|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
459-713 |
2.61e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 123.69 E-value: 2.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 459 LYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEAL 538
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 539 DCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPC 618
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 619 NIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLC 698
Cdd:COG2956 177 CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
|
250
....*....|....*
gi 578825020 699 TDLGLKDAQEYARKL 713
Cdd:COG2956 257 RKEGLEAALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
421-679 |
4.33e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 123.30 E-value: 4.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 421 KAVTYLRQKDYNQAVEILKVLEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDY 500
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 501 EKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVS 580
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 581 VIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWqLMV 660
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LAL 251
|
250
....*....|....*....
gi 578825020 661 ASCFRRSGNYQKALDTYKD 679
Cdd:COG2956 252 ADLLERKEGLEAALALLER 270
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
480-646 |
6.99e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.10 E-value: 6.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 480 DRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIA 559
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 560 NIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKA 639
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
....*..
gi 578825020 640 IQYFERA 646
Cdd:COG0457 164 LELLEKL 170
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
452-609 |
4.60e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 104.70 E-value: 4.60e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 452 AATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKL 531
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578825020 532 NRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYY 609
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
511-678 |
3.96e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 99.31 E-value: 3.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 511 LRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLS 590
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 591 KLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNY 670
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
....*...
gi 578825020 671 QKALDTYK 678
Cdd:COG0457 161 EEALELLE 168
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
522-717 |
6.39e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 96.34 E-value: 6.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 522 YNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGD 601
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 602 KSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTH 681
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190
....*....|....*....|....*....|....*..
gi 578825020 682 RKFPENVECLRFLVRLCTDLG-LKDAQEYARKLKRLE 717
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGdYEEAIAALERALEQD 208
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
451-673 |
8.63e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.21 E-value: 8.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 451 AAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEK 530
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 531 LNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYY 610
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578825020 611 ESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKA 673
Cdd:COG3914 171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
449-585 |
1.14e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 80.24 E-value: 1.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 449 KSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTY 528
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 578825020 529 EKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTD 585
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
496-650 |
5.07e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 85.43 E-value: 5.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 496 ANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWL 575
Cdd:COG3914 90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578825020 576 MQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQ 650
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
213-721 |
1.16e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 84.75 E-value: 1.16e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 213 YAEALNTYQVIVKNKMFSNAGILkmNMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMRIKIMqnigVTFiQAGQYSDAI 292
Cdd:TIGR02917 209 IELALAAYRKAIALRPNNIAVLL--ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL----VDF-QKKNYEDAR 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 293 NSYEHIMSMAPN-LKAGYNLTICYFAIGDREKMKKAFQKLItvpleidedKYISPSDDPHTNLVTEAIKN----DHLRQM 367
Cdd:TIGR02917 282 ETLQDALKSAPEyLPALLLAGASEYQLGNLEQAYQYLNQIL---------KYAPNSHQARRLLASIQLRLgrvdEAIATL 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 368 ERerkamAEKYIMTSAKLIAPVIETSFAAG-YDwcvevvKASQYVELANDLEIN-------KAVTYLRQKDYNQAVEILK 439
Cdd:TIGR02917 353 SP-----ALGLDPDDPAALSLLGEAYLALGdFE------KAAEYLAKATELDPEnaaartqLGISKLSQGDPSEAIADLE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 440 VLEKKDSRVKSAAAtnLSALYYM-GKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCT 518
Cdd:TIGR02917 422 TAAQLDPELGRADL--LLILSYLrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 519 EALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDR 598
Cdd:TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 599 EGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYK 678
Cdd:TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 578825020 679 DTHRKFPENVECLRFLVRLctDLGLKDAQEYARKLKRLEKMKE 721
Cdd:TIGR02917 660 RALELKPDNTEAQIGLAQL--LLAAKRTESAKKIAKSLQKQHP 700
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
485-617 |
1.88e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.77 E-value: 1.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 485 AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYEL 564
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 578825020 565 MENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFP 617
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
552-687 |
6.05e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 75.23 E-value: 6.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 552 AEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYI 631
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 578825020 632 DTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPEN 687
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
502-609 |
1.01e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.27 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 502 KAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSV 581
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*...
