|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
213-277 |
1.11e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 126.75 E-value: 1.11e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937393 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKV 277
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
60-124 |
5.49e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.35 E-value: 5.49e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937393 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
213-278 |
3.41e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 3.41e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937393 213 VGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPKYGLFAPVHKVT 278
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
60-125 |
2.32e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 2.32e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937393 60 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 125
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
634-1348 |
2.26e-21 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 101.68 E-value: 2.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 634 QQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQHEIE--SLQS-KQDSERSAHAKEMETMQAKLMKIIKEKeDSLE 710
Cdd:TIGR02169 173 EKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERyqALLKeKREYEGYELLKEKEALERQKEAIERQL-ASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 711 AVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELevlqakyTEQSEVignftsqlsAVKEKLLDLDALRkANSEGKLELe 790
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDL-------GEEEQL---------RVKEKIGELEAEI-ASLERSIAE- 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 791 tLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQ 870
Cdd:TIGR02169 313 -KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 871 TRMQDTVNKLH-------QKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQL 943
Cdd:TIGR02169 392 EKLEKLKREINelkreldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 944 TKMNDELRLKERSVEELQLKLTKANENAS--------------FLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLE 1009
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQARaseervrggraveeVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNN 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1010 LEKKMETSYNQCQDLkAKYEKASSET-----KTKHEEILQNLQKM---------LADTEDKLKAA-------------QE 1062
Cdd:TIGR02169 552 VVVEDDAVAKEAIEL-LKRRKAGRATflplnKMRDERRDLSILSEdgvigfavdLVEFDPKYEPAfkyvfgdtlvvedIE 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1063 ANRDLM-------------------------QDMEELKTQADKAKAAQTAED----------AMQIMEQMTKEKTETLAS 1107
Cdd:TIGR02169 631 AARRLMgkyrmvtlegelfeksgamtggsraPRGGILFSRSEPAELQRLRERleglkrelssLQSELRRIENRLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1108 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1187
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1188 TR-DEVTSH-QKLEEERSVLNNQLLEMKKSLPSNTLRES----------EFRKDADEEKASLQKSISLTSALLTEKDAEL 1255
Cdd:TIGR02169 791 SRiPEIQAElSKLEEEVSRIEARLREIEQKLNRLTLEKEylekeiqelqEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1256 EKLRNEVTVLRGENATAKS----LHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMI 1331
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKerdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
810
....*....|....*..
gi 568937393 1332 DFLNSVIVDLQRKNQDL 1348
Cdd:TIGR02169 951 LSLEDVQAELQRVEEEI 967
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
652-1332 |
1.60e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 1.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 652 SAEFAELKTQIERLRLdYQHEIESLQSKQDSERSAHAKEMETMQAKLMkIIKEKEDSLEAVKARLDSAEDQHLVEMEDTL 731
Cdd:TIGR02168 259 TAELQELEEKLEELRL-EVSELEEEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 732 NKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDA----LRKANSEGKLELETLRQQLEGAEKQIKNLE 807
Cdd:TIGR02168 337 EELAELE---EKLEELKEELESLEAELEELEAELEELESRLEELEEqletLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 808 TERNAESSKANSITKELQEKELVLtgLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 887
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 888 NVLSSELEKLRENLTDMEAKFKEKDDRED------QLVKAKEK----LENDIAEIMKMSGDNSSQLTKMNDELRLKERSV 957
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGilgvlsELISVDEGyeaaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELG 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 958 EELQLKLTKANENAsfLQKSIGEVtLKAEQSQQQAARKHEEEKKELEEKLLE--LEKKMETSYNQCQDLKAKYE------ 1029
Cdd:TIGR02168 572 RVTFLPLDSIKGTE--IQGNDREI-LKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDNALELAKKLRpgyriv 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1030 --------------KASSETKTKheeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKaaQTAEDAMQIME 1095
Cdd:TIGR02168 649 tldgdlvrpggvitGGSAKTNSS----ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE--EELEQLRKELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1096 QMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQ 1175
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1176 EENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKSLPsntlRESEFRKDADEEKASLQKSISLTSALLTEKDAEL 1255
Cdd:TIGR02168 803 EALDELRAELTLLNEEA---ANLRERLESLERRIAATERRLE----DLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568937393 1256 EKLRNEVTVLRGEnatakslhsvVQTLESDKVKLELKVKNLELQLKENKRQLSSSsgnTDAQAEEDERAQESQQMID 1332
Cdd:TIGR02168 876 EALLNERASLEEA----------LALLRSELEELSEELRELESKRSELRRELEEL---REKLAQLELRLEGLEVRID 939
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-1163 |
2.61e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 94.74 E-value: 2.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 356 LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHdqhvLELEAKMDQLRTMVEAADREKVELLNQLEEEKR 435
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 436 KVEDLQFRVEEESITKGDLEQKSPISEDPENT-QTKLEHARTKELEQSLLFEKTKADKLQRE--LEDTRVATVSEKSRIM 512
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAElEEKLEELKEELESLEAELEELEAELEELEsrLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 513 ELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKL-EAIHTDHQGEMTSLKEHFGAREEAFQKEIKALH 591
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLE-----DRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 592 TATEKLSKENESLRSKLDHANKENSDVIALwkskletaiashqQAMEELKVSFSKGIgtdsaefAELKTQIERLRLDYQH 671
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSL-------------ERLQENLEGFSEGV-------KALLKNQSGLSGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 672 EIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVK---------ARLDSAEDQHLVEmeDTLNKLQEAEIKVK 742
Cdd:TIGR02168 525 LSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKqnelgrvtfLPLDSIKGTEIQG--NDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 743 ELEVLQAKYTEQSEVIGNFTSQLSAVKekllDLD-ALRKANSEGKLEL-------------------ETLRQQLEGAEKQ 802
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALSYLLGGVLVVD----DLDnALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILERRRE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 803 IKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQ 882
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 883 KEEQFNVLSSELEKLRENLTDMEAKfkekddredqlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQL 962
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAE--------------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 963 KLTKANENASFLQKSIGEVTLKAEQSQQQAARkheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtktkHEEI 1042
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEALLNERASLEEALAL----LRSE 895
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1043 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA------AQTAEDAMQIMEQMTKEKTETLASLEDTKQTNA 1116
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVridnlqERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 568937393 1117 RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQA 1163
Cdd:TIGR02168 976 RLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-993 |
6.95e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.03 E-value: 6.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 352 LQEALKEKQQHIEQLLAERDLERAEVAKATshvgEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADrekvellNQLE 431
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELE----AELEELESRLEELEEQLETLRSKVAQLELQIASLN-------NEIE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 432 EEKRKVEDLQFRVEEESITKGDLEQkspisedpentqtKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRI 511
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLK-------------KLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 512 MELEKDLALRAQEVAELRRRLESSKppgdvdmslSLLQEISALQEKLEAIhTDHQGEMTSLKEHFGAREEAFQKEIKALH 591
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLE---------RLQENLEGFSEGVKAL-LKNQSGLSGILGVLSELISVDEGYEAAIE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 592 TATEK-----LSKENESLRSKLDHAnKENSDVIALWkSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERL- 665
Cdd:TIGR02168 541 AALGGrlqavVVENLNAAKKAIAFL-KQNELGRVTF-LPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAl 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 666 --RLDYQHEIESLQSKQDSERSAHAKEMetmqaklmkIIKEKEDSLEAVKARLDSAEDQHLV------EMEDTLNKLQEA 737
Cdd:TIGR02168 619 syLLGGVLVVDDLDNALELAKKLRPGYR---------IVTLDGDLVRPGGVITGGSAKTNSSilerrrEIEELEEKIEEL 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 738 EIKVKELEV-LQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSK 816
Cdd:TIGR02168 690 EEKIAELEKaLAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 817 ANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEK 896
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 897 LRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQK 976
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
650
....*....|....*..
gi 568937393 977 SIGEVTLKAEQSQQQAA 993
Cdd:TIGR02168 930 RLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-969 |
1.72e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 1.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALArdghDQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL----EQQKQILRERLANLERQLEELEAQLEELESKL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 431 EEEKRKVEDLQFRVEEesiTKGDLEQKSPISEDPENTQTKLEhARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSR 510
Cdd:TIGR02168 333 DELAEELAELEEKLEE---LKEELESLEAELEELEAELEELE-SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 511 IMELEKDLALRAQEVAELRRRLESSkppgDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQK----- 585
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLEEA----ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAaerel 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 586 -----EIKALHTATEKLSKENESLRSKLDHANKENSDVIAL---------WKSKLETAIASHQQA--MEELK-----VSF 644
Cdd:TIGR02168 485 aqlqaRLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLselisvdegYEAAIEAALGGRLQAvvVENLNaakkaIAF 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 645 SKGIGTDSAEFAELK----TQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKI-IKEKEDSLEAVKARLDSA 719
Cdd:TIGR02168 565 LKQNELGRVTFLPLDsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlVVDDLDNALELAKKLRPG 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 720 E-----DQHLV----------------------EMEDTLNKLQEAEIKVKELEV-LQAKYTEQSEVIGNFTSQLSAVKEK 771
Cdd:TIGR02168 645 YrivtlDGDLVrpggvitggsaktnssilerrrEIEELEEKIEELEEKIAELEKaLAELRKELEELEEELEQLRKELEEL 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 772 LLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKET---- 847
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAlrea 804
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 848 ---LEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEK 924
Cdd:TIGR02168 805 ldeLRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 568937393 925 LENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANE 969
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
513-1268 |
4.56e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 4.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 513 ELEKDL------ALRAQEVAELRRRLEsskppgDVDMSLSLLqEISALQEKLEAIhtdhQGEMTSLKEhfgaREEAFQKE 586
Cdd:TIGR02168 197 ELERQLkslerqAEKAERYKELKAELR------ELELALLVL-RLEELREELEEL----QEELKEAEE----ELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 587 IKALHTATEKLSKENESLRSKLDHANKENSDVIALwKSKLETAIASHQQAMEELKVSFSKGigtdSAEFAELKTQIERLR 666
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEEL----EAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 667 LDY---QHEIESLQSKQDSERSAHAKEMETMQAkLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAEIKVKE 743
Cdd:TIGR02168 337 EELaelEEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLRSKVAQLELQ----IASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 744 LEVLQAKYTEQSEVIGNfTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKE 823
Cdd:TIGR02168 412 LEDRRERLQQEIEELLK-KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 824 ---LQEKELVLTGLQDSLNQVNQVKETLEKELQTLKE--KFASTSEEAVSA--QTRMQD-TVNKLHQKEEQFNVLSSELE 895
Cdd:TIGR02168 491 ldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEliSVDEGYEAAIEAalGGRLQAvVVENLNAAKKAIAFLKQNEL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 896 --------------KLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMkmSG----DNSSQLTKMNDELRLKERSV 957
Cdd:TIGR02168 571 grvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL--GGvlvvDDLDNALELAKKLRPGYRIV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 958 eelqlklTKANE--NASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSET 1035
Cdd:TIGR02168 649 -------TLDGDlvRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1036 KTK-------------HEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQ-----ADKAKAAQTAEDAMQIMEQM 1097
Cdd:TIGR02168 722 EELsrqisalrkdlarLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEElaeaeAEIEELEAQIEQLKEELKAL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1098 TKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEE 1177
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1178 NVKLAEELGRTRDE----VTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLT----SALLT 1249
Cdd:TIGR02168 882 RASLEEALALLRSEleelSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTleeaEALEN 961
|
810
....*....|....*....
gi 568937393 1250 EKDAELEKLRNEVTVLRGE 1268
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
405-1241 |
7.14e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 7.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 405 LEAKMDQLRTMVEAA------DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKE 478
Cdd:TIGR02168 150 IEAKPEERRAIFEEAagiskyKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 479 LEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKL 558
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ-----KELYALANEISRLEQQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 559 EAIHTDHQGEMTSLKEHFGAREEAFQKEIKALhTATEKLSKENESLRSKLDHANKENSDVIALWKSkLETAIASHQQAME 638
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELA-EELAELEEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 639 ELK---VSFSKGIGTDSAEFAELKTQIERL--RLDYQHEI--ESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDsLEA 711
Cdd:TIGR02168 383 TLRskvAQLELQIASLNNEIERLEARLERLedRRERLQQEieELLKKLEEAELKELQAELEELEEELEELQEELER-LEE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 712 VKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELET 791
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEA 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 792 L----RQQL--EGAEKQIKNLETERNAESSKANSitkelqekeLVLTGLQDSLNQVN--QVKETLEKELQTLKE--KFAS 861
Cdd:TIGR02168 542 AlggrLQAVvvENLNAAKKAIAFLKQNELGRVTF---------LPLDSIKGTEIQGNdrEILKNIEGFLGVAKDlvKFDP 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 862 TSEEAVS---AQTRMQDTV----NKLHQKEEQFNVLSSELEKLR--------ENLTDMEAKFKEKDDREdqLVKAKEKLE 926
Cdd:TIGR02168 613 KLRKALSyllGGVLVVDDLdnalELAKKLRPGYRIVTLDGDLVRpggvitggSAKTNSSILERRREIEE--LEEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 927 NDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEK 1006
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1007 LLELEKKMETSYNQcQDLKAKYEKASSETKTKhEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAkaAQT 1086
Cdd:TIGR02168 771 EEAEEELAEAEAEI-EELEAQIEQLKEELKAL-REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL--EEQ 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1087 AEDAMQIMEQMTKEktetlasLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKMEEFKKEIETLKQAAAQ 1166
Cdd:TIGR02168 847 IEELSEDIESLAAE-------IEELEELIEELESELEALL-------NERASLEEALALLRSELEELSEELRELESKRSE 912
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937393 1167 KSQQLSALQEENVKLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKSLPSNTLRESEfrkDADEEKASLQKSI 1241
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRI---DNLQERLSEEYSLTLEEAEALENKIEDDEE---EARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-932 |
8.83e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 8.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDG---HDQHVLELEAKMDQLRTMVEAADREKVELL 427
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyeLLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 428 NQLEEEKRKVEDLQFRVEEEsitKGDLEQKSPISEDPENTQTKLEHARtKELEQSLLFEKTKADKLQRELEDTRVATVSE 507
Cdd:COG1196 323 EELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEAL-LEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 508 KSRIMELEKDLALRAQEVAELRRRLEsskppgdvdmslSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEI 587
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELE------------ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 588 KALHTATEKLSKENESLRSKLDHANKENSDVIALWK--SKLETAIASHQQA-MEELKVSFSKGIGTDSAEFAELKTQIER 664
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEGVKAALLLAgLRGLAGAVAVLIGVEAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 665 LRLDYQHE--------IESLQSKQ---------DSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEM 727
Cdd:COG1196 547 ALQNIVVEddevaaaaIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 728 EDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLE 807
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 808 TERNAESSkansitKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTrMQDTVNKLHQKEEQF 887
Cdd:COG1196 707 RELAEAEE------ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE-LERELERLEREIEAL 779
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 568937393 888 ---NVLS-SELEKLRENLTDMEAKfkekddREDqLVKAKEKLENDIAEI 932
Cdd:COG1196 780 gpvNLLAiEEYEELEERYDFLSEQ------RED-LEEARETLEEAIEEI 821
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
416-1215 |
1.18e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.81 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 416 VEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQK--------SPISEDPENT-QTKLE--HARTKELEQSLL 484
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLleelnkkiKDLGEEEQLRvKEKIGelEAEIASLERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 485 FEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdmslsllQEISALQEKLEAIHTD 564
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK------------EELEDLRAELEEVDKE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 565 HQgemTSLKEHFGARE--EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDV---IALWKSKLETAIASHQQAMEE 639
Cdd:TIGR02169 380 FA---ETRDELKDYREklEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIeakINELEEEKEDKALEIKKQEWK 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 640 LKvSFSKGIGTDSAEFAELKTQIERLrldyQHEIESLQSKQDsERSAHAKEMETMQAKLMKIIKEKEDSLEAVK---ARL 716
Cdd:TIGR02169 457 LE-QLAADLSKYEQELYDLKEEYDRV----EKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLKASIQGVHgtvAQL 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 717 DSAEDQHLVEMEDTL-NKLQEAeikVKELEVLQAKYTE--QSEVIGNFTS-QLSAVKEKLLDLDALRKANSEG-KLELET 791
Cdd:TIGR02169 531 GSVGERYATAIEVAAgNRLNNV---VVEDDAVAKEAIEllKRRKAGRATFlPLNKMRDERRDLSILSEDGVIGfAVDLVE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 792 LRQQLEGAEKQI-------KNLETERNAESS-KANSITKELQEKELVLTG--------------LQDSLNQVNQVKETLE 849
Cdd:TIGR02169 608 FDPKYEPAFKYVfgdtlvvEDIEAARRLMGKyRMVTLEGELFEKSGAMTGgsraprggilfsrsEPAELQRLRERLEGLK 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 850 KELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDdredqlvkakEKLENDI 929
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE----------QEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 930 AEimkmsgdnssqLTKMNDELRLKERSVEELQLKLT--KANENASFLQKSIGEVT-LKAEQSQQQAARKH-EEEKKELEE 1005
Cdd:TIGR02169 758 SE-----------LKELEARIEELEEDLHKLEEALNdlEARLSHSRIPEIQAELSkLEEEVSRIEARLREiEQKLNRLTL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1006 KLLELEKKMETSYNQCQDLKAKyekassetKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAq 1085
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQ--------IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ- 897
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1086 taedamqiMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENnLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAaa 1165
Cdd:TIGR02169 898 --------LRELERKIEELEAQIEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE-- 966
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 568937393 1166 qksqqLSALQEENVK----LAEELGRTRDEVTSHQKLEEERSVLN---NQLLEMKKS 1215
Cdd:TIGR02169 967 -----IRALEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILeriEEYEKKKRE 1018
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
775-1365 |
2.30e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 81.65 E-value: 2.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 775 LDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLqdslnqvnqvkETLEKELQT 854
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL-----------EKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 855 LKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEaKFKEKDDREDQLVKAKEKLENDIAEIMK 934
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 935 MSGDNSSQLT---KMNDELRLKERSVEELQLKLTKANENASFLQKSIGEV-TLKAEQSQQQAARKheeekkeleekllel 1010
Cdd:PRK03918 315 RLSRLEEEINgieERIKELEEKEERLEELKKKLKELEKRLEELEERHELYeEAKAKKEELERLKK--------------- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1011 ekkmETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTEDKLKaaqeanrDLMQDMEELKTQADKA---KAAQTA 1087
Cdd:PRK03918 380 ----RLTGLTPEKLEKELEELEKA-KEEIEEEISKITARIGELKKEIK-------ELKKAIEELKKAKGKCpvcGRELTE 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1088 EDAMQIMEQMT-------KEKTETLASLEDTKQTNARLQNELDTLKE--NNLKTVEELNKSKELLSVEN-QKMEEFKKEI 1157
Cdd:PRK03918 448 EHRKELLEEYTaelkrieKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNlEELEKKAEEY 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1158 ETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMK-KSLPSNTLRESEFR--------- 1227
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfyneylel 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1228 KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSV--VQTLESDKVKLELKVKNLELQLKENKR 1305
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEeeYEELREEYLELSRELAGLRAELEELEK 687
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1306 QLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGE 1365
Cdd:PRK03918 688 RREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
356-974 |
2.95e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 81.70 E-value: 2.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 356 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELAL----ARDGHD---QHVLELEAKMDQLRTMVEAADREKV 424
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIiqeqARNQNSmymRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 425 ELLNQLEEE---------KRKVEDLQFrvEEESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQR 495
Cdd:pfam15921 342 DKIEELEKQlvlanseltEARTERDQF--SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRR 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 496 ELEDTRVatvsEKSRIMELEKDLALRAQ------------------EVAELRRRLESSKppgdvDMSLSLLQEISALQEK 557
Cdd:pfam15921 420 ELDDRNM----EVQRLEALLKAMKSECQgqmerqmaaiqgknesleKVSSLTAQLESTK-----EMLRKVVEELTAKKMT 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 558 LEAIHTDHQGEMTSLKEHFGAREeAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIAL-----WKSKLETAIAS 632
Cdd:pfam15921 491 LESSERTVSDLTASLQEKERAIE-ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALklqmaEKDKVIEILRQ 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 633 HQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQhEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAV 712
Cdd:pfam15921 570 QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ-EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 713 KaRLDSAEDQHLVEMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLsavkeklldldalrkansegKLELETL 792
Cdd:pfam15921 649 K-DIKQERDQLLNEVKTSRNELNSLS---EDYEVLKRNFRNKSEEMETTTNKL--------------------KMQLKSA 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 793 RQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTR 872
Cdd:pfam15921 705 QSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATE 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 873 MQDTVNKLHqkeeqfnVLSSELEKLRENLTDMEA-------KFKEKDD----REDQLVKAKEKLENDIAEimkMSGDNSS 941
Cdd:pfam15921 785 KNKMAGELE-------VLRSQERRLKEKVANMEValdkaslQFAECQDiiqrQEQESVRLKLQHTLDVKE---LQGPGYT 854
|
650 660 670
....*....|....*....|....*....|...
gi 568937393 942 QLTKMNDELrLKERSVEELQLKLTKANENASFL 974
Cdd:pfam15921 855 SNSSMKPRL-LQPASFTRTHSNVPSSQSTASFL 886
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
709-1261 |
1.52e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 1.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 709 LEAVKARLDSAEDqHLVEMEDTLNKLQ-EAEIKVK------ELEVLQAKYteqsevignftsQLSAVKEKLLDLDALRKA 781
Cdd:COG1196 181 LEATEENLERLED-ILGELERQLEPLErQAEKAERyrelkeELKELEAEL------------LLLKLRELEAELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 782 NSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANS-------ITKELQEKELVLTGLQDSLNQVNQVKETLEKELQT 854
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEaqaeeyeLLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 855 LKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 934
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 935 MSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQ--SQQQAARKHEEEKKELEEKLLELEK 1012
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAllELLAELLEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1013 KMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ----KMLADTEDKLKAAQEA------NRDLMQDMEELKTQADKAK 1082
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavAVLIGVEAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1083 AAQTAEDAMQIMEQMTKEKTETLASL------------EDTKQTNARLQNELDTLKENNLKT------VEELNKSKELLS 1144
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALArgaigaavdlvaSDLREADARYYVLGDTLLGRTLVAarleaaLRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1145 VENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLpsntLRES 1224
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE----ELEE 723
|
570 580 590
....*....|....*....|....*....|....*..
