|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
214-974 |
8.32e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 8.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 214 ANTEKLKAQLLQIQTELNNSKQEYEEFKELTRKRQLELESELQSLQKANLNLENL---LEATKACKRQEVSQLNKihaet 290
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLER----- 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 291 lkiittptkayqlhsrpvpklSPEMGSFGSLYTQNSSILDNDILNEpvppemneqafeaISEELRTVQEQMSALQAKLDE 370
Cdd:TIGR02168 317 ---------------------QLEELEAQLEELESKLDELAEELAE-------------LEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 371 EEHKNLKLQQHVDKLEHHSTQmqelFSSERIDWTKQQEELLSQLNVLEKQLQETQTKNDFLKSEVHDLRVVLHSADKELS 450
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLET----LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 451 SVKL-EYSSFKTNQEKEFNKLSERHMHVQLQLDNLRLENEKLLESKACLQDSYDNLQEIMKfEIDQLSRNLQNFKKENET 529
Cdd:TIGR02168 439 QAELeELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-NLEGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 530 LKSDLNNLMELLEAEKERNNKLSLQFEEDKEN----SSKEILKVLEAVRQEKQKETAKCEQQMAKVQKLEESLLATEK-- 603
Cdd:TIGR02168 518 LSGILGVLSELISVDEGYEAAIEAALGGRLQAvvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKni 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 604 -----VISSLEKSRDSDKKVVADLMNQIQelrtsvceKTETIDTLKQELKDINCKYNSALVDREesrvLIKKQEVdILDL 678
Cdd:TIGR02168 598 egflgVAKDLVKFDPKLRKALSYLLGGVL--------VVDDLDNALELAKKLRPGYRIVTLDGD----LVRPGGV-ITGG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 679 KETLRLRILSEDIERDMLCEDLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEynf 758
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE--- 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 759 kMRQLEHVMDSAAEDpqspktpphfQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMKEQLREME- 837
Cdd:TIGR02168 742 -VEQLEERIAQLSKE----------LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRa 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 838 ---NLRLESQQLIEKNWLLQGQLDDIKRQKENSDQNHPDNQqlknEQEESIKERLAKSKIVEEMLKMKADLEEVQSALYN 914
Cdd:TIGR02168 811 eltLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS----EDIESLAAEIEELEELIEELESELEALLNERASLE 886
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578806387 915 KEMECLR--MTDEVERTQTLESKAfQEKEQLRSKLEEMYEERERTSQEMEMLRKQV-ECLAEE 974
Cdd:TIGR02168 887 EALALLRseLEELSEELRELESKR-SELRRELEELREKLAQLELRLEGLEVRIDNLqERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
679-969 |
1.85e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 679 KETLRLRILSEDIERdmLCEDLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEYNF 758
Cdd:TIGR02168 222 LRELELALLVLRLEE--LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 759 KMRQLEHVMDSAAEDPQSPKtpphfqtHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMKEQLREMEN 838
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLE-------ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 839 LRLESQQLIEKnwlLQGQLDDIKRQkENSDQNHPDNQQLKNEQEESIKERLAKSKIVEEMLKMKADLEEVQSALYNKEME 918
Cdd:TIGR02168 373 RLEELEEQLET---LRSKVAQLELQ-IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 578806387 919 CLRMTDEVERTQTLESKAFQEKEQLRSKLEEMYEERERTSQEMEMLRKQVE 969
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
408-964 |
5.51e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 5.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 408 EELLSQLNVLEKQlQETQTKNDFLKSEVHDLRVVLHSADKELSSVKLEYSSFKTNQ-EKEFNKLSERHMHVQLQLDNLRL 486
Cdd:COG1196 196 GELERQLEPLERQ-AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEElEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 487 ENEKL-LESKACLQDSYDNLQEIMKFE--IDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLSLQfEEDKENSS 563
Cdd:COG1196 275 ELEELeLELEEAQAEEYELLAELARLEqdIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE-LEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 564 KEILKVLEAVRQEKQKETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTSVCEKTETIDTL 643
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 644 KQELKDINCKYNSALVDREESRVLIKKQEVDILDLKETLRLRILSEDIERdmlcEDLAHATEQLNMLTEASKKHSGLLQS 723
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL----EELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 724 AQEELTKK-----------------------EALIQELQHKLNQKKEEVEQKKNEY---NFKMRQLEHVMDSAAEDPQSP 777
Cdd:COG1196 510 VKAALLLAglrglagavavligveaayeaalEAALAAALQNIVVEDDEVAAAAIEYlkaAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 778 KTPPHFQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDRE-------VKNAEILRMKEQLREMENLRLESQQLIEKN 850
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLeaalrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 851 wLLQGQLDDIKRQKENSDQNHPDNQQLKNEQEESIKERLAKSKIVEEMLKMKADLEEVQSALYNKEMECLRMTDEVERTQ 930
Cdd:COG1196 670 -LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580 590
....*....|....*....|....*....|....
gi 578806387 931 TLESKAFQEKEQLRSKLEemyEERERTSQEMEML 964
Cdd:COG1196 749 EEEALEELPEPPDLEELE---RELERLEREIEAL 779
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
357-955 |
4.68e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 4.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 357 VQEQMSALQAklDEEEHKNLKLQQHVDKLEhhstQMQELFSSERIDWTKQQEELLSQLNVLEKQLQ----ETQTKNDFLK 432
Cdd:pfam15921 243 VEDQLEALKS--ESQNKIELLLQQHQDRIE----QLISEHEVEITGLTEKASSARSQANSIQSQLEiiqeQARNQNSMYM 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 433 SEVHDLRVVLHSADKELSSVKLEYSSFKTNQEKEfnklserhmhvqlqldnLRLENEKLLESKAclqdsydnlqeimkfE 512
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMYEDKIEELEKQ-----------------LVLANSELTEART---------------E 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 513 IDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKL------------SLQFEEDKENSSKEILK-VLEAVRQEKQk 579
Cdd:pfam15921 365 RDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitidHLRRELDDRNMEVQRLEaLLKAMKSECQ- 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 580 etAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTSvcEKTETIDTLKQELKDINCKYNSALV 659
Cdd:pfam15921 444 --GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS--ERTVSDLTASLQEKERAIEATNAEI 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 660 DREESRVLIKKQEVDILDLK-----------ETLRLRIlsedIERDMLCEDLAHATEQLNMLTEASKKHSGLLQSAQEEL 728
Cdd:pfam15921 520 TKLRSRVDLKLQELQHLKNEgdhlrnvqtecEALKLQM----AEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 729 T------------------KKEALIQELQHKLNQKKEEveqKKNEYNFKMRQLEHVMDSAAEDPQSPKTPPHFQTHLAKL 790
Cdd:pfam15921 596 EkeindrrlelqefkilkdKKDAKIRELEARVSDLELE---KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSL 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 791 LETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMKEQLREME-------NLRLESQQLIEKNwllQGQLDDIKRQ 863
Cdd:pfam15921 673 SEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdghamKVAMGMQKQITAK---RGQIDALQSK 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 864 ---KENSDQNHPDNQQLKNEQEESIKERLA-----KSKIVEEMLKMKADLEEVQSALYNKEMECLRMTDEVERTQTLESK 935
Cdd:pfam15921 750 iqfLEEAMTNANKEKHFLKEEKNKLSQELStvateKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR 829
|
650 660
....*....|....*....|
gi 578806387 936 afQEKEQLRSKLEEMYEERE 955
Cdd:pfam15921 830 --QEQESVRLKLQHTLDVKE 847
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
408-739 |
6.44e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 6.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 408 EELLSQLNVLEKQLQETQtKNDFLKSEVHDLRV-----VLHSADKELSSVKLEYSSfktnQEKEFNKLSERHMHVQLQLD 482
Cdd:TIGR02168 196 NELERQLKSLERQAEKAE-RYKELKAELRELELallvlRLEELREELEELQEELKE----AEEELEELTAELQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 483 NLRLENEKLLESKACLQDSYDNLQEimkfEIDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLslqfeEDKENS 562
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKELYALAN----EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL-----AEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 563 SKEILKVLEAVRQEKQKETAKCEqqmAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTSVCEKTETIDT 642
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELE---AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 643 LKQELKDINCKYNSALVDREESRVLIKKQEvdILDLKETLRLRIlsedierdmlcEDLAHATEQLNMLTEASKKHSGLLQ 722
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELEEE--LEELQEELERLE-----------EALEELREELEEAEQALDAAERELA 485
|
330
....*....|....*..
gi 578806387 723 SAQEELTKKEALIQELQ 739
Cdd:TIGR02168 486 QLQARLDSLERLQENLE 502
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
698-969 |
1.61e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.05 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 698 EDLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEynfKMRQLEHVMDSAAEDP--- 774
Cdd:pfam17380 306 EEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELE---RIRQEEIAMEISRMREler 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 775 ---QSPKTPPHFQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMKEQ-LREMENLRLESQQLIEKN 850
Cdd:pfam17380 383 lqmERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEErAREMERVRLEEQERQQQV 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 851 WLLQGQLDDIKRQKENSDQNHPDNQQLKNEQEESIKERLA--KSKIVEEMLKMK---ADLEEVQSALYNKEMEclRMTDE 925
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEerKQAMIEEERKRKlleKEMEERQKAIYEEERR--REAEE 540
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 578806387 926 VERTQTLESKAFQEKEQL------RSKLEEMYEERERTSQEMEMLRKQVE 969
Cdd:pfam17380 541 ERRKQQEMEERRRIQEQMrkateeRSRLEAMEREREMMRQIVESEKARAE 590
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-630 |
2.27e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 344 EQAFEAISEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHHSTQMQELFSSEridwTKQQEELLSQLNVLEKQLQE 423
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL----LAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 424 TQTKNDFLKSEVHDLRVVLHSADKELSSVKLEYSSFKTNQEKefnKLSERHMHVQLQLDNLRLENEKLLESKACLQDSYD 503
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE---AEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 504 NLQEIMKFE--IDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLSLQFEEDKENSSKEILKV--LEAVRQEKQK 579
Cdd:COG1196 391 ALRAAAELAaqLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEeaLLELLAELLE 470
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 578806387 580 ETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELR 630
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
587-820 |
5.35e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 5.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 587 QMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTSVCEKTETIDTLKQELKDINCKYNSALVDREESRV 666
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 667 LIKKQEvdiLDLKETLRLRILSEDIERDML------CEDLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQH 740
Cdd:COG4942 98 ELEAQK---EELAELLRALYRLGRQPPLALllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 741 KLNQKKEEVEQKKNEYNFKMRQLEHVMDSaaedpqspktpphfqthLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDRE 820
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLAR-----------------LEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
679-893 |
6.00e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 6.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 679 KETLRLRILSEDIERDMLCEDLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEYNF 758
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 759 KMRQLEHVMDSAAED----PQSPKTPPHFQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMKEQLR 834
Cdd:COG4942 109 LLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 578806387 835 EMENLRLESQQLIEKnwlLQGQLDDIKRQKENSDQNHPDNQQLKNEQEESIKERLAKSK 893
Cdd:COG4942 189 ALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
554-887 |
6.90e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 6.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 554 QFEEDKENSSKEilkvLEAVRQEKQKETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVA----DLMNQIQEL 629
Cdd:TIGR02169 167 EFDRKKEKALEE----LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkekeALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 630 RTSVCEKTETIDTLKQELKDINCKYNSALVDREE-SRVLIKKQEVDILDLKEtlrlRILSEDIERDMLCEDLAHATEQLN 708
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEElNKKIKDLGEEEQLRVKE----KIGELEAEIASLERSIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 709 MLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEYNFKMRQLEHVMDSAAEDPQSPKTpphfqthLA 788
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD-------YR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 789 KLLETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMKEQLREMENLRLESQQLIEKnwlLQGQLDDIKRQKENSD 868
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK---QEWKLEQLAADLSKYE 468
|
330
....*....|....*....
gi 578806387 869 QNHPDNQQLKNEQEESIKE 887
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSK 487
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
517-1022 |
8.28e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 8.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 517 SRNLQNFKKENETLKSD-LNNLMELLEAEKERNNKLSLQFEEDKENSSKEILKVLEAVRQEKQKETAKCEQQMAKVQKLE 595
Cdd:PTZ00121 1277 ARKADELKKAEEKKKADeAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 596 ESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRtsvceKTETIDTLKQELKDINCKYNSALVDREESRVLIKKQEvdi 675
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK-----KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAE--- 1428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 676 ldlkETLRLRILSEDIERDMLCEDLAHATEQLNMLTEASKKhsgllqsaQEELTKKEALIQELQHKlnQKKEEVEQKKNE 755
Cdd:PTZ00121 1429 ----EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK--------AEEAKKADEAKKKAEEA--KKADEAKKKAEE 1494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 756 YNFKMRQLEHVMDSAAEDPQSPKTPPHFQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDR---EVKNAEILRMKEQ 832
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKkaeEKKKAEEAKKAEE 1574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 833 LREMENLRLESQQLIEKNWLLQGQLDDIKRQKENSDQNHPDNQ------QLKNEQEESIKERLAKSKIVEEMLKMKADLE 906
Cdd:PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEakikaeELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 907 EVQSALYNKEMECLRMTDEVERTQTLESKAFQEK---EQLRSKLEEMYEERERTSQEMEMLRKQVECLAEENGKLVGHQN 983
Cdd:PTZ00121 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKkaaEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
|
490 500 510
....*....|....*....|....*....|....*....
gi 578806387 984 LHQKIQYVVRlKKENVRLAEETEKLRAENVFLKEKKRSE 1022
Cdd:PTZ00121 1735 AKKEAEEDKK-KAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
371-1011 |
9.30e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 9.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 371 EEHKNLKLQQHVDKLEHHSTQMQELFSseridwtkQQEELLSQLNVLEKQLQETQTKNDFLKSEVHDLRVVLHSADKELS 450
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQE--------ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 451 SVKLEYSSFKTN---QEKEFNKLSERHMHVQLQLDNLRLENEKLLESKACLQDSYDNLQEIMKF---------------- 511
Cdd:TIGR02168 292 ALANEISRLEQQkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESleaeleeleaeleele 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 512 --------EIDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLSLQFEEDKENSSKEILKVLEAVRQEKQKETAK 583
Cdd:TIGR02168 372 srleeleeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 584 CEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTSVCEKTETIDTLKQELKDINC----------- 652
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlselisv 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 653 --KYNSAL------------VDREESrvliKKQEVDILDLKETLRLRILSEDIERD------------------------ 694
Cdd:TIGR02168 532 deGYEAAIeaalggrlqavvVENLNA----AKKAIAFLKQNELGRVTFLPLDSIKGteiqgndreilkniegflgvakdl 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 695 ------------------MLCEDLAHATEQLNMLTE---------------------ASKKHSGLLQSAQE--ELTKKEA 733
Cdd:TIGR02168 608 vkfdpklrkalsyllggvLVVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggSAKTNSSILERRREieELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 734 LIQELQHKLNQKKEEVEQKKNEYNFKMRQLEHVMDSAAEDpqspktpphfQTHLAKLLETQEQEIEDGRASKTSLEHLVT 813
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ----------ISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 814 KLNEDREVKNAEILRMKEQLREMENLRLESQQLIEKnwlLQGQLDDIKRQKENSdqnhpdNQQLKNEQEESIKERLAKSK 893
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ---LKEELKALREALDEL------RAELTLLNEEAANLRERLES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 894 IVEEMLKMKADLEEVQSALYNKEMECLRMTDEVERTQTLESKAFQEKEQLRSKLEEMYEERERTSQEMEMLRKQVECLAE 973
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 578806387 974 ENGKLV-GHQNLHQKI-QYVVRLKKENVRLAEETEKLRAE 1011
Cdd:TIGR02168 909 KRSELRrELEELREKLaQLELRLEGLEVRIDNLQERLSEE 948
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
431-749 |
1.09e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 431 LKSEVHDLRVVLHSADKELSSVKLEyssfKTNQEKEFNKLSERHMHVQLQLDNLRLENEKLLESKACLQDSYDNLQEimk 510
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSE----LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE--- 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 511 fEIDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKL-----------SLQFEEDKENSSKEILKVLEAVRQEKQK 579
Cdd:TIGR02169 745 -DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlshsripeIQAELSKLEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 580 ETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTSVCEKTET-------IDTLKQELKDINC 652
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRlgdlkkeRDELEAQLRELER 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 653 KYNSALVDREESRVLIKKQEVDILDLKETLR-----LRILSEDIERDMLCEDLA----------HATEQLNMLT----EA 713
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSeiedpKGEDEEIPEEELSLEDVQaelqrveeeiRALEPVNMLAiqeyEE 983
|
330 340 350
....*....|....*....|....*....|....*.
gi 578806387 714 SKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEV 749
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
721-1022 |
1.85e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 721 LQSAQEELTKKEALIQELQHKLNQKKEEVEQ--KKNEYNFKMRQLEHVMDSAAEDpqspktpphfqtHLAKLLETQEQEI 798
Cdd:COG1196 181 LEATEENLERLEDILGELERQLEPLERQAEKaeRYRELKEELKELEAELLLLKLR------------ELEAELEELEAEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 799 EDGRASKTSLEHLVTKLNEDREVKNAEILRMKEQLREM-ENLRLESQQLIEKNWLLQGQLDDIKRQKENSDQNHPDNQQL 877
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAqAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 878 KNE----QEESIKERLAKSKIVEEMLKMKADLEEVQSALYNKEMECLRMTDEVERTQTLESKAFQEKEQLRSKLEEMYEE 953
Cdd:COG1196 329 EEEleelEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578806387 954 RERTSQEMEMLRKQVECLAEENGKLVghQNLHQKIQYVVRLKKENVRLAEETEKLRAENVFLKEKKRSE 1022
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELE--EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
348-650 |
5.74e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 5.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 348 EAISEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHH---STQMQE----LFSSERIDWTKQQEELLSQLNVLEKQ 420
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYqalLKEKREyegyELLKEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 421 LQETQTKNDFLKSEVHDLRVVLHSADKELS---------------SVKLEYSSFKTNQ---EKEFNKLSERHMHVQLQLD 482
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeeqlrvkekigELEAEIASLERSIaekERELEDAEERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 483 NLRLENEKLLES-------KACLQDSYDNLQEIMKF------EIDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNN 549
Cdd:TIGR02169 333 KLLAEIEELEREieeerkrRDKLTEEYAELKEELEDlraeleEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 550 KLSLQFEEDKENSSKEI------LKVLEAVRQEKQKETAKCEQQM----AKVQKLEESLLATEKVISSLEKSRDSDKKVV 619
Cdd:TIGR02169 413 EELQRLSEELADLNAAIagieakINELEEEKEDKALEIKKQEWKLeqlaADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
|
330 340 350
....*....|....*....|....*....|.
gi 578806387 620 ADLMNQIQELRTSVCEKTETIDTLKQELKDI 650
Cdd:TIGR02169 493 AEAEAQARASEERVRGGRAVEEVLKASIQGV 523
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
343-907 |
5.84e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 343 NEQAFEAISEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHHSTQMQELfsseridwTKQQEELLSQLNVLEKQLQ 422
Cdd:PRK03918 198 KEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESL--------EGSKRKLEEKIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 423 ETQTKNDFLKSEVHDLRVVLHSADK--ELSSVKLEYSSFKTNQEKEFNKLSERHMHVQLQLDNLrleneklleskaclqd 500
Cdd:PRK03918 270 ELKKEIEELEEKVKELKELKEKAEEyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL---------------- 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 501 sydnlqEIMKFEIDQLSRNLQNFKKENETLKSDLnnlmELLEAEKERNNKLSLQFEEDKENSSKEILKVLEAVRQEKQKE 580
Cdd:PRK03918 334 ------EEKEERLEELKKKLKELEKRLEELEERH----ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 581 TAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQiqelrtsvcEKTETIDTLKQELKDINCKYNSALVD 660
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE---------HRKELLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 661 REESRVLIKKQEVDILDLKETLRLRILSEDIE------RDMLCEDLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEAL 734
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELIKLKELAEQLKeleeklKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 735 IQELQhKLNQKKEEVEQKKNEYNFKMRQLEHVMDSAAEDPQSPKTPPHFQTHLAKlleTQEQEIEDGRASKTSLEHLVTK 814
Cdd:PRK03918 555 KKKLA-ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK---DAEKELEREEKELKKLEEELDK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 815 LNEDREVKNAEILRMKEQLREM------ENLRLESQQLIEKNWLLQGQLDDIKRQKENSDQNHPDNQQLKNEQEesikER 888
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELekkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE----ER 706
|
570
....*....|....*....
gi 578806387 889 LAKSKIVEEMLKMKADLEE 907
Cdd:PRK03918 707 EKAKKELEKLEKALERVEE 725
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
405-630 |
7.45e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 7.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 405 KQQEELLSQLNVLEKQLQETQTKNDFLKSEVHDLRVVLHSADKELSSVKLEYSsfktNQEKEFNKLSERHMHVQLQLDNL 484
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA----ALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 485 RLENEKLLeSKACLQDSYDNLQEIMKFE-IDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLSLQFEEdkenss 563
Cdd:COG4942 103 KEELAELL-RALYRLGRQPPLALLLSPEdFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE------ 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578806387 564 keilkvLEAVRQEKQKETAKCEQQMAKVQKLeesllatekvISSLEKSRDSDKKVVADLMNQIQELR 630
Cdd:COG4942 176 ------LEALLAELEEERAALEALKAERQKL----------LARLEKELAELAAELAELQQEAEELE 226
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
370-1013 |
8.88e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 370 EEEHKNLKLQQHVDKLEHHSTQMQELFSSERIDWTKQQEELLSQLNVLEKQLQETQTKNDFLKSEVHDLRVVLHSADKEL 449
Cdd:TIGR00618 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQ 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 450 SSVKLEySSFKTNQEKEFNKLSERHMHVQLQLDNLRLENEKLLESKACLQDS----YDNLQEIMKFEIDQLSRNLQNFKK 525
Cdd:TIGR00618 305 IEQQAQ-RIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIhirdAHEVATSIREISCQQHTLTQHIHT 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 526 ENETLKSDLNNLMELL-EAEKERNNKLSLQFEEDKENSSKEILKVLEAVRQEKQKETAKCEQQMAKVQKLEESLLATEKV 604
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCkELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 605 ISSLEKSRDSDKKVVADLMNQIQELRTSVCEKTETIDTLKQELKDINCKYNSALVDREESRVLIKKQEvDILDLKETLRL 684
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQ-RGEQTYAQLET 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 685 RILSEDIERDMLCEDLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEYNFKMRQLE 764
Cdd:TIGR00618 543 SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 765 HVMDS---AAEDPQSPKTPPHFQTHLAKLLET---QEQEIEDGRASKTSLEHLVTKLNEDREVKN--AEILRMKEQLREM 836
Cdd:TIGR00618 623 PEQDLqdvRLHLQQCSQELALKLTALHALQLTltqERVREHALSIRVLPKELLASRQLALQKMQSekEQLTYWKEMLAQC 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 837 ENLRLESQQLIEKNWLLQGQLDDIKR-QKENSDQNHPDNQQLKNEQEESIKERLAKSKIVEEMLKMKADLEEVQSALYNK 915
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSsLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSH 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 916 EMECLRMTDEVERTQTLESKafQEKEQLRSKLEEMYEERERTSQEMEMLRKQVECLAEENGKLVgHQNLHQKIQYVVRLK 995
Cdd:TIGR00618 783 LAAEIQFFNRLREEDTHLLK--TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATL-GEITHQLLKYEECSK 859
|
650 660
....*....|....*....|....
gi 578806387 996 ------KENVRLAEETEKLRAENV 1013
Cdd:TIGR00618 860 qlaqltQEQAKIIQLSDKLNGINQ 883
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-837 |
9.32e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 512 EIDQLSRNLQNFKKENETLKSDLNnlmellEAEKERNNKLSLQfeEDKENSSKEILKVLEAVRQEKQKETAKCEQQMAKV 591
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELR------RIENRLDELSQEL--SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 592 QKLEESLLATEKvissleksrdsdkkvvadlmnQIQELRTSVCEKTETIDTLKQELKDINCKYNsalvdreESRVLIKKQ 671
Cdd:TIGR02169 747 SSLEQEIENVKS---------------------ELKELEARIEELEEDLHKLEEALNDLEARLS-------HSRIPEIQA 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 672 EVDILDlKETLRLRILSEDIERDmlcedlahaTEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQ 751
Cdd:TIGR02169 799 ELSKLE-EEVSRIEARLREIEQK---------LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 752 KKNEYNFKMRQLEHVMDSAAEDpqspktpphfQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMKE 831
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKE----------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
|
....*.
gi 578806387 832 QLREME 837
Cdd:TIGR02169 939 PKGEDE 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
507-974 |
9.37e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 9.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 507 EIMKFEIDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLSLQFEEDKENSSKEILKVLEAVRQEKQKETAKCEQ 586
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 587 QMA-KVQKLEESLLATEKVISSLEKSRDSDK-KVVADLMNQIQELRTSVCEKTETIDTLKQELKDINCKYNSALVDREES 664
Cdd:PTZ00121 1405 KKAdELKKAAAAKKKADEAKKKAEEKKKADEaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 665 RVLIKKQEVDILDLKETLRLRILSEDIERDMLCEDLAHATEQLNMLTEASKKHSGllqSAQEELTKKEALIQELQHKLNQ 744
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA---KKAEEKKKADELKKAEELKKAE 1561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 745 KKEEVEQKKNE---YNFKMRQLEhVMDSAAEDPQSPKTPPHFQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREV 821
Cdd:PTZ00121 1562 EKKKAEEAKKAeedKNMALRKAE-EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 822 KNAEILRMKEQLR-EMENLRLESQQLIEKNWLLQGQLDDIKRQKENSDQNHpdnQQLKNEQEESIKERLAKSKIVEEmlK 900
Cdd:PTZ00121 1641 KEAEEKKKAEELKkAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA---EALKKEAEEAKKAEELKKKEAEE--K 1715
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578806387 901 MKADLEEVQSALYNKEMECLRMTDEVERTQTLESKafqEKEQLRSKLEEMYEERERTSQEmemLRKQVECLAEE 974
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK---KDEEEKKKIAHLKKEEEKKAEE---IRKEKEAVIEE 1783
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
348-912 |
1.03e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 348 EAISEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHHSTQMQELFSSERIdwtkqqeeLLSQLNVLEKQLQETQTK 427
Cdd:PRK01156 162 NSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSI--------TLKEIERLSIEYNNAMDD 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 428 NDFLKSEVHDLRVVLHSADKELSSVKLEYSSFKTNQEK--EFNKLSERHMhvqlqldnlRLENEKLLESKACLQDSYD-- 503
Cdd:PRK01156 234 YNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKnnYYKELEERHM---------KIINDPVYKNRNYINDYFKyk 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 504 ----NLQEIMKFEIDQLSRNLQNFKK------------ENETLKSDLNNLMELLEAEKERNNKLSLQFEEDK---ENSSK 564
Cdd:PRK01156 305 ndieNKKQILSNIDAEINKYHAIIKKlsvlqkdyndyiKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKkkiEEYSK 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 565 EILKVLEAVRQEKQKETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQEL----RTSVCEKTETI 640
Cdd:PRK01156 385 NIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLngqsVCPVCGTTLGE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 641 DTLKQELKDINCKYNSALVDREESRVLIKKQEVDILDLKETLRlRILSEDIER----DMLCEDLAHATE----QLNMLTE 712
Cdd:PRK01156 465 EKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKE-YLESEEINKsineYNKIESARADLEdikiKINELKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 713 ASKK-----------HSGLLQSAQEELTKKEALIQELQHKLNQK-KEEVEQKKNEYNFKMRQLEhvmdSAAEDPQS--PK 778
Cdd:PRK01156 544 KHDKyeeiknrykslKLEDLDSKRTSWLNALAVISLIDIETNRSrSNEIKKQLNDLESRLQEIE----IGFPDDKSyiDK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 779 TPPHFQTHlAKLLETQEQEIEDGRASKTSLEHLVTKLNEdrevknaEILRMKEQLREMENLRLESQQLIEKNWLLQGQLD 858
Cdd:PRK01156 620 SIREIENE-ANNLNNKYNEIQENKILIEKLRGKIDNYKK-------QIAEIDSIIPDLKEITSRINDIEDNLKKSRKALD 691
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 578806387 859 DIKRQKENSDQNHPDNQQLKNEQEESIKERLAKSKIVEEMLKMKADLEEVQSAL 912
Cdd:PRK01156 692 DAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| HMMR_C |
pfam15908 |
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of ... |
905-1011 |
1.06e-03 |
|
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464934 [Multi-domain] Cd Length: 157 Bit Score: 40.67 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 905 LEEVQSALYNKEMECLRMTDEVERTQTLESKAFQEKEQLRSKLEEMYEERERTSQEMEMLRKQVECLAEENGKLVGHQNL 984
Cdd:pfam15908 4 LEMEEQRKARLENTVDELTEEIKKWRNLYEELYNKTKPFQEQLDAFEAEKNALLNENGAAQEELNKLSDAYAKLLGHQNQ 83
|
90 100
....*....|....*....|....*..
gi 578806387 985 HQKIQYVVRLKKENVRLAEETEKLRAE 1011
Cdd:pfam15908 84 KQKIKHVVKLKEENTQLKQEVSKLRSQ 110
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
41-576 |
1.12e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 41 TRDKKKTNYMEYFQEAMLFFKKSEQEKKSLIEKVTQLEDLTLKKEKFI-------QSNKMI-VKFREDQIIRLEKLHKES 112
Cdd:COG5022 861 FSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIielkkslSSDLIEnLEFKTELIARLKKLLNNI 940
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 113 RGGFLPE---EQDRLLSELRNEIQTLREQIEHHPRVAKYA-------------MENH-----SLREENRRLRllEPVKRA 171
Cdd:COG5022 941 DLEEGPSieyVKLPELNKLHEVESKLKETSEEYEDLLKKStilvregnkanseLKNFkkelaELSKQYGALQ--ESTKQL 1018
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 172 QEMDAQtIAKLEKAFSEISGMEKSDKNQQGFS-PKAQKEPCLFANTEKLKAQLLQIQTELNNSKQEYE----EFKELTRK 246
Cdd:COG5022 1019 KELPVE-VAELQSASKIISSESTELSILKPLQkLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQlestENLLKTIN 1097
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 247 RQLELESELQSLQKANLNLENLLEATKACKRQEVSQLNKIHAETLKIITTPTKAYQL---HSRPVPKLSPEMGSFGSLYT 323
Cdd:COG5022 1098 VKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLeldGLFWEANLEALPSPPPFAAL 1177
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 324 QNSSILDNDILNEPvppemneqaFEAISEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHHSTQMQEL--FSSERI 401
Cdd:COG5022 1178 SEKRLYQSALYDEK---------SKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLkgFNNLNK 1248
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 402 DWTKQQ----EELLSQLNVLEKQLQETQTKNDFLKSEVHDLRVVLHSADKELSSVKLEYSSFKTNQEKEFNKLSERHMHV 477
Cdd:COG5022 1249 KFDTPAsmsnEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCR 1328
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 478 QLQLDNLRLENEKLLESKACLQDSYDNLQEIMkfEIDQLSRNLQNFkkENETLKSDLNNLMELLEAEKERNNKLSLQFEE 557
Cdd:COG5022 1329 EFEISDVDEELEELIQAVKVLQLLKDDLNKLD--ELLDACYSLNPA--EIQNLKSRYDPADKENNLPKEILKKIEALLIK 1404
|
570
....*....|....*....
gi 578806387 558 DKENSSKEILKVLEAVRQE 576
Cdd:COG5022 1405 QELQLSLEGKDETEVHLSE 1423
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
620-773 |
1.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 620 ADLMNQIQELRTSVCEKTETIDTLKQELKDINCKYNSALVDREESRVLIKKQEVDILDLKETLRLR--ILSEDIER---- 693
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERreELGERARAlyrs 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 694 -------DMLCE-----DLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEYNFKMR 761
Cdd:COG3883 99 ggsvsylDVLLGsesfsDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQA 178
|
170
....*....|..
