NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|568930624|ref|XP_006538631|]
View 

heterochromatin protein 1-binding protein 3 isoform X4 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
H15 cd00073
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ...
 157-241 3.53e-22

linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber


:

Pssm-ID: 238028 [Multi-domain]  Cd Length: 88  Bit Score: 90.76  E-value: 3.53e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624 157 SSPRPKMDAILTEAIKACFQKTGASVVAIRKYIIHKYPsLGLERRGYLLKQALKRELNRGVIRQVKGKGASGSFVVVQKS 236
Cdd:cd00073    1 PPSHPPYSEMVTEAIKALKERKGSSLQAIKKYIEAKYK-VDDENFNKLLKLALKKGVAKGKLVQVKGTGASGSFKLSKKK 79


                 ....*
gi 568930624 237 KPPQK 241
Cdd:cd00073   80 KKKKK 84
Linker_histone pfam00538
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ...
 342-409 2.07e-19

linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.


:

Pssm-ID: 459846 [Multi-domain]  Cd Length: 71  Bit Score: 82.19  E-value: 2.07e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568930624  342 MEYAILSAIAAMNEPKTCSTTALKKYVLENHPGANSNYQMHLLKKTLQKCEKNGWLEQISGKGFSGTF 409
Cdd:pfam00538   4 YSDMIKEAIKALKERKGSSRQAIKKYIKANYKVGDVAKFNSLLKRALKKGVEKGTLVQPKGTGASGSF 71
Linker_histone pfam00538
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ...
 266-326 1.18e-10

linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.


:

Pssm-ID: 459846 [Multi-domain]  Cd Length: 71  Bit Score: 57.54  E-value: 1.18e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568930624  266 AFTRLCEPKEASYSLIRKYVSQYYPKLRVDIRPQLLKNALQRAVERGQLEQITGKGASGTF 326
Cdd:pfam00538  11 AIKALKERKGSSRQAIKKYIKANYKVGDVAKFNSLLKRALKKGVEKGTLVQPKGTGASGSF 71
LGT super family cl00478
Prolipoprotein diacylglyceryl transferase;
14-160 2.48e-04

Prolipoprotein diacylglyceryl transferase;


The actual alignment was detected with superfamily member PRK13108:

Pssm-ID: 469786 [Multi-domain]  Cd Length: 460  Bit Score: 43.81  E-value: 2.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624  14 KALPLIVGAQLIHADKLGEKAEDTTMPIRRAVNSTRETPPKSKLAEGE---EEKPEPDGSSEESistvEEQENETPPATS 90
Cdd:PRK13108 313 SAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTpavEETSEADIEREQP----GDLAGQAPAAHQ 388

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624  91 SEAEQPKGEPESGEKEENNNKSAEEPKKDEKDQSKEKEKKVKKTIPAWATLSASQLARAQRQTPMASSPR 160
Cdd:PRK13108 389 VDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRRR 458
PRK13808 super family cl31642
adenylate kinase; Provisional
 455-554 3.97e-04

adenylate kinase; Provisional


The actual alignment was detected with superfamily member PRK13808:

Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 42.57  E-value: 3.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624 455 KRSLQKKTPAKSQGKTASMKQRGSKPARKVPAAQRGKVRPLPKKAPPKAKTPARKARPSPSVIKKPSGSSSRKPiASARK 534
Cdd:PRK13808 219 AKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGK-AKAKK 297

                         90       100
                 ....*....|....*....|
gi 568930624 535 EAKLPGKGKSAMKKSFKTKK 554
Cdd:PRK13808 298 KAGKKAAAGSKAKATAKAPK 317
 
Name Accession Description Interval E-value
H15 cd00073
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ...
 157-241 3.53e-22

linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber


Pssm-ID: 238028 [Multi-domain]  Cd Length: 88  Bit Score: 90.76  E-value: 3.53e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624 157 SSPRPKMDAILTEAIKACFQKTGASVVAIRKYIIHKYPsLGLERRGYLLKQALKRELNRGVIRQVKGKGASGSFVVVQKS 236
Cdd:cd00073    1 PPSHPPYSEMVTEAIKALKERKGSSLQAIKKYIEAKYK-VDDENFNKLLKLALKKGVAKGKLVQVKGTGASGSFKLSKKK 79


                 ....*
gi 568930624 237 KPPQK 241
Cdd:cd00073   80 KKKKK 84
Linker_histone pfam00538
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ...
 160-230 1.09e-19

linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.