gi 568937393 1225 EFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNE 1261
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-934 |
2.66e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.18 E-value: 2.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 340 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELaLARDGHDQHVLELEAKMDQLRTMVEAA 419
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV-KELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENTQTKLehartKELEQSLLFEKTKADKLQRELED 499
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDEL-----REIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 500 TRvatvSEKSRIMELEKdlalraqEVAELRRRLESSKPpgdvdmSLSLLQEISALQEKLEaihtdhqgemtSLKEHFGAR 579
Cdd:PRK03918 333 LE----EKEERLEELKK-------KLKELEKRLEELEE------RHELYEEAKAKKEELE-----------RLKKRLTGL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 580 E-EAFQKEIKALHTATEKLSKENESLRSKldhankensdvialwKSKLETAIASHQQAMEELKVsfskgigtdsaefAEL 658
Cdd:PRK03918 385 TpEKLEKELEELEKAKEEIEEEISKITAR---------------IGELKKEIKELKKAIEELKK-------------AKG 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 659 KTQIERLRLDYQHEIESLqskqdSERSAHAKEMEtmqaKLMKIIKEKEDSLEAVKARLDS--AEDQHLVEMEDTLNKLQE 736
Cdd:PRK03918 437 KCPVCGRELTEEHRKELL-----EEYTAELKRIE----KELKEIEEKERKLRKELRELEKvlKKESELIKLKELAEQLKE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 737 AEIKVKE--LEVLQAKYTEQSEV---IGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERN 811
Cdd:PRK03918 508 LEEKLKKynLEELEKKAEEYEKLkekLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 812 AESSKANSITKELQEKELVLTGLQDSLnqvnqvkETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNV-- 889
Cdd:PRK03918 588 EELEERLKELEPFYNEYLELKDAEKEL-------EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEee 660
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 568937393 890 ---LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMK 934
Cdd:PRK03918 661 yeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
454-1302 |
8.09e-14 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 76.93 E-value: 8.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 454 LEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRrrle 533
Cdd:pfam02463 178 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI---- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 534 sskppgdvdmsLSLLQEISALQEKLEAIHTDHQGEMtslkehfgaREEAFQKEIKALHTATEKLSKENESLRSKLDHANK 613
Cdd:pfam02463 254 -----------ESSKQEIEKEEEKLAQVLKENKEEE---------KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 614 ENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMET 693
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 694 MQAKLMKIIKEKEDSLEAVKARldSAEDQHLVEMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIgnftsQLSAVKEKLL 773
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELAR--QLEDLLKEEKKEELEILEEEE---ESIELKQGKLTEEKEEL-----EKQELKLLKD 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 774 DLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLqdslnqvnQVKETLEKELQ 853
Cdd:pfam02463 464 ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRI--------ISAHGRLGDLG 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 854 TLKEKFASTSEEAVSAQtRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIM 933
Cdd:pfam02463 536 VAVENYKVAISTAVIVE-VSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLE 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 934 KMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeeKKELEEKLLELEKK 1013
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL----EIQELQEKAESELA 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1014 METSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK----LKAAQEANRDLMQDMEELKTQADKAKAAQTAED 1089
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKineeLKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1090 AMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQ 1169
Cdd:pfam02463 771 LKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1170 QLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKslpSNTLRESEFRKDADEEKASLQKSISLTSAllt 1249
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE---KEEKKELEEESQKLNLLEEKENEIEERIK--- 924
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 568937393 1250 EKDAELEKLRNEVTVLRGENATAKSLhsvvqtLESDKVKLELKVKNLELQLKE 1302
Cdd:pfam02463 925 EEAEILLKYEEEPEELLLEEADEKEK------EENNKEEEEERNKRLLLAKEE 971
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-1161 |
9.41e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.65 E-value: 9.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 344 RKISGTTALQEALKEKQQH---IEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRTMVEA-A 419
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALerqKEAIERQLASLEEELEKLTEEISELEKRLE-----------EIEQLLEELNKKIKDlG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 420 DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDpENTQTKLEHArtkELEQSLLFEKTKADKLQRELED 499
Cdd:TIGR02169 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA-EIDKLLAEIE---ELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 500 TRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDvdmslSLLQEISALQEKLEAIHT---DHQGEMTSLKE-- 574
Cdd:TIGR02169 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-----ELKRELDRLQEELQRLSEelaDLNAAIAGIEAki 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 575 -HFGAREEAFQKEIKA----LHTATEKLSKENESL---RSKLDHANKENSDVialwKSKLETAIASHQQAMEELKVSFS- 645
Cdd:TIGR02169 437 nELEEEKEDKALEIKKqewkLEQLAADLSKYEQELydlKEEYDRVEKELSKL----QRELAEAEAQARASEERVRGGRAv 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 646 -KGIGTDSAEFAELKTQIERLRLDYQHEIESLQSK-------QDSERSAHA----KEMETMQAKLMKIIKEKEDSLEAVK 713
Cdd:TIGR02169 513 eEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvvvEDDAVAKEAiellKRRKAGRATFLPLNKMRDERRDLSI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 714 ARLDSAEDQ--HLVEMEDtlnKLQEAEIKVKELEVLQAKYTEQSEVIGNFtsQLSAVKEKLLD--------LDALRKANS 783
Cdd:TIGR02169 593 LSEDGVIGFavDLVEFDP---KYEPAFKYVFGDTLVVEDIEAARRLMGKY--RMVTLEGELFEksgamtggSRAPRGGIL 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 784 ---EGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFA 860
Cdd:TIGR02169 668 fsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 861 STSEEAVSAQTRMQDTVNKLHQKEEQfnvlsseLEKLRENLTDMEAkfKEKDDREDQLVKAKEKLENDIAEIMKMSGDNS 940
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEED-------LHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 941 SQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHeeekkeleekllelekkmetsyNQ 1020
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE----------------------AA 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1021 CQDLKAKYEKASSETKtkheeilqNLQKMLADTEDKLkaaQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKE 1100
Cdd:TIGR02169 877 LRDLESRLGDLKKERD--------ELEAQLRELERKI---EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568937393 1101 KTETLASLEDTKQTNARLQNELDTLKENNLKTVEE----------LNKSKELLSVENQKMEEFKKEIETLK 1161
Cdd:TIGR02169 946 IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEyeevlkrldeLKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
565-1234 |
1.45e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 76.33 E-value: 1.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 565 HQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSF 644
Cdd:PTZ00121 1065 HVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEE 1144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 645 SKGigTDSAEFAELKTQIERLRldyqhEIESLQSKQDSERSAHAKEMEtmQAKLMKIIKEKEDSLEAVKAR----LDSAE 720
Cdd:PTZ00121 1145 ARK--AEDAKRVEIARKAEDAR-----KAEEARKAEDAKKAEAARKAE--EVRKAEELRKAEDARKAEAARkaeeERKAE 1215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 721 DQHLVEMEDTLNKLQEAE-IKVKELEVLQAKYTEQSEVIGNFTSQLSA---VKEKLLDLDALRKANSEGKLELETLRQQL 796
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEeAKKDAEEAKKAEEERNNEEIRKFEEARMAhfaRRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 797 EGAEKQIKNLETERNAESS-KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ- 874
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAkKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEe 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 875 -----DTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 949
Cdd:PTZ00121 1376 akkkaDAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 950 LRLKERSVE--ELQLKLTKANENASFLQKSiGEVTLKAEQSQQQA--ARKHEEEKKELEEKLLELEKKMETSYNQCQDLK 1025
Cdd:PTZ00121 1456 AKKAEEAKKkaEEAKKADEAKKKAEEAKKA-DEAKKKAEEAKKKAdeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1026 AKYEKASSETKTKHEEILQnlQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETL 1105
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKK--AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1106 ASLEDTKQTNARLQNEldtlkENNLKTVEELNKSKEllsVENQKMEEFKKEIETLKQAAAQ----------KSQQLSALQ 1175
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKA-----EEEKKKVEQLKKKEA---EEKKKAEELKKAEEENKIKAAEeakkaeedkkKAEEAKKAE 1684
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 568937393 1176 EENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEK 1234
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
351-932 |
1.95e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 351 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELALAR---DGHDQHVLELEAKMDQLRTMVEAADREKVELL 427
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEaelAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 428 NQLEEEKRKVEDLQFRVEEESITKGDLEQkspiSEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVATVSE 507
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEE----ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 508 KSRIMELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEI 587
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELA-----AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 588 KALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIAS----HQQAMEELKVSFSKGIGtdsaefaeLKTQIE 663
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAarllLLLEAEADYEGFLEGVK--------AALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 664 RLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDS-AEDQHLVEMEDTLNKLQEAEIKVK 742
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGrATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 743 ELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITK 822
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 823 ELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQtrmqdtvnKLHQKEEQFNVLSSELEKLRENLT 902
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA--------LEEQLEAEREELLEELLEEEELLE 749
|
570 580 590
....*....|....*....|....*....|
gi 568937393 903 DMEAKFKEKDDREDQLVKAKEKLENDIAEI 932
Cdd:COG1196 750 EEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
211-271 |
2.29e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.11 E-value: 2.29e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568937393 211 LKVGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
659-1365 |
3.14e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.77 E-value: 3.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 659 KTQIERLRLDYQHEIESLQSKQDSERSAHAKE-------METMQAKLMKIIKEKeDSLEAVKARLDSAEDQHLVEMEDTL 731
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQkfylrqsVIDLQTKLQEMQMER-DAMADIRRRESQSQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 732 NKLQEAE-IKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDAL--RKANSEGKLELETLRQQLEGAEKQIKNLET 808
Cdd:pfam15921 152 HELEAAKcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEAsgKKIYEHDSMSTMHFRSLGSAISKILRELDT 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 809 ERN-------AESSKANSITKELQEK-ELVLTGLQDslnQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQ----DT 876
Cdd:pfam15921 232 EISylkgrifPVEDQLEALKSESQNKiELLLQQHQD---RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiqeQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 877 VNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEK-DDREDQLVKAKEKLENDIAE---IMKMSGDNSSQLTKMNDEL-- 950
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKiEELEKQLVLANSELTEARTErdqFSQESGNLDDQLQKLLADLhk 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 951 RLKERSVEELQLKLTKANENASFLqkSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDlKAKYEK 1030
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDTGNSI--TIDHLRRELDDRNMEVQR---------------LEALLKAMKSECQG-QMERQM 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1031 ASSETKTKHEEILQNLQKMLADTEDKL-KAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMqimEQMTKEKTETLASLE 1109
Cdd:pfam15921 451 AAIQGKNESLEKVSSLTAQLESTKEMLrKVVEELTAKKMTLESSERTVSDLTASLQEKERAI---EATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1110 DTKQTNARLQNELDTLKenNLKTveELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTR 1189
Cdd:pfam15921 528 LKLQELQHLKNEGDHLR--NVQT--ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1190 DEVTSHQKLEEERSVlnnqllemkkslpsnTLRESEFR-KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1268
Cdd:pfam15921 604 LELQEFKILKDKKDA---------------KIRELEARvSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE 668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1269 -NATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMidfLNSVIVDLQRKNQD 1347
Cdd:pfam15921 669 lNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG---MQKQITAKRGQIDA 745
|
730
....*....|....*...
gi 568937393 1348 LKMKVEMMSEAALNGNGE 1365
Cdd:pfam15921 746 LQSKIQFLEEAMTNANKE 763
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
701-1297 |
3.65e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 74.69 E-value: 3.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 701 IIKEKEDSLEAVKARLDSAEDQHLVEmedtlnKLQEAEIKVKELEvlqakyteqsEVIGNFTSQLSAVKEKLLDLDALRK 780
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHE------RLNGLESELAELD----------EEIERYEEQREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 781 ANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFA 860
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 861 STSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEK----DDREDQLvkakEKLENDIAEIMKMS 936
Cdd:PRK02224 325 ELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAreavEDRREEI----EELEEEIEELRERF 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 937 GDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSI--GEVTLKA----EQSQQQAARKHEEEKKELEEKLLEL 1010
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVeeAEALLEAgkcpECGQPVEGSPHVETIEEDRERVEEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1011 EKKMETSYNQCQDLKAKYEKASSETKT-----KHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQAD-KAKAA 1084
Cdd:PRK02224 481 EAELEDLEEEVEEVEERLERAEDLVEAedrieRLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1085 QTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLkENNLKTVEELN-KSKELLSVENQKMEefkkeieTLKQA 1163
Cdd:PRK02224 561 AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAI-ADAEDEIERLReKREALAELNDERRE-------RLAEK 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1164 AAQKSQQLSALQEENVklaEELGRTRDEVTSHQ-KLEEErsvlnnqllemkkslpsntLRESEfrkdadEEKASLQKSIs 1242
Cdd:PRK02224 633 RERKRELEAEFDEARI---EEAREDKERAEEYLeQVEEK-------------------LDELR------EERDDLQAEI- 683
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 568937393 1243 ltsALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLES--DKVKLELKVKNLE 1297
Cdd:PRK02224 684 ---GAVENELEELEELRERREALENRVEALEALYDEAEELESmyGDLRAELRQRNVE 737
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
406-1243 |
6.02e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.00 E-value: 6.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 406 EAKMDQLRTMVEAADREKVELLnqLEEEKRKVEDLQFRVEEESitKGDLEQKSPISEDPENTQTKLEHArtkELEQSLLF 485
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESN--ELHEKQKFYLRQSVIDLQTKLQEM---QMERDAMA 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 486 E-KTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQ-EVAELRRRLESSKppgdvdmslSLLQEISALQEKLEAIHT 563
Cdd:pfam15921 131 DiRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNtQIEQLRKMMLSHE---------GVLQEIRSILVDFEEASG 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 564 DHQGEMTSLKE-HFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENsdvialwKSKLETAIASHQQAMEELKV 642
Cdd:pfam15921 202 KKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSES-------QNKIELLLQQHQDRIEQLIS 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 643 SFSKGIGTDSAEFAELKTQIERLrldyQHEIESLQSKQDSERSAHakemetmqaklMKIIKEKEDSLEAVKARLDSAEDQ 722
Cdd:pfam15921 275 EHEVEITGLTEKASSARSQANSI----QSQLEIIQEQARNQNSMY-----------MRQLSDLESTVSQLRSELREAKRM 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 723 HLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSeviGNFTSQLSAV------KEKLLDLDA-----LRKANSEGKLELET 791
Cdd:pfam15921 340 YEDKIEELEKQLVLANSELTEARTERDQFSQES---GNLDDQLQKLladlhkREKELSLEKeqnkrLWDRDTGNSITIDH 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 792 LRQQLEGAEKQIKNLETERNAESSKANSitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLK---EKFASTSEEAVS 868
Cdd:pfam15921 417 LRRELDDRNMEVQRLEALLKAMKSECQG---QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRkvvEELTAKKMTLES 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 869 AQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLE---------NDIAEIMKMSGDN 939
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEalklqmaekDKVIEILRQQIEN 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 940 SSQLT-------------KMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQ-QAARKHEEEKKELEE 1005
Cdd:pfam15921 574 MTQLVgqhgrtagamqveKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLvNAGSERLRAVKDIKQ 653
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1006 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMladtEDKLKAAQ---EANRDLMQDMEELKTQADKAk 1082
Cdd:pfam15921 654 ERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL----KMQLKSAQselEQTRNTLKSMEGSDGHAMKV- 728
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1083 aaqtaedAMQIMEQMTKEKTETLAsledtkqtnarLQNELDTLKEnnlkTVEELNKSKELLSVENQKMeefkkeietlkq 1162
Cdd:pfam15921 729 -------AMGMQKQITAKRGQIDA-----------LQSKIQFLEE----AMTNANKEKHFLKEEKNKL------------ 774
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1163 aaaqkSQQLSALQEENVKLAEELgrtrdEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSIS 1242
Cdd:pfam15921 775 -----SQELSTVATEKNKMAGEL-----EVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLD 844
|
.
gi 568937393 1243 L 1243
Cdd:pfam15921 845 V 845
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
656-1261 |
6.56e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 6.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 656 AELKTQIERLRLdyqheieslQSKQDSERSAHAKEMETMQAKLMKI-IKEKEDSLEAVKARLDSAEdqhlvemedtlnkl 734
Cdd:COG1196 196 GELERQLEPLER---------QAEKAERYRELKEELKELEAELLLLkLRELEAELEELEAELEELE-------------- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 735 QEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDAlRKANSEGKLELETLR-----QQLEGAEKQIKNLETE 809
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA-ELARLEQDIARLEERrreleERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 810 RNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNV 889
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 890 LSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANE 969
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE----EEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 970 NASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNqcQDLKAKYEKASSETKTKHEEILQNLQKM 1049
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE--AALEAALAAALQNIVVEDDEVAAAAIEY 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1050 LADTedKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1129
Cdd:COG1196 566 LKAA--KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1130 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQL 1209
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 568937393 1210 LEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNE 1261
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
788-1310 |
1.56e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 72.36 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 788 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAV 867
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 868 SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMN 947
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 948 DEL---RLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHeeekkeleekllelekkmetsyNQCQDL 1024
Cdd:TIGR04523 201 LLLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----------------------TQLNQL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1025 KAKYEKASSETKTKHEEILQNLQKmLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTet 1104
Cdd:TIGR04523 259 KDEQNKIKKQLSEKQKELEQNNKK-IKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNK-- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1105 laSLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL--------------KQAAAQKSQQ 1170
Cdd:TIGR04523 336 --IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqEKLNQQKDEQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1171 LSALQEENVKLAEELGRTRDEVTSHQK----LEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKsislTSA 1246
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ----KQK 489
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937393 1247 LLTEKDAELEKLRNEVTVLRGENATAK----SLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSS 1310
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTkkisSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
60-121 |
7.98e-12 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 70.10 E-value: 7.98e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568937393 60 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 121
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
725-1087 |
8.79e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 8.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 725 VEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEvignftsQLSAVKEKLLDLDALRKanSEGKLELETLRQQLEGAEKQIK 804
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLE-------RLRREREKAERYQALLK--EKREYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 805 NLETERNAESSKANSITKELQEKELVLTGLQDSLNQVN-QVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQK 883
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 884 EEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimkmsgdnssqltkmnDELRLKERSVEELQLK 963
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK---------------------EELEDLRAELEEVDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 964 LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELekkmetsyNQCQDLKAKYEKASSETKTKHEEI- 1042
Cdd:TIGR02169 380 FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLN--------AAIAGIEAKINELEEEKEDKALEIk 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568937393 1043 -----LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 1087
Cdd:TIGR02169 452 kqewkLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
788-1304 |
1.27e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 69.28 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 788 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQdslnQVNQVKETLEKELQTLKEKFASTSEEAV 867
Cdd:TIGR04523 160 KYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISELKKQNNQLKDNIE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 868 SAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQltKMN 947
Cdd:TIGR04523 236 KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK--ELK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 948 DELRLKERSVEELQLKLTKANENASFLQKSIGEvtLKAE--------QSQQQAARKHEEEKKELEEKLLELEKKMETSYN 1019
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQNNKIISQLNEQISQ--LKKEltnsesenSEKQRELEEKQNEIEKLKKENQSYKQEIKNLES 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1020 QCQDLKAKYEKASSETKTKHEEI--LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKA--KAAQTAEDAMQIME 1095
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIkkLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIikNLDNTRESLETQLK 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1096 QMTKEKTETLASLEDTKQTNARLQNELDTLKENNlktveelNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQ 1175
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK-------KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1176 EENVKLAEELGRtrdevtshQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADE---EKASLQKSISLTSALLTEKD 1252
Cdd:TIGR04523 545 DELNKDDFELKK--------ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQkekEKKDLIKEIEEKEKKISSLE 616
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 568937393 1253 AELEKLRNEvtvlrgenatAKSLHSVVQTLESDKVKLELKVKNLELQLKENK 1304
Cdd:TIGR04523 617 KELEKAKKE----------NEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-807 |
2.52e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALA---RDGHDQHVLELEAKMDQ 411
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAeeeLEEAEAELAEAEEALLE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 412 LRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKspisEDPENTQTKLEHARTKELEQSLLFEKTKAD 491
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER----LERLEEELEELEEALAELEEEEEEEEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 492 KLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQE-------ISALQEKLEAIHTD 564
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkAALLLAGLRGLAGA 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 565 HQGEMTSLKEHFGAREEAFQKEIKALHTATE----------KLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQ 634
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDevaaaaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 635 QAMEELKVSFSKGIGTDSAEFAELKTQIERLR----LDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLE 710
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRravtLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 711 AVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEgkLELE 790
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP--PDLE 763
|
490
....*....|....*..
gi 568937393 791 TLRQQLEGAEKQIKNLE 807
Cdd:COG1196 764 ELERELERLEREIEALG 780
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
659-1210 |
2.73e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.53 E-value: 2.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 659 KTQIERLRLDYQHEIESLQS----KQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKL 734
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAqieeKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV-LEEHEERREEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 735 QEAEikvKELEVLQAKYTEqsevignftsqlsAVKEKlldlDALRKansegklELETLRQQLEGAEKQIKNLETERNAES 814
Cdd:PRK02224 254 ETLE---AEIEDLRETIAE-------------TERER----EELAE-------EVRDLRERLEELEEERDDLLAEAGLDD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 815 SKANSITKELQEKELVLTGLQDSLNQV-------NQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQF 887
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECrvaaqahNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 888 NVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAeimkmsgdnssqltkmndELRLKERSVEElqlkltKA 967
Cdd:PRK02224 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA------------------ELEATLRTARE------RV 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 968 NENASFLqksigEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKT-----KHEEI 1042
Cdd:PRK02224 443 EEAEALL-----EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAedrieRLEER 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1043 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQAD-KAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNE 1121
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1122 LDTLkENNLKTVEELNKSKELL-----------------------SVENQKMEEFKKEIETLKQAAAQKSQQLSALQEEN 1178
Cdd:PRK02224 598 LAAI-ADAEDEIERLREKREALaelnderrerlaekrerkreleaEFDEARIEEAREDKERAEEYLEQVEEKLDELREER 676
|
570 580 590
....*....|....*....|....*....|..
gi 568937393 1179 VKLAEELGRTRDEVTSHQKLEEERSVLNNQLL 1210
Cdd:PRK02224 677 DDLQAEIGAVENELEELEELRERREALENRVE 708
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
950-1302 |
3.84e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 3.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 950 LRLKERSvEELQLKLTKANENASFLQKSIGEV-----TL-----KAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 1019
Cdd:TIGR02168 168 SKYKERR-KETERKLERTRENLDRLEDILNELerqlkSLerqaeKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1020 QCQDLKAKYEKASSETKTKHEEILQNLQKMLADtEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEDAMQIMEQMTK 1099
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALANEISRLEQQ--KQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1100 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENV 1179
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1180 KLAEELGRTRDEVtshQKLEEERSVLNNQLLEMKKSLPSNTLRESEfrkdadEEKASLQKSISLTSALLTEKDAELEKLR 1259
Cdd:TIGR02168 404 RLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAELEELE------EELEELQEELERLEEALEELREELEEAE 474
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568937393 1260 NEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKE 1302
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
894-1309 |
5.39e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.40 E-value: 5.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 894 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSV----------EELQLK 963
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekevkelEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 964 LTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELE-KKMETSYNQCQDLKAKYEKASSE---TKTKH 1039
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElKEKAEEYIKLSEFYEEYLDELREiekRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1040 EEILQNLQKMLADTEDK---LKAAQEANRDLMQDMEELKtqadkaKAAQTAEDAMQIMEQMTKEKTETlasledTKQTNA 1116
Cdd:PRK03918 320 EEEINGIEERIKELEEKeerLEELKKKLKELEKRLEELE------ERHELYEEAKAKKEELERLKKRL------TGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1117 RLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEEN-----VKLAEELGRTRDE 1191
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1192 VtshQKLEEERSVLNNQLLEMKKSLpSNTLRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENAT 1271
Cdd:PRK03918 468 L---KEIEEKERKLRKELRELEKVL-KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430
....*....|....*....|....*....|....*...
gi 568937393 1272 AKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSS 1309
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
368-966 |
9.37e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 9.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 368 AERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEE 447
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 448 SITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVA----TVSEKSRIMELEKDLALRAQ 523
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAeeakKKAEEAKKADEAKKKAEEAK 1483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 524 EVAELRRRLESSKPPGD----VDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKalhtATEKLSK 599
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADeakkAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK----KAEELKK 1559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 600 ENEslRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKV----SFSKGIGTDSAEFAELKTQIERLRLDYQHEIES 675
Cdd:PTZ00121 1560 AEE--KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLyeeeKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 676 LQSKQDSE-RSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQ 754
Cdd:PTZ00121 1638 LKKKEAEEkKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 755 SEVIGNftsqlsAVKEKLLDLDALRKANSEGKLELETLRQQlEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGL 834
Cdd:PTZ00121 1718 AEELKK------AEEENKIKAEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 835 QDSLNQVNQVKETLEKE-------------LQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSElEKLRENL 901
Cdd:PTZ00121 1791 KRRMEVDKKIKDIFDNFaniieggkegnlvINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGE-DGNKEAD 1869
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568937393 902 TDMEAKFKEKDDREDQLVKAKEKLENDIAEIM----KMSGDNSSQLTKMNDELRLKERSVEELQLKLTK 966
Cdd:PTZ00121 1870 FNKEKDLKEDDEEEIEEADEIEKIDKDDIEREipnnNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIK 1938
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
821-1358 |
2.69e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 65.20 E-value: 2.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 821 TKELQEK-ELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLH-------QKEEQFNVLSS 892
Cdd:pfam01576 17 VKERQQKaESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHelesrleEEEERSQQLQN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 893 ELEKLRENLTDMEAKFKEKDDREDQL----VKAKEKLENDIAEIMKMSGDNSsqltKMNDELRLKERSVEELQLKLTKAN 968
Cdd:pfam01576 97 EKKKMQQHIQDLEEQLDEEEAARQKLqlekVTTEAKIKKLEEDILLLEDQNS----KLSKERKLLEERISEFTSNLAEEE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 969 ENASFLQK---------SIGEVTLKAEQSQQQAARKHEEEKKELEEKLLElekkmetsynQCQDLKAKYEKASSETKTKH 1039
Cdd:pfam01576 173 EKAKSLSKlknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQE----------QIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1040 EEiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQ--IMEQMTKEKTEtlasLEDTKQTNAr 1117
Cdd:pfam01576 243 EE-LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdLGEELEALKTE----LEDTLDTTA- 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1118 LQNELDTLKENNL----KTVEELNKS-----KELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELgrt 1188
Cdd:pfam01576 317 AQQELRSKREQEVtelkKALEEETRSheaqlQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAEL--- 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1189 RDEVTSHQKLEEERSVLNNQLLEMKKSLpSNTLREsefRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE 1268
Cdd:pfam01576 394 RTLQQAKQDSEHKRKKLEGQLQELQARL-SESERQ---RAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQ 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1269 NATAKSLhsvVQTLESDKVKLELKVKNLELQLKENKRQLSsssgntdaqaEEDERAQESQQMIDFLNSVIVDLQRKNQDL 1348
Cdd:pfam01576 470 LQDTQEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLE----------EEEEAKRNVERQLSTLQAQLSDMKKKLEED 536
|
570
....*....|
gi 568937393 1349 KMKVEMMSEA 1358
Cdd:pfam01576 537 AGTLEALEEG 546
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
487-1160 |
3.93e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.66 E-value: 3.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 487 KTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHq 566
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELE-----NELNLLEKEKLNIQKNIDKIKNKL- 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 567 gemtSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSD---VIALWKSKLETAIASHQQAMEELK-- 641
Cdd:TIGR04523 197 ----LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQLKDEQNKIKKQLSek 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 642 ----VSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLD 717
Cdd:TIGR04523 273 qkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 718 SAEDqhlvemeDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDalrKANSEGKLELETLRQQLE 797
Cdd:TIGR04523 353 NSES-------ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE---KLNQQKDEQIKKLQQEKE 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 798 GAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKekfastseeavsaqtrmqdtv 877
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK--------------------- 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 878 NKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR--LKER 955
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEK 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 956 SVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQaarkheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEt 1035
Cdd:TIGR04523 562 EIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE--------KKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI- 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1036 KTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADkakaaqtaeDAMQIMEQMTKEKTETlaslEDTKQTN 1115
Cdd:TIGR04523 633 IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID---------DIIELMKDWLKELSLH----YKKYITR 699
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 568937393 1116 ARLQNELDTLKENNLKTVEELnkskellsvenQKMEEFKKEIETL 1160
Cdd:TIGR04523 700 MIRIKDLPKLEEKYKEIEKEL-----------KKLDEFSKELENI 733
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
648-1161 |
2.46e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 648 IGTDSAEFAELKTQIErlrldyqhEIESLQSKQDSERSAHAKEMETMQ------AKLMKIIKEKEDSLEAVKARLDSAED 721
Cdd:PRK03918 195 IKEKEKELEEVLREIN--------EISSELPELREELEKLEKEVKELEelkeeiEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 722 QhLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKA-------NSEGKLELETLRQ 794
Cdd:PRK03918 267 R-IEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGieerikeLEEKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 795 QLEGAEKQIKNLEtERNAESSKANSITKELQEKELVLTG-----LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAvsa 869
Cdd:PRK03918 346 KLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGltpekLEKELEELEKAKEEIEEEISKITARIGELKKEI--- 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 870 qTRMQDTVNKLHQKEEQFNVLSSEL---------EKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNS 940
Cdd:PRK03918 422 -KELKKAIEELKKAKGKCPVCGRELteehrkellEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 941 SQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEV-TLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYN 1019
Cdd:PRK03918 501 LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIkSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1020 Q------------CQDLKAKYEKASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTA 1087
Cdd:PRK03918 581 ElgfesveeleerLKELEPFYNEYLELKDAEKE--LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1088 EDAMQIMEQMTK------EKTETLASLEDTKQTNARLQNELdtlkENNLKTVEELNKSKELLSVENQKMEEFKKEIETLK 1161
Cdd:PRK03918 659 EEYEELREEYLElsrelaGLRAELEELEKRREEIKKTLEKL----KEELEEREKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
584-1307 |
4.25e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 61.28 E-value: 4.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 584 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVIA------LWKSKLETAIAS----------HQQAMEELKVSFSKG 647
Cdd:pfam05483 112 RKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 648 IGTDSAEFAELKTQIERLRLDYQHEIeslqsKQDSERSAHAKEmetmqaKLMKIIKEKEDSLEAVKARLDSAEDQhlveM 727
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKL-----KEDHEKIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK----M 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 728 EDTLNKLQEAEIKVKELEvlqAKYTEQSEVIGNFTSQLSAVKEKLLDLD-ALRKANSEGKleleTLRQQLEGAEKQIKNL 806
Cdd:pfam05483 257 KDLTFLLEESRDKANQLE---EKTKLQDENLKELIEKKDHLTKELEDIKmSLQRSMSTQK----ALEEDLQIATKTICQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 807 ETERNAESSKANsitKELQEKELVLTGLQDSLNqvnqvkeTLEKELQTLKEKfastseeavsaqtrmqdtvnkLHQKEEQ 886
Cdd:pfam05483 330 TEEKEAQMEELN---KAKAAHSFVVTEFEATTC-------SLEELLRTEQQR---------------------LEKNEDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 887 FNVLSSELEKLRENLTDMeAKFKEKDDREDQLVKA----KEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQL 962
Cdd:pfam05483 379 LKIITMELQKKSSELEEM-TKFKNNKEVELEELKKilaeDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEI 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 963 KLTKANENASFLQKSIGEVTLKAEQSQQqaarKHEEEKKELEEKLLELEKKMETSYNQCQDLKaKYEKASSETKTKHEEI 1042
Cdd:pfam05483 458 QLTAIKTSEEHYLKEVEDLKTELEKEKL----KNIELTAHCDKLLLENKELTQEASDMTLELK-KHQEDIINCKKQEERM 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1043 LQNLQKmLADTEDKLKAAQEANRdlmqdmEELKTQADKAKAAQtaedamqimeqmtkektetlasleDTKQTNARLQNEL 1122
Cdd:pfam05483 533 LKQIEN-LEEKEMNLRDELESVR------EEFIQKGDEVKCKL------------------------DKSEENARSIEYE 581
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1123 DTLKENNLKTVE-ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRdevtshQKLEEE 1201
Cdd:pfam05483 582 VLKKEKQMKILEnKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK------QKFEEI 655
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1202 RSVLNNQlLEMKKSLPSNTLRESEFRKDADEEKASLQKSISL-TSALLTEKDAELEKLRNEVTVLRGENATAKSLH-SVV 1279
Cdd:pfam05483 656 IDNYQKE-IEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKrCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYkNKE 734
|
730 740
....*....|....*....|....*...
gi 568937393 1280 QTLESDKVKLELKVKNLELQLKENKRQL 1307
Cdd:pfam05483 735 QEQSSAKAALEIELSNIKAELLSLKKQL 762
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
354-899 |
4.65e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.08 E-value: 4.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALAR-DGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEE 432
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAElEELRAELARLEAELERLEARLDALREELDELEAQIRG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 433 EK-RKVEDLQFRVEEESITKGDLEQKSpisEDPENTQTKLEHARTKELEQsllFEKTKA------DKLQRELEDTRVATV 505
Cdd:COG4913 335 NGgDRLEQLEREIERLERELEERERRR---ARLEALLAALGLPLPASAEE---FAALRAeaaallEALEEELEALEEALA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 506 SEKSRIMELEKDLALRAQEVAELRRRlESSKPPGDVDMSLSLLQEISALQEKLEAIhtdhqGEMTSLKEhfgaREEAFQK 585
Cdd:COG4913 409 EAEAALRDLRRELRELEAEIASLERR-KSNIPARLLALRDALAEALGLDEAELPFV-----GELIEVRP----EEERWRG 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 586 EI-KALHT--------------ATEKLskENESLRSKLDhankenSDVIALWKSKLETAIASHQQAMEELKVSfskgigt 650
Cdd:COG4913 479 AIeRVLGGfaltllvppehyaaALRWV--NRLHLRGRLV------YERVRTGLPDPERPRLDPDSLAGKLDFK------- 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 651 DSAEFAELKTQIERlRLDYqHEIESLQSKQDSERS------------AHAKEMETMQAKLMKIIKEKEDSLEAVKARLDS 718
Cdd:COG4913 544 PHPFRAWLEAELGR-RFDY-VCVDSPEELRRHPRAitragqvkgngtRHEKDDRRRIRSRYVLGFDNRAKLAALEAELAE 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 719 AEDQhlvemedtlnkLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQ------LSAVKEKLLDLDALRKANSEGKLELETL 792
Cdd:COG4913 622 LEEE-----------LAEAEERLEALEAELDALQERREALQRLAEYswdeidVASAEREIAELEAELERLDASSDDLAAL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 793 RQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELqtLKEKFASTSEEAVSAQTR 872
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL--LEERFAAALGDAVERELR 768
|
570 580
....*....|....*....|....*..
gi 568937393 873 mQDTVNKLHQKEEQFNVLSSELEKLRE 899
Cdd:COG4913 769 -ENLEERIDALRARLNRAEEELERAMR 794
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-975 |
6.12e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 60.89 E-value: 6.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLaERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDqlr 413
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNI-EKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE--- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 414 tmVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKspisedpentqTKLEHARTKELEQsllfektKADKL 493
Cdd:pfam05483 235 --INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEK-----------TKLQDENLKELIE-------KKDHL 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 494 QRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSkppgdvdmslslLQEISALQEKLEAIHTDHQGEMTSLK 573
Cdd:pfam05483 295 TKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQ------------MEELNKAKAAHSFVVTEFEATTCSLE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 574 EHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIAL-----WKSKLETAIASHQQAMEELKVSFSKGI 648
Cdd:pfam05483 363 ELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELkkilaEDEKLLDEKKQFEKIAEELKGKEQELI 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 649 G---TDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhlv 725
Cdd:pfam05483 443 FllqAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ--- 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 726 emEDTLNKLQEAEIKVKELEVLQAKYT----EQSEVIGNFTSQLSAVKEKL---------LDLDALRKANSEGKLELE-- 790
Cdd:pfam05483 520 --EDIINCKKQEERMLKQIENLEEKEMnlrdELESVREEFIQKGDEVKCKLdkseenarsIEYEVLKKEKQMKILENKcn 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 791 TLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQ----VKETLEKELQTLKEKFASTSEEA 866
Cdd:pfam05483 598 NLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQkfeeIIDNYQKEIEDKKISEEKLLEEV 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 867 VSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDN-SSQLTK 945
Cdd:pfam05483 678 EKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNiKAELLS 757
|
650 660 670
....*....|....*....|....*....|
gi 568937393 946 MNDELRLKERSVEELQLkltKANENASFLQ 975
Cdd:pfam05483 758 LKKQLEIEKEEKEKLKM---EAKENTAILK 784
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
466-1157 |
1.01e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 466 NTQTKLEHARTKELEQSLLFEKTKADKL----------------------------QRELEDTRVATVSEKSRIMELEKD 517
Cdd:TIGR04523 74 NNKIKILEQQIKDLNDKLKKNKDKINKLnsdlskinseikndkeqknklevelnklEKQKKENKKNIDKFLTEIKKKEKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 518 LALRAQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHqgemtSLKEHFGAREEAFQKEIKALHTATEKL 597
Cdd:TIGR04523 154 LEKLNNKYNDLKKQKEELE-----NELNLLEKEKLNIQKNIDKIKNKL-----LKLELLLSNLKKKIQKNKSLESQISEL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 598 SKENESLRSKLDHANKENSD---VIALWKSKLETAIASHQQAMEELK------VSFSKGIGTDSAEFAELKTQIERLRLD 668
Cdd:TIGR04523 224 KKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQLKDEQNKIKKQLSekqkelEQNNKKIKELEKQLNQLKSEISDLNNQ 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 669 YQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDqhlvemeDTLNKLQEAEIKVKELEVLQ 748
Cdd:TIGR04523 304 KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES-------ENSEKQRELEEKQNEIEKLK 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 749 AKYTEQSEVIGNFTSQLSAVKEKLLDLDalrKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKE 828
Cdd:TIGR04523 377 KENQSYKQEIKNLESQINDLESKIQNQE---KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKE 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 829 LVLTGLQDSLNQVNQVKETLEKELQTLKekfastseeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKF 908
Cdd:TIGR04523 454 LIIKNLDNTRESLETQLKVLSRSINKIK---------------------QNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 909 KEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELR--LKERSVEELQLKLTKANENASFLQKSIGEVTLKAE 986
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 987 QSQQQaarkheeeKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSEtKTKHEEILQNLQKMLADTEDKLKAAQEANRD 1066
Cdd:TIGR04523 593 QKEKE--------KKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI-IKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1067 LMQDMEELKTQADkakaaqtaeDAMQIMEQMTKEKTETlaslEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE 1146
Cdd:TIGR04523 664 IIKKIKESKTKID---------DIIELMKDWLKELSLH----YKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKEL 730
|
730
....*....|.
gi 568937393 1147 NQKMEEFKKEI 1157
Cdd:TIGR04523 731 ENIIKNFNKKF 741
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
564-1382 |
1.96e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 59.29 E-value: 1.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 564 DHQGEMTSLKEHFGAREEAFQKEIKALHT-ATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAM----- 637
Cdd:TIGR00606 87 DVNGEECAVVRSMVCTQKTKKTEFKTLEGvITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSnwpls 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 638 --EELKVSFSKGIgtDSAEFAELKTQIERLRLDYQHEIESLQS-----KQDSERSAHAKEM----ETMQAKLMKIIKEKE 706
Cdd:TIGR00606 167 egKALKQKFDEIF--SATRYIKALETLRQVRQTQGQKVQEHQMelkylKQYKEKACEIRDQitskEAQLESSREIVKSYE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 707 DSLEAVKARLDSAEDQ--HLVEMEDTLNKLQE---------AEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDL 775
Cdd:TIGR00606 245 NELDPLKNRLKEIEHNlsKIMKLDNEIKALKSrkkqmekdnSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDC 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 776 DALRKANSEGKLELETLRQQLEgAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSL-------NQVNQVKETL 848
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELL-VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPfserqikNFHTLVIERQ 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 849 EKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND 928
Cdd:TIGR00606 404 EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKA 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 929 IAEIMKMSgDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQK--------SIGEVTLKAEQSQQQAARKHEEEK 1000
Cdd:TIGR00606 484 ERELSKAE-KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHtttrtqmeMLTKDKMDKDEQIRKIKSRHSDEL 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1001 KELEEKLLELEKKMETSYNQCQDLKAKYEK--------ASSETKTKH-EEILQNLQKMLADTEDKLKAAQeANRDLMQDM 1071
Cdd:TIGR00606 563 TSLLGYFPNKKQLEDWLHSKSKEINQTRDRlaklnkelASLEQNKNHiNNELESKEEQLSSYEDKLFDVC-GSQDEESDL 641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1072 EELKTQADKAK---AAQTAEDAM--QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE 1146
Cdd:TIGR00606 642 ERLKEEIEKSSkqrAMLAGATAVysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKK 721
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1147 NQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKL-------EEERSVLNNQLLEMKKSLPSN 1219
Cdd:TIGR00606 722 EKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLlgtimpeEESAKVCLTDVTIMERFQMEL 801
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1220 TLRESEFRKDADEEKAS-LQKSISLTSALLTEKDAELEKLRNEVTVLRG----ENATAKSLHSVVQTLESDKVKLELKVK 1294
Cdd:TIGR00606 802 KDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHELDTVVSKIELNRKliqdQQEQIQHLKSKTNELKSEKLQIGTNLQ 881
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1295 NLElQLKENKRQLSS--SSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQDLK---MKVEMMSEAALN--GNGEDL 1367
Cdd:TIGR00606 882 RRQ-QFEEQLVELSTevQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKkaqDKVNDIKEKVKNihGYMKDI 960
|
890
....*....|....*
gi 568937393 1368 NSYDSDDQEKQSKKK 1382
Cdd:TIGR00606 961 ENKIQDGKDDYLKQK 975
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
388-1151 |
2.44e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 2.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 388 EQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLE-----EEKRKVED---LQFRVEEESITKGDLEQKSP 459
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdarkaEEARKAEDakrVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 460 ISEDPENTQTKLEHARTKEL---EQSLLFEKTKADKLQRELEDTRVAT----VSEKSRIMELEKDlALRAQEVAELRRRL 532
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAEELrkaEDARKAEAARKAEEERKAEEARKAEdakkAEAVKKAEEAKKD-AEEAKKAEEERNNE 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 533 ESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKAL---HTATEKLSKENESLRSKLD 609
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKaeeAKKADEAKKKAEEAKKKAD 1332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 610 HANKENSDVialwKSKLETAIASHQQAMEELKVSFSKgigtdsAEFAELKTQIERLRLDYQHEiESLQSKQDSERSAHAK 689
Cdd:PTZ00121 1333 AAKKKAEEA----KKAAEAAKAEAEAAADEAEAAEEK------AEAAEKKKEEAKKKADAAKK-KAEEKKKADEAKKKAE 1401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 690 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKE---LEVLQAKYTEQSEvignfTSQLS 766
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkAEEAKKKAEEAKK-----ADEAK 1476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 767 AVKEKLLDLDALRKANSEGKLELETLRQQlegAEKQIKNLETERNAESSKANSITKELQEKElvltglQDSLNQVNQVK- 845
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKA---AEAKKKADEAKKAEEAKKADEAKKAEEAKK------ADEAKKAEEKKk 1547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 846 -ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDdrEDQLVKAKEk 924
Cdd:PTZ00121 1548 aDELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA--EEAKIKAEE- 1624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 925 lendiaeimkmsgdnssqlTKMNDELRlkeRSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELE 1004
Cdd:PTZ00121 1625 -------------------LKKAEEEK---KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1005 EKLLelekkmETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQD---MEELKT-QADK 1080
Cdd:PTZ00121 1683 AEED------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDkkkAEEAKKdEEEK 1756
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568937393 1081 AKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLK-ENNLKTVEELNKSKELLSVENQKME 1151
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDiFDNFANIIEGGKEGNLVINDSKEME 1828
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
427-956 |
3.19e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 3.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 427 LNQLEEEKRKVEDLQFRVEE-ESITKGDLEQKSPISEDPENTQTkleHARTKELEQsllfektKADKLQRELEDTRvatv 505
Cdd:PRK02224 161 LGKLEEYRERASDARLGVERvLSDQRGSLDQLKAQIEEKEEKDL---HERLNGLES-------ELAELDEEIERYE---- 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 506 SEKSRIMELEKDLALRAQEVAELRRRLESskppgdvdmslsLLQEISALQEKLEAIHTDhqgemtslkehfgarEEAFQK 585
Cdd:PRK02224 227 EQREQARETRDEADEVLEEHEERREELET------------LEAEIEDLRETIAETERE---------------REELAE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 586 EIKALHTATEKLSKENESLRSKLDHANKEnSDVIALWKSKLETAIASHQQAMEELKVSFSkgigtdsaefaELKTQIERL 665
Cdd:PRK02224 280 EVRDLRERLEELEEERDDLLAEAGLDDAD-AEAVEARREELEDRDEELRDRLEECRVAAQ-----------AHNEEAESL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 666 RldyqHEIESLQSKQDSERSAhAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhlveMEDTLNKLQEAEikvKELE 745
Cdd:PRK02224 348 R----EDADDLEERAEELREE-AAELESELEEAREAVEDRREEIEELEEEIEELRER----FGDAPVDLGNAE---DFLE 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 746 VLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKA-----------NSEGKLELETLRQQLEGAEKQIKNLETERNAES 814
Cdd:PRK02224 416 ELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpveGSPHVETIEEDRERVEELEAELEDLEEEVEEVE 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 815 SKANSItKELQEKElvltglqDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSEL 894
Cdd:PRK02224 496 ERLERA-EDLVEAE-------DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568937393 895 EKLRENLTDMEAKFKEKDDREDQLVKAKEKLEnDIAEIMKMSG---DNSSQLTKMNDELR--LKERS 956
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERIRTLLA-AIADAEDEIErlrEKREALAELNDERRerLAEKR 633
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
754-972 |
3.19e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 3.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 754 QSEVIGNFTSQLSAVKEKLL----DLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKEL 829
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAelekELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 830 VLTGLQDSLNQVNQvkeTLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 909
Cdd:COG4942 98 ELEAQKEELAELLR---ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568937393 910 EKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENAS 972
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
427-981 |
5.66e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 5.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 427 LNQLEEEKRKVEDLQFRVEEESITK-GDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKAD-KLQRELEDTRVAT 504
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiKNKLLKLELLLSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 505 VSEK-SRIMELEKDLALRAQEVAELRRRLESSKppgdvdmslsllQEISALQEKLEAIHTDHQgEMTSLKEHFGAREEAF 583
Cdd:TIGR04523 206 LKKKiQKNKSLESQISELKKQNNQLKDNIEKKQ------------QEINEKTTEISNTQTQLN-QLKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 584 QKEIKALHTATEKLSKENESLRSKLDHANKENSDVialWKSKLETAIASHQQAMEELKVSFSKGIGTDSaefaELKTQIE 663
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQD---WNKELKSELKNQEKKLEEIQNQISQNNKIIS----QLNEQIS 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 664 RLRLDYQHeieslqskQDSERSAHAKEMETMQAKLMKIIKEKE---DSLEAVKARLDSAEDQhlVEMEDTLNKLQEAEIK 740
Cdd:TIGR04523 346 QLKKELTN--------SESENSEKQRELEEKQNEIEKLKKENQsykQEIKNLESQINDLESK--IQNQEKLNQQKDEQIK 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 741 V---------KELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKAN----SEGKLELETLRQQLEGAEKQIKnle 807
Cdd:TIGR04523 416 KlqqekelleKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLetqlKVLSRSINKIKQNLEQKQKELK--- 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 808 tERNAESSKANSITKELQEKELVLTGLQDSLN----QVNQVKETLEKELQTLKEKFAStseeavsaqtrmQDTVNKLHQK 883
Cdd:TIGR04523 493 -SKEKELKKLNEEKKELEEKVKDLTKKISSLKekieKLESEKKEKESKISDLEDELNK------------DDFELKKENL 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 884 EEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLK 963
Cdd:TIGR04523 560 EKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSK 639
|
570
....*....|....*...
gi 568937393 964 LTKANENASFLQKSIGEV 981
Cdd:TIGR04523 640 KNKLKQEVKQIKETIKEI 657
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
735-1306 |
9.62e-08 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 56.68 E-value: 9.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 735 QEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAES 814
Cdd:pfam07111 63 QQAELISRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQREL 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 815 SKANSITKElqEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSEL 894
Cdd:pfam07111 143 EEIQRLHQE--QLSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLV 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 895 EKLRENLTDM---EAKFKEKDDREDQLVKAKEKLENDIAEI---MKMSGDNSSQLTKM----NDELRLKERSVEELQLKL 964
Cdd:pfam07111 221 ESLRKYVGEQvppEVHSQTWELERQELLDTMQHLQEDRADLqatVELLQVRVQSLTHMlalqEEELTRKIQPSDSLEPEF 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 965 TKANEN--ASFLQKSIG-EVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQC-QDLKAKYEKASSETKT--- 1037
Cdd:pfam07111 301 PKKCRSllNRWREKVFAlMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRAlQDKAAEVEVERMSAKGlqm 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1038 ---KHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA---------------AQTAEDAMQIMEQMTK 1099
Cdd:pfam07111 381 elsRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVAripslsnrlsyavrkVHTIKGLMARKVALAQ 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1100 EKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVE---------------NQKMEEFKKEIETLKQAA 1164
Cdd:pfam07111 461 LRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEvgrareqgeaerqqlSEVAQQLEQELQRAQESL 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1165 AQKSQQLSALQEENVKLAEELGRTRDEVTSHQK-----LEEERSVLNNQLLEmkkSLPSNTLRESEFRKDADEEKASLQK 1239
Cdd:pfam07111 541 ASVGQQLEVARQGQQESTEEAASLRQELTQQQEiygqaLQEKVAEVETRLRE---QLSDTKRRLNEARREQAKAVVSLRQ 617
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568937393 1240 sISLTSALLTEKDAELEKLRNEVTVLRGENATAKslhsvVQTLESDKvKLELKVKNLELQLKENKRQ 1306
Cdd:pfam07111 618 -IQHRATQEKERNQELRRLQDEARKEEGQRLARR-----VQELERDK-NLMLATLQQEGLLSRYKQQ 677
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
337-849 |
1.04e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 337 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDqhvleleakmdqlrtmV 416
Cdd:PRK02224 241 EVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG----------------L 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 417 EAADREKVELlnQLEEEKRKVEDLQFRVEEESITKGDLeqkspisedpeNTQTKLEHARTKELEQSLLFEKTKADKLQRE 496
Cdd:PRK02224 305 DDADAEAVEA--RREELEDRDEELRDRLEECRVAAQAH-----------NEEAESLREDADDLEERAEELREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 497 LEDTRVATVSEKSRIMELEKdlalraqEVAELRRRLESSkpPGDVDMSLSLLQEisaLQEKLEAIHTDHQGEMTSLKEHF 576
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEE-------EIEELRERFGDA--PVDLGNAEDFLEE---LREERDELREREAELEATLRTAR 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 577 GAREEAFQ-----------KEIK-ALHTAT--------EKLSKENESLRSKLDHANKENSDVIALwkSKLETAIASHQQA 636
Cdd:PRK02224 440 ERVEEAEAlleagkcpecgQPVEgSPHVETieedrervEELEAELEDLEEEVEEVEERLERAEDL--VEAEDRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 637 MEELkvsfSKGIGTDSAEFAELKTQIERLRldyqHEIESLQSKQDSERSAHAKEMETMQAKLMKiIKEKEDSLEAVKARL 716
Cdd:PRK02224 518 REDL----EELIAERRETIEEKRERAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREE-VAELNSKLAELKERI 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 717 DSAEDqhlveMEDTLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKAN--SEGKLELETLRQ 794
Cdd:PRK02224 589 ESLER-----IRTLLAAIADAE---DEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAriEEAREDKERAEE 660
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 568937393 795 QLEGAEKQIKNLETERNAESSKANSITKELQEkelvLTGLQDSLNQVNQVKETLE 849
Cdd:PRK02224 661 YLEQVEEKLDELREERDDLQAEIGAVENELEE----LEELRERREALENRVEALE 711
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1424-1440 |
1.05e-07 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.00 E-value: 1.05e-07
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
375-1359 |
2.43e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 375 AEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVE---AADREKVELLNQLEEEKRKVEDLQFRVEEESITK 451
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETElcaEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 452 GDLEQkspisedpentQTKLEHARTKELEQSLLFEKTKADKLQREledtrvaTVSEKSRIMELEKDLALRAQEVAELRRr 531
Cdd:pfam01576 92 QQLQN-----------EKKKMQQHIQDLEEQLDEEEAARQKLQLE-------KVTTEAKIKKLEEDILLLEDQNSKLSK- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 532 lESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLkehfgarEEAFQKEikalhtatEKLSKENESLRSKLDHA 611
Cdd:pfam01576 153 -ERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDL-------EERLKKE--------EKGRQELEKAKRKLEGE 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 612 NKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgigtdSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEM 691
Cdd:pfam01576 217 STDLQEQIAELQAQIAELRAQLAKKEEELQAALAR-----LEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAE 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 692 ET---MQAKLMKIIKEKEDSLE--AVKARLDSAEDQHLVEMEDTLnklqEAEIKVKELEVLQAKyTEQSEVIGNFTSQLS 766
Cdd:pfam01576 292 KQrrdLGEELEALKTELEDTLDttAAQQELRSKREQEVTELKKAL----EEETRSHEAQLQEMR-QKHTQALEELTEQLE 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 767 AVKEKLLDLD----ALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVN 842
Cdd:pfam01576 367 QAKRNKANLEkakqALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVS 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 843 QVKETLEKELQTLkekfastSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAK 922
Cdd:pfam01576 447 SLLNEAEGKNIKL-------SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQL 519
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 923 EKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQS--QQQAARKHEEEK 1000
Cdd:pfam01576 520 STLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLlvDLDHQRQLVSNL 599
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1001 KELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLadteDKLKAAQEANRDLMQDMEEL-KTQAD 1079
Cdd:pfam01576 600 EKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEAL----EAKEELERTNKQLRAEMEDLvSSKDD 675
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1080 KAKAAQTAEDAMQIMEQMTKEKTETLASLED----TKQTNARLQNELDTLK---ENNLKTVEELNKSKE-LLSVENQKME 1151
Cdd:pfam01576 676 VGKNVHELERSKRALEQQVEEMKTQLEELEDelqaTEDAKLRLEVNMQALKaqfERDLQARDEQGEEKRrQLVKQVRELE 755
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1152 -EFKKEIETLKQAAAQKSQQLSALQEENVKLaEELGRTRDE-VTSHQKLEEERSVLNNQLLEMKKSLPS--NTLRESEfR 1227
Cdd:pfam01576 756 aELEDERKQRAQAVAAKKKLELDLKELEAQI-DAANKGREEaVKQLKKLQAQMKDLQRELEEARASRDEilAQSKESE-K 833
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1228 KDADEEKASLQKSISLTSALLTEKDAELEklRNEVTVLRGENATAKSLhsvvqtLESDKVKLELKVKNLELQLKE----- 1302
Cdd:pfam01576 834 KLKNLEAELLQLQEDLAASERARRQAQQE--RDELADEIASGASGKSA------LQDEKRRLEARIAQLEEELEEeqsnt 905
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1303 ---NKRQLSSSSGNTDAQAEEDERAQESQQmidfLNSVIVDLQRKNQDLKMKVEMMSEAA 1359
Cdd:pfam01576 906 ellNDRLRKSTLQVEQLTTELAAERSTSQK----SESARQQLERQNKELKAKLQEMEGTV 961
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
775-931 |
3.05e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.00 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 775 LDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKE--TLEKEL 852
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyeALQKEI 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568937393 853 QTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLtdmEAKFKEKDDREDQLVKAKEKLENDIAE 931
Cdd:COG1579 99 ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL---DEELAELEAELEELEAEREELAAKIPP 174
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
578-1180 |
3.13e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.36 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 578 AREEAFQKEIKALHTATEKLSKENESLR-----SKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDS 652
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPlaahiKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 653 AEFAELKTQIERLRLDYQHEIESLQSKQDSERS-----AHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAED---QHL 724
Cdd:TIGR00618 347 LQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRdlqGQL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 725 VEMEDTlnklQEAEIKVKELEVLQAKYTEQSEVIGNFTSQ-----LSAVKEKLLDLDALRKANSEGKLELETLRQQLEGA 799
Cdd:TIGR00618 427 AHAKKQ----QELQQRYAELCAAAITCTAQCEKLEKIHLQesaqsLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 800 EKQIKNLETERNAESSKANsitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNK 879
Cdd:TIGR00618 503 PCPLCGSCIHPNPARQDID----NPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 880 LHQKEEQFNVLSSELEKLREnLTDMEAKFKEKDDREDQLVKAKEKLENDIAEImkmsgdnSSQLTKMNDELRLKERSVEE 959
Cdd:TIGR00618 579 DNRSKEDIPNLQNITVRLQD-LTEKLSEAEDMLACEQHALLRKLQPEQDLQDV-------RLHLQQCSQELALKLTALHA 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 960 LQLKLTKANENASFLQ--------KSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKA 1031
Cdd:TIGR00618 651 LQLTLTQERVREHALSirvlpkelLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSL 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1032 SSETKTKHEEILQNLQKMLADTEDKLKAAQEAN-RDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLE- 1109
Cdd:TIGR00618 731 GSDLAAREDALNQSLKELMHQARTVLKARTEAHfNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGq 810
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568937393 1110 --DTKQTNARLQNELDTLKENNLKT-VEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1180
Cdd:TIGR00618 811 eiPSDEDILNLQCETLVQEEEQFLSrLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQI 884
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
788-994 |
3.75e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 788 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAV 867
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 868 SAQTRMQDTVNKLHQKEEQ----FNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQL 943
Cdd:COG4942 101 AQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568937393 944 TKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAAR 994
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
402-1128 |
4.13e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.84 E-value: 4.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 402 VLELEAKMDQLRTMVEA--ADREKVELLNQLEEEK--RKVEDLQFRVeeesitkgDLEQKSPISEDPENTQTKLEHArtk 477
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAilEDDGVVPPKSRLNRQQveHWIRDIQAIA--------GIMKIRPEFTKLQQEFNTLESA--- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 478 ELEQSLLFEKTKADKLQRELEDTRVATVSE--KSRIMELEKDLAlraQEVAELRRRLESSKppgdvdmslsllQEISALQ 555
Cdd:pfam12128 257 ELRLSHLHFGYKSDETLIASRQEERQETSAelNQLLRTLDDQWK---EKRDELNGELSAAD------------AAVAKDR 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 556 EKLEAIHTDH----QGEMTSLKEH------FGAREEAFQKEIKALHTATEKLSKENESLRSKLDhanKENSDVIALWKSK 625
Cdd:pfam12128 322 SELEALEDQHgaflDADIETAAADqeqlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 626 LE----------TAIASHQQAME-ELKVSFSKGIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAhaKEMETM 694
Cdd:pfam12128 399 LAkireardrqlAVAEDDLQALEsELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFD--ERIERA 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 695 QAKLMKIIKEKEDsLEAVKARLDSAEDQHLVemedtlnKLQEAEIKVKELEvlqakyteqsevignftSQLSAVKEKLLD 774
Cdd:pfam12128 477 REEQEAANAEVER-LQSELRQARKRRDQASE-------ALRQASRRLEERQ-----------------SALDELELQLFP 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 775 ldalrkanSEGKLeLETLRQQLEGAEKQI-KNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVnQVKETLEKElQ 853
Cdd:pfam12128 532 --------QAGTL-LHFLRKEAPDWEQSIgKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRI-DVPEWAASE-E 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 854 TLKEKFASTSEEAVSAQTRMQdtvnklhQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKE----KLENDI 929
Cdd:pfam12128 601 ELRERLDKAEEALQSAREKQA-------AAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQsekdKKNKAL 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 930 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQ--LKLTKANENASFLQKSIG----------------EVTLKAEQSQQQ 991
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQkeQKREARTEKQAYWQVVEGaldaqlallkaaiaarRSGAKAELKALE 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 992 AARKHEEEKK----ELEEKLLELEKKMETSYNQCQDLKAK------------------YEKASSETKTKHEEILQNLQKM 1049
Cdd:pfam12128 754 TWYKRDLASLgvdpDVIAKLKREIRTLERKIERIAVRRQEvlryfdwyqetwlqrrprLATQLSNIERAISELQQQLARL 833
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1050 LADTEDKLKAAQ---EANRDLMQDMEELKTQAD--KAKAAQTAEDAMQimEQMTKEKTETLASLEDTKQTNARLQNELDT 1124
Cdd:pfam12128 834 IADTKLRRAKLEmerKASEKQQVRLSENLRGLRceMSKLATLKEDANS--EQAQGSIGERLAQLEDLKLKRDYLSESVKK 911
|
....
gi 568937393 1125 LKEN 1128
Cdd:pfam12128 912 YVEH 915
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
711-932 |
6.96e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 711 AVKARLDSAEDQ--HLVEMEDTLNKLQEaeiKVKELEVLQAKYTEqsevignftsqLSAVKEKLLDLDALRKAnsegkLE 788
Cdd:COG4913 222 DTFEAADALVEHfdDLERAHEALEDARE---QIELLEPIRELAER-----------YAAARERLAELEYLRAA-----LR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 789 LETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQV-NQVKETLEKELQTLKEKFastsEEAV 867
Cdd:COG4913 283 LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLEREL----EERE 358
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568937393 868 SAQTRMQDTVNKLHQK----EEQFNVLSSELEKLRENLTDMEAKFKEK----DDREDQLVKAKEKLENDIAEI 932
Cdd:COG4913 359 RRRARLEALLAALGLPlpasAEEFAALRAEAAALLEALEEELEALEEAlaeaEAALRDLRRELRELEAEIASL 431
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
479-1157 |
7.07e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 7.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 479 LEQSLLFEKtkADKLQ---RELEDTRVATVSEKSRIMELE--KDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISA 553
Cdd:COG4913 218 LEEPDTFEA--ADALVehfDDLERAHEALEDAREQIELLEpiRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 554 LQEKLEAIHTDHQGEMTSLKehfgAREEAFQKEIKALHTATEKLSKEN-ESLRSKLDHANKEnsdvialwKSKLETAIAS 632
Cdd:COG4913 296 ELEELRAELARLEAELERLE----ARLDALREELDELEAQIRGNGGDRlEQLEREIERLERE--------LEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 633 HQQAMEELKVSFSkgigTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKemetmqakLMKIIKEKEDSLEAV 712
Cdd:COG4913 364 LEALLAALGLPLP----ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD--------LRRELRELEAEIASL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 713 KARlDSAEDQHLVEMEDTLNklQEAEIKVKEL----EVLQAKYTEQS-----E-VIGNF-TSQLsaVKEKLLDlDALRKA 781
Cdd:COG4913 432 ERR-KSNIPARLLALRDALA--EALGLDEAELpfvgELIEVRPEEERwrgaiErVLGGFaLTLL--VPPEHYA-AALRWV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 782 NSEgKLELetlRQQLEGAEKQIKNLETERnaesSKANSITKELQEKELVLTG-LQDSLNQVNQVK--ETLEkELQtlKEK 858
Cdd:COG4913 506 NRL-HLRG---RLVYERVRTGLPDPERPR----LDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVcvDSPE-ELR--RHP 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 859 FASTSEEAVSAQTRM----------------QDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAK 922
Cdd:COG4913 575 RAITRAGQVKGNGTRhekddrrrirsryvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 923 EKLENDIaeimkmsgdnssqltkmndELRLKERSVEELQLKLTKANENASFLQksigevTLKAEQSQQQAARK-HEEEKK 1001
Cdd:COG4913 655 EYSWDEI-------------------DVASAEREIAELEAELERLDASSDDLA------ALEEQLEELEAELEeLEEELD 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1002 ELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKtkhEEILQNLQKMLADTedklkAAQEANRDLMQDMEElKTQADKA 1081
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR---LELRALLEERFAAA-----LGDAVERELRENLEE-RIDALRA 780
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937393 1082 KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEElnKSKELLsveNQKMEEFKKEI 1157
Cdd:COG4913 781 RLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGLPEYEE--RFKELL---NENSIEFVADL 851
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
708-993 |
8.30e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.76 E-value: 8.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 708 SLEAVKARLDSAEDQhlvemedtlnKLQEAEIK--VKELEvlqakyteqsevignftsqlsavkEKLLDLDALRKAnseg 785
Cdd:PRK11281 37 TEADVQAQLDALNKQ----------KLLEAEDKlvQQDLE------------------------QTLALLDKIDRQ---- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 786 KLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKeLVLTGLQDSLNQVNQvketlekELQTLKEKFASTSEE 865
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLST-LSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 866 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiaeimKMSGDNSSQLTk 945
Cdd:PRK11281 151 LVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQ-------RKSLEGNTQLQ- 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 568937393 946 mndELRLKERsvEELQLKLTKANENASFLQKSIGEVTLkaEQSQQQAA 993
Cdd:PRK11281 223 ---DLLQKQR--DYLTARIQRLEHQLQLLQEAINSKRL--TLSEKTVQ 263
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
789-1212 |
8.76e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 8.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 789 LETLRQQLEGA-EKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEE-- 865
Cdd:COG4717 40 LAFIRAMLLERlEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEle 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 866 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEndiAEIMKMSGDNSSQLTK 945
Cdd:COG4717 120 KLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE---ELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 946 MNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDL- 1024
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIa 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1025 ------------------KAKYEKASSETKTKHEEILQNLQKM-----LADTEDKLKAAQEANRDLMQDMEELKTQADKA 1081
Cdd:COG4717 277 gvlflvlgllallflllaREKASLGKEAEELQALPALEELEEEeleelLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1082 KAAQTAEDAMQIMEQMTK-------EKTETLASLEDTKQTNARLQNELDTLKENnlktVEELNKSKELLSVENQKmEEFK 1154
Cdd:COG4717 357 EELEEELQLEELEQEIAAllaeagvEDEEELRAALEQAEEYQELKEELEELEEQ----LEELLGELEELLEALDE-EELE 431
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 568937393 1155 KEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEvTSHQKLEEERSVLNNQLLEM 1212
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELREL 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
834-1089 |
1.20e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 834 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDD 913
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 914 REDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMndeLRLKERSVEELQLKLTKanenasfLQKSIGEVTLKAEQSQQQAA 993
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAEE-------LRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 994 RKheeekkeleekllelekkmETSYNQCQDLKAKYEKAssetKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEE 1073
Cdd:COG4942 175 EL-------------------EALLAELEEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250
....*....|....*.
gi 568937393 1074 LKTQADKAKAAQTAED 1089
Cdd:COG4942 232 LEAEAAAAAERTPAAG 247
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
334-1203 |
2.01e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.48 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 334 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHVGEIEQELALARdgHDQHVLELEAKMDQLR 413
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKK--LEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 414 TMVEAADREKVELLNQLEEEKRKVEDLqfrveeesiTKGDLEQKSPISEdpentqtkLEHARTKELEQSLLFEKTKAdKL 493
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSL---------SKLKNKHEAMISD--------LEERLKKEEKGRQELEKAKR-KL 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 494 QRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLE-SSKPPGDVDMSLSLLQ-EISALQEKLEAiHTDHQGEMTS 571
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEeETAQKNNALKKIRELEaQISELQEDLES-ERAARNKAEK 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 572 LKEHFGAREEAFQKEIKalhtATEKLSKENESLRSKLDHAnkensdvIALWKSKLETAIASHQQAMEELKVSFSKGIgtd 651
Cdd:pfam01576 293 QRRDLGEELEALKTELE----DTLDTTAAQQELRSKREQE-------VTELKKALEEETRSHEAQLQEMRQKHTQAL--- 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 652 sAEFAELKTQIERLRLDYQHEIESLQskqdSERSAHAKEMETMQAKLMKI---IKEKEDSLEAVKARLDSAEDQHlVEME 728
Cdd:pfam01576 359 -EELTEQLEQAKRNKANLEKAKQALE----SENAELQAELRTLQQAKQDSehkRKKLEGQLQELQARLSESERQR-AELA 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 729 DTLNKLQeaeikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLE----GAEKQIK 804
Cdd:pfam01576 433 EKLSKLQ------SELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEdernSLQEQLE 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 805 NLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFastsEEAVSAQTRMQDTVNKLHQKE 884
Cdd:pfam01576 507 EEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL----EEKAAAYDKLEKTKNRLQQEL 582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 885 EQfnvLSSELEKLRENLTDMEAKFKEKDD--REDQLVKAKEKLENDIAEIMKMSGDN-----SSQLTKMNDELRLKERSV 957
Cdd:pfam01576 583 DD---LLVDLDHQRQLVSNLEKKQKKFDQmlAEEKAISARYAEERDRAEAEAREKETralslARALEEALEAKEELERTN 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 958 EELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQcQDLKAKYEKASSETKT 1037
Cdd:pfam01576 660 KQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNM-QALKAQFERDLQARDE 738
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1038 KHEEILQNLQKMLADTEDKLK-------AAQEANRDLMQDMEELKTQADKAKAAQtaEDAMQIMEQMTKEKTETLASLED 1110
Cdd:pfam01576 739 QGEEKRRQLVKQVRELEAELEderkqraQAVAAKKKLELDLKELEAQIDAANKGR--EEAVKQLKKLQAQMKDLQRELEE 816
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1111 TKQTNARLqneLDTLKENN--LKTVE-ELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGR 1187
Cdd:pfam01576 817 ARASRDEI---LAQSKESEkkLKNLEaELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQ 893
|
890
....*....|....*.
gi 568937393 1188 TRDEvtshqkLEEERS 1203
Cdd:pfam01576 894 LEEE------LEEEQS 903
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
878-1215 |
2.15e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 878 NKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAeiMKMSGDNSSQLTKMNDELRLKERSV 957
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLY--LDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 958 EELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSyNQCQDLKAKYEKASSETKT 1037
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE-EKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1038 KHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEdtkqtnAR 1117
Cdd:pfam02463 333 EKEEIEE-LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE------EK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1118 LQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQK 1197
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
330
....*....|....*...
gi 568937393 1198 LEEERSVLNNQLLEMKKS 1215
Cdd:pfam02463 486 LELLLSRQKLEERSQKES 503
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
425-1307 |
2.44e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 425 ELLNQLEEEKRKVED-LQFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDTRVA 503
Cdd:TIGR00606 210 KYLKQYKEKACEIRDqITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 504 TVSEKSRIMELEKdlalrAQEVAELRRRLESSKPpgdvdmslsllQEISALQEKLEAIHTDHQgEMTSLKEHFGAREEAF 583
Cdd:TIGR00606 290 LKMEKVFQGTDEQ-----LNDLYHNHQRTVREKE-----------RELVDCQRELEKLNKERR-LLNQEKTELLVEQGRL 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 584 QKEIKALHTATEKLSKENESL--RSKLDH------ANKENSDVIALWKSKLETAIASHQQAMEELkvsfSKGIGTDSAEF 655
Cdd:TIGR00606 353 QLQADRHQEHIRARDSLIQSLatRLELDGfergpfSERQIKNFHTLVIERQEDEAKTAAQLCADL----QSKERLKQEQA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 656 AELKTQIERLRLDYQHEIESLQSKQdSERSAHAKEMETMQAKlMKIIKEKEDSLEAVKARLDSAEDQHLVE---MEDTLN 732
Cdd:TIGR00606 429 DEIRDEKKGLGRTIELKKEILEKKQ-EELKFVIKELQQLEGS-SDRILELDQELRKAERELSKAEKNSLTEtlkKEVKSL 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 733 KLQEAEIkVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETlrqqLEGAEKQIKNLETERNA 812
Cdd:TIGR00606 507 QNEKADL-DRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTS----LLGYFPNKKQLEDWLHS 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 813 ESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKF--ASTSEEAVSAQTRMQDTVNKLHQKEEQFNVL 890
Cdd:TIGR00606 582 KSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdVCGSQDEESDLERLKEEIEKSSKQRAMLAGA 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 891 SSELEKLRENLTDMEAKFKEKDDREdqlVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANEN 970
Cdd:TIGR00606 662 TAVYSQFITQLTDENQSCCPVCQRV---FQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSI 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 971 ASFLQKSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDLKAKYEkaSSETKTKHEEILQNLQKML 1050
Cdd:TIGR00606 739 IDLKEKEIPELRNKLQKVNRDIQR---------------LKNDIEEQETLLGTIMPEEE--SAKVCLTDVTIMERFQMEL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1051 ADTEDKLkaAQEANRDLMQDMEELKTQADKAKaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNL 1130
Cdd:TIGR00606 802 KDVERKI--AQQAAKLQGSDLDRTVQQVNQEK-----QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1131 KTVEELNKSKELlsveNQKMEEFKKEIETLKQAAAQKSQQLSALQEenvklAEELGRTRDEVTSHQKlEEERSVLNNQLL 1210
Cdd:TIGR00606 875 QIGTNLQRRQQF----EEQLVELSTEVQSLIREIKDAKEQDSPLET-----FLEKDQQEKEELISSK-ETSNKKAQDKVN 944
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1211 EMKKSLPSNTLR----ESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDK 1286
Cdd:TIGR00606 945 DIKEKVKNIHGYmkdiENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD-NLTL 1023
|
890 900
....*....|....*....|.
gi 568937393 1287 VKLELKVKNLELQLKENKRQL 1307
Cdd:TIGR00606 1024 RKRENELKEVEEELKQHLKEM 1044
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
404-1389 |
7.03e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 7.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 404 ELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLqfrveeesitkgdleqkspisedpentQTKLEHARTKELEqsL 483
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHL---------------------------EKEIKDLFDKYLE--I 591
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 484 LFEKTKADKLQRELEDtRVATVSEKSRIMelekdlalraQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKlEAIHT 563
Cdd:TIGR01612 592 DDEIIYINKLKLELKE-KIKNISDKNEYI----------KKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNK-DKIYS 659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 564 DHQGEMTSLkehfgareeaFQKEIKALHTATEKLSKENeslrsklDHANKENsdvialwKSKLEtaiashqqameelkvs 643
Cdd:TIGR01612 660 TIKSELSKI----------YEDDIDALYNELSSIVKEN-------AIDNTED-------KAKLD---------------- 699
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 644 fskgigtdsaefaELKTQIERlrldyqhEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAvkarldsaedqh 723
Cdd:TIGR01612 700 -------------DLKSKIDK-------EYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHG------------ 747
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 724 lvEMEDTLNK-LQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALrkansegkleletlrqqlegaeKQ 802
Cdd:TIGR01612 748 --EINKDLNKiLEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINI----------------------DN 803
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 803 IKNLETERNAESSKANSITKELQEKELVLTglqdslnqVNQVKetlekelqTLKEKFASTSEEAVSAQTRMQDTVNKLHq 882
Cdd:TIGR01612 804 IKDEDAKQNYDKSKEYIKTISIKEDEIFKI--------INEMK--------FMKDDFLNKVDKFINFENNCKEKIDSEH- 866
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 883 keEQFNVLSSEL--EKLRENLTDMEAKFKEkddredqlvkaKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEEL 960
Cdd:TIGR01612 867 --EQFAELTNKIkaEISDDKLNDYEKKFND-----------SKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESI 933
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 961 QLKLTKANENASFLQKSIGevTLKAEQSqqqaarkheeekkeleekllelekkMETSYnqcqdlKAKYEKASSETKTKHE 1040
Cdd:TIGR01612 934 EKFHNKQNILKEILNKNID--TIKESNL-------------------------IEKSY------KDKFDNTLIDKINELD 980
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1041 EILQNLQkmLADTEDKlkaaqeaNRDLMQDMEELKTQADKAKAA------QTAEDAMQIMEQMTKEKTETLASLEDTKQT 1114
Cdd:TIGR01612 981 KAFKDAS--LNDYEAK-------NNELIKYFNDLKANLGKNKENmlyhqfDEKEKATNDIEQKIEDANKNIPNIEIAIHT 1051
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1115 NarLQNELDTLKENNLKTVEELNksKELLSVENQKMEEFKKEIETLKQAAAQksqqlSALQEENVKLAEELGRTRDEV-T 1193
Cdd:TIGR01612 1052 S--IYNIIDEIEKEIGKNIELLN--KEILEEAEINITNFNEIKEKLKHYNFD-----DFGKEENIKYADEINKIKDDIkN 1122
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1194 SHQKLEEERsvlnNQLLEMKKslpsntlrESEfrKDADEEKASLQKSISLTSALLTEKDAE--LEKLRNEVTVLRGEN-- 1269
Cdd:TIGR01612 1123 LDQKIDHHI----KALEEIKK--------KSE--NYIDEIKAQINDLEDVADKAISNDDPEeiEKKIENIVTKIDKKKni 1188
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1270 -ATAKSLHSVVQTLESDKVKLElKVKNLELQLKENKrqlssssgNTDAQAEEDERAQESQQMIDFLNSVIVDLQR-KNQD 1347
Cdd:TIGR01612 1189 yDEIKKLLNEIAEIEKDKTSLE-EVKGINLSYGKNL--------GKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEiKEKS 1259
|
970 980 990 1000
....*....|....*....|....*....|....*....|....
gi 568937393 1348 LKMKVEMMSEAALNGNGEDLNSYDSDDQEKQ--SKKKPRLFCDI 1389
Cdd:TIGR01612 1260 PEIENEMGIEMDIKAEMETFNISHDDDKDHHiiSKKHDENISDI 1303
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
352-1141 |
8.18e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 50.59 E-value: 8.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 352 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVG-----EIEQELALARDGHDQhvleLEAKMDQLRTMVEaaDREKVEL 426
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKtfwspELKKERALRKEEAAR----ISVLKEQYRVTQE--ENQHLQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 427 LNQ-LEEEKRKVEDL-QFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTkadklQRELEdtrvat 504
Cdd:pfam10174 75 TIQaLQDELRAQRDLnQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKT-----LEEME------ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 505 vsekSRIMELEKDLALRAQEVAELRRRLESSKPP-----GDVDMSLSLLQEISALQEkLEAIHTDHQGEMTSLKEHFGAR 579
Cdd:pfam10174 144 ----LRIETQKQTLGARDESIKKLLEMLQSKGLPkksgeEDWERTRRIAEAEMQLGH-LEVLLDQKEKENIHLREELHRR 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 580 EEAFQK--EIKALHTATEKlskeNESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKgigtdsAEFae 657
Cdd:pfam10174 219 NQLQPDpaKTKALQTVIEM----KDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSH------SKF-- 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 658 LKTQIERLRLDYqheieslqSKQDSErsahakeMETMQAKLMKIIKEKEDSleavkarldsaeDQHLVEMEDTLN-KLQE 736
Cdd:pfam10174 287 MKNKIDQLKQEL--------SKKESE-------LLALQTKLETLTNQNSDC------------KQHIEVLKESLTaKEQR 339
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 737 AEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDAlrkansegklELETLRQQLEGAEKQIKNLEternaesSK 816
Cdd:pfam10174 340 AAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAG----------EIRDLKDMLDVKERKINVLQ-------KK 402
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 817 ANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLkekfastsEEAVSAQTRMQDTVNKLHQKEEQfnVLSSELEK 896
Cdd:pfam10174 403 IENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTL--------EEALSEKERIIERLKEQREREDR--ERLEELES 472
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 897 LRENLTDMEAKF----KEKDDREDQLVKAKEKLENDIAEIMKmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANENAS 972
Cdd:pfam10174 473 LKKENKDLKEKVsalqPELTEKESSLIDLKEHASSLASSGLK----KDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEE 548
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 973 FLQKSIgEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSyNQCQDLKAKYEKASSETKTKH-EEILQNLQKMLA 1051
Cdd:pfam10174 549 AVRTNP-EINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVE-NEKNDKDKKIAELESLTLRQMkEQNKKVANIKHG 626
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1052 DTEDKLKAAQEanrdlMQDMEELKTQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLK 1131
Cdd:pfam10174 627 QQEMKKKGAQL-----LEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRK 701
|
810
....*....|
gi 568937393 1132 TVEELNKSKE 1141
Cdd:pfam10174 702 QLEEILEMKQ 711
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1022-1353 |
1.27e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1022 QDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKA-----AQTAEDAMQIMEQ 1096
Cdd:PRK02224 240 DEVLEEHEERREELETLEAEI-EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAeagldDADAEAVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1097 MTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVE--------------ELNKSKELLSVENQKMEEFKKEIETLKQ 1162
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEEraeelreeaaelesELEEAREAVEDRREEIEELEEEIEELRE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1163 AAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQ-KLEEERSVL--NNQLLEMKKSLPSNTLRESEFRKDADEEKaslqk 1239
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEaTLRTARERVeeAEALLEAGKCPECGQPVEGSPHVETIEED----- 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1240 sisltSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQ---LKENKRQLSSS---SGN 1313
Cdd:PRK02224 474 -----RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERretIEEKRERAEELrerAAE 548
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568937393 1314 TDAQAEE-DERAQESQQMIDFLNSVIVDLQRKNQDLKMKVE 1353
Cdd:PRK02224 549 LEAEAEEkREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
492-955 |
1.51e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 492 KLQRELEDTRVATVSEKSRIMELEKDLAlraqEVAELRRRLESskppgDVDMS---LSLLQEISALQEKLEAIHTDhQGE 568
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEMARELE----ELSARESDLEQ-----DYQAAsdhLNLVQTALRQQEKIERYQED-LEE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 569 MTS-LKEHFGAREEAfQKEIKALHTATEKLSKENESLRSKLdhankensdvialwkskletaiASHQQAMEELkvsfskg 647
Cdd:COG3096 359 LTErLEEQEEVVEEA-AEQLAEAEARLEAAEEEVDSLKSQL----------------------ADYQQALDVQ------- 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 648 igtdsaefaelktqiERLRLDYQheiESLQSKQDSERSAHAKEMETMQAklmkiikekEDSLEAVKARLDSAeDQHLVEM 727
Cdd:COG3096 409 ---------------QTRAIQYQ---QAVQALEKARALCGLPDLTPENA---------EDYLAAFRAKEQQA-TEEVLEL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 728 EDTLNKLQEAEI---KVKELEVLQAKYTEQSEVIGNFTSQLSAVKEklLDLDALRKANSEGKL-ELETLRQQLEGAEKQI 803
Cdd:COG3096 461 EQKLSVADAARRqfeKAYELVCKIAGEVERSQAWQTARELLRRYRS--QQALAQRLQQLRAQLaELEQRLRQQQNAERLL 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 804 KNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEA---VSAQTRMQDTVNKL 880
Cdd:COG3096 539 EEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApawLAAQDALERLREQS 618
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937393 881 HQKEEQFNVLSSELEKLRENLTDMEAKfkekddrEDQLVKAKEKLENDIAEIMKMSGDNSSQLtkmndeLRLKER 955
Cdd:COG3096 619 GEALADSQEVTAAMQQLLEREREATVE-------RDELAARKQALESQIERLSQPGGAEDPRL------LALAER 680
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-605 |
1.51e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 335 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALARDGHDQhVLELEAKMDQLRT 414
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 415 MVEAADREKVELLNQLEEEKRKVEDLQFRVEEesitkgdleqkspisedpenTQTKLEHA-RTKELEQSLLFEKtkadKL 493
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDE--------------------LQDRLEAAeDLARLELRALLEE----RF 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 494 QRELEDTRVATVSEK--SRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSL--LQEISALQEKLEAIH-TDHQGE 568
Cdd:COG4913 756 AAALGDAVERELRENleERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLesLPEYLALLDRLEEDGlPEYEER 835
|
250 260 270
....*....|....*....|....*....|....*....
gi 568937393 569 MTSLKEHFGARE-EAFQKEIK-ALHTATEKLSKENESLR 605
Cdd:COG4913 836 FKELLNENSIEFvADLLSKLRrAIREIKERIDPLNDSLK 874
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
589-1296 |
1.56e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.05 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 589 ALHTATEKLSKENESLRSKldHANKENSDVIalwkSKLETAIASHQQAMEELKV-SFSKGIGTDSAEFAELKTQIerlrl 667
Cdd:TIGR01612 1048 AIHTSIYNIIDEIEKEIGK--NIELLNKEIL----EEAEINITNFNEIKEKLKHyNFDDFGKEENIKYADEINKI----- 1116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 668 dyQHEIESLQSKQDSersaHAKEMEtmqaklmKIIKEKEDSLEAVKARLDSAEDqhlveMEDTLNKLQEAEIKVKELEVL 747
Cdd:TIGR01612 1117 --KDDIKNLDQKIDH----HIKALE-------EIKKKSENYIDEIKAQINDLED-----VADKAISNDDPEEIEKKIENI 1178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 748 QAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRK--------ANSEGKLELETLRQQLEGAEKQIKNLEternAESSKANS 819
Cdd:TIGR01612 1179 VTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEvkginlsyGKNLGKLFLEKIDEEKKKSEHMIKAME----AYIEDLDE 1254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 820 ITKELQEKELVLTGLQDslnqvnqvketLEKELQTLkekfastseeavsaqtrmqdtvNKLHQKEEQFNVLSSELEKLRE 899
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMD-----------IKAEMETF----------------------NISHDDDKDHHIISKKHDENIS 1301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 900 NLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGD---------NSSQLTKMN------DELRLKERSVEELQLKL 964
Cdd:TIGR01612 1302 DIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDinlylneiaNIYNILKLNkikkiiDEVKEYTKEIEENNKNI 1381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 965 TKANENASFLQKSIGE-VTLKAEQSQQQAA--RKHEEEKKELEEKLLELEKKMETSYNqcqdlkaKYEKASSETKTKHEE 1041
Cdd:TIGR01612 1382 KDELDKSEKLIKKIKDdINLEECKSKIESTldDKDIDECIKKIKELKNHILSEESNID-------TYFKNADENNENVLL 1454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1042 ILQNLQKMLADTEDKLKAAQE-ANRDLMQDMEELKTQADKAKAAQTAEDA--------MQIMEQMTKEKTETLasledTK 1112
Cdd:TIGR01612 1455 LFKNIEMADNKSQHILKIKKDnATNDHDFNINELKEHIDKSKGCKDEADKnakaieknKELFEQYKKDVTELL-----NK 1529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1113 QTNARLQNELDTLKENNLKTVEELNKSKELLSVE----NQKMEEFKKEIETLKQAAAQKSQ--------QLSALQEEN-- 1178
Cdd:TIGR01612 1530 YSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEaeksEQKIKEIKKEKFRIEDDAAKNDKsnkaaidiQLSLENFENkf 1609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1179 VKLAEELGRTRDEVTSHQKLEEERSVL--NNQLLEMKKSLPS-NTLResEFRKDADEEKaslqKSISLTSALLTEKDAEL 1255
Cdd:TIGR01612 1610 LKISDIKKKINDCLKETESIEKKISSFsiDSQDTELKENGDNlNSLQ--EFLESLKDQK----KNIEDKKKELDELDSEI 1683
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 568937393 1256 EKLRN---------EVTVLRGENATAKSLHsvvQTLESDKVKLELKVKNL 1296
Cdd:TIGR01612 1684 EKIEIdvdqhkknyEIGIIEKIKEIAIANK---EEIESIKELIEPTIENL 1730
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
354-812 |
1.58e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 354 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHvlELEAKMDQLRTMVEAADREKVELLNQLEEE 433
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--PLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 434 KRKVEDLQFRVEEESITKGDLEQKspISEDPENTQTKLEHARTK--ELEQSLLFEKTKADKLQRELEDTRVAtvseksri 511
Cdd:COG4717 159 RELEEELEELEAELAELQEELEEL--LEQLSLATEEELQDLAEEleELQQRLAELEEELEEAQEELEELEEE-------- 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 512 MELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALH 591
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 592 TATEKLSKENESLRSKLDHANKENSDVIALWKSKLETaIASHQQAMEELKvsfskgigtdsaefaelKTQIERLRLDYQH 671
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDR-IEELQELLREAE-----------------ELEEELQLEELEQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 672 EIESLQSKqdsersAHAKEMETMQAKLMKiiKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKvKELEVLQAKY 751
Cdd:COG4717 371 EIAALLAE------AGVEDEEELRAALEQ--AEEYQELKEELEELEEQLEELLGELEELLEALDEEELE-EELEELEEEL 441
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568937393 752 TEQSEVIGNFTSQLSAVKEKLLDLdalrkansEGKLELETLRQQLEGAEKQIKNLETERNA 812
Cdd:COG4717 442 EELEEELEELREELAELEAELEQL--------EEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
435-1326 |
2.26e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.02 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 435 RKVEDLQFRVEEESITKGDLEQKSPISEDPENTQTKLEHartkelEQSLLFEKTKAD-KLQRELEDTRVATVSEKSRIME 513
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE------EKNALQEQLQAEtELCAEAEEMRARLAARKQELEE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 514 LEKDLALRAQEVAELRRRLESSKPpgdvdmslSLLQEISALQEKLEAIHTDHQgEMTSLKEHFGAREEAFQKEIKALHTA 593
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKK--------KMQQHIQDLEEQLDEEEAARQ-KLQLEKVTTEAKIKKLEEDILLLEDQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 594 TEKLSKENESLRSKL----DHANKENSDVIALWKSKLEtaiasHQQAMEELKVSFSKGIGTdSAEFAELKTQIERLRLDY 669
Cdd:pfam01576 147 NSKLSKERKLLEERIseftSNLAEEEEKAKSLSKLKNK-----HEAMISDLEERLKKEEKG-RQELEKAKRKLEGESTDL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 670 QHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKArldsaedqhLVEMEDTLNKLQEaeikvkELEVLQA 749
Cdd:pfam01576 221 QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKK---------IRELEAQISELQE------DLESERA 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 750 KYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGA-EKQIKNLETERNAESSKANSITKELQEKe 828
Cdd:pfam01576 286 ARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKAlEEETRSHEAQLQEMRQKHTQALEELTEQ- 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 829 lvltglqdsLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQ---FNVLSSELEKLRENLTDME 905
Cdd:pfam01576 365 ---------LEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQlqeLQARLSESERQRAELAEKL 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 906 AKFKEKDDREDQLVKAKE----KLENDIAEImkmsgdnSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEv 981
Cdd:pfam01576 436 SKLQSELESVSSLLNEAEgkniKLSKDVSSL-------ESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE- 507
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 982 tlkaEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKM------LADTED 1055
Cdd:pfam01576 508 ----EEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLektknrLQQELD 583
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1056 KLKAAQEANRDLMQDMEELKTQAD------KAKAAQTAEDAMQIMEQ----------MTKEKTETLASLEDTKQTNARLQ 1119
Cdd:pfam01576 584 DLLVDLDHQRQLVSNLEKKQKKFDqmlaeeKAISARYAEERDRAEAEareketralsLARALEEALEAKEELERTNKQLR 663
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1120 NELDTL---KENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA-LQEENVKLAEELgRTRDEvtsh 1195
Cdd:pfam01576 664 AEMEDLvssKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVnMQALKAQFERDL-QARDE---- 738
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1196 qKLEEERSVLNNQLLEMKKSLPSNTLRESEF---RKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGE--NA 1270
Cdd:pfam01576 739 -QGEEKRRQLVKQVRELEAELEDERKQRAQAvaaKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQREleEA 817
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*..
gi 568937393 1271 TAKSLHSVVQTLESDKvklelKVKNLELQLKENKRQLSSSS-GNTDAQAEEDERAQE 1326
Cdd:pfam01576 818 RASRDEILAQSKESEK-----KLKNLEAELLQLQEDLAASErARRQAQQERDELADE 869
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
779-1329 |
2.59e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 2.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 779 RKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTglqdslnqvnQVKETLEKELQTLKEk 858
Cdd:TIGR00618 165 KKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYH----------ERKQVLEKELKHLRE- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 859 fastseeavsAQTRMQDTVNKLHQKEEQFNvlssELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLEND-----IAEIM 933
Cdd:TIGR00618 234 ----------ALQQTQQSHAYLTQKREAQE----EQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaapLAAHI 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 934 KMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSigevtlkaEQSQQQAARKHEEekkeleekllelekk 1013
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--------RRLLQTLHSQEIH--------------- 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1014 metsyNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAaqeanrdLMQDMEELKTQADKAKAAQTAEDAMQI 1093
Cdd:TIGR00618 357 -----IRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQS-------LCKELDILQREQATIDTRTSAFRDLQG 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1094 meQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETlKQAAAQKSQQLSA 1173
Cdd:TIGR00618 425 --QLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRK-KAVVLARLLELQE 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1174 LQEENVKLAEELGRTR---DEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALLTE 1250
Cdd:TIGR00618 502 EPCPLCGSCIHPNPARqdiDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNR 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1251 KDAELEKLRNEVTVLRGE-NATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQ 1329
Cdd:TIGR00618 582 SKEDIPNLQNITVRLQDLtEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR 661
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1019-1382 |
2.71e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1019 NQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRdlmqdMEELKTQ-ADKAKAAQTAEDAMQIMEQM 1097
Cdd:COG5022 831 KLRETEEVEFSLKAEVLIQKFGRSLK-AKKRFSLLKKETIYLQSAQR-----VELAERQlQELKIDVKSISSLKLVNLEL 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1098 TKEKTETLASLEDTKQTNARLQNELDT-LKENNLKTVEELNKSKELLSVEN-QKMEEFKKEIEtlkqaaaQKSQQLSALQ 1175
Cdd:COG5022 905 ESEIIELKKSLSSDLIENLEFKTELIArLKKLLNNIDLEEGPSIEYVKLPElNKLHEVESKLK-------ETSEEYEDLL 977
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1176 EENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLR------ESEFRKDADEEKASLQKSISLTSALLt 1249
Cdd:COG5022 978 KKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEvaelqsASKIISSESTELSILKPLQKLKGLLL- 1056
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1250 ekdAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKL-ELKVKNLELqlkeNKRQLSSSSGNTDAQAEEDERAQESQ 1328
Cdd:COG5022 1057 ---LENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLkTINVKDLEV----TNRNLVKPANVLQFIVAQMIKLNLLQ 1129
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 568937393 1329 QMIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1382
Cdd:COG5022 1130 EISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLY 1183
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
743-1305 |
3.71e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 3.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 743 ELEVLQAKYTEQSEVIGNFTSQLSavkekllDLDALRKANSEGKLELETLRQQLEGAE-------KQIKNLETERNAESS 815
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEIS-------NIDYLEEKLKSSNLELENIKKQIADDEkshsitlKEIERLSIEYNNAMD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 816 KANSITKELQEkelvLTGLQDSLNQVNQVKETLEKELQTLKEKFAS-----------TSEEAVSAQTRMQDTVNKLHQKE 884
Cdd:PRK01156 233 DYNNLKSALNE----LSSLEDMKNRYESEIKTAESDLSMELEKNNYykeleerhmkiINDPVYKNRNYINDYFKYKNDIE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 885 EQFNVLS---SELEKLREN---LTDMEA---KFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKER 955
Cdd:PRK01156 309 NKKQILSnidAEINKYHAIikkLSVLQKdynDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIER 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 956 SVEELQLKLTKANENASFLQKSIGEVTLKAEQ-SQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSE 1034
Cdd:PRK01156 389 MSAFISEILKIQEIDPDAIKKELNEINVKLQDiSSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSN 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1035 TKTKH-EEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELktQADKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQ 1113
Cdd:PRK01156 469 HIINHyNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL--ESEEINKSINEYNKIESARADLEDIKIKINELKDKHD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1114 TNARLQNELDTLKENNL--KTVEELNKSKELLSVenqkmeefkkEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDE 1191
Cdd:PRK01156 547 KYEEIKNRYKSLKLEDLdsKRTSWLNALAVISLI----------DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1192 VTSH-QKLEEERSVLNNQ--LLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEvtvLRGE 1268
Cdd:PRK01156 617 IDKSiREIENEANNLNNKynEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKA---LDDA 693
|
570 580 590
....*....|....*....|....*....|....*..
gi 568937393 1269 NATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKR 1305
Cdd:PRK01156 694 KANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
913-1127 |
4.12e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 913 DREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLK-AEQSQQQ 991
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 992 AARKHEEEKKELEEKLLELEKKMETSYNQCQDLKA----KYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDL 1067
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1068 MQDMEELKTQADKAKAAQTaedamQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKE 1127
Cdd:COG4942 180 LAELEEERAALEALKAERQ-----KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
865-1357 |
4.37e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 48.20 E-value: 4.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 865 EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEK----LRENLTDMEAKFKEKDDRedqlVKAKEKLENDIAEIMKMSGDNS 940
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEKkasaLKRQLDRESDRNQELQKR----IRLLEKREAEAEEALREQAELN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 941 SQLTKMNDELRLKERsveELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKheeekkeleekllelEKKMETSYNQ 1020
Cdd:pfam05557 79 RLKKKYLEALNKKLN---EKESQLADAREVISCLKNELSELRRQIQRAELELQST---------------NSELEELQER 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1021 CQDLKAKYEKASsetktKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQadKAKAAQTAEdamqiMEQMTKE 1100
Cdd:pfam05557 141 LDLLKAKASEAE-----QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNS--KSELARIPE-----LEKELER 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1101 KTETLASLEDTKQTNARLQNELDTLKENnLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQK-------SQQLSA 1173
Cdd:pfam05557 209 LREHNKHLNENIENKLLLKEEVEDLKRK-LEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlSRRIEQ 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1174 LQEENVKLAEELG----RTRDEVTSHQKLEEERSVLNNQLLEMKKSLPsntlRESEFRKDADEEKASLQKSISLTSALLT 1249
Cdd:pfam05557 288 LQQREIVLKEENSsltsSARQLEKARRELEQELAQYLKKIEDLNKKLK----RHKALVRRLQRRVLLLTKERDGYRAILE 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1250 EKDAELeklrnevtvlrgeNATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDE----RAQ 1325
Cdd:pfam05557 364 SYDKEL-------------TMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERElqalRQQ 430
|
490 500 510
....*....|....*....|....*....|..
gi 568937393 1326 ESQQMIDFLNSVIVDLQRKNQDLKMKVEMMSE 1357
Cdd:pfam05557 431 ESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
925-1320 |
5.20e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 5.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 925 LENDIAEIMKMSGdnsSQLTKMNDELRlkerSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELE 1004
Cdd:TIGR02169 140 LQGDVTDFISMSP---VERRKIIDEIA----GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1005 ekllelekkmetsYNQCQDLKAKYE-KASSETKTKHEEILQNLQKMLADTE---DKLKAAQEANRDLMQDMEELKTQADK 1080
Cdd:TIGR02169 213 -------------YQALLKEKREYEgYELLKEKEALERQKEAIERQLASLEeelEKLTEEISELEKRLEEIEQLLEELNK 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1081 AKAAQTAEDAMQIMEQMTkektETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL 1160
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIG----ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1161 KQAAAQKSQQLSAL----QEENVKLAEELGRTRDEVTSHQKLEEERsvlnNQLLEMKKSLPSNTLRESEFRKDADEEKAS 1236
Cdd:TIGR02169 356 TEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLKREI----NELKRELDRLQEELQRLSEELADLNAAIAG 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1237 LQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTlESDKVKLELKVKNLELQLKENKRQLSSSSGNTDA 1316
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
....
gi 568937393 1317 QAEE 1320
Cdd:TIGR02169 511 AVEE 514
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
690-862 |
7.67e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 690 EMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHlvemEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNftsqlsaVK 769
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTEL----EDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-------NK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 770 EklldLDALRKansegklELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLE 849
Cdd:COG1579 90 E----YEALQK-------EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
170
....*....|...
gi 568937393 850 KELQTLKEKFAST 862
Cdd:COG1579 159 EELEAEREELAAK 171
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
410-1152 |
8.11e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 8.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 410 DQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDpentQTKLEHARTKELEQSLLFEKTK 489
Cdd:TIGR00606 419 SKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR----ILELDQELRKAERELSKAEKNS 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 490 AdklqreLEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdMSLSLLQEISALQEKLEAIHTDHQGEM 569
Cdd:TIGR00606 495 L------TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRT------QMEMLTKDKMDKDEQIRKIKSRHSDEL 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 570 TSLKEHFGAReeafqkeiKALHTATEKLSKENESLRSKLDHANKENSDVialwkSKLETAIASHQQAMEELKVSFSKGIg 649
Cdd:TIGR00606 563 TSLLGYFPNK--------KQLEDWLHSKSKEINQTRDRLAKLNKELASL-----EQNKNHINNELESKEEQLSSYEDKL- 628
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 650 TDSAEFAELKTQIERLRLDYqheieslqsKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMED 729
Cdd:TIGR00606 629 FDVCGSQDEESDLERLKEEI---------EKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISD 699
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 730 TLNKLQEAEIKVKELE-VLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLET 808
Cdd:TIGR00606 700 LQSKLRLAPDKLKSTEsELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMP 779
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 809 ERNAesskansiTKELQEKELVLTGLQDSLNQVNQVKETLEKELQtlkekfastseeAVSAQTRMQDTVNKLHQKEEQFN 888
Cdd:TIGR00606 780 EEES--------AKVCLTDVTIMERFQMELKDVERKIAQQAAKLQ------------GSDLDRTVQQVNQEKQEKQHELD 839
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 889 VLSSELEKLRenltdmeakfKEKDDREDQLVKAKEKLENDIAEIMKMsGDNSSQLTKMNDELRLKERSVEELQLKLTKAN 968
Cdd:TIGR00606 840 TVVSKIELNR----------KLIQDQQEQIQHLKSKTNELKSEKLQI-GTNLQRRQQFEEQLVELSTEVQSLIREIKDAK 908
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 969 ENASFLQKSIGevtlKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQK 1048
Cdd:TIGR00606 909 EQDSPLETFLE----KDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNA 984
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1049 MLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTaedaMQIMEQMTKEKTETLAS---------LEDTKQTNARLQ 1119
Cdd:TIGR00606 985 QLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT----LRKRENELKEVEEELKQhlkemgqmqVLQMKQEHQKLE 1060
|
730 740 750
....*....|....*....|....*....|...
gi 568937393 1120 NELDTLKENNLKTVEELNKSKELLSVENQKMEE 1152
Cdd:TIGR00606 1061 ENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| COG4487 |
COG4487 |
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown]; |
1022-1171 |
8.62e-05 |
|
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
Pssm-ID: 443580 [Multi-domain] Cd Length: 425 Bit Score: 46.86 E-value: 8.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1022 QDLKAKYEKASSETKTKHEEILQNLQKMLADTEDK--LKAAQEANRDLMQDMEELKTQADKAKAAQTAEdamqiMEQMTK 1099
Cdd:COG4487 50 ELAEAKAKAQLQEQVAEKDAEIAELRARLEAEERKkaLAVAEEKEKELAALQEALAEKDAKLAELQAKE-----LELLKK 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568937393 1100 EKTETLASLEDTKQTNARLQNELDTLKEN-NLKTVEELNKSKELLSVENQK-MEEFKKEIETLKQAAAQKSQQL 1171
Cdd:COG4487 125 ERELEDAKREAELTVEKERDEELDELKEKlKKEEEEKQLAEKSLKVAEYEKqLKDMQEQIEELKRKKEQGSTQL 198
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1384-1401 |
1.26e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 40.14 E-value: 1.26e-04
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1110-1386 |
1.27e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.99 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1110 DTKQTNARLQNELDTLKENNLKTVEELNKSKELLSvenqkmEEFKKEIETLKQAAAQKSQQLSALQEENVKLAE-ELGRT 1188
Cdd:COG5022 814 SYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLI------QKFGRSLKAKKRFSLLKKETIYLQSAQRVELAErQLQEL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1189 RDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSALLTE--KDAELEKLRNEVTVLR 1266
Cdd:COG5022 888 KIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEyvKLPELNKLHEVESKLK 967
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1267 GENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAQESQQMIDFLNSVIVDLQRKNQ 1346
Cdd:COG5022 968 ETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKP 1047
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568937393 1347 DLKMKVEMMSEA-ALNGNGEDL-----NSYDSDDQEKQSKKKPRLF 1386
Cdd:COG5022 1048 LQKLKGLLLLENnQLQARYKALklrreNSLLDDKQLYQLESTENLL 1093
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
658-1216 |
1.36e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 658 LKTQIERLRLDYQHEIESLQSKQDSERsahaKEMETMQAKLMKIIKEKEDSleAVKARLDSAEdQHLVEMEDTLNKLQEA 737
Cdd:pfam10174 135 LRKTLEEMELRIETQKQTLGARDESIK----KLLEMLQSKGLPKKSGEEDW--ERTRRIAEAE-MQLGHLEVLLDQKEKE 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 738 EIKVKEleVLQAKYTEQSEviGNFTSQLSAVKE-KLLDLDALRKANSEGKLELETLRQQL----EGAEKQIKNLETERNA 812
Cdd:pfam10174 208 NIHLRE--ELHRRNQLQPD--PAKTKALQTVIEmKDTKISSLERNIRDLEDEVQMLKTNGllhtEDREEEIKQMEVYKSH 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 813 ES---SKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNV 889
Cdd:pfam10174 284 SKfmkNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 890 LSSELEKLREN-------LTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKM--------------SGDNSSQLTKMND 948
Cdd:pfam10174 364 KTKQLQDLTEEkstlageIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQlaglkervkslqtdSSNTDTALTTLEE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 949 ELRLKERSVEELQLKltKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKY 1028
Cdd:pfam10174 444 ALSEKERIIERLKEQ--REREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKS 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1029 EKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKT---ET 1104
Cdd:pfam10174 522 LEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAeVERLLGILREVENEKNdkdKK 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1105 LASLEDTKQTNARLQNeldtLKENNLKTVEELNKSKELlsvenQKMEEFKKEIETLKQAAAQksQQLSALQEENVKLAEE 1184
Cdd:pfam10174 602 IAELESLTLRQMKEQN----KKVANIKHGQQEMKKKGA-----QLLEEARRREDNLADNSQQ--LQLEELMGALEKTRQE 670
|
570 580 590
....*....|....*....|....*....|...
gi 568937393 1185 LGRTRDEVTS-HQKLEEERSVLNNQLLEMKKSL 1216
Cdd:pfam10174 671 LDATKARLSStQQSLAEKDGHLTNLRAERRKQL 703
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1018-1194 |
1.71e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1018 YNQCQDLKAKYEKASSETKTKHEEIlQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADK------AKAAQTAEDAM 1091
Cdd:COG3883 43 QAELEELNEEYNELQAELEALQAEI-DKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYldvllgSESFSDFLDRL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1092 QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLsveNQKMEEFKKEIETLKQAAAQKSQQL 1171
Cdd:COG3883 122 SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQL 198
|
170 180
....*....|....*....|...
gi 568937393 1172 SALQEENVKLAEELGRTRDEVTS 1194
Cdd:COG3883 199 AELEAELAAAEAAAAAAAAAAAA 221
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
353-951 |
1.77e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 353 QEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGH--DQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHtlQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 431 EEEKRKVEDLQFRVEEESITKGDLEQKSPISEDpENTQTKLEHARTKELEQSLLFEKTK-ADKLQRELEDTRVATVSEKS 509
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITC-TAQCEKLEKIHLQESAQSLKEREQQlQTKEQIHLQETRKKAVVLAR 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 510 RIMELEKDLALRAQEVAELRRRLESSKPPGDVDMSLSLLQEISALQEKLEaiHTDHQGemTSLKEHFGAREEAFQKEIKA 589
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE--DVYHQL--TSERKQRASLKEQMQEIQQS 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 590 LHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQameelkvsfskgigtdsaefaELKTQIErlrLDY 669
Cdd:TIGR00618 572 FSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL---------------------LRKLQPE---QDL 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 670 QHEIESLQSKQDSErsahAKEMETMQAKLMKIIKEKEdsleavkarldsaEDQHLVEMEDTLNKLQEAEIKVKELEVLQA 749
Cdd:TIGR00618 628 QDVRLHLQQCSQEL----ALKLTALHALQLTLTQERV-------------REHALSIRVLPKELLASRQLALQKMQSEKE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 750 KYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLEL-ETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKE 828
Cdd:TIGR00618 691 QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLgSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEV 770
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 829 LVLTGLQDSLNQVNQVKETLEKELQT----LKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDM 904
Cdd:TIGR00618 771 TAALQTGAELSHLAAEIQFFNRLREEdthlLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 568937393 905 EAKFKEKDDREDQLVKAKEKLendIAEIMKMSGDNSSQLTKMNDELR 951
Cdd:TIGR00618 851 LLKYEECSKQLAQLTQEQAKI---IQLSDKLNGINQIKIQFDGDALI 894
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
846-1276 |
1.96e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 846 ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 925
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 926 ENDIaeimkmsgdnssQLTKMNDELRLKERSVEELQLKLTKANEnasfLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 1005
Cdd:COG4717 129 PLYQ------------ELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1006 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKML-ADTEDKLKAAQEANRD-------LMQDMEELKTQ 1077
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEaAALEERLKEARLLLLIaaallalLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1078 ADKAKAAQTAEDAMQIMEQMT-KEKTETLASLEDTKQTNAR-------LQNELDTLKENNLKTVEELNKSKELLSVENQK 1149
Cdd:COG4717 273 LTIAGVLFLVLGLLALLFLLLaREKASLGKEAEELQALPALeeleeeeLEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1150 MEEFKKEIETLKQAAAQKSQQlSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLpsNTLRESEFRKD 1229
Cdd:COG4717 353 LREAEELEEELQLEELEQEIA-ALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGEL--EELLEALDEEE 429
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 568937393 1230 ADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLH 1276
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQ 476
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
846-964 |
2.07e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.00 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 846 ETLEKELQTLKEKfaSTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR----EDQLVKA 921
Cdd:COG2433 376 LSIEEALEELIEK--ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierlERELSEA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 568937393 922 KEKLENDI---AEIMKMSGDNsSQLTKmndELRLKERSVEELQLKL 964
Cdd:COG2433 454 RSEERREIrkdREISRLDREI-ERLER---ELEEERERIEELKRKL 495
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1043-1267 |
2.10e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1043 LQNLQKMLADTEDKLKAAQEAnRDLMQDMEELKTQADKA---KAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQ 1119
Cdd:COG4913 237 LERAHEALEDAREQIELLEPI-RELAERYAAARERLAELeylRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1120 NELDTLKEnnlkTVEELnkSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEenvkLAEELGrtrdevtshQKLE 1199
Cdd:COG4913 316 ARLDALRE----ELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEA----LLAALG---------LPLP 376
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937393 1200 EERSVLNNQLLEMKkslpsntlresEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRG 1267
Cdd:COG4913 377 ASAEEFAALRAEAA-----------ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
400-995 |
2.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 400 QHVLELEAKMDQLRTMVEAADrEKVELLNQLEEEKRKVEDLQfrveeesitkgdleqksPISEDPENTQTKLEHARTKEL 479
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHFD-DLERAHEALEDAREQIELLE-----------------PIRELAERYAAARERLAELEY 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 480 EQSLL---FEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSkppgDVDMSLSLLQEISALQE 556
Cdd:COG4913 277 LRAALrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN----GGDRLEQLEREIERLER 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 557 KLEAIhtdhqgemtslkehfGAREEAFQKEIKALHTATEKLSKENESLRSKLDHAnkensdvialwKSKLETAIASHQQA 636
Cdd:COG4913 353 ELEER---------------ERRRARLEALLAALGLPLPASAEEFAALRAEAAAL-----------LEALEEELEALEEA 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 637 MEELKvsfskgigtdsAEFAELKTQIERLrldyQHEIESLQSKqdseRSAHAKEMETMQAKLMKIIKEKEDSL----EAV 712
Cdd:COG4913 407 LAEAE-----------AALRDLRRELREL----EAEIASLERR----KSNIPARLLALRDALAEALGLDEAELpfvgELI 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 713 KARLDSA-------------------EDQHL------VEMEDTLNKLQEAEIKVKELEVLQAKYTEQS---EVIGNFTSQ 764
Cdd:COG4913 468 EVRPEEErwrgaiervlggfaltllvPPEHYaaalrwVNRLHLRGRLVYERVRTGLPDPERPRLDPDSlagKLDFKPHPF 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 765 LSAVKEKLLDLDALRKANSEGKLELETLRQQLEG--------------------------AEKQIKNLETERNAesskan 818
Cdd:COG4913 548 RAWLEAELGRRFDYVCVDSPEELRRHPRAITRAGqvkgngtrhekddrrrirsryvlgfdNRAKLAALEAELAE------ 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 819 sitkelqekelvltgLQDSLNQVNQVKETLEKELQTLKEKFA--STSEEAVSAQTRMQDTVNKLHQKEEQFNVL---SSE 893
Cdd:COG4913 622 ---------------LEEELAEAEERLEALEAELDALQERREalQRLAEYSWDEIDVASAEREIAELEAELERLdasSDD 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 894 LEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASF 973
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE 766
|
650 660
....*....|....*....|..
gi 568937393 974 LQKSIGEVTLKAEQSQQQAARK 995
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEE 788
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
653-1100 |
2.60e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 653 AEFAELKTQIERLRldyqHEIESLQSKQDS-ERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEdQHLVEMEDTL 731
Cdd:COG4717 88 EEYAELQEELEELE----EELEELEAELEElREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE-ERLEELRELE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 732 NKLQEAEikvKELEVLQAKYTEQSEVIGNftSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERN 811
Cdd:COG4717 163 EELEELE---AELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 812 AEsskanSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQfnvls 891
Cdd:COG4717 238 AA-----ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL----- 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 892 sELEKLRENLTDMEAKfkekddredQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENA 971
Cdd:COG4717 308 -QALPALEELEEEELE---------ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 972 SFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEiLQNLQKMLA 1051
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE-LEELREELA 456
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 568937393 1052 DTEDKLKAAQEANR--DLMQDMEELKTQ-ADKAKAAQTAEDAMQIMEQMTKE 1100
Cdd:COG4717 457 ELEAELEQLEEDGElaELLQELEELKAElRELAEEWAALKLALELLEEAREE 508
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1033-1276 |
2.75e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 44.75 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1033 SETKTKHEEILQNLQKMLAD-TEDKLKAAQEANRDLMQDMEELKTQADkakaaQTAEDAMQIMEQMTKEKTEtLASLEdt 1111
Cdd:pfam09787 10 ADYKQKAARILQSKEKLIASlKEGSGVEGLDSSTALTLELEELRQERD-----LLREEIQKLRGQIQQLRTE-LQELE-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1112 kqtnARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKKEietlkqaaaqksqqLSALQEENVKLAEELGRTRDE 1191
Cdd:pfam09787 82 ----AQQQEEAESSRE-------QLQELEEQLATERSARREAEAE--------------LERLQEELRYLEEELRRSKAT 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1192 -VTSHQKLEEERSVLNNQLleMKKSLPSNTLRESEFRKDADEEkASLQKSISLtSALLTEKDA---ELEKLRNEVTVLRG 1267
Cdd:pfam09787 137 lQSRIKDREAEIEKLRNQL--TSKSQSSSSQSELENRLHQLTE-TLIQKQTML-EALSTEKNSlvlQLERMEQQIKELQG 212
|
....*....
gi 568937393 1268 ENATAKSLH 1276
Cdd:pfam09787 213 EGSNGTSIN 221
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1007-1323 |
3.20e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1007 LLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT 1086
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1087 AEDAMQIMEQmtKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQ 1166
Cdd:pfam02463 272 KENKEEEKEK--KLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEI 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1167 KSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEFRKDADEEKASLQKSISLTSA 1246
Cdd:pfam02463 350 KREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEEL 429
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568937393 1247 LLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDER 1323
Cdd:pfam02463 430 EILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
794-1227 |
4.00e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 794 QQLEGAEKQIKNLETErNAESSKANSITKELQEKELVLT-GLQDSLNQVNQVKETLEKELQTLKEKfaSTSEEAVSAQTR 872
Cdd:COG5022 875 QRVELAERQLQELKID-VKSISSLKLVNLELESEIIELKkSLSSDLIENLEFKTELIARLKKLLNN--IDLEEGPSIEYV 951
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 873 MQDTVNKLHQKEeqfnvlsSELEKLRENLTDMeakFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSqLTKMNDELRL 952
Cdd:COG5022 952 KLPELNKLHEVE-------SKLKETSEEYEDL---LKKSTILVREGNKANSELKNFKKELAELSKQYGA-LQESTKQLKE 1020
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 953 KERSVEELQLKLTKANENASFL------QKSIGEVTLKAEQSQQQAarKHEEEKKELEEKLLELEKKMETSYNQCQDLKA 1026
Cdd:COG5022 1021 LPVEVAELQSASKIISSESTELsilkplQKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQLESTENLLKTINV 1098
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1027 KYEKASSETKTKHEEILQNLqkmladtedklkAAQEANRDLMQDMEELKTQadkakAAQTAEDAMQIME--QMTKEKTET 1104
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFI------------VAQMIKLNLLQEISKFLSQ-----LVNTLEPVFQKLSvlQLELDGLFW 1161
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1105 LASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETL-KQAAAQKSQQLSALQEENVKLAE 1183
Cdd:COG5022 1162 EANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWpRGDKLKKLISEGWVPTEYSTSLK 1241
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 568937393 1184 ELGRTRDEVTSHQKL--EEERSVLNNQLLEMKKSLPSNTLRESEFR 1227
Cdd:COG5022 1242 GFNNLNKKFDTPASMsnEKLLSLLNSIDNLLSSYKLEEEVLPATIN 1287
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1127-1382 |
4.64e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.56 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1127 ENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSA-LQEENVKLAEELGRTRDEVTSHQKLEEERSVL 1205
Cdd:COG5185 232 EEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKrLNENANNLIKQFENTKEKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1206 NNQLLEMKKSLPSNTL--RESEFRKDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTVLRGEnataKSLHSVVQTLE 1283
Cdd:COG5185 312 ESLEEQLAAAEAEQELeeSKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSS----EELDSFKDTIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1284 SDKVKLELKVKNLELQLKENKRQLSSSSGNTDAQAEEDERAqesqqmIDFLNSVIVDLQRKNQDL-KMKVEMMSEAALNG 1362
Cdd:COG5185 388 STKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQ------IEQATSSNEEVSKLLNELiSELNKVMREADEES 461
|
250 260
....*....|....*....|
gi 568937393 1363 NGEDLNSYDSDDQEKQSKKK 1382
Cdd:COG5185 462 QSRLEEAYDEINRSVRSKKE 481
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
404-883 |
4.80e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 404 ELEAKMDQLRTmveAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSPISEDPENTQTKLEHARTK-ELEQS 482
Cdd:COG4717 50 RLEKEADELFK---PQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKlEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 483 LLFEKTKADKLQRELEDtrvatvsEKSRIMELEKdlalRAQEVAELRRRLESskppgdvdmslsLLQEISALQEKLEAIH 562
Cdd:COG4717 127 LLPLYQELEALEAELAE-------LPERLEELEE----RLEELRELEEELEE------------LEAELAELQEELEELL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 563 TDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLD-------HANKENSDVIALWKSKLETAIASHQQ 635
Cdd:COG4717 184 EQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEqleneleAAALEERLKEARLLLLIAAALLALLG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 636 AMEELKVSFSK---------GIGTDSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKE 706
Cdd:COG4717 264 LGGSLLSLILTiagvlflvlGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELL 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 707 DSLEAVKARLDSAEDQH----LVEMEDTLNKLQeAEIKVKELEVLQAKYTEQSEVIgNFTSQLSAVKEKLLDLDALRKAN 782
Cdd:COG4717 344 DRIEELQELLREAEELEeelqLEELEQEIAALL-AEAGVEDEEELRAALEQAEEYQ-ELKEELEELEEQLEELLGELEEL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 783 SEgKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKElvltgLQDSLNQVNQVKETLEKELQTLKEKFASt 862
Cdd:COG4717 422 LE-ALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE-----EDGELAELLQELEELKAELRELAEEWAA- 494
|
490 500
....*....|....*....|.
gi 568937393 863 seeAVSAQTRMQDTVNKLHQK 883
Cdd:COG4717 495 ---LKLALELLEEAREEYREE 512
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
581-871 |
4.81e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.56 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 581 EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGIGTDSAE----FA 656
Cdd:COG5185 242 ESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEeqlaAA 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 657 ELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEdsLEAVKARLDSAEDQHLVEMEDTLNKLQE 736
Cdd:COG5185 322 EAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVE--LSKSSEELDSFKDTIESTKESLDEIPQN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 737 AEIKVKE-LEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESS 815
Cdd:COG5185 400 QRGYAQEiLATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSK 479
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 568937393 816 KANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQT 871
Cdd:COG5185 480 KEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGY 535
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-534 |
4.85e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 351 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARdghdQHVLELEAKMDQLRTMVEAADREKVELLNQL 430
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 431 EEEKRKVEDL---QFRVEEESITKGDLEQKSP------------ISEDPENTQTKLEHART--KELEQSLLFEKTKADKL 493
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFldavrrlqylkyLAPARREQAEELRADLAelAALRAELEAERAELEAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568937393 494 QRELEDTRVATVSEKSR----IMELEKDLALRAQEVAELRRRLES 534
Cdd:COG4942 180 LAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEE 224
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
684-929 |
4.89e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 44.63 E-value: 4.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 684 RSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTS 763
Cdd:pfam05667 231 LASRLTPEEYRKRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTTDTGLTKGSRFTHTEKLQFTN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 764 QLSAVKEKLL----DLDALRKANSEgklELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLN 839
Cdd:pfam05667 311 EAPAATSSPPtkveTEEELQQQREE---ELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 840 ------------QVNQVKetLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQ----KEEQFNVLSSELEKLRENLTD 903
Cdd:pfam05667 388 vkkktldllpdaEENIAK--LQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEaksnKEDESQRKLEEIKELREKIKE 465
|
250 260
....*....|....*....|....*.
gi 568937393 904 MEAKFKEKDDREDQLVKAKEKLENDI 929
Cdd:pfam05667 466 VAEEAKQKEELYKQLVAEYERLPKDV 491
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
576-979 |
6.05e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 6.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 576 FG--ARE---EAFQKEIKALHTATEKLSKENESLRSKLDHANKENSDVIALW-KSKLETAIASHQQAMEELkvsfskgig 649
Cdd:PRK04863 779 FGraAREkriEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAfEADPEAELRQLNRRRVEL--------- 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 650 tdSAEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDSLEAvkARLDSAEDQHLVEMED 729
Cdd:PRK04863 850 --ERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEA--KRFVQQHGNALAQLEP 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 730 TLNKLQEAEikvKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLE-----LETLRQQLEGAEKQIK 804
Cdd:PRK04863 926 IVSVLQSDP---EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAknsdlNEKLRQRLEQAEQERT 1002
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 805 NLETE-RNAESskansitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQtrmQDTVNK-LHQ 882
Cdd:PRK04863 1003 RAREQlRQAQA--------QLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARAR---RDELHArLSA 1071
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 883 KEEQFNVLSSELEKLRENLTDMEAKFK--EKD--DREDQLVKAKekleNDIAEIMKMSGDNSsqltkmnDELRLKERSVE 958
Cdd:PRK04863 1072 NRSRRNQLEKQLTFCEAEMDNLTKKLRklERDyhEMREQVVNAK----AGWCAVLRLVKDNG-------VERRLHRRELA 1140
|
410 420
....*....|....*....|.
gi 568937393 959 ELqlkltKANENASFLQKSIG 979
Cdd:PRK04863 1141 YL-----SADELRSMSDKALG 1156
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
461-688 |
6.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 461 SEDPENTQTKLE--HARTKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPP 538
Cdd:COG4942 19 ADAAAEAEAELEqlQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 539 -----GDVDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKLDHANK 613
Cdd:COG4942 99 leaqkEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568937393 614 ENSDVIALwKSKLETAIASHQQAMEELKVSFSKgigtDSAEFAELKTQIERLrldyQHEIESLQSKQDSERSAHA 688
Cdd:COG4942 179 LLAELEEE-RAALEALKAERQKLLARLEKELAE----LAAELAELQQEAEEL----EALIARLEAEAAAAAERTP 244
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
355-498 |
6.26e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 355 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568937393 421 REKVELLNQLEEEKRKVEDLQFRVEEESItkgdlEQKSPISEDPEntQTKLEhARTKELEQSLLFEKTKADKLQRELE 498
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARS-----EERREIRKDRE--ISRLD-REIERLERELEEERERIEELKRKLE 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
670-911 |
6.93e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 670 QHEIESLQSKQDSERSAhAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQhLVEMEDTLNKLQeaeikvKELEVLQA 749
Cdd:COG4942 26 EAELEQLQQEIAELEKE-LAALKKEEKALLKQLAALERRIAALARRIRALEQE-LAALEAELAELE------KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 750 KYTEQSEVIGNFtsqlsavkeklldLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEkel 829
Cdd:COG4942 98 ELEAQKEELAEL-------------LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE--- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 830 vLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFK 909
Cdd:COG4942 162 -LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
..
gi 568937393 910 EK 911
Cdd:COG4942 241 ER 242
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
863-1258 |
7.86e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 863 SEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDR-------------EDQLVKAKEKLENDI 929
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHlnlvqtalrqqekIERYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 930 AEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKsigevtlKAEQSQQ--QAARKHEEEKKELEEKL 1007
Cdd:PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT-------RAIQYQQavQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1008 LELEKKMETSYNQCQDLKAKYEKA------SSETKTKHEEILQNLQKMLADTEDklKAAQEANRDLMQDMEELKTQADKA 1081
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLeqklsvAQAAHSQFEQAYQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1082 KAAQTA-----------EDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKennlktvEELNKSKELLSVENQKM 1150
Cdd:PRK04863 516 QQLRMRlseleqrlrqqQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS-------ESVSEARERRMALRQQL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1151 EEFKKEIETLkqaaAQKSQQLSALQEENVKLAEELGrtrDEVTSHQKLEEERSvlnnQLLEMKKSLpsntlreSEFRKDA 1230
Cdd:PRK04863 589 EQLQARIQRL----AARAPAWLAAQDALARLREQSG---EEFEDSQDVTEYMQ----QLLEREREL-------TVERDEL 650
|
410 420
....*....|....*....|....*...
gi 568937393 1231 DEEKASLQKSISLTSALLTEKDAELEKL 1258
Cdd:PRK04863 651 AARKQALDEEIERLSQPGGSEDPRLNAL 678
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1081-1311 |
8.68e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 8.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1081 AKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKEnnlktveELNKSKELLSVENQKMEEFKKEIETL 1160
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER-------RIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1161 KQAAAQKSQQLSALQEENVKLAEELGRTRDE------VTSHQKLEEERSV-----LNNQLLEMKKSLPSNTLRESEFRKD 1229
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLqylkyLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1230 ADEEKASLQKSIsltsALLTEKDAELEKLRNEV-TVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLS 1308
Cdd:COG4942 169 LEAERAELEALL----AELEEERAALEALKAERqKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
...
gi 568937393 1309 SSS 1311
Cdd:COG4942 245 AAG 247
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
672-937 |
8.88e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 672 EIESLQSKQDsersaHAKEMETMQAKLMKIIKEKEDsleAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKY 751
Cdd:PHA02562 182 QIQTLDMKID-----HIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 752 TEQSEVIGNFTSQLSAvkeKLLDLDALRKANSEGKlELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEkelvL 831
Cdd:PHA02562 254 SAALNKLNTAAAKIKS---KIEQFQKVIKMYEKGG-VCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE----L 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 832 TGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQdtvnklhQKEEQFNVLSSELEKLRENLTDmeaKFKEK 911
Cdd:PHA02562 326 EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE-------ELQAEFVDNAEELAKLQDELDK---IVKTK 395
|
250 260
....*....|....*....|....*..
gi 568937393 912 DDredqlvKAKEKLENDIA-EIMKMSG 937
Cdd:PHA02562 396 SE------LVKEKYHRGIVtDLLKDSG 416
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
766-1090 |
9.17e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 766 SAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVK 845
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 846 ETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREdqLVKAKEKL 925
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE--AEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 926 ENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 1005
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1006 KLLELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQ 1085
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLV 348
|
....*
gi 568937393 1086 TAEDA 1090
Cdd:COG4372 349 GLLDN 353
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
493-739 |
9.20e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 493 LQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPPGDVDMslsLLQEISALQEKLEAIhtdhQGEMTSL 572
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---LLQQLSELESQLAEA----RAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 573 KehfgAREEAFQKEIKALHTATEKLSkeneslrskldhankeNSDVIAlwksKLETAIASHQQAMEELKVSFskgiGTDS 652
Cdd:COG3206 239 E----ARLAALRAQLGSGPDALPELL----------------QSPVIQ----QLRAQLAELEAELAELSARY----TPNH 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 653 AEFAELKTQIERLRLDYQHEIESLQSKQDSERSAHAKEMETMQAKL------MKIIKEKEDSLEAVKARLDSAEDQHlve 726
Cdd:COG3206 291 PDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLaqlearLAELPELEAELRRLEREVEVARELY--- 367
|
250
....*....|...
gi 568937393 727 mEDTLNKLQEAEI 739
Cdd:COG3206 368 -ESLLQRLEEARL 379
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
786-955 |
1.07e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 786 KLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKelvltgLQDSLNQvnqvketLEKELQTLKEKFastsEE 865
Cdd:COG0542 403 RMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAE------LRDELAE-------LEEELEALKARW----EA 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 866 AVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDredqlvkakeklENDIAEIM---------KMS 936
Cdd:COG0542 466 EKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVT------------EEDIAEVVsrwtgipvgKLL 533
|
170
....*....|....*....
gi 568937393 937 GDNSSQLTKMNDElrLKER 955
Cdd:COG0542 534 EGEREKLLNLEEE--LHER 550
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
952-1221 |
1.26e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 952 LKERSVEELQLKLTKAN-ENASFLQKSIGEVTLKAEQSQQQAARkheeekkeleeklleLEKKMETSYNQCQDLKAKYEK 1030
Cdd:PRK11281 48 LNKQKLLEAEDKLVQQDlEQTLALLDKIDRQKEETEQLKQQLAQ---------------APAKLRQAQAELEALKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1031 ASSETKTKHEeiLQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQTAedAMQIMEQMTKEKTETLASLED 1110
Cdd:PRK11281 113 ETRETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA--NSQRLQQIRNLLKGGKVGGKA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1111 TKQT-----NARL-----QNELD-TLKENNLKTVEELNKSKELLSVENQKMEEF----------KKEIETLKQAAAQKSQ 1169
Cdd:PRK11281 189 LRPSqrvllQAEQallnaQNDLQrKSLEGNTQLQDLLQKQRDYLTARIQRLEHQlqllqeainsKRLTLSEKTVQEAQSQ 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1170 QLSA-------LQEE---NVKLAEELGRTRDEVT------------------SHQKLEEERSVLNNQLL------EMKKS 1215
Cdd:PRK11281 269 DEAAriqanplVAQEleiNLQLSQRLLKATEKLNtltqqnlrvknwldrltqSERNIKEQISVLKGSLLlsrilyQQQQA 348
|
....*.
gi 568937393 1216 LPSNTL 1221
Cdd:PRK11281 349 LPSADL 354
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
546-854 |
1.41e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 42.60 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 546 SLLQEISALQEKLEAIHTDHQGEMTSLKEHFgareeafQKEIKALHTATEKLSKENESLRSKLDHANKENSDVialwKSK 625
Cdd:pfam00038 22 FLEQQNKLLETKISELRQKKGAEPSRLYSLY-------EKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDF----RQK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 626 LETAIAsHQQAMEelkvsfskgigtdsAEFAELKTQIERL---RLDYQHEIESLQSKQDSERSAHAKEMETMQAKLmkii 702
Cdd:pfam00038 91 YEDELN-LRTSAE--------------NDLVGLRKDLDEAtlaRVDLEAKIESLKEELAFLKKNHEEEVRELQAQV---- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 703 kekedSLEAVKARLDSAEDQHLVE-MEDTLNKLQE-AEIKVKELEVL-QAKYTEQSEVIGNFTSQLSAVKEKLLDldaLR 779
Cdd:pfam00038 152 -----SDTQVNVEMDAARKLDLTSaLAEIRAQYEEiAAKNREEAEEWyQSKLEELQQAAARNGDALRSAKEEITE---LR 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 780 KANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSItkeLQEKELVLTGLQDSLNQVNQ-------VKETLEKEL 852
Cdd:pfam00038 224 RTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQEL---ISELEAELQETRQEMARQLReyqellnVKLALDIEI 300
|
..
gi 568937393 853 QT 854
Cdd:pfam00038 301 AT 302
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
584-927 |
1.41e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.92 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 584 QKEIKALHTATEKLSKENESLRSKLDHANKEnsdvIALWKSKLETAIASHQQAMEELKVSFSKGIG-TDSAEFAELKTQI 662
Cdd:pfam06160 106 LEELDELLESEEKNREEVEELKDKYRELRKT----LLANRFSYGPAIDELEKQLAEIEEEFSQFEElTESGDYLEAREVL 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 663 ERLRldyqHEIESLQSK-----------------QDSERSAHAKEMETMQ-----AKLMKIIKEKEDSLEAVKARLDSae 720
Cdd:pfam06160 182 EKLE----EETDALEELmedipplyeelktelpdQLEELKEGYREMEEEGyalehLNVDKEIQQLEEQLEENLALLEN-- 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 721 dqhlVEMEDTLNKLQEAEIKVKEL-EVLQAKYTEQSEVIGNFtsqlsavkEKLLD-LDALRKANSEGKLELETLRQ--QL 796
Cdd:pfam06160 256 ----LELDEAEEALEEIEERIDQLyDLLEKEVDAKKYVEKNL--------PEIEDyLEHAEEQNKELKEELERVQQsyTL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 797 EGAEKQI-KNLETERNAESSKANSITKELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQD 875
Cdd:pfam06160 324 NENELERvRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLDE 403
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568937393 876 TVNKLH----------------QKEEQFNVLSSELEKLRENLT----DMEAKFKEKDDREDQLVKAKEKLEN 927
Cdd:pfam06160 404 FKLELReikrlveksnlpglpeSYLDYFFDVSDEIEDLADELNevplNMDEVNRLLDEAQDDVDTLYEKTEE 475
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
381-809 |
1.52e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.90 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 381 TSHVGEIEQELALARDGHDQ-HVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEesitkgdleqksp 459
Cdd:PRK04778 78 TNSLPDIEEQLFEAEELNDKfRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQ------------- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 460 isedpenTQTKLEHARTKELEQSLLFEKTkADKLQRELED-----TRVATVSEKSRIMELEKDLALRAQEVAELRRRLEs 534
Cdd:PRK04778 145 -------LKDLYRELRKSLLANRFSFGPA-LDELEKQLENleeefSQFVELTESGDYVEAREILDQLEEELAALEQIME- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 535 skppgdvdmslsllqEISALQEKLEaihTDHQGEMTSLK--------EHFGAREEAFQKEIKALHTATEKLSKENESLrs 606
Cdd:PRK04778 216 ---------------EIPELLKELQ---TELPDQLQELKagyrelveEGYHLDHLDIEKEIQDLKEQIDENLALLEEL-- 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 607 KLDHANKENSDV---IALWKSKLETAIASHQQAMEELKVsFSKGIGTDSAEFAELKTQIERLRLDYQ---HEIESLQSkq 680
Cdd:PRK04778 276 DLDEAEEKNEEIqerIDQLYDILEREVKARKYVEKNSDT-LPDFLEHAKEQNKELKEEIDRVKQSYTlneSELESVRQ-- 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 681 dsersaHAKEMETMQAKLMKIIK----------EKEDSLEAVKARLDSAEDQHlVEMEDTLNKLQEAEIKVKE-LEVLQA 749
Cdd:PRK04778 353 ------LEKQLESLEKQYDEITEriaeqeiaysELQEELEEILKQLEEIEKEQ-EKLSEMLQGLRKDELEAREkLERYRN 425
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568937393 750 K------YTEQSEVIGNFTSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETE 809
Cdd:PRK04778 426 KlheikrYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
347-614 |
1.65e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 347 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlardghdqhvlELEAKMDQLRTMVEAADREKVEL 426
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 427 LNQLEEEKRKVEDLQFRVEeesitkgdlEQKSPISEDPENTQTKLEHARTKeleqsLLFEKTKADKLQRELEDTRVATVS 506
Cdd:COG4942 82 EAELAELEKEIAELRAELE---------AQKEELAELLRALYRLGRQPPLA-----LLLSPEDFLDAVRRLQYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 507 EKSRIMELEKDLalraQEVAELRRRLESSKppgdvDMSLSLLQEISALQEKLEAIHTDHQGEMTSLKehfgAREEAFQKE 586
Cdd:COG4942 148 RREQAEELRADL----AELAALRAELEAER-----AELEALLAELEEERAALEALKAERQKLLARLE----KELAELAAE 214
|
250 260
....*....|....*....|....*...
gi 568937393 587 IKALHTATEKLSKENESLRSKLDHANKE 614
Cdd:COG4942 215 LAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
834-1079 |
1.73e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 834 LQDSLNQVNQVKETLEKELQTLKEKfASTSEEAVSA-QTRmqdtvNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKD 912
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKE-LEEAEAALEEfRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 913 DREDQLVKAKEKLENDIAEIMkmsgdNSSQLTKMNDELRLKERSVEELQLKLTKANEnasflqksigevTLKAEQSQQQA 992
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHP------------DVIALRAQIAA 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 993 ARKheEEKKELEEKLLELEKKMETSYNQCQDLKAKYEKASSETKTkheeiLQNLQKMLADTEDKLKAAQEANRDLMQDME 1072
Cdd:COG3206 303 LRA--QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAE-----LPELEAELRRLEREVEVARELYESLLQRLE 375
|
....*..
gi 568937393 1073 ELKTQAD 1079
Cdd:COG3206 376 EARLAEA 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
623-840 |
1.86e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 623 KSKLETAIASHQQAMEELKvsfsKGIGTDSAEFAELKTQIERLrldyqheiESLQSKQDSERSAHAKEMETMQAKLMKII 702
Cdd:COG4942 29 LEQLQQEIAELEKELAALK----KEEKALLKQLAALERRIAAL--------ARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 703 KEKEDSLEAVKARLDSAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKYTEQSEVIGNFTSQLSAVKEKLLDLDALRKAN 782
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568937393 783 SEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQ 840
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
762-931 |
2.38e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.35 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 762 TSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLNQV 841
Cdd:pfam05911 656 IDNLSSDPEIPSDGPLVSGSNDLKTEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 842 NQVKETLEKELQTLKEKFASTSEEAVSAQTRmqdtVNKLHQKeeqFNVLSSELEKLRENLTDMEAKFKEkddREDQL--V 919
Cdd:pfam05911 736 KESNSLAETQLKCMAESYEDLETRLTELEAE----LNELRQK---FEALEVELEEEKNCHEELEAKCLE---LQEQLerN 805
|
170
....*....|..
gi 568937393 920 KAKEKLENDIAE 931
Cdd:pfam05911 806 EKKESSNCDADQ 817
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1099-1282 |
2.52e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1099 KEKTETLASLEDTKQTNARLQNELDTLKENnlktVEELNKSKELLSVENQKMEEfKKEIETLKQAAAQKSQQLSALQEEN 1178
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEE----LEELEAELEELREELEKLEK-LLQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1179 VKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSNTLRESEfrkDADEEKASLQKSISLTSALLTEKDAELEKL 1258
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ---DLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180
....*....|....*....|....
gi 568937393 1259 RNEVTVLRGENATAKSLHSVVQTL 1282
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEAR 249
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1043-1223 |
2.54e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1043 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAKAAQT-AEDAMQIMEQMTKEKTETLASLEDTKQTNArLQNE 1121
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKrLELEIEEVEARIKKYEEQLGNVRNNKEYEA-LQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1122 LDTLKENnlktveelnkskelLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEEnvkLAEELGRTRDEVtshQKLEEE 1201
Cdd:COG1579 98 IESLKRR--------------ISDLEDEILELMERIEELEEELAELEAELAELEAE---LEEKKAELDEEL---AELEAE 157
|
170 180
....*....|....*....|..
gi 568937393 1202 RSVLNNQLLEMKKSLPSNTLRE 1223
Cdd:COG1579 158 LEELEAEREELAAKIPPELLAL 179
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
788-995 |
2.66e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 788 ELETLRQQLEGAEKQIKNLETERNAESSKANSITKELQEKELVLTGLQDSLN----QVNQVKETLEKELQTLKEKFASTS 863
Cdd:COG3883 24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAeaeaEIEERREELGERARALYRSGGSVS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 864 E-EAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQ 942
Cdd:COG3883 104 YlDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568937393 943 LTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARK 995
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1056-1382 |
2.70e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 42.15 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1056 KLKAAQEANRDLMQDMEELKTQADKAKaaqtaEDAMQIMEQMTKEKTETLASLEDTKQTNA----RLQNELDTLKENNLK 1131
Cdd:PLN03229 423 KREAVKTPVRELEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLEYTEAviamGLQERLENLREEFSK 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1132 TVEELNKSKELLSVENQK-MEEFKKEI------ETLKQA-----AAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLE 1199
Cdd:PLN03229 498 ANSQDQLMHPVLMEKIEKlKDEFNKRLsrapnyLSLKYKldmlnEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIK 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1200 EERSVLNNQLLEMKKS----LPSNTLRE-SEFRKDADEEKASLQKSISLTSALLTEKDAEL------EKLRNEVTVLRGE 1268
Cdd:PLN03229 578 EKMEALKAEVASSGASsgdeLDDDLKEKvEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTaeqtppPNLQEKIESLNEE 657
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1269 naTAKSLHSVVQTLEsdkvkLELKVKNLELQLKENkrqlSSSSGNTDAQAEEDERAQESQQMIDFLNSviVDLQRKNQDL 1348
Cdd:PLN03229 658 --INKKIERVIRSSD-----LKSKIELLKLEVAKA----SKTPDVTEKEKIEALEQQIKQKIAEALNS--SELKEKFEEL 724
|
330 340 350
....*....|....*....|....*....|....
gi 568937393 1349 KMKVEMMSEAALNGNGEDLNSYDSDDQEKQSKKK 1382
Cdd:PLN03229 725 EAELAAARETAAESNGSLKNDDDKEEDSKEDGSR 758
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
597-837 |
2.76e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 597 LSKENESLRSKLDHANkENSDVIALWKSKLETAIASHQQAMEELKVSfskgigtDSAEFAELKTQIERLR---LDYQHEI 673
Cdd:PHA02562 165 LSEMDKLNKDKIRELN-QQIQTLDMKIDHIQQQIKTYNKNIEEQRKK-------NGENIARKQNKYDELVeeaKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 674 ESLQ------SKQDSERSAHAKEMETMQAKL-------MKIIKEKED---------SLEAVKARLDSAEDQhLVEMEDTL 731
Cdd:PHA02562 237 EELTdellnlVMDIEDPSAALNKLNTAAAKIkskieqfQKVIKMYEKggvcptctqQISEGPDRITKIKDK-LKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 732 NKLQEAeikVKELEVLQAKYTEQSEVIGNFTSQLSAVKEkllDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERN 811
Cdd:PHA02562 316 EKLDTA---IDELEEIMDEFNEQSKKLLELKNKISTNKQ---SLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389
|
250 260
....*....|....*....|....*.
gi 568937393 812 AESSKANSITKELQEKELVLTGLQDS 837
Cdd:PHA02562 390 KIVKTKSELVKEKYHRGIVTDLLKDS 415
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
356-536 |
3.10e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 356 LKEKQQHIEQLLAE---------RDLERAEVAKATSHvGEIEQELALAR------DGHDQHVLELEAKMDQLRTMVEAAD 420
Cdd:pfam17380 355 QEERKRELERIRQEeiameisrmRELERLQMERQQKN-ERVRQELEAARkvkileEERQRKIQQQKVEMEQIRAEQEEAR 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 421 REKVELLNqlEEEKRKVEdlqfRVEEESITKgdlEQKSPISEDPENTQTKLEHARTKELEQSLLFEKTKADKLQRELEDT 500
Cdd:pfam17380 434 QREVRRLE--EERAREME----RVRLEEQER---QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEER 504
|
170 180 190
....*....|....*....|....*....|....*.
gi 568937393 501 RVATVSEKSRIMELEKDLALRAQEVAELRRRLESSK 536
Cdd:pfam17380 505 KQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEE 540
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
772-1283 |
4.08e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 41.71 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 772 LLDLDALRKANSEGKLELETLRQQLEGAEKQIKNLETERNAEssKANSITKELQEKELVLTGLQDSLNQVNqvketleKE 851
Cdd:PRK10246 249 LTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPAR--QLRPHWERIQEQSAALAHTRQQIEEVN-------TR 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 852 LQTLKEKFASTSEEAVSAQTRMQDTVNKLHQ---KEEQFNVLSSELEKLRenltdmeAKFKEKDDREDQLVKAKEKLend 928
Cdd:PRK10246 320 LQSTMALRARIRHHAAKQSAELQAQQQSLNTwlaEHDRFRQWNNELAGWR-------AQFSQQTSDREQLRQWQQQL--- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 929 iaeimkmsgdnssqltkmnDELRLKERSVEELQLKLTkANENASFLqksigevtlkAEQSQQQAARKHEEEKKELEEKLL 1008
Cdd:PRK10246 390 -------------------THAEQKLNALPAITLTLT-ADEVAAAL----------AQHAEQRPLRQRLVALHGQIVPQQ 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1009 ELEKKMETSYNQCQDLKAKYEKASSETKTKHEEILQNLQ--KMLADTEDKLKAAqEANRDLMQDMEEL------------ 1074
Cdd:PRK10246 440 KRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLAdvKTICEQEARIKDL-EAQRAQLQAGQPCplcgstshpave 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1075 KTQADKAKAAQTAEDAM-QIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEf 1153
Cdd:PRK10246 519 AYQALEPGVNQSRLDALeKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDD- 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1154 kkeIETLKQAAAQKSQQLSALQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKSLPSN-------TLRESEF 1226
Cdd:PRK10246 598 ---IQPWLDAQEEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEdeeaswlATRQQEA 674
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568937393 1227 R--KDADEEKASLQKSISLTSALLTEKDAELEKLRNEVTV----LRGENATAKSLHSVVQTLE 1283
Cdd:PRK10246 675 QswQQRQNELTALQNRIQQLTPLLETLPQSDDLPHSEETValdnWRQVHEQCLSLHSQLQTLQ 737
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
846-1332 |
4.14e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 846 ETLEkELQTLKEKFASTSEEAvsAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLVKAKEKL 925
Cdd:COG4913 252 ELLE-PIRELAERYAAARERL--AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 926 ENDIAEImkmSGDNSSQLtkmndelrlkERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQQQAARKHEEEKKELEE 1005
Cdd:COG4913 329 EAQIRGN---GGDRLEQL----------EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1006 KLLELEKKMETSYnqcqDLKAKYEKASSETKTKHEEIL----------QNLQKMLADTEDKLKAAQEANR---DLMQDME 1072
Cdd:COG4913 396 LEEELEALEEALA----EAEAALRDLRRELRELEAEIAslerrksnipARLLALRDALAEALGLDEAELPfvgELIEVRP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1073 E-----------LKTQA-------DKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAR-LQNELDTlKENNLKT- 1132
Cdd:COG4913 472 EeerwrgaiervLGGFAltllvppEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDsLAGKLDF-KPHPFRAw 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1133 -VEELNKSKELLSVENQkmEEFKKE--------------------------------------IETLKQAAAQKSQQLSA 1173
Cdd:COG4913 551 lEAELGRRFDYVCVDSP--EELRRHpraitragqvkgngtrhekddrrrirsryvlgfdnrakLAALEAELAELEEELAE 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1174 LQEENVKLAEELGRTRDEVTSHQKLEE-------------ERSVLNNQLLEMKKSlpSNTLRESEFR-KDADEEKASLQK 1239
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAEyswdeidvasaerEIAELEAELERLDAS--SDDLAALEEQlEELEAELEELEE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1240 SISLTSALLTEKDAELEKLRNEVTVLRGENATAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQlssssgntDAQAE 1319
Cdd:COG4913 707 ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE--------RIDAL 778
|
570
....*....|...
gi 568937393 1320 EDERAQESQQMID 1332
Cdd:COG4913 779 RARLNRAEEELER 791
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
489-955 |
4.62e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 489 KADKLQRELEDTRVATVSEKSRIMELEKDLALRAQEVAELRRRLESSKPpgdvdmSLSLLQEISALQEKLEAihtdHQGE 568
Cdd:PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD------HLNLVQTALRQQEKIER----YQAD 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 569 MTSLKEhfgAREEafQKEIKALhtATEKLskenESLRSKLDHANKENSDvialwkskLETAIASHQQAMEELkvsfskgi 648
Cdd:PRK04863 357 LEELEE---RLEE--QNEVVEE--ADEQQ----EENEARAEAAEEEVDE--------LKSQLADYQQALDVQ-------- 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 649 gtdsaefaelktqiERLRLDYQHEIESLQSKQD--SERSAHAKEMETMQAKLMKIIKEKEDSLEAVKARLDSAE---DQH 723
Cdd:PRK04863 410 --------------QTRAIQYQQAVQALERAKQlcGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQaahSQF 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 724 LVEMEdTLNKL------QEAEIKVKELEvlqAKYTEQSEVIGnftsQLSAVKEKLLDLD-ALRKANSegkleLETLRQQL 796
Cdd:PRK04863 476 EQAYQ-LVRKIagevsrSEAWDVARELL---RRLREQRHLAE----QLQQLRMRLSELEqRLRQQQR-----AERLLAEF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 797 EGaeKQIKNLETERNAESskansitkELQEKELVLTGLQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTrMQDT 876
Cdd:PRK04863 543 CK--RLGKNLDDEDELEQ--------LQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLA-AQDA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 877 VNKL--HQKEEQFNvlSSELEKLRENLTDMEAKFKEKddrEDQLVKAKEKLEndiAEIMKMSGDNSSQLTKMNdelRLKE 954
Cdd:PRK04863 612 LARLreQSGEEFED--SQDVTEYMQQLLERERELTVE---RDELAARKQALD---EEIERLSQPGGSEDPRLN---ALAE 680
|
.
gi 568937393 955 R 955
Cdd:PRK04863 681 R 681
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1054-1180 |
5.00e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1054 EDKLKAAQEANRDLMQD----MEELKtqadKAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNARLQNELDTLKENN 1129
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEakkeAEAIK----KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 568937393 1130 LKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVK 1180
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK 156
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
689-934 |
5.62e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.66 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 689 KEMETMQAKLMKIIKEKEDSLEAVKARLDSAEDQ--HLVEMEDTLNK-----LQEAEIKVKELEVLQAKYTEQSEVIGNF 761
Cdd:COG1340 4 DELSSSLEELEEKIEELREEIEELKEKRDELNEElkELAEKRDELNAqvkelREEAQELREKRDELNEKVKELKEERDEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 762 TSQLSAVKEKLLDLDALRKANSEGKLELETLRQQLEGAEKQIKNleternaesskaNSITKElQEKELV--LTGLQDSLN 839
Cdd:COG1340 84 NEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQT------------EVLSPE-EEKELVekIKELEKELE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 840 QVNQVKEtLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKFKEKDDREDQLV 919
Cdd:COG1340 151 KAKKALE-KNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELH 229
|
250
....*....|....*
gi 568937393 920 KAKEKLENDIAEIMK 934
Cdd:COG1340 230 EEIIELQKELRELRK 244
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
789-1385 |
7.39e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 789 LETLRQQLEGAEKQIKNLETernAESSKANSITKELQEKELVLTGLQDslnQVNQVKETLEKELQTLKEKFASTSE--EA 866
Cdd:pfam12128 253 LESAELRLSHLHFGYKSDET---LIASRQEERQETSAELNQLLRTLDD---QWKEKRDELNGELSAADAAVAKDRSelEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 867 VSAQTR--MQDTVNKLHQKEEQFNVLSSELEKLRENLT-------DMEAKF-----KEKDDREDQLVKAKEKLENDIAEI 932
Cdd:pfam12128 327 LEDQHGafLDADIETAAADQEQLPSWQSELENLEERLKaltgkhqDVTAKYnrrrsKIKEQNNRDIAGIKDKLAKIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 933 MKMSGDNSSQLTKMNDELRlkersvEELQLKLTKANENASFLQKSIGEvtLKAEQSQQQAarkheeekkeleekLLELEK 1012
Cdd:pfam12128 407 DRQLAVAEDDLQALESELR------EQLEAGKLEFNEEEYRLKSRLGE--LKLRLNQATA--------------TPELLL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1013 KMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAkaAQTAEDAMQ 1092
Cdd:pfam12128 465 QLENFDERIERAREEQEAANAEVERLQSELRQ-ARKRRDQASEALRQASRRLEERQSALDELELQLFPQ--AGTLLHFLR 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1093 IMEQMTKEKTETLASLEDTKQTNarLQNELDTLKENNLKTVEELNkskelLSVENQKMEEFKKEIETLKQAAAQKSQQLS 1172
Cdd:pfam12128 542 KEAPDWEQSIGKVISPELLHRTD--LDPEVWDGSVGGELNLYGVK-----LDLKRIDVPEWAASEEELRERLDKAEEALQ 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1173 ALQEENVKLAEELGRTRDEVTSHQK-LEEERSVLNN------QLLEMKKSLPSNTLRESEFRKDADEEkaSLQKSISLTS 1245
Cdd:pfam12128 615 SAREKQAAAEEQLVQANGELEKASReETFARTALKNarldlrRLFDEKQSEKDKKNKALAERKDSANE--RLNSLEAQLK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1246 ALLTEKDAELEKLRNEVTVLRG---------ENATAKSLHSVVQTLESDKVKLELKVKNLElqlKENKRQLSSSSGNTDa 1316
Cdd:pfam12128 693 QLDKKHQAWLEEQKEQKREARTekqaywqvvEGALDAQLALLKAAIAARRSGAKAELKALE---TWYKRDLASLGVDPD- 768
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568937393 1317 qaeederaqesqqmidflnsVIVDLQRKNQDLKMKVEMMSeaalnGNGEDLNSYDSDDQEKQSKKKPRL 1385
Cdd:pfam12128 769 --------------------VIAKLKREIRTLERKIERIA-----VRRQEVLRYFDWYQETWLQRRPRL 812
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
358-618 |
7.99e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 358 EKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKV 437
Cdd:TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 438 EDLQFRVEEESITKGDLEqkspisEDPENTQTKLEHARTKELEQSLLFEKtkadklqreledtrvatvsEKSRIMELEKD 517
Cdd:TIGR02169 871 EELEAALRDLESRLGDLK------KERDELEAQLRELERKIEELEAQIEK-------------------KRKRLSELKAK 925
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 518 LALRAQEVAELRRRLESSKPPGDVDMSLSLLQEisALQEKLEAIHTDHQGEMTSLKEHfgAREEAFQKEIKALHtatEKL 597
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEEELSLEDVQA--ELQRVEEEIRALEPVNMLAIQEY--EEVLKRLDELKEKR---AKL 998
|
250 260
....*....|....*....|.
gi 568937393 598 SKENESLRSKLDHANKENSDV 618
Cdd:TIGR02169 999 EEERKAILERIEEYEKKKREV 1019
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
834-1190 |
8.80e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 834 LQDSLNQVNQVKETLEKELQTLKEKFASTSEEAVSAQTRMQDTVNKLhqkEEQFNVLSSELEKLRENLTDMEAKFKEKDD 913
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRREL---ESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 914 REDQLVKAKEKLendiaeiMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKANENASFLQKSIGEVTLKAEQSQqqaa 993
Cdd:pfam07888 109 SSEELSEEKDAL-------LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ---- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 994 rkheeekkeleeklleleKKMETSYNQCQDLKAKYEKASSETKTKHEEILQnLQKMLADTEDKLKAAQEANRDLMQDMEE 1073
Cdd:pfam07888 178 ------------------AKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQ-LQDTITTLTQKLTTAHRKEAENEALLEE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1074 LKTQADKAKAAQTAEDAMqimeqmtKEKTETLASLEDTKQTN---ARLQNELDTLK--ENNLKTVEELNKSKELLSVENQ 1148
Cdd:pfam07888 239 LRSLQERLNASERKVEGL-------GEELSSMAAQRDRTQAElhqARLQAAQLTLQlaDASLALREGRARWAQERETLQQ 311
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568937393 1149 KMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRTRD 1190
Cdd:pfam07888 312 SAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKD 353
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
1169-1344 |
9.05e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 40.01 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1169 QQLSALQEENVKLAEELGRTRDEVTshqKLEEERSvLNNQLLemkkSLPSNTLRESEF------RKDADEEKASLQKSIS 1242
Cdd:pfam04849 94 KQNSVLTERNEALEEQLGSAREEIL---QLRHELS-KKDDLL----QIYSNDAEESETesscstPLRRNESFSSLHGCVQ 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1243 LTsaLLTEKDAELE----KLRNEVTVLRGENATaksLHSVVQTLESDKVKlelkvknlelQLKENKRQLSSSSGNTDAQA 1318
Cdd:pfam04849 166 LD--ALQEKLRGLEeenlKLRSEASHLKTETDT---YEEKEQQLMSDCVE----------QLSEANQQMAELSEELARKM 230
|
170 180
....*....|....*....|....*.
gi 568937393 1319 EEDERAQESqqmIDFLNSVIVDLQRK 1344
Cdd:pfam04849 231 EENLRQQEE---ITSLLAQIVDLQHK 253
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1033-1172 |
9.20e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 9.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1033 SETKTKHEEILQNLQKMLADTEDKLKAAQEANRDLMQDMEELK-----TQADKAKAAQTAEDAMQIMEQMTKEKTETLAS 1107
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRaslsaAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568937393 1108 LEDTKQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQ----AAAQKSQQLS 1172
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRrlnvALAQRVQELN 193
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1043-1216 |
9.21e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 9.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1043 LQNLQKMLADTEDKLKAAQEANR---------DLMQDMEELKTQADKAKAA-QTAEDAMQIMEQMTKEKTETLASLEDT- 1111
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGlvdlseeakLLLQQLSELESQLAEARAElAEAEARLAALRAQLGSGPDALPELLQSp 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568937393 1112 ---------KQTNARLQNELDTLKENNLKTVEELNKSKELLSVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLA 1182
Cdd:COG3206 264 viqqlraqlAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARL 343
|
170 180 190
....*....|....*....|....*....|....
gi 568937393 1183 EELGRTRDEVtshQKLEEERSVLNNQLLEMKKSL 1216
Cdd:COG3206 344 AELPELEAEL---RRLEREVEVARELYESLLQRL 374
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