gi 578825020 582 IPTDPQVLSKLGELYDREGDKSQAFQYY 609
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAW 108
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
203-712 |
1.18e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.67 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 203 LASQYSVNEMYAEALNTYQVIVKNKMfSNAGILKMnMGNIYLKQRNYSKAIKFyrmaLDQVPSVNKQMRIKIMQnIGVTF 282
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDP-DDPAALSL-LGEAYLALGDFEKAAEY----LAKATELDPENAAARTQ-LGISK 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 283 IQAGQYSDAINSYEHIMSMAPNLK-AGYNLTICYFAIGDREKMKKAFQKLITvpleidedkyiSPSDDPHTNLVTEAIkn 361
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGrADLLLILSYLRSGQFDKALAAAKKLEK-----------KQPDNASLHNLLGAI-- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 362 dhlRQMERErKAMAEKYIMTSAKlIAPVIETSFA--AGYDWCVE-VVKASQYVE--LANDLEINKAVT-----YLRQKDY 431
Cdd:TIGR02917 475 ---YLGKGD-LAKAREAFEKALS-IEPDFFPAAAnlARIDIQEGnPDDAIQRFEkvLTIDPKNLRAILalaglYLRTGNE 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 432 NQAVEILKVLEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEAL 511
Cdd:TIGR02917 550 EEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 512 RNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSK 591
Cdd:TIGR02917 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 592 LGELYDREGDKSQAFQYYYESYRYFPCNIEVIEwLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQ 671
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 578825020 672 KALDTYKDTHRKFPENVECLRFLVRLCTDLGLKDAQEYARK 712
Cdd:TIGR02917 788 KAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAER 828
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
201-577 |
1.82e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.46 E-value: 1.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 201 FNLASQYSVNEMYAEALNTYQVIVKNKmfSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGV 280
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELD--PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD-----RAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 281 TFIQAGQYSDAINSYEHIMSMAPNLkagynlticyfaigdrekmKKAFQKLITVpleidedkyispsddphtnlvteaik 360
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDD-------------------AEALRLLAEI-------------------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 361 ndhlrqmererkamaekyimtsakliapvietsfaagydwcvevvkasqyvelandleinkavtYLRQKDYNQAVEILKV 440
Cdd:COG2956 120 ----------------------------------------------------------------YEQEGDWEKAIEVLER 135
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 441 LEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEA 520
Cdd:COG2956 136 LLKLGPE-NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 578825020 521 LYNIGLTYEKLNRLDEALDcFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQ 577
Cdd:COG2956 215 LPRLAELYEKLGDPEEALE-LLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
420-577 |
1.19e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 74.66 E-value: 1.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 420 NKAVTYLRQKDYNQAVEIL-KVLEKKDSRVksAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANG 498
Cdd:COG0457 47 NLGLAYLRLGRYEEALADYeQALELDPDDA--EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578825020 499 DYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQ 577
Cdd:COG0457 125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
515-653 |
1.38e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 68.68 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 515 SSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGE 594
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 578825020 595 LYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQ 653
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
484-718 |
2.08e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 2.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 484 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAI---------LRNSAEV 554
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaaaaaaaLLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 555 LYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQ 634
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 635 FWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVR-LCTDLGLKDAQEYARKL 713
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFaLRQACDWEVYDRFEELL 240
|
....*
gi 578825020 714 KRLEK 718
Cdd:COG3914 241 AALAR 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
239-687 |
1.28e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.57 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 239 MGNIYLKQRNYSKAIKFYRMALDQVPSVNKQM----RIKIMQnigvtfiqaGQYSDAINSYEHIMSMAPNLKAGYN--LT 312
Cdd:TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLGYPKNQVLpllaRAYLLQ---------GKFQQVLDELPGKTLLDDEGAAELLalRG 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 313 ICYFAIGDREKMKKAFQKlitvPLEIDEDKyispsddphtnlvTEAikndhlrQMERERKAMAEKYIMTSAKLIAPVIET 392
Cdd:TIGR02917 133 LAYLGLGQLELAQKSYEQ----ALAIDPRS-------------LYA-------KLGLAQLALAENRFDEARALIDEVLTA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 393 SFAAGYDWCV--EVVKASQYVELANDleinkavtylrqkDYNQAVEilkvLEKKDSRVKSAAATNLSALyymgKDFAQAS 470
Cdd:TIGR02917 189 DPGNVDALLLkgDLLLSLGNIELALA-------------AYRKAIA----LRPNNIAVLLALATILIEA----GEFEEAE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 471 SYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRN 550
Cdd:TIGR02917 248 KHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 551 SAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYY 630
Cdd:TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 578825020 631 IDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPEN 687
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
495-583 |
1.91e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.95 E-value: 1.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 495 FANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDcFLKLHAILRNSAEVLYQIANIYELMENPSQAIEW 574
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*....
gi 578825020 575 LMQVVSVIP 583
Cdd:COG3063 82 LERALELDP 90
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
199-332 |
2.53e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.64 E-value: 2.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 199 VLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSVnkqmrIKIMQNI 278
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALE--LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-----AEALNNL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 578825020 279 GVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLI 332
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPdDAEALYNLGLALLELGRYDEAIEAYERAL 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
570-689 |
2.81e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 2.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 570 QAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLI 649
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 578825020 650 QPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVE 689
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
587-717 |
7.29e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 7.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 587 QVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRR 666
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 578825020 667 SGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDLG-LKDAQEYARKLKRLE 717
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGrPDEAIAALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
147-331 |
7.87e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.78 E-value: 7.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 147 ELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVT-TPENinldltYSVLFNLASQYSVNEMYAEALNTYQVIVK 225
Cdd:COG3914 67 AAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAlNPDN------AEALFNLGNLLLALGRLEEALAALRRALA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 226 NKMfSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-N 304
Cdd:COG3914 141 LNP-DFAEAY-LNLGEALRRLGRLEEAIAALRRALELDPD-----NAEALNNLGNALQDLGRLEEAIAAYRRALELDPdN 213
|
170 180
....*....|....*....|....*..
gi 578825020 305 LKAGYNLTICYFAIGDREKMKKAFQKL 331
Cdd:COG3914 214 ADAHSNLLFALRQACDWEVYDRFEELL 240
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
465-617 |
1.27e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.74 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 465 DFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKL 544
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578825020 545 HAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFP 617
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
476-587 |
1.70e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.25 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 476 AVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVL 555
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
|
90 100 110
....*....|....*....|....*....|..
gi 578825020 556 YQIANIYELMENPSQAIEWLMQVVSVIPTDPQ 587
Cdd:COG4235 89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
407-547 |
3.63e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.20 E-value: 3.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 407 ASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAA 486
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578825020 487 LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAI 547
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
198-332 |
4.35e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 4.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 198 SVLFNLASQYSVNEMYAEALNTYQVIVKNKMfSNAGILKMnMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQN 277
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDP-DNPEAFAL-LGEILLQLGDLDEAIVLLHEALELDPD-----EPEARLN 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 578825020 278 IGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLI 332
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPeHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
455-553 |
7.12e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.71 E-value: 7.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 455 NLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRL 534
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90
....*....|....*....
gi 578825020 535 DEALDCFLKLHAILRNSAE 553
Cdd:COG4235 102 AEAIAAWQKLLALLPADAP 120
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
199-332 |
2.12e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.86 E-value: 2.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 199 VLFNLASQYSVNEMYAEALNTYQVIVKNKmFSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSVnkqmrIKIMQNI 278
Cdd:COG0457 44 ALYNLGLAYLRLGRYEEALADYEQALELD-PDDAEAL-NNLGLALQALGRYEEALEDYDKALELDPDD-----AEALYNL 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 578825020 279 GVTFIQAGQYSDAINSYEHIMSMAPNL-KAGYNLTICYFAIGDREKMKKAFQKLI 332
Cdd:COG0457 117 GLALLELGRYDEAIEAYERALELDPDDaDALYNLGIALEKLGRYEEALELLEKLE 171
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
459-547 |
3.88e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 3.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 459 LYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFyKEALRNDSSCTEALYNIGLTYEKLNRLDEAL 538
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*....
gi 578825020 539 DCFLKLHAI 547
Cdd:COG3063 80 AYLERALEL 88
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
444-646 |
9.28e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.46 E-value: 9.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 444 KDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNP---AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEA 520
Cdd:COG4785 30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPdlaQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 521 LYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGeLYDREG 600
Cdd:COG4785 110 YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY-LAERKL 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 578825020 601 DKSQAFQYYYEsyryfpcnieviEWLGAYYIDTQFwEKAIQYFERA 646
Cdd:COG4785 189 DPEKALALLLE------------DWATAYLLQGDT-EEARELFKLA 221
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
495-588 |
1.09e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.84 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 495 FANGDYEKAAEFYKEALR---NDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNS---AEVLYQIANIYELMENP 568
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDY 83
|
90 100
....*....|....*....|
gi 578825020 569 SQAIEWLMQVVSVIPTDPQV 588
Cdd:COG1729 84 DKARATLEELIKKYPDSEAA 103
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
519-651 |
2.29e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.20 E-value: 2.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 519 EALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDR 598
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 578825020 599 EGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQP 651
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
528-617 |
3.52e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.71 E-value: 3.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 528 YEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEwLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQ 607
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 578825020 608 YYYESYRYFP 617
Cdd:COG3063 81 YLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
237-332 |
4.17e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 237 MNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICY 315
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPD-----NADALLDLAEALLAAGDTEEAEELLERALALDPdNPEALYLLGLAA 95
|
90
....*....|....*..
gi 578825020 316 FAIGDREKMKKAFQKLI 332
Cdd:COG4235 96 FQQGDYAEAIAAWQKLL 112
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
460-544 |
3.29e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.60 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 460 YYMGKDFAQASSYADIAVN---SDRYNPAALTNKGNTVFANGDYEKAAEFYKEALR---NDSSCTEALYNIGLTYEKLNR 533
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGD 82
|
90
....*....|.
gi 578825020 534 LDEALDCFLKL 544
Cdd:COG1729 83 YDKARATLEEL 93
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
422-514 |
4.75e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 4.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 422 AVTYLRQKDYNQAVEIL-KVLEKKDSRVksAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDY 500
Cdd:COG4235 24 GRAYLRLGRYDEALAAYeKALRLDPDNA--DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90
....*....|....
gi 578825020 501 EKAAEFYKEALRND 514
Cdd:COG4235 102 AEAIAAWQKLLALL 115
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
243-332 |
8.19e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 8.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 243 YLKQRNYSKAIKFYRMALDQVPsvNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPN----LKAGYNLTICYFAI 318
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYP--NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkaPDALLKLGLSYLEL 80
|
90
....*....|....
gi 578825020 319 GDREKMKKAFQKLI 332
Cdd:COG1729 81 GDYDKARATLEELI 94
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
424-609 |
1.05e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 51.45 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 424 TYLRQKDYNQAVEILKVLEKKDSrVKSAAATNLSALYYMGKdFAQASSYAD--IAV-----NSDRYNPAALTNKGNTVFA 496
Cdd:COG3071 128 AYRQLGDWEELLELLPALRKHKA-LSAEEAQALERRAYLGL-LRQAARDAEalKALwkalpRAERRDPELAAAYARALIA 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 497 NGDYEKAAEFYKEALRNDSSctEALYNiglTYEKLNRLDEA-----LDCFLKLHAilrNSAEVLYQIANIYELMENPSQA 571
Cdd:COG3071 206 LGDHDEAERLLREALKRQWD--PRLVR---LYGRLQGGDPAkqlkrAEKWLKKHP---NDPDLLLALGRLCLRNQLWGKA 277
|
170 180 190
....*....|....*....|....*....|....*...
gi 578825020 572 IEWLMQVVSVIPtDPQVLSKLGELYDREGDKSQAFQYY 609
Cdd:COG3071 278 REYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHY 314
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
199-332 |
1.06e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.27 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 199 VLFNLASQYSVNEMYAEALNTY-QVIVKNKMFSNAgilKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQN 277
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALeKALKLDPDCARA---LLLLAELYLEQGDYEEAIAALERALEQDPD-----YLPALPR 217
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 578825020 278 IGVTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTICYFAIGDREKMKKAFQKLI 332
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
199-332 |
1.12e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.88 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 199 VLFNLASQYSVNEMYAEALNTYQVIVKNKMFSNAgiLKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNI 278
Cdd:COG2956 78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE--ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE-----NAHAYCEL 150
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 578825020 279 GVTFIQAGQYSDAINSYEHIMSMAPN-LKAGYNLTICYFAIGDREKMKKAFQKLI 332
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERAL 205
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
561-651 |
1.27e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 561 IYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQyYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAI 640
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 578825020 641 QYFERASLIQP 651
Cdd:COG3063 80 AYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
533-685 |
2.13e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 533 RLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYES 612
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578825020 613 YRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFP 685
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
425-516 |
2.35e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 425 YLRQKDYNQAVEILKVLEKKDSRVkSAAATNLSALYYMGKDFAQASSYaDIAVNSDRYNPAALTNKGNTVFANGDYEKAA 504
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDN-ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 578825020 505 EFYKEALRNDSS 516
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
485-550 |
5.33e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 5.33e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578825020 485 AALTNKGNTVFANGDYEKAAEFYKEALR-------NDSSCT-EALYNIGLTYEKLNRLDEALDCFLKLHAILRN 550
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarrllgPDHPLTaTTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
425-678 |
5.50e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 49.14 E-value: 5.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 425 YLRQKDYNQAVEILKVLEKKDSRvkSAAATNLSA-LYYMGKDFAQASSYADIAVNSDRYNPAALTnkgntvfangDYEKA 503
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPR--HPQVLRLLLqAYRQLGDWEELLELLPALRKHKALSAEEAQ----------ALERR 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 504 AefYKEALRNDSSCTEALYNIgltyekLNRLDEALdcflklhailRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIP 583
Cdd:COG3071 163 A--YLGLLRQAARDAEALKAL------WKALPRAE----------RRDPELAAAYARALIALGDHDEAERLLREALKRQW 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 584 tDPQVLSKLGELydREGDKSQAfqyyyesyryfpcnIEVIE-WLGAY-------------YIDTQFWEKAIQYFERASLI 649
Cdd:COG3071 225 -DPRLVRLYGRL--QGGDPAKQ--------------LKRAEkWLKKHpndpdlllalgrlCLRNQLWGKAREYLEAALAL 287
|
250 260
....*....|....*....|....*....
gi 578825020 650 QPTQVKWQLMvASCFRRSGNYQKALDTYK 678
Cdd:COG3071 288 RPSAEAYAEL-ARLLEQLGDPEEAAEHYR 315
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
362-514 |
6.13e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 6.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 362 DHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVL 441
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578825020 442 EKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRND 514
Cdd:COG5010 81 LQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
242-332 |
7.23e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.16 E-value: 7.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 242 IYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAInSYEHIMSMAP-NLKAGYNLTICYFAIGD 320
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-----NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPnNAEALLNLAELLLELGD 74
|
90
....*....|..
gi 578825020 321 REKMKKAFQKLI 332
Cdd:COG3063 75 YDEALAYLERAL 86
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
520-581 |
1.26e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 1.26e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 520 ALYNIGLTYEKLNRLDEALDCFLKLHAILR--------NSAEVLYQIANIYELMENPSQAIEWLMQVVSV 581
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
240-332 |
1.32e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.84 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 240 GNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAI 318
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPD-----NAEALFNLGNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRL 159
|
90
....*....|....
gi 578825020 319 GDREKMKKAFQKLI 332
Cdd:COG3914 160 GRLEEAIAALRRAL 173
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
241-332 |
1.65e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 241 NIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIG 319
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPN-----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPdNPNAYSNLAALLLSLG 136
|
90
....*....|...
gi 578825020 320 DREKMKKAFQKLI 332
Cdd:COG5010 137 QDDEAKAALQRAL 149
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
425-513 |
2.52e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 425 YLRQKDYNQAVEILKVLEKK--DSRVKSAAATNLSALYYMGKDFAQASSYADIAVN---SDRYNPAALTNKGNTVFANGD 499
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGD 82
|
90
....*....|....
gi 578825020 500 YEKAAEFYKEALRN 513
Cdd:COG1729 83 YDKARATLEELIKK 96
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
392-609 |
2.54e-05 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 46.46 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 392 TSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMG----KDFA 467
Cdd:COG0790 5 AAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGrgvpKDYE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 468 QASSYADIAVNSDryNPAALTNKGNtVFANG-----DYEKAAEFYKEALRNDSscTEALYNIGLTYEK----LNRLDEAL 538
Cdd:COG0790 85 KALEWFEKAAEQG--DAEAQYNLGL-MYEEGlgvpqDYAKALEWYEKAAEQGD--ADAQYNLGLLYLNgegvPKDPAKAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578825020 539 DCFLKlhAILRNSAEVLYQIANIYE----LMENPSQAIEWLMQVVSVipTDPQVLSKLGELYDR----EGDKSQAFQYY 609
Cdd:COG0790 160 EWYRK--AAEQGDADAQYNLGVLYEngrgVPKDPAKALEWYRKAAEQ--GDADAQYNLGRLYLNgegvEKDLEKALRWL 234
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
617-716 |
3.24e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 617 PCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVR 696
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100
....*....|....*....|.
gi 578825020 697 LCTDLG-LKDAQEYARKLKRL 716
Cdd:COG4235 94 AAFQQGdYAEAIAAWQKLLAL 114
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
528-617 |
3.64e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.83 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 528 YEKLNRLDEALDCFLKLHAILRNS---AEVLYQIANIYELMENPSQAIEWLMQVVSVIPTD---PQVLSKLGELYDREGD 601
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82
|
90
....*....|....*.
gi 578825020 602 KSQAFQYYYESYRYFP 617
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
496-638 |
3.65e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.05 E-value: 3.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 496 ANGDYEKAAEFYKEALR-----NDSSctEALYNIGLTYEKLNRLDEALDcflklhailrnsaevLYQIAniyeLMENPSQ 570
Cdd:PRK02603 47 ADGEYAEALENYEEALKleedpNDRS--YILYNMGIIYASNGEHDKALE---------------YYHQA----LELNPKQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 571 aiewlmqvvsviptdPQVLSKLGELYDREGDKS--------------QAFQYYYESYRYFPCNieviewlgayYIDTQFW 636
Cdd:PRK02603 106 ---------------PSALNNIAVIYHKRGEKAeeagdqdeaealfdKAAEYWKQAIRLAPNN----------YIEAQNW 160
|
..
gi 578825020 637 EK 638
Cdd:PRK02603 161 LK 162
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
199-304 |
4.42e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 199 VLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNI 278
Cdd:COG4783 40 AFALLGEILLQLGDLDEAIVLLHEALE--LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE-----HPEAYLRL 112
|
90 100
....*....|....*....|....*.
gi 578825020 279 GVTFIQAGQYSDAINSYEHIMSMAPN 304
Cdd:COG4783 113 ARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
595-686 |
4.80e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 595 LYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQyFERASLIQPTQVKWQLMVASCFRRSGNYQKAL 674
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 578825020 675 DTYKDTHRKFPE 686
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
234-304 |
4.88e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 4.88e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578825020 234 ILKMNMGNIYLKQRNYSKAIKFYRMALD---QVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPN 304
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
470-715 |
6.23e-05 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 45.26 E-value: 6.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 470 SSYADIAVNSDrynPAALTNKGNTVFANGDYEKAAEFYKEALRN--DSSCTE-ALYNIGLTYEKLNRLDEALDC---FLK 543
Cdd:COG4105 21 SSFKKALKSWD---AEELYEEAKEALEKGDYEKAIKLFEELEPRypGSPYAEqAQLMLAYAYYKQGDYEEAIAAadrFIK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 544 LHAILRNSAEVLYQIANI-YELMENPS-------QAIEWLMQVVSVIPTD---PQVLSKLGELYDREGDKSqafqyyyes 612
Cdd:COG4105 98 LYPNSPNADYAYYLRGLSyYEQSPDSDrdqtstrKAIEAFQELINRYPDSeyaEDAKKRIDELRDKLARKE--------- 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 613 yryfpcnIEViewlGAYYIDTQFWEKAIQYFerasliqptqvkwqlmvascfrrsgnyQKALDTYKDThrkfPENVECLR 692
Cdd:COG4105 169 -------LEV----ARYYLKRGAYVAAINRF---------------------------QNVLEDYPDT----PAVEEALY 206
|
250 260
....*....|....*....|....
gi 578825020 693 FLVRLCTDLGLKD-AQEYARKLKR 715
Cdd:COG4105 207 LLVEAYYALGRYDeAQDAAAVLGK 230
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
408-534 |
9.68e-05 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 44.46 E-value: 9.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 408 SQYVELANdLEINKAvtYLRQKDYNQAVEILK-VLEK-KDSRVKSAAATNLSALYYMGKDFAQASSYADiAVNSDRYNPA 485
Cdd:COG2976 86 TAYAALAA-LLLAKA--AVDAGDLDKAAAQLQwVLDNaKDPALKALARLRLARVLLAQKKYDEALATLD-AVKPEAFAAL 161
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 578825020 486 ALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLtyeKLNRL 534
Cdd:COG2976 162 YAELRGDILLAQGDKAEARAAYQKALAALPEDAPLRQLLQM---KLDDL 207
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
419-691 |
1.17e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.84 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 419 INKAVTYLRQKDYNQAVEILKVLEKKDSRvksaaatNLSALYYMGKDFAQASSYADIAVNSDR-----YNPAALtnkgNT 493
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPN-------DAEARFLLGKIYLALGDYAAAEKELRKalslgYPKNQV----LP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 494 VFA-----NGDYEKA-AEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMEN 567
Cdd:TIGR02917 95 LLArayllQGKFQQVlDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 568 PSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERAS 647
Cdd:TIGR02917 175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 578825020 648 LIQPTQVK---WQLMVAscFRRsGNYQKALDTYKDTHRKFPENVECL 691
Cdd:TIGR02917 255 KKAPNSPLahyLKALVD--FQK-KNYEDARETLQDALKSAPEYLPAL 298
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
491-531 |
1.92e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 1.92e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 578825020 491 GNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKL 531
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
238-265 |
3.37e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 3.37e-04
10 20
....*....|....*....|....*...
gi 578825020 238 NMGNIYLKQRNYSKAIKFYRMALDQVPS 265
Cdd:smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
420-580 |
3.94e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 420 NKAVTYLRQKDYNQAVEILKVLEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGD 499
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPD-LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 500 YEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRlDEALdcflklhailrnsAEVLYQIANIYELMENPSQAIEWLMQVV 579
Cdd:COG4785 157 YELAIADLEKALELDPNDPERALWLYLAERKLDP-EKAL-------------ALLLEDWATAYLLQGDTEEARELFKLAL 222
|
.
gi 578825020 580 S 580
Cdd:COG4785 223 A 223
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
497-561 |
3.96e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 39.10 E-value: 3.96e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578825020 497 NGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANI 561
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| SNAP |
pfam14938 |
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ... |
229-320 |
4.62e-04 |
|
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.
Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 42.94 E-value: 4.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 229 FSNAGILKMNMGNIYLKQR-NYSKAIKFYRMALD-----QVPSVNKQMRIKIMQnigvTFIQAGQYSDAINSYEHI--MS 300
Cdd:pfam14938 102 FRRAAKHKKEIAELYEQELgDLEKAIEAYEQAADwyegeGASALANKCYLKVAD----LSAELEDYPKAIEIYEKVakNS 177
|
90 100 110
....*....|....*....|....*....|
gi 578825020 301 MAPNL----------KAGynltICYFAIGD 320
Cdd:pfam14938 178 LENNLlkysvkeyflKAG----LCHLAAGD 203
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
487-533 |
5.91e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.58 E-value: 5.91e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 578825020 487 LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNR 533
Cdd:PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
403-605 |
5.94e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 42.87 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 403 EVVKASQYVELAND--LEInkavtYLRQKDYNQAVEILKVLEKKDS---RVKSA------AATNLSAlyymgKDFAQASS 471
Cdd:PRK11788 132 QLVDEGDFAEGALQqlLEI-----YQQEKDWQKAIDVAERLEKLGGdslRVEIAhfycelAQQALAR-----GDLDAARA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 472 YADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRND----SSCTEALYNIgltYEKLNRLDEALDcFLKLHAI 547
Cdd:PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDpeylSEVLPKLMEC---YQALGDEAEGLE-FLRRALE 277
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 578825020 548 LRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTdPQVLSKLGELYDREGDKSQA 605
Cdd:PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRA 334
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
229-330 |
6.24e-04 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 42.57 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 229 FSNAGILKMNMGNIYLKQR-NYSKAIKFYRMA-----LDQVPSVNKQMRIKIMQnigvTFIQAGQYSDAINSYEHI--MS 300
Cdd:cd15832 107 FRQAAKHLKEIAELYENELgDLDKAIEAYEQAadyyeGEGANSLANKCYLKVAD----LAAQLEDYDKAIEIYEQVarSS 182
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 578825020 301 MAPNL----------KAGynltICYFAIGDREKMKKAFQK 330
Cdd:cd15832 183 LENNLlkysakdyflKAG----LCHLAAGDVVAAQRALEK 218
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
237-265 |
6.62e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 6.62e-04
10 20
....*....|....*....|....*....
gi 578825020 237 MNMGNIYLKQRNYSKAIKFYRMALDQVPS 265
Cdd:pfam00515 5 YNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
199-330 |
7.50e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.06 E-value: 7.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 199 VLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNI 278
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALE--LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD-----NADAHSNL 220
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 578825020 279 GVTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTICYFAIGDREKMKKAFQK 330
Cdd:COG3914 221 LFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARA 272
|
|
| ANAPC3 |
pfam12895 |
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ... |
472-543 |
8.06e-04 |
|
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.
Pssm-ID: 463743 [Multi-domain] Cd Length: 82 Bit Score: 38.77 E-value: 8.06e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578825020 472 YADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSScTEALYNIGLTYEKLNRLDEALDCFLK 543
Cdd:pfam12895 11 LAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSS-LGCRYLFAQCLLKLKKYDEALDALGK 81
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
629-717 |
9.15e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 9.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 629 YYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDtYKDTHRKFPENVECLRFLVRLCTDLG-LKDAQ 707
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGdYDEAL 79
|
90
....*....|
gi 578825020 708 EYARKLKRLE 717
Cdd:COG3063 80 AYLERALELD 89
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
519-543 |
9.91e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 9.91e-04
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
159-537 |
1.23e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.38 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 159 GDLKLALEKAKDAgrkervlvrQREQVTTPENINLdltysvlfnLASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMn 238
Cdd:TIGR02917 581 GQLKKALAILNEA---------ADAAPDSPEAWLM---------LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL- 641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 239 mGNIYLKQRNYSKAIKFYRMALDQVPSvNKQMRIKIMQnigvTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTI-CYFA 317
Cdd:TIGR02917 642 -ADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ----LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGdLYLR 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 318 IGDREKMKKAFQKLITvpleidedkyISPSDDPHTNLvteaikndHLRQMERERKAMAEKYIMTSAKliapvietsfaag 397
Cdd:TIGR02917 716 QKDYPAAIQAYRKALK----------RAPSSQNAIKL--------HRALLASGNTAEAVKTLEAWLK------------- 764
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 398 ydwcvevvkasqyvELAND--LEINKAVTYLRQKDYNQAVEILKVLEKKDSrvKSAAA-TNLSALYYMGKDfAQASSYAD 474
Cdd:TIGR02917 765 --------------THPNDavLRTALAELYLAQKDYDKAIKHYQTVVKKAP--DNAVVlNNLAWLYLELKD-PRALEYAE 827
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578825020 475 IAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEA 537
Cdd:TIGR02917 828 RALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
207-303 |
1.24e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.33 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 207 YSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAG 286
Cdd:COG5010 64 YNKLGDFEESLALLEQALQ--LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD-----NPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 578825020 287 QYSDAINSYEHIMSMAP 303