Pssm-ID: 459846 [Multi-domain]  Cd Length: 71  Bit Score: 82.96  E-value: 1.09e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568930624  160 RPKMDAILTEAIKACFQKTGASVVAIRKYIIHKYPSLGLERRGYLLKQALKRELNRGVIRQVKGKGASGSF 230
Cdd:pfam00538   1 HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKVGDVAKFNSLLKRALKKGVEKGTLVQPKGTGASGSF 71
Linker_histone pfam00538
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ...
 342-409 2.07e-19

linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.


Pssm-ID: 459846 [Multi-domain]  Cd Length: 71  Bit Score: 82.19  E-value: 2.07e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568930624  342 MEYAILSAIAAMNEPKTCSTTALKKYVLENHPGANSNYQMHLLKKTLQKCEKNGWLEQISGKGFSGTF 409
Cdd:pfam00538   4 YSDMIKEAIKALKERKGSSRQAIKKYIKANYKVGDVAKFNSLLKRALKKGVEKGTLVQPKGTGASGSF 71
H15 smart00526
Domain in histone families 1 and 5;
157-223 2.93e-14

Domain in histone families 1 and 5;


Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 67.60  E-value: 2.93e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568930624   157 SSPRPKMDAILTEAIKACFQKTGASVVAIRKYIIHKYPSLGlERRGYLLKQALKRELNRGVIRQVKG 223
Cdd:smart00526   1 PPSHPPYSEMIVEAISALKERKGSSLQAIKKYIEANYKVLP-NNFRKLLKLALKRLVASGKLVQVKG 66
Linker_histone pfam00538
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ...
 266-326 1.18e-10

linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.


Pssm-ID: 459846 [Multi-domain]  Cd Length: 71  Bit Score: 57.54  E-value: 1.18e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568930624  266 AFTRLCEPKEASYSLIRKYVSQYYPKLRVDIRPQLLKNALQRAVERGQLEQITGKGASGTF 326
Cdd:pfam00538  11 AIKALKERKGSSRQAIKKYIKANYKVGDVAKFNSLLKRALKKGVEKGTLVQPKGTGASGSF 71
H15 smart00526
Domain in histone families 1 and 5;
253-319 5.31e-10

Domain in histone families 1 and 5;


Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 55.28  E-value: 5.31e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568930624   253 PEPQVKLEDVLPLAFTRLCEPKEASYSLIRKYVSQYYPKLRVDIRPqLLKNALQRAVERGQLEQITG 319
Cdd:smart00526   1 PPSHPPYSEMIVEAISALKERKGSSLQAIKKYIEANYKVLPNNFRK-LLKLALKRLVASGKLVQVKG 66
H15 smart00526
Domain in histone families 1 and 5;
346-402 1.04e-09

Domain in histone families 1 and 5;


Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 54.51  E-value: 1.04e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568930624   346 ILSAIAAMNEPKTCSTTALKKYVLENHPGaNSNYQMHLLKKTLQKCEKNGWLEQISG 402
Cdd:smart00526  11 IVEAISALKERKGSSLQAIKKYIEANYKV-LPNNFRKLLKLALKRLVASGKLVQVKG 66
H15 cd00073
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ...
 346-412 2.42e-06

linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber


Pssm-ID: 238028 [Multi-domain]  Cd Length: 88  Bit Score: 45.69  E-value: 2.42e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568930624 346 ILSAIAAMNEPKTCSTTALKKYVLENHPGANSNYQMHlLKKTLQKCEKNGWLEQISGKGFSGTFQLS 412
Cdd:cd00073   11 VTEAIKALKERKGSSLQAIKKYIEAKYKVDDENFNKL-LKLALKKGVAKGKLVQVKGTGASGSFKLS 76
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 14-160 2.48e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.81  E-value: 2.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624  14 KALPLIVGAQLIHADKLGEKAEDTTMPIRRAVNSTRETPPKSKLAEGE---EEKPEPDGSSEESistvEEQENETPPATS 90
Cdd:PRK13108 313 SAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTpavEETSEADIEREQP----GDLAGQAPAAHQ 388

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624  91 SEAEQPKGEPESGEKEENNNKSAEEPKKDEKDQSKEKEKKVKKTIPAWATLSASQLARAQRQTPMASSPR 160
Cdd:PRK13108 389 VDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRRR 458
PRK13808 PRK13808
adenylate kinase; Provisional
 455-554 3.97e-04