gi 578806387 762 QLEHVMDSAAED 773
Cdd:COG3883 179 EQEALLAQLSAE 190
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
214-557 |
1.19e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 214 ANTEKLKAQLLQIQTELNNSKQEYEEFKELTRKRQLELESELQSLQKANLNLENL------LEATKACKRQEVSQLNKIH 287
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLeaeveqLEERIAQLSKELTELEAEI 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 288 AETLKIITTPTKAYQLHSRPVPKLSPEMGSFGSLYTQNSSILD--NDILNEpvppemNEQAFEAISEELRTVQEQMSALQ 365
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDelRAELTL------LNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 366 AKLDEEEHKNLKLQQHVDKLEHHSTQMQEL---FSSERIDWTKQQEELLSQLNVLEKQLQETQTKNDFLKSEVHDLRVVL 442
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELieeLESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 443 HSADKELSSVKLEYSSFKTNQEKEFNKLSERHmhvqlqldnlRLENEKLLESKACLQDSYDNLQEimkfEIDQLSRNLQN 522
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQERLSEEY----------SLTLEEAEALENKIEDDEEEARR----RLKRLENKIKE 983
|
330 340 350
....*....|....*....|....*....|....*
gi 578806387 523 FKKENETlksdlnnLMELLEAEKERNNKLSLQFEE 557
Cdd:TIGR02168 984 LGPVNLA-------AIEEYEELKERYDFLTAQKED 1011
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
567-1004 |
1.67e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 567 LKVLEAVRQEKQKETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVA--DLMNQIQELRTSVCEKTETIDTLK 644
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 645 QELKDinckYNSALVDREESRVLIKKQEVDILDLKETLRLRILsedierdmlcEDLAHATEQLNMLTEASKKHSGLLQSA 724
Cdd:COG4717 153 ERLEE----LRELEEELEELEAELAELQEELEELLEQLSLATE----------EELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 725 QEELTKKEALIQELQHKLNqkKEEVEQKKNEYNFKMRQLEHVMDSAAEDPQSPKTPPHFQTHLAKLLETQEQEIEDGRAS 804
Cdd:COG4717 219 QEELEELEEELEQLENELE--AAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 805 KTSLEHLVTKLNEDREVKNAEILRMKEQLREMENLRLESQQLIEKNWL-------LQGQLDDIKRQKENSDQNHPDNQQL 877
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDrieelqeLLREAEELEEELQLEELEQEIAALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 878 KNEQEESIKERLAKSKIVEEMLKMKADLEEVQSALYNKEMEclrmtdevertqTLESKAFQEKEQLRSKLEEMYEERERT 957
Cdd:COG4717 377 AEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGE------------LEELLEALDEEELEEELEELEEELEEL 444
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 578806387 958 SQEMEMLRKQVECLAEENGKLVGHQNLHQKIQYVVRLKKENVRLAEE 1004
Cdd:COG4717 445 EEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
189-893 |
1.68e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 189 ISGMEKSDKNQQGFSPKAQKEPCLFANTEKLKAQLLQIQTELNNSKQEYEEFKELTRKRQLELESELQSLQKANLNLENL 268
Cdd:TIGR00618 169 LMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQK 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 269 LEatkacKRQEVSQLNKIHAETLKIITTPTKAYQLHSRPVPKLspemgsfgslytqnssildnDILNEPVPPEMNEQAFE 348
Cdd:TIGR00618 249 RE-----AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERI--------------------NRARKAAPLAAHIKAVT 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 349 AISEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHHSTQMQELFSSErIDWTKQQEELLSQLNVLEKQLQETQtkn 428
Cdd:TIGR00618 304 QIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE-IHIRDAHEVATSIREISCQQHTLTQ--- 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 429 dflksEVHDLRVVLHSADKELSSVKLEYSSFKTNQEKEFNKLSERHMhVQLQLDNLRLENEKLLESKACLQDSYDNLQEI 508
Cdd:TIGR00618 380 -----HIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRD-LQGQLAHAKKQQELQQRYAELCAAAITCTAQC 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 509 MKFEIDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLSLQFEEDKENSSKEILKVLEAVRQ-EKQKETAKCEQQ 587
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIdNPGPLTRRMQRG 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 588 MAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTSVCEKTETIDTLKQELKDINCKYNSALVDREESRVL 667
Cdd:TIGR00618 534 EQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 668 IKKQEVDILDLKETLRLRILSEDIERDMLCEDLAHATEQLNMLTEASKKHSGLLQSAQEE-LTKKEALIQELQHKLNQKK 746
Cdd:TIGR00618 614 QHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKElLASRQLALQKMQSEKEQLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 747 EEVEQKKNEYNFKMRQLEHVMDSAAEDPQSPKTPPHFQTHLAKLLETQEQEIEDGRA-SKTSLEHLVtklnEDREVKNAE 825
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHqARTVLKART----EAHFNNNEE 769
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578806387 826 ILRMKEQLREMENLRLESQQLIEKNWLLQGQLDDIKRQKEnsdQNHPDNQQLKNEQEESIKERLAKSK 893
Cdd:TIGR00618 770 VTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG---QEIPSDEDILNLQCETLVQEEEQFL 834
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
417-632 |
2.20e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 417 LEKQLQETQTKNDFLKSEVHDLRVVLHSADKELSSVKLEYSSFKTNQEKEFnklserhmhVQLQLDNLRLENEKLLESKA 496
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKL---------LLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 497 CLQDSYDNLQEIMKFEIDQLSRNLQNfkKENETLKSDLNNLMELLEAEKERNN-------KLSLQFEEDKENSSKEILKV 569
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQS--PVIQQLRAQLAELEAELAELSARYTpnhpdviALRAQIAALRAQLQQEAQRI 314
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578806387 570 LEAVRQEKQKETAKCEQQMAKVQKLEE---SLLATEKVISSLEKSRDSDKKVVADLMNQIQELRTS 632
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEArlaELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
348-755 |
3.02e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 348 EAISEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHHST---QMQELFSSERIDWTKQQEELLSQLNVLEKQLQET 424
Cdd:pfam10174 292 DQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTakeQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 425 QTKNDFLKSEVHDLRVVLHSADKELSSVKLEYSSFKT---NQEKEFNKLSERHMHVQLQLDNLRLENEKLLESKACLQDS 501
Cdd:pfam10174 372 TEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEqlrDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERI 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 502 YDNLQEIMKFEIDQLSRNLQNFKKENETLKSDLNNLM-ELLEAEkerNNKLSLQFEEDKENSS----KEILKVLEAVRQE 576
Cdd:pfam10174 452 IERLKEQREREDRERLEELESLKKENKDLKEKVSALQpELTEKE---SSLIDLKEHASSLASSglkkDSKLKSLEIAVEQ 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 577 KQKETAKCEQQMAKVQKLEESLLATEKV---ISSLEKS----RDSDKKVVAD---LMNQIQELRTSVCEKTETIDTLKQE 646
Cdd:pfam10174 529 KKEECSKLENQLKKAHNAEEAVRTNPEIndrIRLLEQEvaryKEESGKAQAEverLLGILREVENEKNDKDKKIAELESL 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 647 LKDINCKYNSALVDREESRVLIKKQEVDILDlkETLRLRILSEDIERDMLCEDLAHATEQLNMLTEASKKHsglLQSAQE 726
Cdd:pfam10174 609 TLRQMKEQNKKVANIKHGQQEMKKKGAQLLE--EARRREDNLADNSQQLQLEELMGALEKTRQELDATKAR---LSSTQQ 683
|
410 420
....*....|....*....|....*....
gi 578806387 727 ELTKKEALIQELQHKLNQKKEEVEQKKNE 755
Cdd:pfam10174 684 SLAEKDGHLTNLRAERRKQLEEILEMKQE 712
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
505-772 |
3.58e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 505 LQEIMKFEIDQLSRNLQNFKKEN-ETLKSDLNNLMELLEAEKERNNKLSLQFEEDKENSSKEILKVLEAvrqekqketak 583
Cdd:PRK05771 25 LHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEE----------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 584 ceqqmaKVQKLEESLLATEKVISSLEksrdSDKKvvaDLMNQIQELrtsvcEKTETIDTlkqelkDINCKYNSALVDREE 663
Cdd:PRK05771 94 ------ELEKIEKEIKELEEEISELE----NEIK---ELEQEIERL-----EPWGNFDL------DLSLLLGFKYVSVFV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 664 SRVLIKKQEVDILDLKETLrLRILSEDIERDMLC-----EDLAHATEQLNMLtEASKKHSGLLQSAQEELTKKEALIQEL 738
Cdd:PRK05771 150 GTVPEDKLEELKLESDVEN-VEYISTDKGYVYVVvvvlkELSDEVEEELKKL-GFERLELEEEGTPSELIREIKEELEEI 227
|
250 260 270
....*....|....*....|....*....|....
gi 578806387 739 QHKLNQKKEEVEQKKNEYNFKMRQLEHVMDSAAE 772
Cdd:PRK05771 228 EKERESLLEELKELAKKYLEELLALYEYLEIELE 261
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
718-974 |
4.11e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 718 SGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEYNFKMRQLEHVMDSAAEdpqspktpphfqthLAKLLETQEQE 797
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA--------------LARRIRALEQE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 798 IEDGRASKTSLEHLVTKLNEDREVKNAEIlrmKEQLREMENLrleSQQLIEKNWLLQGQLDDIKRQKENSDQNHPDNQQL 877
Cdd:COG4942 78 LAALEAELAELEKEIAELRAELEAQKEEL---AELLRALYRL---GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 878 KNEQEESIKERLAKSKIVEEMLKMKADLEEVQSALYNkemeclRMTDEVERTQTLESKAFQEKEQLRSKLEEMYEERERT 957
Cdd:COG4942 152 AEELRADLAELAALRAELEAERAELEALLAELEEERA------ALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
250
....*....|....*..
gi 578806387 958 SQEMEMLRKQVECLAEE 974
Cdd:COG4942 226 EALIARLEAEAAAAAER 242
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
514-1020 |
4.78e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 4.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 514 DQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLSLQFEEDKENSSKEILKVLEAvrQEKQKETAKCEQQMAKVQK 593
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA--KKKADAAKKKAEEKKKADE 1395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 594 LEESLLATEKVISSLEKSRDSDKKVvadlmnqiQELRTSVCEKTETiDTLKQELKDINcKYNSALVDREESRvlikKQEV 673
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKA--------DEAKKKAEEKKKA-DEAKKKAEEAK-KADEAKKKAEEAK----KAEE 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 674 DILDLKETLRLRILSEDIERDMLCEDLAHATEQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKK 753
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 754 NEYNFK---MRQLEHVMDSAAEDPQSPKTPPHFQTHLAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREVKNAEILRMK 830
Cdd:PTZ00121 1542 AEEKKKadeLKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 831 -EQLREMENLRLESQQLIEKNWLLQGQLDDIKRQKEnsdQNHPDNQQLKNEQEESIKErlakskiVEEMLKMKADLEEVQ 909
Cdd:PTZ00121 1622 aEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE---ENKIKAAEEAKKAEEDKKK-------AEEAKKAEEDEKKAA 1691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 910 SALYNKEMEclrmTDEVERTQTLESKAFQEKEQLRSKleemYEERERTSQEMEMLRKQVECLAEENGKLVGHQNLHQKIQ 989
Cdd:PTZ00121 1692 EALKKEAEE----AKKAEELKKKEAEEKKKAEELKKA----EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
|
490 500 510
....*....|....*....|....*....|.
gi 578806387 990 YVVRLKKENVRlaEETEKLRAENVFLKEKKR 1020
Cdd:PTZ00121 1764 KEEEKKAEEIR--KEKEAVIEEELDEEDEKR 1792
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
625-835 |
4.79e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 625 QIQELRTSVCEKTETIDTLKQELKDINCKYNSAlvdREESRVLIKKQEVDildlketlrlrilSEDIERDMLCEDLAHAT 704
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDAL---QERREALQRLAEYS-------------WDEIDVASAEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 705 EQLNMLTEASKKhsglLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEYNFKMRQLEHVMDSAAEDPQSPKTPPHFQ 784
Cdd:COG4913 675 AELERLDASSDD----LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 578806387 785 thlakLLETQEQEIEDGRASKtslehLVTKLNEDREVKNAEILRMKEQLRE 835
Cdd:COG4913 751 -----LEERFAAALGDAVERE-----LRENLEERIDALRARLNRAEEELER 791
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
463-962 |
6.75e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 463 QEKEFNKLSERHMHVQLQLDNLRLENEKLLESKACLQDSYDNLQEIMKfEIDQLSRNLQNFKKENETLksdLNNLMELLE 542
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCA-EAEEMRARLAARKQELEEI---LHELESRLE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 543 AEKERNNKLSLQFEEDKENSS--KEILKVLEAVRQEKQKETAKCEqqmAKVQKLEESLLATEKVISSLEKSRDSDKKVVA 620
Cdd:pfam01576 86 EEEERSQQLQNEKKKMQQHIQdlEEQLDEEEAARQKLQLEKVTTE---AKIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 621 DLMNQIQELRtsvcEKTETIDTLKQelkdincKYNSALVDREESRvliKKQEVDILDLKETLRLRILSEDIERDMLCEDL 700
Cdd:pfam01576 163 EFTSNLAEEE----EKAKSLSKLKN-------KHEAMISDLEERL---KKEEKGRQELEKAKRKLEGESTDLQEQIAELQ 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 701 AHATEQLNMLTEASKKHSGLLQSAQEELTKKEAL---IQELQHKLNQKKEEVEQKKNEYNFKMRQ--------------L 763
Cdd:pfam01576 229 AQIAELRAQLAKKEEELQAALARLEEETAQKNNAlkkIRELEAQISELQEDLESERAARNKAEKQrrdlgeelealkteL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 764 EHVMDSAAEDPQSPKTPPHFQTHLAKLLEtqeqeiEDGRASKTSLEHLVTKLNEDREVKNAEILRMKeqlREMENLRLES 843
Cdd:pfam01576 309 EDTLDTTAAQQELRSKREQEVTELKKALE------EETRSHEAQLQEMRQKHTQALEELTEQLEQAK---RNKANLEKAK 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 844 QQLIEKNWLLQGQLDDIKRQKENSDQNHPD-NQQLKNEQEESIKERLAKSKIVEEMLKMKADLEEVQSALYNKEMECLRM 922
Cdd:pfam01576 380 QALESENAELQAELRTLQQAKQDSEHKRKKlEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKL 459
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 578806387 923 TDEV-------ERTQTLESKAFQEKEQLRSKLEEMYEERERTSQEME 962
Cdd:pfam01576 460 SKDVsslesqlQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLE 506
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
787-1023 |
6.87e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 787 LAKLLETQEQEIEDGRASKTSLEHLVTKLNEDREV---KNAEILRMKEQLREMENLRLESQQLIeknwLLQGQLDDIKR- 862
Cdd:pfam17380 308 KAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMameRERELERIRQEERKRELERIRQEEIA----MEISRMRELERl 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 863 QKENSDQNHPDNQQLKNEQEESIKERLAKSKIVEEMLKMKADLEEVQSAlynKEMECLRMTDEVERTQTLESKAFQEKEQ 942
Cdd:pfam17380 384 QMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEA---RQREVRRLEEERAREMERVRLEEQERQQ 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 943 LRSKLEEMYEERERTSQEMEMlRKQVECLAEENGKLVGHQNLHQKIQYVvrLKKENVRLAEETEKLRAENVFLKEKKRSE 1022
Cdd:pfam17380 461 QVERLRQQEEERKRKKLELEK-EKRDRKRAEEQRRKILEKELEERKQAM--IEEERKRKLLEKEMEERQKAIYEEERRRE 537
|
.
gi 578806387 1023 S 1023
Cdd:pfam17380 538 A 538
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
570-820 |
7.76e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 570 LEAVRQEKQK---ETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKV------VADLMNQIQELRTSVCEktetI 640
Cdd:COG4913 612 LAALEAELAEleeELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVasaereIAELEAELERLDASSDD----L 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 641 DTLKQELKDINCKYNSALVDREESRVLIKKQEVDILDLKETL-RLRILSEDIERDMLCEDLAHATEQLNMLTEAskkhsG 719
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdELQDRLEAAEDLARLELRALLEERFAAALGD-----A 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 720 LLQSAQEELTKKealIQELQHKLNQKKEEVEQKKNEYNFKMRQLEHVMDSAAEDpqspktPPHFQTHLAKL----LETQE 795
Cdd:COG4913 763 VERELRENLEER---IDALRARLNRAEEELERAMRAFNREWPAETADLDADLES------LPEYLALLDRLeedgLPEYE 833
|
250 260
....*....|....*....|....*..
gi 578806387 796 QEIED--GRASKTSLEHLVTKLNEDRE 820
Cdd:COG4913 834 ERFKEllNENSIEFVADLLSKLRRAIR 860
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
721-1021 |
8.88e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 721 LQSAQEELTKKEALIQELQHKLNQKKEEVEqKKNEYNFKMRQLEHVMDSAaedpqspktpphfqthLAKLLETQEQEIED 800
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAE-KAERYKELKAELRELELAL----------------LVLRLEELREELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 801 GRASKTSLEHLVTKLNEDREVKNAEILRMKEQLREMENlrlESQQLIEKNWLLQGQLDDIKRQKENSDQNHPDNQQLKNE 880
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 881 QEESIKERLAKSKIVEEML-KMKADLEEVQSALYNKEMECLRMTDEVERTQTLESKAFQEKEQLRSKLEEMYE------- 952
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELqiaslnn 400
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578806387 953 ERERTSQEMEMLRKQVECLAEENGKLVGHQNLHQKIQYVVRLKKENVRLAEETEKLRAENVFLKEKKRS 1021
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
498-971 |
8.99e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 8.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 498 LQDSYDNLQEIMKfEIDQLSRNLQNFKKENETLKSDLNNLMELLEAEKERNNKLSL---QFEEDKENSSKEiLKVLEAVR 574
Cdd:PRK03918 160 YENAYKNLGEVIK-EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSelpELREELEKLEKE-VKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 575 QEKQKETAKCEQQMAKVQKLEESLLATEKVISSLEKSRDSDKKVVADLmNQIQELRTSVCEKTETIDTLKQELKDINCKY 654
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 655 NSALVDREESRVLIKKQEVDILDLKETLR-----LRILSEDIERDMLCEDLAHATEQLNML-TEASKKHSGLLQSAQEEL 728
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKklkelEKRLEELEERHELYEEAKAKKEELERLkKRLTGLTPEKLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 729 TKKEALIQELQHKLNQKKEEVEQKKNEYNFKMRQLEhvmdsAAEDPQSPKTPPHFQTHLAKLLETQEQEIEDGRASKTSL 808
Cdd:PRK03918 397 EKAKEEIEEEISKITARIGELKKEIKELKKAIEELK-----KAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEI 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 809 EHLVTKL-NEDREVKNA-----EILRMKEQLREMENLRLESQQL----IEKNW----LLQGQLDDIKRQKENSDQNHPDN 874
Cdd:PRK03918 472 EEKERKLrKELRELEKVlkkesELIKLKELAEQLKELEEKLKKYnleeLEKKAeeyeKLKEKLIKLKGEIKSLKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578806387 875 QQLKNEQEE------SIKERLAK--SKIVEEMLKMKADLEEVQSAL---YNKEMECLRMTDEVERTQtleskafQEKEQL 943
Cdd:PRK03918 552 EELKKKLAElekkldELEEELAEllKELEELGFESVEELEERLKELepfYNEYLELKDAEKELEREE-------KELKKL 624
|
490 500
....*....|....*....|....*...
gi 578806387 944 RSKLEEMYEERERTSQEMEMLRKQVECL 971
Cdd:PRK03918 625 EEELDKAFEELAETEKRLEELRKELEEL 652
|
|
| |