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
481-630 |
1.40e-03 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 42.21 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 481 RYNPAALTNKGNTVFANGDYEkAAEFYKEALRNDSSCTEAL--------YNIGLTYEKLNRLDEALDcflklHAilrNSA 552
Cdd:PRK09782 539 DMSNEDLLAAANTAQAAGNGA-ARDRWLQQAEQRGLGDNALywwlhaqrYIPGQPELALNDLTRSLN-----IA---PSA 609
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578825020 553 EVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYY 630
Cdd:PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
200-304 |
1.62e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 200 LFNLASQYSVNEMYAEALNTYQVIVKNKmFSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIG 279
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLD-PDNADAL-LDLAEALLAAGDTEEAEELLERALALDPD-----NPEALYLLG 92
|
90 100
....*....|....*....|....*
gi 578825020 280 VTFIQAGQYSDAINSYEHIMSMAPN 304
Cdd:COG4235 93 LAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
485-543 |
1.70e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.46 E-value: 1.70e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 578825020 485 AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLK 543
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLR 59
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
199-333 |
2.32e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.61 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 199 VLFNLASQYSVNEMYAEALNTYQVIVKnKMFSNAGILKmNMGNIYLKQRNySKAIKFYRMALDQVPSVNKqmrikIMQNI 278
Cdd:TIGR02917 772 LRTALAELYLAQKDYDKAIKHYQTVVK-KAPDNAVVLN-NLAWLYLELKD-PRALEYAERALKLAPNIPA-----ILDTL 843
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 578825020 279 GVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLIT 333
Cdd:TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPeAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
484-562 |
2.63e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 40.23 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 484 PAALTNKGNTVFANGDYEKAAEFYKEALRN--DSSCTE-ALYNIGLTYEKLNRLDEAL---DCFLKLHAILRNSAEVLYQ 557
Cdd:TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRypFSPYAEqAQLDLAYAYYKSGDYAEAIaaaDRFIRLHPNHPDADYAYYL 112
|
....*
gi 578825020 558 IANIY 562
Cdd:TIGR03302 113 RGLSN 117
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
519-543 |
2.68e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 2.68e-03
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
489-544 |
2.72e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 2.72e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 578825020 489 NKGNTVFANGDYEKAAEFYKEALRNDSS---CTEALYNIGLTYEKLNRLDEALDCFLKL 544
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAA 60
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
496-722 |
2.86e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 496 ANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEwL 575
Cdd:TIGR02917 34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLD-E 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 576 MQVVSVIPTDPQ--VLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLgAYYIDTQF-WEKAIQYFERASLIQPT 652
Cdd:TIGR02917 113 LPGKTLLDDEGAaeLLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL-AQLALAENrFDEARALIDEVLTADPG 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 653 QVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLctdlgLKDAQEYARKLKRLEKMKEI 722
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI-----LIEAGEFEEAEKHADALLKK 256
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
484-517 |
3.13e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 3.13e-03
10 20 30
....*....|....*....|....*....|....
gi 578825020 484 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSC 517
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
213-304 |
5.28e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 213 YAEALNTYQVIVKN----KMFSNAgilKMNMGNIYLKQRNYSKAIKFYRMALDQVPsvNKQMRIKIMQNIGVTFIQAGQY 288
Cdd:COG1729 9 YDEAIAAFKAFLKRypnsPLAPDA---LYWLGEAYYALGDYDEAAEAFEKLLKRYP--DSPKAPDALLKLGLSYLELGDY 83
|
90
....*....|....*.
gi 578825020 289 SDAINSYEHIMSMAPN 304
Cdd:COG1729 84 DKARATLEELIKKYPD 99
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
484-517 |
5.55e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 5.55e-03
10 20 30
....*....|....*....|....*....|....
gi 578825020 484 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSC 517
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
519-550 |
6.74e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 6.74e-03
10 20 30
....*....|....*....|....*....|..
gi 578825020 519 EALYNIGLTYEKLNRLDEALDCFLKLHAILRN 550
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
458-516 |
7.29e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.77 E-value: 7.29e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578825020 458 ALYYMGkDFAQASSYADIAVNSDRYNP---AALTNKGNTVFANGDYEKAAEFYKEALRNDSS 516
Cdd:pfam13432 6 AALRAG-DYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
598-686 |
7.86e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 598 REGDKSQAFQYYYESYRYFPCNI---EVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQ---LMVASCFRRSGNYQ 671
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGDYD 84
|
90
....*....|....*
gi 578825020 672 KALDTYKDTHRKFPE 686
Cdd:COG1729 85 KARATLEELIKKYPD 99
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
636-720 |
8.56e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825020 636 WEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDLG-LKDAQEYARKLK 714
Cdd:COG5010 70 FEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGqDDEAKAALQRAL 149
|
....*.
gi 578825020 715 RLEKMK 720
Cdd:COG5010 150 GTSPLK 155
|
|
| |