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 42.57  E-value: 3.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624 455 KRSLQKKTPAKSQGKTASMKQRGSKPARKVPAAQRGKVRPLPKKAPPKAKTPARKARPSPSVIKKPSGSSSRKPiASARK 534
Cdd:PRK13808 219 AKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGK-AKAKK 297

                         90       100
                 ....*....|....*....|
gi 568930624 535 EAKLPGKGKSAMKKSFKTKK 554
Cdd:PRK13808 298 KAGKKAAAGSKAKATAKAPK 317
 
Name Accession Description Interval E-value
H15 cd00073
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ...
 157-241 3.53e-22

linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber


Pssm-ID: 238028 [Multi-domain]  Cd Length: 88  Bit Score: 90.76  E-value: 3.53e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624 157 SSPRPKMDAILTEAIKACFQKTGASVVAIRKYIIHKYPsLGLERRGYLLKQALKRELNRGVIRQVKGKGASGSFVVVQKS 236
Cdd:cd00073    1 PPSHPPYSEMVTEAIKALKERKGSSLQAIKKYIEAKYK-VDDENFNKLLKLALKKGVAKGKLVQVKGTGASGSFKLSKKK 79


                 ....*
gi 568930624 237 KPPQK 241
Cdd:cd00073   80 KKKKK 84
Linker_histone pfam00538
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ...
 160-230 1.09e-19

linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.


Pssm-ID: 459846 [Multi-domain]  Cd Length: 71  Bit Score: 82.96  E-value: 1.09e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568930624  160 RPKMDAILTEAIKACFQKTGASVVAIRKYIIHKYPSLGLERRGYLLKQALKRELNRGVIRQVKGKGASGSF 230
Cdd:pfam00538   1 HPPYSDMIKEAIKALKERKGSSRQAIKKYIKANYKVGDVAKFNSLLKRALKKGVEKGTLVQPKGTGASGSF 71
Linker_histone pfam00538
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ...
 342-409 2.07e-19

linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.


Pssm-ID: 459846 [Multi-domain]  Cd Length: 71  Bit Score: 82.19  E-value: 2.07e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568930624  342 MEYAILSAIAAMNEPKTCSTTALKKYVLENHPGANSNYQMHLLKKTLQKCEKNGWLEQISGKGFSGTF 409
Cdd:pfam00538   4 YSDMIKEAIKALKERKGSSRQAIKKYIKANYKVGDVAKFNSLLKRALKKGVEKGTLVQPKGTGASGSF 71
H15 smart00526
Domain in histone families 1 and 5;
157-223 2.93e-14

Domain in histone families 1 and 5;


Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 67.60  E-value: 2.93e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568930624   157 SSPRPKMDAILTEAIKACFQKTGASVVAIRKYIIHKYPSLGlERRGYLLKQALKRELNRGVIRQVKG 223
Cdd:smart00526   1 PPSHPPYSEMIVEAISALKERKGSSLQAIKKYIEANYKVLP-NNFRKLLKLALKRLVASGKLVQVKG 66
Linker_histone pfam00538
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ...
 266-326 1.18e-10

linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.


Pssm-ID: 459846 [Multi-domain]  Cd Length: 71  Bit Score: 57.54  E-value: 1.18e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568930624  266 AFTRLCEPKEASYSLIRKYVSQYYPKLRVDIRPQLLKNALQRAVERGQLEQITGKGASGTF 326
Cdd:pfam00538  11 AIKALKERKGSSRQAIKKYIKANYKVGDVAKFNSLLKRALKKGVEKGTLVQPKGTGASGSF 71
H15 smart00526
Domain in histone families 1 and 5;
253-319 5.31e-10

Domain in histone families 1 and 5;


Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 55.28  E-value: 5.31e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568930624   253 PEPQVKLEDVLPLAFTRLCEPKEASYSLIRKYVSQYYPKLRVDIRPqLLKNALQRAVERGQLEQITG 319
Cdd:smart00526   1 PPSHPPYSEMIVEAISALKERKGSSLQAIKKYIEANYKVLPNNFRK-LLKLALKRLVASGKLVQVKG 66
H15 smart00526
Domain in histone families 1 and 5;
346-402 1.04e-09

Domain in histone families 1 and 5;


