transformation. It is related to bacterial alpha-glycosidases, but lacks alpha-glycosidase activity. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200483 [Multi-domain]  Cd Length: 326  Bit Score: 196.12  E-value: 1.05e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513   1 MKEALSSWLQDGVDGFQFRDVGKLMNAPLYlaEWQNITKNLSE-----DRLLIAGTESSDLQQIVNIL-ESTSDLLLTSS 74
Cdd:cd11345  122 VKEALEFWLNQGVDGIQVSDLENVASSASS--EWSNLTAIVQKntdgkKRVLIGVTSSSSLSEISLLLnTSGVDLLLSGA 199
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513  75 YLSNSTFTGERTesLVTRFLNATGSQWCSWSVSQAGL--LADFIPDHLLRLYQLLLFTLPGTPVFSYGDELGLQGALPGQ 152
Cdd:cd11345  200 LLSASNRPSFGT--LVTQLLSTTGQRSLAWGIGARQGghLASLVPAALVRLYQLLLFTLPGTPVFNYGDEIGLQDAQGKS 277
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 569006513 153 PAKAPLMPWNEssifhIPRPVSLNMTVKGQNEDPGSLLTQFRRLSDLRGKERSL 206
Cdd:cd11345  278 PKMLRPNNEPE-----IAEEVNANMTAKAQKEDRGSLRSFFRSLSDLRGKERSL 326
AmyA COG0366
Glycosidase/amylase (phosphorylase) [Carbohydrate transport and metabolism];
1-200 2.57e-11

Glycosidase/amylase (phosphorylase) [Carbohydrate transport and metabolism];


Pssm-ID: 440135 [Multi-domain]  Cd Length: 413  Bit Score: 63.73  E-value: 2.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513   1 MKEALSSWLQDGVDGFQ-------FRDVGKLMNAP---LYLAEWQNITKNLSEDRLLIA---GTESSDLQQIV--NILES 65
Cdd:COG0366  181 LLDVLRFWLDRGVDGFRldavnhlDKDEGLPENLPevhEFLRELRAAVDEYYPDFFLVGeawVDPPEDVARYFggDELDM 260
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513  66 TSD-LLLTSSYLSNSTFTGERTESLVTRFLNAT--GSQWCSW--------SVSQAG---------LLADFIpdhllrlyq 125
Cdd:COG0366  261 AFNfPLMPALWDALAPEDAAELRDALAQTPALYpeGGWWANFlrnhdqprLASRLGgdydrrrakLAAALL--------- 331
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 126 lllFTLPGTPVFSYGDELGLQGALPGQPAK-----APlMPWNES-----SIFHIPRPVSLNM-TVKGQNEDPGSLLTQFR 194
Cdd:COG0366  332 ---LTLPGTPYIYYGDEIGMTGDKLQDPEGrdgcrTP-MPWSDDrnagfSTGWLPVPPNYKAiNVEAQEADPDSLLNFYR 407

                 ....*.
gi 569006513 195 RLSDLR 200
Cdd:COG0366  408 KLIALR 413
PRK10785 PRK10785
maltodextrin glucosidase; Provisional
129-282 2.22e-08

maltodextrin glucosidase; Provisional


Pssm-ID: 236759 [Multi-domain]  Cd Length: 598  Bit Score: 55.01  E-value: 2.22e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 129 FTLPGTPVFSYGDELGLQGAlpGQPAKAPLMPWNESsifhiprpvslnmtvkgqnEDPGSLLTQFRRLSDLRGKERSLLH 208
Cdd:PRK10785 470 FTWPGVPCIYYGDEVGLDGG--NDPFCRKPFPWDEA-------------------KQDGALLALYQRMIALRKKSQALRR 528
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569006513 209 GDFHALSSSPDLFSYIRHWDQnERYLVVLNFRDSGRsarlgasnlpagISLPASAkllLSTDSARQSREEDTSL 282
Cdd:PRK10785 529 GGCQVLYAEGNVVVFARVLQQ-QRVLVAINRGEACE------------VVLPASP---LLNVAQWQRKEGHGDL 586
 
Name Accession Description Interval E-value
AmyAc_SLC3A2 cd11345
Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins; 4F2 ...
1-206 1.05e-60

Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins; 4F2 cell-surface antigen heavy chain (hc) is a protein that in humans is encoded by the SLC3A2 gene. 4F2hc is a multifunctional type II membrane glycoprotein involved in amino acid transport and cell fusion, adhesion, and transformation. It is related to bacterial alpha-glycosidases, but lacks alpha-glycosidase activity. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200483 [Multi-domain]  Cd Length: 326  Bit Score: 196.12  E-value: 1.05e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513   1 MKEALSSWLQDGVDGFQFRDVGKLMNAPLYlaEWQNITKNLSE-----DRLLIAGTESSDLQQIVNIL-ESTSDLLLTSS 74
Cdd:cd11345  122 VKEALEFWLNQGVDGIQVSDLENVASSASS--EWSNLTAIVQKntdgkKRVLIGVTSSSSLSEISLLLnTSGVDLLLSGA 199
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513  75 YLSNSTFTGERTesLVTRFLNATGSQWCSWSVSQAGL--LADFIPDHLLRLYQLLLFTLPGTPVFSYGDELGLQGALPGQ 152
Cdd:cd11345  200 LLSASNRPSFGT--LVTQLLSTTGQRSLAWGIGARQGghLASLVPAALVRLYQLLLFTLPGTPVFNYGDEIGLQDAQGKS 277
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 569006513 153 PAKAPLMPWNEssifhIPRPVSLNMTVKGQNEDPGSLLTQFRRLSDLRGKERSL 206
Cdd:cd11345  278 PKMLRPNNEPE-----IAEEVNANMTAKAQKEDRGSLRSFFRSLSDLRGKERSL 326
AmyA COG0366
Glycosidase/amylase (phosphorylase) [Carbohydrate transport and metabolism];
1-200 2.57e-11

Glycosidase/amylase (phosphorylase) [Carbohydrate transport and metabolism];


Pssm-ID: 440135 [Multi-domain]  Cd Length: 413  Bit Score: 63.73  E-value: 2.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513   1 MKEALSSWLQDGVDGFQ-------FRDVGKLMNAP---LYLAEWQNITKNLSEDRLLIA---GTESSDLQQIV--NILES 65
Cdd:COG0366  181 LLDVLRFWLDRGVDGFRldavnhlDKDEGLPENLPevhEFLRELRAAVDEYYPDFFLVGeawVDPPEDVARYFggDELDM 260
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513  66 TSD-LLLTSSYLSNSTFTGERTESLVTRFLNAT--GSQWCSW--------SVSQAG---------LLADFIpdhllrlyq 125
Cdd:COG0366  261 AFNfPLMPALWDALAPEDAAELRDALAQTPALYpeGGWWANFlrnhdqprLASRLGgdydrrrakLAAALL--------- 331
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 126 lllFTLPGTPVFSYGDELGLQGALPGQPAK-----APlMPWNES-----SIFHIPRPVSLNM-TVKGQNEDPGSLLTQFR 194
Cdd:COG0366  332 ---LTLPGTPYIYYGDEIGMTGDKLQDPEGrdgcrTP-MPWSDDrnagfSTGWLPVPPNYKAiNVEAQEADPDSLLNFYR 407

                 ....*.
gi 569006513 195 RLSDLR 200
Cdd:COG0366  408 KLIALR 413
AmyAc_SLC3A1 cd11359
Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins; SLC3A1, ...
1-209 1.54e-10

Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins; SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200494 [Multi-domain]  Cd Length: 456  Bit Score: 61.61  E-value: 1.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513   1 MKEALSSWLQDGVDGFQFRDVGKLMNAPLYLAEWQ------------------NITKNLSEDRLLIAGTESSDLQQIVN- 61
Cdd:cd11359  180 MDDVLRFWLDKGVDGFRVDAVKHLLEATHLRDEPQvnptqppetqynyselyhDYTTNQEGVHDIIRDWRQTMDKYSSEp 259
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513  62 ------ILESTSDLLLTSSYLSNS------------------TFTGERTESLVTRFL-NATGSQWCSWSV---------S 107
Cdd:cd11359  260 gryrfmITEVYDDIDTTMRYYGTSfkqeadfpfnfylldlgaNLSGNSINELVESWMsNMPEGKWPNWVLgnhdnsriaS 339
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 108 QAGLlaDFIPdhllrLYQLLLFTLPGTPVFSYGDELGLQGALP-------------GQPAKAPlMPWNES--SIFHIPR- 171
Cdd:cd11359  340 RLGP--QYVR-----AMNMLLLTLPGTPTTYYGEEIGMEDVDIsvdkekdpytfesRDPERTP-MQWNNSnnAGFSDANk 411
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 569006513 172 ---PVSLN---MTVKGQNEDPGSLLTQFRRLSDLRGKERSLLHG 209
Cdd:cd11359  412 twlPVNSDyktVNVEVQKTDPTSMLNLYRELLLLRSSELALHRG 455
AmyAc_OligoGlu_like cd11331
Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; ...
129-210 9.84e-09

Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins; Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200470 [Multi-domain]  Cd Length: 450  Bit Score: 55.79  E-value: 9.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 129 FTLPGTPVFSYGDELGLQGAL--------------PGQ-----PAKAPlMPWNESSI--FHIPRP--------VSLNmtV 179
Cdd:cd11331  343 LTLRGTPTLYYGDELGMEDVPippervqdpaelnqPGGglgrdPERTP-MPWDASPNagFSAADPwlplspdaRQRN--V 419
                         90       100       110
                 ....*....|....*....|....*....|.
gi 569006513 180 KGQNEDPGSLLTQFRRLSDLRGKERSLLHGD 210
Cdd:cd11331  420 ATQEADPGSMLSLYRRLLALRRAHPALSAGS 450
PRK10785 PRK10785
maltodextrin glucosidase; Provisional
129-282 2.22e-08

maltodextrin glucosidase; Provisional


Pssm-ID: 236759 [Multi-domain]  Cd Length: 598  Bit Score: 55.01  E-value: 2.22e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 129 FTLPGTPVFSYGDELGLQGAlpGQPAKAPLMPWNESsifhiprpvslnmtvkgqnEDPGSLLTQFRRLSDLRGKERSLLH 208
Cdd:PRK10785 470 FTWPGVPCIYYGDEVGLDGG--NDPFCRKPFPWDEA-------------------KQDGALLALYQRMIALRKKSQALRR 528
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569006513 209 GDFHALSSSPDLFSYIRHWDQnERYLVVLNFRDSGRsarlgasnlpagISLPASAkllLSTDSARQSREEDTSL 282
Cdd:PRK10785 529 GGCQVLYAEGNVVVFARVLQQ-QRVLVAINRGEACE------------VVLPASP---LLNVAQWQRKEGHGDL 586
AmyAc_bac2_AmyA cd11316
Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1, ...
129-209 2.37e-08

Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase); AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200455 [Multi-domain]  Cd Length: 403  Bit Score: 54.51  E-value: 2.37e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 129 FTLPGTPVFSYGDELGLQGALPGQPAKAPlMPWNESS--IFH--IPRPVSLNMTVKG---QNEDPGSLLTQFRRLSDLRG 201
Cdd:cd11316  317 LTLPGNPFIYYGEEIGMLGSKPDENIRTP-MSWDADSgaGFTtwIPPRPNTNATTASveaQEADPDSLLNHYKRLIALRN 395

                 ....*...
gi 569006513 202 KERSLLHG 209
Cdd:cd11316  396 EYPALARG 403
AmyAc_CMD cd11338
Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins; ...
129-211 1.37e-07

Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins; Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200477 [Multi-domain]  Cd Length: 389  Bit Score: 52.10  E-value: 1.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 129 FTLPGTPVFSYGDELGLQGalpgqpAKAPL----MPWNESSifhiprpvslnmtvkgQNEDpgsLLTQFRRLSDLRGKER 204
Cdd:cd11338  328 FTLPGAPCIYYGDEIGLEG------GKDPDnrrpMPWDEEK----------------WDQD---LLEFYKKLIALRKEHP 382

                 ....*..
gi 569006513 205 SLLHGDF 211
Cdd:cd11338  383 ALRTGGF 389
AmyAc_TreS cd11334
Alpha amylase catalytic domain found in Trehalose synthetase; Trehalose synthetase (TreS) ...
129-200 1.48e-05

Alpha amylase catalytic domain found in Trehalose synthetase; Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200473 [Multi-domain]  Cd Length: 447  Bit Score: 46.02  E-value: 1.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 129 FTLPGTPVFSYGDELGLqGALPGQPAKAPL---MPWNESSI--F------HIPRPV---------SLNmtVKGQNEDPGS 188
Cdd:cd11334  359 FSLPGTPVIYYGDEIGM-GDNLYLPDRDGVrtpMQWSADRNggFstadpqKLYLPViddgpygyeRVN--VEAQRRDPSS 435
                         90
                 ....*....|..
gi 569006513 189 LLTQFRRLSDLR 200
Cdd:cd11334  436 LLNWVRRLIALR 447
AmyAc_OligoGlu cd11330
Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; ...
81-221 2.47e-03

Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins; Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200469 [Multi-domain]  Cd Length: 472  Bit Score: 39.17  E-value: 2.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513  81 FTGERTESLVTRFLNATGSQWCSWSVS---QAGLLADFIPDHLLRLYQLLLFT----LPGTPVFSYGDELGL-QGALP-- 150
Cdd:cd11330  298 FSAAVVRDALEAFEAEAPDGWPCWAFSnhdVPRAVSRWAGGADDPALARLLLAlllsLRGSVCLYQGEELGLpEAELPfe 377
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 151 ------GQ---P-------AKAPlMPWNESSIFH--------IPRPVS-LNMTVKGQNEDPGSLLTQFRRLSDLRGKERS 205
Cdd:cd11330  378 elqdpyGItfwPefkgrdgCRTP-MPWQADAPHAgfstakpwLPVPPEhLALAVDVQEKDPGSVLNFYRRFLAWRKAQPA 456
                        170
                 ....*....|....*.
gi 569006513 206 LLHGDFHALSSSPDLF 221
Cdd:cd11330  457 LRTGTITFLDAPEPLL 472
AmyAc_2 cd11348
Alpha amylase catalytic domain found in an uncharacterized protein family; The Alpha-amylase ...
129-196 3.84e-03

Alpha amylase catalytic domain found in an uncharacterized protein family; The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200486 [Multi-domain]  Cd Length: 429  Bit Score: 38.44  E-value: 3.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 129 FTLPGTPVFSYGDELGLQgALPGQPAK----------APlMPWNES----------SIFHIP------RPvslnmTVKGQ 182
Cdd:cd11348  340 LTMPGVPFIYYGDEIGMR-YIEGLPSKeggynrtgsrTP-MQWDSGknagfstapaERLYLPvdpapdRP-----TVAAQ 412
                         90
                 ....*....|....
gi 569006513 183 NEDPGSLLTQFRRL 196
Cdd:cd11348  413 EDDPNSLLNFVRDL 426
AmyAc_maltase-like cd11329
Alpha amylase catalytic domain family found in maltase; Maltase (EC 3.2.1.20) hydrolyzes the ...
31-238 4.62e-03

Alpha amylase catalytic domain family found in maltase; Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200468 [Multi-domain]  Cd Length: 477  Bit Score: 38.52  E-value: 4.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513  31 LAEWQNITKNLSEDR-LLIAG-TESSDLQQIVNILESTSDLLLTSSYLSN---STFTGERTESLVTRFLNATGSQWCSWS 105
Cdd:cd11329  279 LREWRSVVKNYTDGGgLSVAEdIIRPDVYQVNGTLDLLIDLPLYGNFLAKlskAITANALHKILASISTVSATTSWPQWN 358
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569006513 106 vsqagLLADFIPDHLLRLYQLLLFTLPGTPVFSYGDELGLqgalpgqpakaplmpwNESSIFhiprpvslnmtvkgqned 185
Cdd:cd11329  359 -----LRYRDTKVVASDALTLFTSLLPGTPVVPLDSELYA----------------NVSKPT------------------ 399
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 569006513 186 pGSLLTQFRRlsdlrgkERSLLHGDFHA-LSSSPDLFSYIRHWDQNERYLVVLN 238
Cdd:cd11329  400 -ISTLEKFRA-------TPSIQHGSFNAyLLNNDTVFAYTRIKSGNPGYLVALN 445
AmyAc_bac_CMD_like cd11354
Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins; ...
129-161 9.75e-03

Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins; Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200491 [Multi-domain]  Cd Length: 357  Bit Score: 37.31  E-value: 9.75e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 569006513 129 FTLPGTPVFSYGDELGLQG--------------ALPGQPAK-APLMPW 161
Cdd:cd11354  287 FTVPGIPSIYYGDEQGFTGvkeeraggddavrpAFPASPAElAPLGEW 334
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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