Pssm-ID: 197772 [Multi-domain]  Cd Length: 66  Bit Score: 54.51  E-value: 1.04e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568930624   346 ILSAIAAMNEPKTCSTTALKKYVLENHPGaNSNYQMHLLKKTLQKCEKNGWLEQISG 402
Cdd:smart00526  11 IVEAISALKERKGSSLQAIKKYIEANYKV-LPNNFRKLLKLALKRLVASGKLVQVKG 66
H15 cd00073
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ...
 346-412 2.42e-06

linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber


Pssm-ID: 238028 [Multi-domain]  Cd Length: 88  Bit Score: 45.69  E-value: 2.42e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568930624 346 ILSAIAAMNEPKTCSTTALKKYVLENHPGANSNYQMHlLKKTLQKCEKNGWLEQISGKGFSGTFQLS 412
Cdd:cd00073   11 VTEAIKALKERKGSSLQAIKKYIEAKYKVDDENFNKL-LKLALKKGVAKGKLVQVKGTGASGSFKLS 76
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 14-160 2.48e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.81  E-value: 2.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624  14 KALPLIVGAQLIHADKLGEKAEDTTMPIRRAVNSTRETPPKSKLAEGE---EEKPEPDGSSEESistvEEQENETPPATS 90
Cdd:PRK13108 313 SAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTpavEETSEADIEREQP----GDLAGQAPAAHQ 388

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624  91 SEAEQPKGEPESGEKEENNNKSAEEPKKDEKDQSKEKEKKVKKTIPAWATLSASQLARAQRQTPMASSPR 160
Cdd:PRK13108 389 VDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRRR 458
PRK13808 PRK13808
adenylate kinase; Provisional
 455-554 3.97e-04

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 42.57  E-value: 3.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624 455 KRSLQKKTPAKSQGKTASMKQRGSKPARKVPAAQRGKVRPLPKKAPPKAKTPARKARPSPSVIKKPSGSSSRKPiASARK 534
Cdd:PRK13808 219 AKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGK-AKAKK 297

                         90       100
                 ....*....|....*....|
gi 568930624 535 EAKLPGKGKSAMKKSFKTKK 554
Cdd:PRK13808 298 KAGKKAAAGSKAKATAKAPK 317
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 21-151 4.51e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.04  E-value: 4.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624  21 GAQLIHADKLGEKAEDTTMPIRRAVNSTRETPPKSK-LAEGEEEKPEPDGSSEESISTVEEQENETPPATSSEAEQPKGE 99
Cdd:PRK13108 329 VAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEeTSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEA 408

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 568930624 100 PESGEKEENNnKSAEEPKKDEKDQSKEKEKKVKKTIPAWATLSASQLARAQR 151
Cdd:PRK13108 409 HDETEPEVPE-KAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRRRR 459
PRK13808 PRK13808
adenylate kinase; Provisional
 426-554 4.61e-04

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 42.57  E-value: 4.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624 426 KESGGSDDEDEDDDDDESSEDSEDEEPPPKRSLQKKTPAKSQGKTASmkqRGSKPARKVPAAQRGKVRPLPKKAPPKAKT 505
Cdd:PRK13808 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAA---KAAKKAKKTAKKALKKAAKAVKKAAKKAAK 276

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 568930624 506 PARKARPSPSVIKKPSGSSSRKP--IASARKEAKLPGKGKSAMKKSFKTKK 554
Cdd:PRK13808 277 AAAKAAKGAAKATKGKAKAKKKAgkKAAAGSKAKATAKAPKRGAKGKKAKK 327
PRK13808 PRK13808
adenylate kinase; Provisional
 471-554 5.89e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 39.10  E-value: 5.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624 471 ASMKQRGSKPARKVPAAQRGKVRPLPKKAPPKAKTPARKArPSPSVIKKPSGSSSRKPIASARKEAKLPGKG--KSAMKK 548
Cdd:PRK13808 192 AAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKA-AKTAVSAKKAAKTAAKAAKKAKKTAKKALKKaaKAVKKA 270


                 ....*.
gi 568930624 549 SFKTKK 554
Cdd:PRK13808 271 AKKAAK 276
valS PRK14900
valyl-tRNA synthetase; Provisional
 456-548 7.81e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 39.20  E-value: 7.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568930624  456 RSLQKKTPAKSQGKTASMKQRGSKPARKVPAAqrgkvrplpKKAPPKaKTPARKARPSPSVIKK-PSGSSSRKPIasARK 534
Cdd:PRK14900  971 AEAVRKTVRRSVKKAAATRAAMKKKVAKKAPA---------KKAAAK-KAAAKKAAAKKKVAKKaPAKKVARKPA--AKK 1038

                          90
                  ....*....|....
gi 568930624  535 EAKLPGKGKSAMKK 548
Cdd:PRK14900 1039 AAKKPARKAAGRKA 1052
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH