|
Name |
Accession |
Description |
Interval |
E-value |
| CEP63 |
pfam17045 |
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole ... |
85-347 |
4.27e-107 |
|
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole activity.
Pssm-ID: 465338 [Multi-domain] Cd Length: 264 Bit Score: 327.93 E-value: 4.27e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 85 LTSCEAELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYK 164
Cdd:pfam17045 1 LSSCEAELQELMKQIDIMVAHKKSEWEGQTRALETRLDIREEELLSARNTLERKHKEIGLLRQQLEELEKGKQELVAKYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 165 EELLKLQEELSRLKRSYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKAL 244
Cdd:pfam17045 81 QQLQKLQEELSKLKRSYEKLQRKQLKEAREEAKSREEDRSELSRLNGKLEEFRQKSLEWEQQRLQYQQQVASLEAQRKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 245 AEQSEIIQA-----QLANRKQKLEsvelSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKE 319
Cdd:pfam17045 161 AEQSSLIQSaayqvQLEGRKQCLE----ASQSEIQRLRSKLERAQDSLCAQELELERLRMRVSELGDSNRKLLEEQQRLL 236
|
250 260
....*....|....*....|....*...
gi 755531333 320 EKLRESEKLLEALQEEQKELKASLQSQE 347
Cdd:pfam17045 237 EELRMSQRQLQVLQNELMELKATLQSQD 264
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
106-431 |
1.26e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.64 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 106 KKSEWEGQTHALEtcLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAmeykeellklqeelSRLKRSYEKLQ 185
Cdd:TIGR02169 219 EKREYEGYELLKE--KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE--------------QLLEELNKKIK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 186 KKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQ---AQLANRKQKL 262
Cdd:TIGR02169 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERkrrDKLTEEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 263 ESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKAS 342
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 343 LqsqETFILEAKMQE-KLQTTLKAVGT-QQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGS 420
Cdd:TIGR02169 443 K---EDKALEIKKQEwKLEQLAADLSKyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519
|
330
....*....|.
gi 755531333 421 LESVSATCKQL 431
Cdd:TIGR02169 520 IQGVHGTVAQL 530
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
125-444 |
1.81e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 1.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 125 DRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKLQKKQlREFRGNTKSFREDRS 204
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE-QEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 205 EIERLTGKIEEFRQKSLDWEkqRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQ---SEIQHLNSKLE 281
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLE--ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEyleKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 282 RAKDTICANELEIERLNIRVNDLmgtnmtiLQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQ----E 357
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEEL-------EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQiekkR 916
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 358 KLQTTLKA-VGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDfshSSEELLQA-------------EVTRLEGSLES 423
Cdd:TIGR02169 917 KRLSELKAkLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQ---RVEEEIRAlepvnmlaiqeyeEVLKRLDELKE 993
|
330 340
....*....|....*....|....
gi 755531333 424 VSATCKQLS---QELMEKYEELKR 444
Cdd:TIGR02169 994 KRAKLEEERkaiLERIEEYEKKKR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
181-488 |
2.50e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 2.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 181 YEKLQKKqLREFRGN--TKSFREDRSEIERLTGKIEEFRQKSLDWEKQRliyQQQVSSLEAQRKALAEQSEIIqaqlaNR 258
Cdd:TIGR02169 213 YQALLKE-KREYEGYelLKEKEALERQKEAIERQLASLEEELEKLTEEI---SELEKRLEEIEQLLEELNKKI-----KD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 259 KQKLESVELssQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKE 338
Cdd:TIGR02169 284 LGEEEQLRV--KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 339 LKASLQsqetfILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERkysSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLE 418
Cdd:TIGR02169 362 LKEELE-----DLRAELEEVDKEFAETRDELKDYREKLEKLKREI---NELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 419 GSLesvsatcKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSalegMKMEISQLTREL 488
Cdd:TIGR02169 434 AKI-------NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR----VEKELSKLQREL 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
176-484 |
5.94e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 5.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 176 RLKRSYEKLQKKQLRefrgNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQL 255
Cdd:TIGR02168 236 ELREELEELQEELKE----AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 256 ANRKQKLESVELssqsEIQHLNSKLERAKDTICANELEIERLNIRVNDLmgtnmtilqdhrqkEEKLRESEKLLEALQEE 335
Cdd:TIGR02168 312 ANLERQLEELEA----QLEELESKLDELAEELAELEEKLEELKEELESL--------------EAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 336 QKELKASLQSQETFILEAKMQEKLQTtlkavGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEEL--LQAE 413
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLN-----NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeLEEE 448
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755531333 414 VTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLkEQILQADQTYSSALEGMKMEISQL 484
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVKALLKNQSGL 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
177-583 |
7.87e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 7.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 177 LKRSYEKL--QKKQLREFrgntKSFREDRSEIER--LTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQ 252
Cdd:TIGR02168 198 LERQLKSLerQAEKAERY----KELKAELRELELalLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 253 AQLANRKQKLESVelssQSEIQHLNSKLERAkdticanELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEAL 332
Cdd:TIGR02168 274 LEVSELEEEIEEL----QKELYALANEISRL-------EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 333 QEEQKELKASLQSqetfiLEAKMQEklqttlkAVGTQQSVERPLEDCQKErkysspgqgvLDNVLSQLDFSHSSEELLQA 412
Cdd:TIGR02168 343 EEKLEELKEELES-----LEAELEE-------LEAELEELESRLEELEEQ----------LETLRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 413 EVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYR-TEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQ- 490
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAa 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 491 -RDITIASAKCSSsdmekqLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSEtVMKLELGLHEAKEISLAdlqenyiEA 569
Cdd:TIGR02168 481 eRELAQLQARLDS------LERLQENLEGFSEGVKALLKNQSGLSGILGVLSE-LISVDEGYEAAIEAALG-------GR 546
|
410
....*....|....
gi 755531333 570 LNKLVSENQQLQKD 583
Cdd:TIGR02168 547 LQAVVVENLNAAKK 560
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-463 |
9.41e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 9.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 124 RDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEykeellklqeelsrlKRSYEKLQKKQLREFRGNTKSFREDR 203
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE---------------LEQLRKELEELSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 204 SEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVElssqSEIQHLNSklera 283
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR----EALDELRA----- 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 284 kdticanelEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFIleAKMQEKLQTTL 363
Cdd:TIGR02168 811 ---------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI--EELESELEALL 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 364 KAVgtqQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHsseELLQAEVTRLEGSLESVSATCKQLSQELMEKYE-EL 442
Cdd:TIGR02168 880 NER---ASLEEALALLRSELEELSEELRELESKRSELRREL---EELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTL 953
|
330 340
....*....|....*....|.
gi 755531333 443 KRMEGHNNEYRTEIKKLKEQI 463
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRL 974
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
89-393 |
9.94e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 9.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 89 EAELQELMKQIDIMVAhKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQemameykeell 168
Cdd:COG1196 238 EAELEELEAELEELEA-ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA----------- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 169 klqEELSRLKRSYEKLQKKQLREfrgntksfREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQS 248
Cdd:COG1196 306 ---RLEERRRELEERLEELEEEL--------AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 249 EIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDticaNELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKL 328
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755531333 329 LEALQEEQKELKASLQSQETfiLEAKMQEKLQTTLKAVGTQQSVERPLEdcQKERKYSSPGQGVL 393
Cdd:COG1196 451 EAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLL--EAEADYEGFLEGVK 511
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
90-403 |
1.26e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 90 AELQELmkQIDIMVAHKKSEwEGQTHALETCLDIRDRELKALRSQLDMkhkevgiLHQQIEEHEKTKQEMAMEYKEELLK 169
Cdd:TIGR02168 220 AELREL--ELALLVLRLEEL-REELEELQEELKEAEEELEELTAELQE-------LEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 170 LQEELSRLKRSyeKLQKKQLREfrgntkSFREDRSEIERLTGKIEEfrqksldWEKQRLIYQQQVSSLEAQRKALAEQSE 249
Cdd:TIGR02168 290 LYALANEISRL--EQQKQILRE------RLANLERQLEELEAQLEE-------LESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 250 IIQAQLANRKQKLESVELSSQS---EIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRES- 325
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEEleeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAe 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 326 -----------EKLLEALQEEQKELKASLQSQETFILEAkmQEKLQTTLKAVGTQQSVERPLEDCQkeRKYSSPGQGVLD 394
Cdd:TIGR02168 435 lkelqaeleelEEELEELQEELERLEEALEELREELEEA--EQALDAAERELAQLQARLDSLERLQ--ENLEGFSEGVKA 510
|
....*....
gi 755531333 395 NVLSQLDFS 403
Cdd:TIGR02168 511 LLKNQSGLS 519
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
175-601 |
1.60e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 175 SRLKRSYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKsldwEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQ 254
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAEL----QEELEELEEELEELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 255 LANRKQKLESVELSSQ---------------SEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNM-TILQDHRQK 318
Cdd:COG4717 125 LQLLPLYQELEALEAElaelperleeleerlEELRELEEELEELEAELAELQEELEELLEQLSLATEEELqDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 319 EEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTT--LKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNV 396
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 397 LSQLDFSHSSEELLQAEVTRLEGSLEsvsATCKQLSQELMEKYeeLKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEG 476
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQAL---PALEELEEEELEEL--LAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 477 MKmEIsQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETV----MKLELGLH 552
Cdd:COG4717 360 EE-EL-QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeeeLEEELEEL 437
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 755531333 553 EAKEISLADLQENYIEALNKLVSENQQLQKDlmSTKSELEHATNMCKKK 601
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEED--GELAELLQELEELKAE 484
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
175-605 |
3.41e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.95 E-value: 3.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 175 SRLKRSYEKLqKKQLREFRGNTKSF----REDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEI 250
Cdd:TIGR04523 120 NKLEVELNKL-EKQKKENKKNIDKFlteiKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 251 IQAQLANRKQKLESVElSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLE 330
Cdd:TIGR04523 199 LELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 331 ALQEEQKELKASLQSQETFILEAKmQEKLQTTLKAVGTQqsverpLEDCQKErkysspgqgvLDNVLSQLDFSHSSEELL 410
Cdd:TIGR04523 278 QNNKKIKELEKQLNQLKSEISDLN-NQKEQDWNKELKSE------LKNQEKK----------LEEIQNQISQNNKIISQL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 411 QAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQIlqadqtysSALEGMKMEISQLTRELhq 490
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI--------NDLESKIQNQEKLNQQK-- 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 491 rditiasakcsssdmEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMKLELGLHEAKeiSLADLQENYIEAL 570
Cdd:TIGR04523 411 ---------------DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLD--NTRESLETQLKVL 473
|
410 420 430
....*....|....*....|....*....|....*....
gi 755531333 571 ----NKLVSENQQLQKDLMSTKSELEHATNMCKKKDGEI 605
Cdd:TIGR04523 474 srsiNKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
130-601 |
6.12e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 56.27 E-value: 6.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 130 ALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLK---------RSYEKLQKKQLREFRGNTKSFR 200
Cdd:pfam05483 96 SIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKdlikennatRHLCNLLKETCARSAEKTKKYE 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 201 EDRseierltgkiEEFRQKSLDWEKQrliYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHLNSKL 280
Cdd:pfam05483 176 YER----------EETRQVYMDLNNN---IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQV 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 281 ERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLqsQETFILEAKMQEKLQ 360
Cdd:pfam05483 243 SLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSL--QRSMSTQKALEEDLQ 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 361 TTLKAV-GTQQSVERPLEDCQKERKYSSpgqgvldNVLSQLDFSHSS-EELLQAEVTRLEGSLESVsatcKQLSQELMEK 438
Cdd:pfam05483 321 IATKTIcQLTEEKEAQMEELNKAKAAHS-------FVVTEFEATTCSlEELLRTEQQRLEKNEDQL----KIITMELQKK 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 439 YEELKRMEGHNNEYRTEIKKLKeQILQADQTY----------SSALEGMKMEISQL----TRELHQRDITIASAKCSSSD 504
Cdd:pfam05483 390 SSELEEMTKFKNNKEVELEELK-KILAEDEKLldekkqfekiAEELKGKEQELIFLlqarEKEIHDLEIQLTAIKTSEEH 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 505 MEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETV--MKLELGLHEAKEISLADLQENYIEALNKLVSENQQLQK 582
Cdd:pfam05483 469 YLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEAsdMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD 548
|
490
....*....|....*....
gi 755531333 583 DLMSTKSELEHATNMCKKK 601
Cdd:pfam05483 549 ELESVREEFIQKGDEVKCK 567
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
90-655 |
6.43e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 6.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 90 AELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEE-----HEKTKQemameyk 164
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKlladlHKREKE------- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 165 eellklqeelsrlkRSYEKLQKKQLREF-RGNTKSFREDRSEIERLTGKIEEFRQ--KSLDWEKQRLIYQQ--------- 232
Cdd:pfam15921 393 --------------LSLEKEQNKRLWDRdTGNSITIDHLRRELDDRNMEVQRLEAllKAMKSECQGQMERQmaaiqgkne 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 233 ---QVSSLEAQRKALAEQSEIIQAQLANRKQKLESvelsSQSEIQHLNSKLERAKDTICANELEIERLNIRVNdlmgTNM 309
Cdd:pfam15921 459 sleKVSSLTAQLESTKEMLRKVVEELTAKKMTLES----SERTVSDLTASLQEKERAIEATNAEITKLRSRVD----LKL 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 310 TILQDHRQKEEKLRESEKLLEALQEEQKELKASLQsqetfILEAKMQEKLQ------TTLKAVGTQQS-VERPLEDCQKE 382
Cdd:pfam15921 531 QELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIE-----ILRQQIENMTQlvgqhgRTAGAMQVEKAqLEKEINDRRLE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 383 RKYSSPGQGVLDNVLSQLDFSHSSEELlqAEVTRLEGSLESVSATcKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQ 462
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDLEL--EKVKLVNAGSERLRAV-KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 463 ILQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSSSD-------MEKQLKAE-----------------MQKA-- 516
Cdd:pfam15921 683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHamkvamgMQKQITAKrgqidalqskiqfleeaMTNAnk 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 517 ------EEK----------AVEHKEILSQLESLKLENHRLSETVMKLELGLHEAkEISLADLQEnyiealnkLVSENQQl 580
Cdd:pfam15921 763 ekhflkEEKnklsqelstvATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA-SLQFAECQD--------IIQRQEQ- 832
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755531333 581 qkdlMSTKSELEHATNMckkkdGEIFNPAHSRAAGFKNAELKPIHGQHRHDGIKTEQYKT---GHHSPRGQTLDSiDP 655
Cdd:pfam15921 833 ----ESVRLKLQHTLDV-----KELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQSTAsflSHHSRKTNALKE-DP 900
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
106-607 |
7.88e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 7.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 106 KKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMameykeelLKLQEELSRLKRSYEKLQ 185
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQI--------SELKKQNNQLKDNIEKKQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 186 KKqlrefrgntksFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLAN-RKQKLES 264
Cdd:TIGR04523 239 QE-----------INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlNNQKEQD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 265 VELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQ 344
Cdd:TIGR04523 308 WNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 345 SQETFI--LEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEEL-----------LQ 411
Cdd:TIGR04523 388 NLESQIndLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELiiknldntresLE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 412 AEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQI---LQADQTYSSALEGMKMEISQLTREL 488
Cdd:TIGR04523 468 TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIsslKEKIEKLESEKKEKESKISDLEDEL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 489 HQRDITIASAKCSSSDMEK-----QLKAEMQKAEEKAVEHKEILSQLESLKLE-NHRLSETVMKL-----ELGLHEAKEI 557
Cdd:TIGR04523 548 NKDDFELKKENLEKEIDEKnkeieELKQTQKSLKKKQEEKQELIDQKEKEKKDlIKEIEEKEKKIsslekELEKAKKENE 627
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 755531333 558 SLADLQENYIEALNKLVSENQQLQKDL---MSTKSELEHATNMCKKKDGEIFN 607
Cdd:TIGR04523 628 KLSSIIKNIKSKKNKLKQEVKQIKETIkeiRNKWPEIIKKIKESKTKIDDIIE 680
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
290-592 |
9.29e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 9.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 290 NELEIERLNI-RVNDLMG---TNMTILQDHRQKEEKLREseklleaLQEEQKELKASLQSQETFILEAKMQEKLQTTLKA 365
Cdd:COG1196 179 RKLEATEENLeRLEDILGeleRQLEPLERQAEKAERYRE-------LKEELKELEAELLLLKLRELEAELEELEAELEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 366 VGTQQSVERPLEDCQKERKysspgqgVLDNVLSQLDFS----HSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEE 441
Cdd:COG1196 252 EAELEELEAELAELEAELE-------ELRLELEELELEleeaQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 442 LKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEgmkmEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAV 521
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELEEAEA----ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755531333 522 EHKEILSQLESLKLENHRLSETVMKLELGL--HEAKEISLADLQENYIEALNKLVSENQQLQKDLMSTKSELE 592
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALaeLEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
148-426 |
1.28e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 148 QIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSyEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQR 227
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEEL-EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 228 LIYQQQVSSLEAQRKALAEQSEIIQAQLAN-----------------RKQKLESVELSSQSEIQHLNSKLERAKDTICAN 290
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAEleeeleeleeeleeleeELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 291 ELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKM--QEKLQTTLKAVGT 368
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEalEEAAEEEAELEEE 457
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 755531333 369 QQSVERPLEDCQKERKYsspGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSA 426
Cdd:COG1196 458 EEALLELLAELLEEAAL---LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
126-605 |
1.33e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 126 RELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMA---MEYKEELLKLQEELSRLKRSYEKLQK-----KQLREFRGNTK 197
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIEeleKELESLEGSKRKLEEKIRELEERIEElkkeiEELEEKVKELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 198 SFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEiiqaqlanRKQKLESVELSSQSEIQHLN 277
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE--------RLEELKKKLKELEKRLEELE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 278 SKlERAKDTICANELEIERLNIRVNDLmgtnmtilqDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKmqE 357
Cdd:PRK03918 359 ER-HELYEEAKAKKEELERLKKRLTGL---------TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK--K 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 358 KLQTTLKAVGTQQSVERPLEDCQKE---RKYSSPgqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLsqE 434
Cdd:PRK03918 427 AIEELKKAKGKCPVCGRELTEEHRKellEEYTAE----LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK--E 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 435 LMEKYEELK-RMEGHNNEY----RTEIKKLKEQilqadqtyssaLEGMKMEISQLTRELHqrditiasakcSSSDMEKQL 509
Cdd:PRK03918 501 LAEQLKELEeKLKKYNLEElekkAEEYEKLKEK-----------LIKLKGEIKSLKKELE-----------KLEELKKKL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 510 KAEMQKAEEKAVEHKEILSQLESLKLenhrlsETVMKLELGLHEAKEIsladlQENYIEALNkLVSENQQLQKDLMSTKS 589
Cdd:PRK03918 559 AELEKKLDELEEELAELLKELEELGF------ESVEELEERLKELEPF-----YNEYLELKD-AEKELEREEKELKKLEE 626
|
490
....*....|....*.
gi 755531333 590 ELEHATNMCKKKDGEI 605
Cdd:PRK03918 627 ELDKAFEELAETEKRL 642
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
109-605 |
1.93e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 109 EWEGQTHaLETCLDIRDRELKALRSQL----DMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKlqeelsrlkRSYEKL 184
Cdd:pfam15921 69 AYPGKEH-IERVLEEYSHQVKDLQRRLnesnELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADI---------RRRESQ 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 185 QKKQLREFRGNT-------KSFRED-----RSEIERL-------TGKIEEFRQKSLDWEKQ--RLIYQQQVSSL------ 237
Cdd:pfam15921 139 SQEDLRNQLQNTvheleaaKCLKEDmledsNTQIEQLrkmmlshEGVLQEIRSILVDFEEAsgKKIYEHDSMSTmhfrsl 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 238 -EAQRKALAE-QSEI--IQAQLANRKQKLESVELSSQSEIQHL-NSKLERAKDTICANELEIERLNIRVN------DLMG 306
Cdd:pfam15921 219 gSAISKILRElDTEIsyLKGRIFPVEDQLEALKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASsarsqaNSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 307 TNMTILQDH--RQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTTlkavgtqqsverPLEDCQKERK 384
Cdd:pfam15921 299 SQLEIIQEQarNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANS------------ELTEARTERD 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 385 YSSPGQGVLDNVLSQL--DFSHSSEEL-LQAEVT-RLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLK 460
Cdd:pfam15921 367 QFSQESGNLDDQLQKLlaDLHKREKELsLEKEQNkRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 461 EQILQADQ----------TYSSALEGMKMEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEI---- 526
Cdd:pfam15921 447 ERQMAAIQgkneslekvsSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLrsrv 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 527 ---LSQLESLKLENHRLSETVMKLE-LGLHEAKEISLADLQENYIEALNKLVS-----------ENQQLQKDLMSTKSEL 591
Cdd:pfam15921 527 dlkLQELQHLKNEGDHLRNVQTECEaLKLQMAEKDKVIEILRQQIENMTQLVGqhgrtagamqvEKAQLEKEINDRRLEL 606
|
570
....*....|....
gi 755531333 592 EHATNMCKKKDGEI 605
Cdd:pfam15921 607 QEFKILKDKKDAKI 620
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-594 |
2.60e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 251 IQAQLANR----KQKLESVELSSQS-EIQHLNSKLERAKDTICANELEIERLNIRVNdlmgtnmTILQDHRQKEEKLRES 325
Cdd:TIGR02168 207 RQAEKAERykelKAELRELELALLVlRLEELREELEELQEELKEAEEELEELTAELQ-------ELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 326 EKLLEALQEEQKELKASLQSQETFILEAKMQEK-LQTTLKAVGTQQSVERPLEDCQKERKYSspgqgvLDNVLSQLDFSH 404
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLAnLERQLEELEAQLEELESKLDELAEELAE------LEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 405 SSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQIlqadqtySSALEGMKMEISQL 484
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL-------EDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 485 TRELHQRDITIASAKCSSSDMEkqlKAEMQKAEEKAVEHKEILSQLeslkLENHRLSETVMKLELGLHEAKEISLADLQE 564
Cdd:TIGR02168 427 LKKLEEAELKELQAELEELEEE---LEELQEELERLEEALEELREE----LEEAEQALDAAERELAQLQARLDSLERLQE 499
|
330 340 350
....*....|....*....|....*....|....*....
gi 755531333 565 N---YIEALNKLVSENQQLQ------KDLMSTKSELEHA 594
Cdd:TIGR02168 500 NlegFSEGVKALLKNQSGLSgilgvlSELISVDEGYEAA 538
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
226-546 |
1.35e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 226 QRLIYQQQVSSLEAQRKALAEQSEIIQAQLAnRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDL- 304
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEALQSARE-KQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEk 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 305 MGTNMTILQDHRQKEEKLRESEKLLEALQeeqKELKASLQSQETFILEAKMQeKLQTTLKAVGT---------------Q 369
Cdd:pfam12128 667 DKKNKALAERKDSANERLNSLEAQLKQLD---KKHQAWLEEQKEQKREARTE-KQAYWQVVEGAldaqlallkaaiaarR 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 370 QSVERPLEDCQKERKYSSPGQGVLDNVLSQLdfshsseellQAEVTRLEGSLESvsatCKQLSQELMEKYEELK-RMEGH 448
Cdd:pfam12128 743 SGAKAELKALETWYKRDLASLGVDPDVIAKL----------KREIRTLERKIER----IAVRRQEVLRYFDWYQeTWLQR 808
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 449 NNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDitiaSAKCSSSDMEKQLKAEMQK---------AEEK 519
Cdd:pfam12128 809 RPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASE----KQQVRLSENLRGLRCEMSKlatlkedanSEQA 884
|
330 340
....*....|....*....|....*..
gi 755531333 520 AVEHKEILSQLESLKLENHRLSETVMK 546
Cdd:pfam12128 885 QGSIGERLAQLEDLKLKRDYLSESVKK 911
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
278-607 |
4.84e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 4.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 278 SKLERAKdticaNELEIERLNIRVNDLmgtnmtILQDHRQKEEKLR-ESEKLlealqEEQKELKASLQSQETFILeAKMQ 356
Cdd:TIGR02169 170 RKKEKAL-----EELEEVEENIERLDL------IIDEKRQQLERLRrEREKA-----ERYQALLKEKREYEGYEL-LKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 357 EKLQTTLKAVGTQ-QSVERPLEDCQKERKYSSPGQGVLDNVLSQLdfSHSSEELLQAEVTRLEGSLESVSATCKQLSQEL 435
Cdd:TIGR02169 233 EALERQKEAIERQlASLEEELEKLTEEISELEKRLEEIEQLLEEL--NKKIKDLGEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 436 MEKYEELKRMEGHNNEYRTEIKKLKEQILQADQtyssALEGMKMEISQLTRELhqrditiasakcssSDMEKQLKAEMQK 515
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELER----EIEEERKRRDKLTEEY--------------AELKEELEDLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 516 AEEKAVEHKE--------------ILSQLESLKLENHRLSETVMKLELGLHEAKEiSLADLqenyIEALNKLVSENQQLQ 581
Cdd:TIGR02169 373 LEEVDKEFAEtrdelkdyreklekLKREINELKRELDRLQEELQRLSEELADLNA-AIAGI----EAKINELEEEKEDKA 447
|
330 340
....*....|....*....|....*.
gi 755531333 582 KDLMSTKSELEHATNMCKKKDGEIFN 607
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYD 473
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
307-605 |
1.20e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 307 TNMTILqdHRQKEekLRESEKLLEALQEEQKELKASLQSqetfiLEAKMQEKLQTTLKAVGTQQSVERPLEDCQKerkys 386
Cdd:TIGR02168 668 TNSSIL--ERRRE--IEELEEKIEELEEKIAELEKALAE-----LRKELEELEEELEQLRKELEELSRQISALRK----- 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 387 spgqgvldnvlsQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQA 466
Cdd:TIGR02168 734 ------------DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 467 DQTYSSAlegmKMEISQLTRELHQRDITIASakcsssdMEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMK 546
Cdd:TIGR02168 802 REALDEL----RAELTLLNEEAANLRERLES-------LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 755531333 547 LELGLHEAKEISlaDLQENYIEALNKLVSENQQLQKDLMSTKSELEHATNMCKKKDGEI 605
Cdd:TIGR02168 871 LESELEALLNER--ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
176-601 |
1.67e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.56 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 176 RLKRSYEKLQ------KKQLREFRGNTK----SFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALA 245
Cdd:pfam05483 216 KLKEDHEKIQhleeeyKKEINDKEKQVSllliQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLT 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 246 EQSEII----QAQLANRKQKLESVELSSQSEIQHLNSK------LERAKDTICANELEIERLNIRVNDLMGTNMTILQDH 315
Cdd:pfam05483 296 KELEDIkmslQRSMSTQKALEEDLQIATKTICQLTEEKeaqmeeLNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKN 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 316 -----------RQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTTLKavGTQQSVERPLEDCQKErk 384
Cdd:pfam05483 376 edqlkiitmelQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELK--GKEQELIFLLQAREKE-- 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 385 ysspgqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSLES-------VSATCKQLSQELMEKYEELKRMEGHNNEYRTEI- 456
Cdd:pfam05483 452 --------IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKeklknieLTAHCDKLLLENKELTQEASDMTLELKKHQEDIi 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 457 --KKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDITIasaKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLK 534
Cdd:pfam05483 524 ncKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV---KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLK 600
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755531333 535 LENHRLSETVMKLElglHEAKEISLADLQENyiEALNKLVSENQQLQKDLMSTKSELEHATNMCKKK 601
Cdd:pfam05483 601 KQIENKNKNIEELH---QENKALKKKGSAEN--KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKE 662
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
203-415 |
2.15e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 203 RSEIERLTGKIEEFRQKS--LDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESV-----ELSSQSEIQH 275
Cdd:COG3206 188 RKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGpdalpELLQSPVIQQ 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 276 LNSKLERAkdticanELEIERLNIRVNDlmgtnmtilqDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFIL--EA 353
Cdd:COG3206 268 LRAQLAEL-------EAELAELSARYTP----------NHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQarEA 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755531333 354 KMQEKLQTTLKAVGTQQSVERPLEdcQKERKYSSpGQGVLDNVLSQLDFSHSSEELLQAEVT 415
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEAELR--RLEREVEV-ARELYESLLQRLEEARLAEALTVGNVR 389
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
212-384 |
2.34e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 212 KIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVelssQSEIQHLNSKLERAKDTI---- 287
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL----QAEIAEAEAEIEERREELgera 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 288 --------CANELE-----------IERLNIrVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQET 348
Cdd:COG3883 93 ralyrsggSVSYLDvllgsesfsdfLDRLSA-LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|....*.
gi 755531333 349 fILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERK 384
Cdd:COG3883 172 -ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELA 206
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
203-463 |
4.45e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 4.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 203 RSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEI---------IQAQLANRKQKLESVELSSqSEI 273
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASS-DDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 274 QHLNSKLERAkdticanELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQK-----ELKASLQSQET 348
Cdd:COG4913 688 AALEEQLEEL-------EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelraLLEERFAAALG 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 349 FILEAKMQEKLQTTLKAVGTQQS-VERPLEDCQKE--RKYSSPGQGVLDNVLSQLDFshsseellQAEVTRLEGSlesvs 425
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNrAEEELERAMRAfnREWPAETADLDADLESLPEY--------LALLDRLEED----- 827
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 755531333 426 atckqlsqELMEKYEELKRMEGHNN---------EYRTEIKKLKEQI 463
Cdd:COG4913 828 --------GLPEYEERFKELLNENSiefvadllsKLRRAIREIKERI 866
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
89-296 |
4.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 4.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 89 EAELQELMKQIDIM------VAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAME 162
Cdd:COG4942 26 EAELEQLQQEIAELekelaaLKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 163 YkeellklqeelSRLKRSYEKLQKKQLREFRGNTKSF--------------REDRSEIERLTGKIEEFRQKSLDWEKQRL 228
Cdd:COG4942 106 L-----------AELLRALYRLGRQPPLALLLSPEDFldavrrlqylkylaPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755531333 229 IYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLEsvelSSQSEIQHLNSKLERAKDTICANELEIER 296
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELA----ELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
185-590 |
6.83e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 6.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 185 QKKQLREFRGNTKS----FREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLAnrkq 260
Cdd:PRK02224 228 QREQARETRDEADEvleeHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG---- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 261 kLESVELSSQSEIQhlnSKLERAKDTiCANELEIERLNIrvndlmgtnmtilQDHRQKEEKLRESEKLLEA----LQEEQ 336
Cdd:PRK02224 304 -LDDADAEAVEARR---EELEDRDEE-LRDRLEECRVAA-------------QAHNEEAESLREDADDLEEraeeLREEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 337 KELKASLQSQETFIleakmqEKLQTTLKAVGTQ-QSVERPLEDCQKERKYSspgQGVLDNVLSQLDFSHSSEELLQAEVT 415
Cdd:PRK02224 366 AELESELEEAREAV------EDRREEIEELEEEiEELRERFGDAPVDLGNA---EDFLEELREERDELREREAELEATLR 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 416 RLEGSLESVSA--------TCKQLSQE------LMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSA--LEGMKM 479
Cdd:PRK02224 437 TARERVEEAEAlleagkcpECGQPVEGsphvetIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEdrIERLEE 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 480 EISQLTRELHQRDITIA--SAKCSSSDMEKQ-LKAEMQKAEEKAVE-HKEILSQLESLKLENHRLSETVMKLElglHEAK 555
Cdd:PRK02224 517 RREDLEELIAERRETIEekRERAEELRERAAeLEAEAEEKREAAAEaEEEAEEAREEVAELNSKLAELKERIE---SLER 593
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 755531333 556 EISLADLQENYIEALNKLVSENQQLQ------KDLMSTKSE 590
Cdd:PRK02224 594 IRTLLAAIADAEDEIERLREKREALAelnderRERLAEKRE 634
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
218-592 |
1.23e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 218 QKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQSEiqhlnsKLERAKDTICANELEIERL 297
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAA------PLAAHIKAVTQIEQQAQRI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 298 NIRVNDLMGTNMTIL---QDHRQKEEKLRESEKLLEALQEEQKELkASLQSQETFILEAKMQEKlqTTLKAVGTQQSVER 374
Cdd:TIGR00618 313 HTELQSKMRSRAKLLmkrAAHVKQQSSIEEQRRLLQTLHSQEIHI-RDAHEVATSIREISCQQH--TLTQHIHTLQQQKT 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 375 PLEDcqkERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNE--- 451
Cdd:TIGR00618 390 TLTQ---KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQEsaq 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 452 -YRTEIKKL--KEQILQADQTYSSALEGMKMEISQLTREL---------HQRDITIASAKCSSSDMEKQLKAEMQKAEEK 519
Cdd:TIGR00618 467 sLKEREQQLqtKEQIHLQETRKKAVVLARLLELQEEPCPLcgscihpnpARQDIDNPGPLTRRMQRGEQTYAQLETSEED 546
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755531333 520 aVEHK--EILSQLESLKLENHRLSETVMKLELGLHEAKEIslADLQENYIEALNKLVSENQQLQKDLMSTKSELE 592
Cdd:TIGR00618 547 -VYHQltSERKQRASLKEQMQEIQQSFSILTQCDNRSKED--IPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
145-384 |
3.12e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 145 LHQQIEEHEKTKQEMAmeykeellKLQEELSRLKRSYEKLQKKQlrefrgntksfREDRSEIERLTGKIEEFRQKSLDWE 224
Cdd:COG4942 15 AAAQADAAAEAEAELE--------QLQQEIAELEKELAALKKEE-----------KALLKQLAALERRIAALARRIRALE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 225 KQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESveLSSQSEIQHLNSKlerakdticANELEIERLNIRVNDL 304
Cdd:COG4942 76 QELAALEAELAELEKEIAELRAELEAQKEELAELLRALYR--LGRQPPLALLLSP---------EDFLDAVRRLQYLKYL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 305 MGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETfILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERK 384
Cdd:COG4942 145 APARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA-ALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
87-353 |
3.61e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 87 SCEAELQELMKQIDIMVAhKKSEWEgqthALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEE 166
Cdd:COG4913 665 SAEREIAELEAELERLDA-SSDDLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 167 LLKLQEELSRL--KRSYEKLQKKQLREFRGN-TKSFREDRSEIERLTGKIEE-FRQKSLDWekqRLIYQQQVSSLEAQRK 242
Cdd:COG4913 740 EDLARLELRALleERFAAALGDAVERELRENlEERIDALRARLNRAEEELERaMRAFNREW---PAETADLDADLESLPE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 243 ALAEQSEIIQAQLANRKQKL-ESVELSSQSEIQHLNSKLERAKDTIcanELEIERLNirvndlmgtnmTILQDHRQKEE- 320
Cdd:COG4913 817 YLALLDRLEEDGLPEYEERFkELLNENSIEFVADLLSKLRRAIREI---KERIDPLN-----------DSLKRIPFGPGr 882
|
250 260 270
....*....|....*....|....*....|....*
gi 755531333 321 --KLRESEKLLEALQEEQKELKASLQSQETFILEA 353
Cdd:COG4913 883 ylRLEARPRPDPEVREFRQELRAVTSGASLFDEEL 917
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
180-499 |
5.44e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 180 SYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRK 259
Cdd:COG4372 14 SLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 260 QKLESvelsSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKEL 339
Cdd:COG4372 94 AELAQ----AQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAAL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 340 KASLQSQETFILEAKMQEKLQTTLKAVGTQQ---SVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTR 416
Cdd:COG4372 170 EQELQALSEAEAEQALDELLKEANRNAEKEEelaEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKE 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 417 LEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDITIA 496
Cdd:COG4372 250 ELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLE 329
|
...
gi 755531333 497 SAK 499
Cdd:COG4372 330 LAL 332
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
123-479 |
5.77e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 123 IRDRELKALRSQLDMKHKEVGILHQQIEEHEKTK---QEMAMEYKEELLKLQEELSRLKRSYEKLQKKQLREFRGNtksf 199
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKeqaKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL---- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 200 REDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEaqrKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHLNSK 279
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ---EEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 280 LERAKDTICANELEIERLNIRvndlmgtnMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKL 359
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKE--------LKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 360 QTTLKAVGTQQSVERPLEdcqkerkysspgqgVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKY 439
Cdd:pfam02463 395 EELELKSEEEKEAQLLLE--------------LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 755531333 440 EELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKM 479
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQ 500
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
200-346 |
5.89e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 200 REDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVelSSQSEIQHLNSK 279
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV--RNNKEYEALQKE 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755531333 280 LERAKDTICANELEIERLNIRVNdlmgtnmtilqdhrQKEEKLRESEKLLEALQEEQKELKASLQSQ 346
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIE--------------ELEEELAELEAELAELEAELEEKKAELDEE 150
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
90-503 |
8.77e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 8.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 90 AELQELMKQIDIMVA---HKKSEWEGQTHALETCldirdrelKALRSQLDMKHKEVGILHQQIE-------EHEKTKQEM 159
Cdd:pfam15921 517 AEITKLRSRVDLKLQelqHLKNEGDHLRNVQTEC--------EALKLQMAEKDKVIEILRQQIEnmtqlvgQHGRTAGAM 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 160 AMEYKEELLKLQEELSRLKRsYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEA 239
Cdd:pfam15921 589 QVEKAQLEKEINDRRLELQE-FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN 667
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 240 QRKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDT---------------------ICANELEIERLN 298
Cdd:pfam15921 668 ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTlksmegsdghamkvamgmqkqITAKRGQIDALQ 747
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 299 IRVNDL--MGTNMTiLQDHRQKEEKLRESEKL-------------LEALQEEQKELKASLQSQETFILEAKMQEKLQTTL 363
Cdd:pfam15921 748 SKIQFLeeAMTNAN-KEKHFLKEEKNKLSQELstvateknkmageLEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 364 KAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLdfshsseeLLQAEVTRLEGSLESVSATCKQLSQELMeKYEELK 443
Cdd:pfam15921 827 IQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRL--------LQPASFTRTHSNVPSSQSTASFLSHHSR-KTNALK 897
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 444 rmEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSSS 503
Cdd:pfam15921 898 --EDPTRDLKQLLQELRSVINEEPTVQLSKAEDKGRAPSLGALDDRVRDCIIESSLRSDI 955
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
370-592 |
9.26e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 9.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 370 QSVERPLEDCQKERkysSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQ-------LSQELMEKYEEL 442
Cdd:TIGR02169 684 EGLKRELSSLQSEL---RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEleedlssLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 443 KRMEGHNNEYRTEIKKLKEQILQADQTYSSAlegmkmEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVE 522
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEALNDLEARLSHS------RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 523 HKEILSQLESLKLENHRLSETVMKLELGLHEAKEIsladlQENYIEALNKLVSENQQLQKDLMSTKSELE 592
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE-----LEELEAALRDLESRLGDLKKERDELEAQLR 899
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
133-600 |
1.11e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 133 SQLDMKHKEVGILHQQIEEHEKtkqEMAMEYKEELLKLQEELSRLkRSYEKLQKKQLREFRGNTKSFRED----RSEIER 208
Cdd:pfam12128 251 NTLESAELRLSHLHFGYKSDET---LIASRQEERQETSAELNQLL-RTLDDQWKEKRDELNGELSAADAAvakdRSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 209 LTGKIEEFRQKSLDWEKQRL----IYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKlesVELSSQSEIQHLNSKLERAK 284
Cdd:pfam12128 327 LEDQHGAFLDADIETAAADQeqlpSWQSELENLEERLKALTGKHQDVTAKYNRRRSK---IKEQNNRDIAGIKDKLAKIR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 285 DTICANELEIErlnirvNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEA--------KMQ 356
Cdd:pfam12128 404 EARDRQLAVAE------DDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLenfderieRAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 357 EKLQTTLKAVGTQQSVERPL--------EDCQKERKYSSPGQGVLDNVLSQLD-FSHSSEELLQAEVTRLEGSLESVSAT 427
Cdd:pfam12128 478 EEQEAANAEVERLQSELRQArkrrdqasEALRQASRRLEERQSALDELELQLFpQAGTLLHFLRKEAPDWEQSIGKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 428 cKQLSQELMEKYEELKRMEGHNNEYrteikKLKEQILQADQTYSSALEgmkmeiSQLTRELHQRDITIASAKCSSSDMEK 507
Cdd:pfam12128 558 -ELLHRTDLDPEVWDGSVGGELNLY-----GVKLDLKRIDVPEWAASE------EELRERLDKAEEALQSAREKQAAAEE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 508 QLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMKLELGLHEAkeisLADLQENYIEALNKLVSENQQLQKDLMST 587
Cdd:pfam12128 626 QLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKA----LAERKDSANERLNSLEAQLKQLDKKHQAW 701
|
490
....*....|....*...
gi 755531333 588 KSE-----LEHATNMCKK 600
Cdd:pfam12128 702 LEEqkeqkREARTEKQAY 719
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
131-503 |
1.55e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 131 LRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKLqKKQLREFRGNTKSFREDRSEIERLT 210
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAEL-KEELRQSREKHEELEEKYKELSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 211 GKIEEFRQKSLDwekQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQK-----------------LESVELSSQSEI 273
Cdd:pfam07888 111 EELSEEKDALLA---QRAAHEARIRELEEDIKTLTQRVLERETELERMKERakkagaqrkeeeaerkqLQAKLQQTEEEL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 274 QHLNSKLERAKDTICANELEIERLNIRVNDLMGT----------NMTILQDHRQKEEKLRESEKLLEALQEEQKELkASL 343
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKlttahrkeaeNEALLEELRSLQERLNASERKVEGLGEELSSM-AAQ 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 344 QSQETFILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKysspgqgvldNVLSQLDFSHSSEELLQAEVTRLEgsles 423
Cdd:pfam07888 267 RDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERE----------TLQQSAEADKDRIEKLSAELQRLE----- 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 424 vsatcKQLSQELMEKYE---ELKRMEGHN----NEYRTEIKKLKEQiLQADQTYSSALEGMKMEISQLTRELHQRDITIA 496
Cdd:pfam07888 332 -----ERLQEERMEREKlevELGREKDCNrvqlSESRRELQELKAS-LRVAQKEKEQLQAEKQELLEYIRQLEQRLETVA 405
|
....*..
gi 755531333 497 SAKCSSS 503
Cdd:pfam07888 406 DAKWSEA 412
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
98-558 |
2.31e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 98 QIDIMVAHKKSEWEGQTHALE--------TCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLK 169
Cdd:TIGR00618 423 QGQLAHAKKQQELQQRYAELCaaaitctaQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEE 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 170 LQEELSRLKRSYEKLQkkQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSE 249
Cdd:TIGR00618 503 PCPLCGSCIHPNPARQ--DIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDN 580
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 250 IIQAQLANRKQKLEsvelssqsEIQHLNSKLERAKDTI-CANELEIERLNIRVNDLmgtnmTILQDHRQKEeklresekl 328
Cdd:TIGR00618 581 RSKEDIPNLQNITV--------RLQDLTEKLSEAEDMLaCEQHALLRKLQPEQDLQ-----DVRLHLQQCS--------- 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 329 lealQEEQKELKASLQSQETFILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEE 408
Cdd:TIGR00618 639 ----QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIE 714
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 409 LLQAEVTRLEGSLESVSATCKQ---LSQELMEKYEELKRMEGHNNEYRTEIKKLKEQI-LQADQTYSSALEGMKMEISQL 484
Cdd:TIGR00618 715 EYDREFNEIENASSSLGSDLAAredALNQSLKELMHQARTVLKARTEAHFNNNEEVTAaLQTGAELSHLAAEIQFFNRLR 794
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755531333 485 TRELHQRDITIASAKCSSSDMEKQLKAE---MQKAEEKAVEHKEILSQ-LESLKLENHRLSETVMKLELGLHEAKEIS 558
Cdd:TIGR00618 795 EEDTHLLKTLEAEIGQEIPSDEDILNLQcetLVQEEEQFLSRLEEKSAtLGEITHQLLKYEECSKQLAQLTQEQAKII 872
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
178-564 |
2.91e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 178 KRSYEKLqKKQLREFRGNTKSFREDRSEIERLTGKIEEFR--QKSLDWEKQRLIYQQQV--SSLEAQRKALAEQSEIIQA 253
Cdd:PRK01156 345 KSRYDDL-NNQILELEGYEMDYNSYLKSIESLKKKIEEYSknIERMSAFISEILKIQEIdpDAIKKELNEINVKLQDISS 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 254 QLANRKQKLESVeLSSQSEIQHLNSKLE-RAKDTICANELEIERLNIRVNDLMgtnmtilQDHRQKEEKLRESEKLLEAL 332
Cdd:PRK01156 424 KVSSLNQRIRAL-RENLDELSRNMEMLNgQSVCPVCGTTLGEEKSNHIINHYN-------EKKSRLEEKIREIEIEVKDI 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 333 QEEQKELKASLQSqetfiLEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQL---DFSHSSEEL 409
Cdd:PRK01156 496 DEKIVDLKKRKEY-----LESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLkleDLDSKRTSW 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 410 LQAEVTRLEGSLESVSATCKQLSQEL----------------MEKYEE--LKRMEGHNNEYRTEIKKLKEQILQADqTYS 471
Cdd:PRK01156 571 LNALAVISLIDIETNRSRSNEIKKQLndlesrlqeieigfpdDKSYIDksIREIENEANNLNNKYNEIQENKILIE-KLR 649
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 472 SALEGMKMEISQLtRELHQRDITIASAKCSSSDMEKQLKAEMQKAEekaVEHKEILSQLESLKLENHRLSETVMKLELGL 551
Cdd:PRK01156 650 GKIDNYKKQIAEI-DSIIPDLKEITSRINDIEDNLKKSRKALDDAK---ANRARLESTIEILRTRINELSDRINDINETL 725
|
410
....*....|....*
gi 755531333 552 HEAKEI--SLADLQE 564
Cdd:PRK01156 726 ESMKKIkkAIGDLKR 740
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
145-551 |
2.97e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.88 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 145 LHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKlQKKQLREFRGNTKSFREDRSEIER-LTGKIEEFRQKSLDW 223
Cdd:pfam05557 7 SKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDR-ESDRNQELQKRIRLLEKREAEAEEaLREQAELNRLKKKYL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 224 EKQRLIYQQQVSSLE-------AQRKALAEQSEIIQ-AQLANRKQKLESVELSSQSEIQH--------LNSKLERAKDTI 287
Cdd:pfam05557 86 EALNKKLNEKESQLAdarevisCLKNELSELRRQIQrAELELQSTNSELEELQERLDLLKakaseaeqLRQNLEKQQSSL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 288 CANELEIERLnIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQEtfILEAK---MQEKLQTTLK 364
Cdd:pfam05557 166 AEAEQRIKEL-EFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKL--LLKEEvedLKRKLEREEK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 365 AVGTQQSVERPLEDCQKERK-YSSPGQGVLDNVLSQLDFSHSSEELLQ------AEVTRLEGSLESVSATCKQLSQELME 437
Cdd:pfam05557 243 YREEAATLELEKEKLEQELQsWVKLAQDTGLNLRSPEDLSRRIEQLQQreivlkEENSSLTSSARQLEKARRELEQELAQ 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 438 KYEELKRMEGHNNEYRTEIKKLKEQILQADQ-------------------TYSSALEGMKMEISQLTRELH--------- 489
Cdd:pfam05557 323 YLKKIEDLNKKLKRHKALVRRLQRRVLLLTKerdgyrailesydkeltmsNYSPQLLERIEEAEDMTQKMQahneemeaq 402
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755531333 490 ----QRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEILS---QLESLKLENHRLSETVMKLELGL 551
Cdd:pfam05557 403 lsvaEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSlrrKLETLELERQRLREQKNELEMEL 471
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
162-474 |
2.98e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 162 EYKEELLKLQEELSRLKRSYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIyqqqvssleaqR 241
Cdd:COG5185 240 DPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDI-----------K 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 242 KALAEQSEIIQAQLANrkQKLESVELSSQSEIQHLNSKLERAKDTIcanELEIERLNIRVNDLMGTNmtilqDHRQKEEK 321
Cdd:COG5185 309 KATESLEEQLAAAEAE--QELEESKRETETGIQNLTAEIEQGQESL---TENLEAIKEEIENIVGEV-----ELSKSSEE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 322 LRESEKLLEALQEEQKELKASLQSQETFILEAkmqekLQTTLKAVGTQ-QSVERPLEdcQKERKYSSPGQgVLDNVLSQL 400
Cdd:COG5185 379 LDSFKDTIESTKESLDEIPQNQRGYAQEILAT-----LEDTLKAADRQiEELQRQIE--QATSSNEEVSK-LLNELISEL 450
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755531333 401 DFS-HSSEELLQAEVTrlegslESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSAL 474
Cdd:COG5185 451 NKVmREADEESQSRLE------EAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKL 519
|
|
| Gp58 |
pfam07902 |
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ... |
306-506 |
3.20e-03 |
|
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.
Pssm-ID: 369586 [Multi-domain] Cd Length: 594 Bit Score: 40.71 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 306 GTNMTILQDHRQKEEKLRES-EKLLEALQEEQKELKASLQSQETFILEAKMQEK--LQTTLKAVGTQQSVERPLEDCQKE 382
Cdd:pfam07902 132 GIATRISEDTDKKLALINETiSGIRREYQDADRQLSSSYQAGIEGLKATMASDKigLQAEIQASAQGLSQRYDNEIRKLS 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 383 RKYSSPGQGVLDNVLSQLD-----FSHSSEELLQAEVTRLEGSLESVSATCKQLSQelmekyeELKRMEGHNNEYRTEIK 457
Cdd:pfam07902 212 AKITTTSSGTTEAYESKLDdlraeFTRSNQGMRTELESKISGLQSTQQSTAYQISQ-------EISNREGAVSRVQQDLD 284
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 755531333 458 KLKEQILQADQTYSS---ALEGMKMEISQLTRELHQRDITIA---SAKCSSSDME 506
Cdd:pfam07902 285 SYQRRLQDAEKNYSSltqTVKGLQSTVSDPNSKLESRITQLAgliEQKVTRGDVE 339
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
129-602 |
3.29e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 129 KALRSQLDMKHKEVGILHQQIEEHEKTKQ--EMAMEYKEELLKLQEELSRLKRSYEKLQKKQLREFRGNTKSFREDRSEI 206
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEakKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 207 ERLTGKIEEFRQKsldwEKQRLIYQQQVSSLEAQRKAL-AEQSEIIQAQLANRKQKLEsvELSSQSEIQHLNSKLERAKD 285
Cdd:PTZ00121 1447 DEAKKKAEEAKKA----EEAKKKAEEAKKADEAKKKAEeAKKADEAKKKAEEAKKKAD--EAKKAAEAKKKADEAKKAEE 1520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 286 TICANELEIERLNIRVNDLMGTnmtilqDHRQKEEKLRESEKLLEAlqEEQKELKASLQSQETFILEAKMQEKLQTTLKA 365
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKADEAKKA------EEKKKADELKKAEELKKA--EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 366 vgtqqSVERPLEDCQKERKYSSPgqgvldnvlsqlDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRM 445
Cdd:PTZ00121 1593 -----RIEEVMKLYEEEKKMKAE------------EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA 1655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 446 EGHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRElhqrditiASAKCSSSDMEKQLKAEMQKAEEKAVEHKE 525
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--------AEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755531333 526 ILSQLESLKLENHRlsETVMKLELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLMSTKSELEHATNMCKKKD 602
Cdd:PTZ00121 1728 NKIKAEEAKKEAEE--DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
176-359 |
3.55e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.88 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 176 RLKRSYEKLQkkqlREFRGNTKSFREDRSEIER----LTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAE----- 246
Cdd:pfam05557 6 ESKARLSQLQ----NEKKQMELEHKRARIELEKkasaLKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAElnrlk 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 247 -QSEIIQAQLANRK----QKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRvNDLMGTNMtilQDHRQKEEK 321
Cdd:pfam05557 82 kKYLEALNKKLNEKesqlADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQER-LDLLKAKA---SEAEQLRQN 157
|
170 180 190
....*....|....*....|....*....|....*....
gi 755531333 322 LRESEKLLEALQEEQKELKASLQSQETFILEAK-MQEKL 359
Cdd:pfam05557 158 LEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKnSKSEL 196
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
46-592 |
3.81e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.58 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 46 NKEDLEMEALLEGIQNRGHSGRNHLGmscDWSVGACRGFLTSCEAELQELMKQIDIMVAHKKSEWEGQTHALETcldirD 125
Cdd:pfam10174 154 GARDESIKKLLEMLQSKGLPKKSGEE---DWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPD-----P 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 126 RELKALRSQLDMKHKEVGILHQQIEEHEktkQEMAMEYKEELLKLQEELSRLK-----RSYEKLQKKQLREFRgntKSFR 200
Cdd:pfam10174 226 AKTKALQTVIEMKDTKISSLERNIRDLE---DEVQMLKTNGLLHTEDREEEIKqmevyKSHSKFMKNKIDQLK---QELS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 201 EDRSEIERLTGKIEEFRQKSLDWE------KQRLIYQQQVSS-LEAQRKALAEQSEIIQAQLANRKQKLESVelssQSEI 273
Cdd:pfam10174 300 KKESELLALQTKLETLTNQNSDCKqhievlKESLTAKEQRAAiLQTEVDALRLRLEEKESFLNKKTKQLQDL----TEEK 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 274 QHLNSKLERAKDTICANELEIERLNIRVNDLmgtnmtilqdhrqkEEKLRESEKLLEALQEEQKELKASLQSQETFI--L 351
Cdd:pfam10174 376 STLAGEIRDLKDMLDVKERKINVLQKKIENL--------------QEQLRDKDKQLAGLKERVKSLQTDSSNTDTALttL 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 352 EAKMQEKlqttlkavgtqqsvERPLEDCQKERkySSPGQGVLDNVLSQLDFSHSSEE---LLQAEVTRLEGSLESVSATC 428
Cdd:pfam10174 442 EEALSEK--------------ERIIERLKEQR--EREDRERLEELESLKKENKDLKEkvsALQPELTEKESSLIDLKEHA 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 429 KQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSalEGMKMEISQLTRELHQRDITIA--SAKCsSSDME 506
Cdd:pfam10174 506 SSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEA--VRTNPEINDRIRLLEQEVARYKeeSGKA-QAEVE 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 507 KQLKAEMQKAEEKAVEHKEIlSQLESLKLENHR-LSETVMKLELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLM 585
Cdd:pfam10174 583 RLLGILREVENEKNDKDKKI-AELESLTLRQMKeQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELM 661
|
570
....*....|.
gi 755531333 586 S----TKSELE 592
Cdd:pfam10174 662 GalekTRQELD 672
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
313-622 |
4.14e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 313 QDHRQKEEKLRESEKLLEALQEEQKELKasLQSQETFILEAKMQEKLQTTLKAVGTQQSVERPLED------CQKERKYS 386
Cdd:TIGR00606 613 ELESKEEQLSSYEDKLFDVCGSQDEESD--LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENqsccpvCQRVFQTE 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 387 SPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQA 466
Cdd:TIGR00606 691 AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 467 DQTYSSALEGMK-----------MEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKL 535
Cdd:TIGR00606 771 ETLLGTIMPEEEsakvcltdvtiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 536 ENHRLSETVMKL-----ELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLMSTKSELEHATNMCKKKDGEIFNPAH 610
Cdd:TIGR00606 851 LIQDQQEQIQHLksktnELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930
|
330
....*....|..
gi 755531333 611 SRAAGFKNAELK 622
Cdd:TIGR00606 931 SKETSNKKAQDK 942
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
229-498 |
4.14e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 229 IYQQQvsSLEAQRKALAEQSEIIQAQLANRKQKLESVElssqseiqhlnsklerakdticaNELEIERLNIRVNDLMGTN 308
Cdd:COG3206 160 AYLEQ--NLELRREEARKALEFLEEQLPELRKELEEAE-----------------------AALEEFRQKNGLVDLSEEA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 309 MTILQdhrqkeeKLRESEKLLEALQEEQKELKASLQSqetfiLEAKMQEKLQT--TLKAVGTQQSVERPLEDCQKE---- 382
Cdd:COG3206 215 KLLLQ-------QLSELESQLAEARAELAEAEARLAA-----LRAQLGSGPDAlpELLQSPVIQQLRAQLAELEAElael 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 383 RKYSSPGQGVLDNVLSQLDfshSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQ 462
Cdd:COG3206 283 SARYTPNHPDVIALRAQIA---ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
250 260 270
....*....|....*....|....*....|....*.
gi 755531333 463 ILQADQTYSSALEgmKMEISQLTRELHQRDITIASA 498
Cdd:COG3206 360 VEVARELYESLLQ--RLEEARLAEALTVGNVRVIDP 393
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
115-287 |
4.18e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 115 HALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKLqkkqlrefrG 194
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL---------G 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 195 NTKSFREdrseIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQSEIQ 274
Cdd:COG1579 84 NVRNNKE----YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELE 159
|
170
....*....|...
gi 755531333 275 HLNSKLERAKDTI 287
Cdd:COG1579 160 ELEAEREELAAKI 172
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
89-592 |
4.27e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 89 EAELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEykeell 168
Cdd:pfam01576 52 ETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLE------ 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 169 kLQEELSRLKrsyeKLQKKQLREFRGNTKSFREDRSEIERL---TGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKala 245
Cdd:pfam01576 126 -KVTTEAKIK----KLEEDILLLEDQNSKLSKERKLLEERIsefTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLK--- 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 246 eQSEIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRES 325
Cdd:pfam01576 198 -KEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 326 EKLLEalQEEQKELKASLQSQETFILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSspgqgvldnvlsqldfshs 405
Cdd:pfam01576 277 QEDLE--SERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKA------------------- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 406 seelLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKR-----------MEGHNNEYRTEIKklkeqilqadqtyssAL 474
Cdd:pfam01576 336 ----LEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnkanlekakqaLESENAELQAELR---------------TL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 475 EGMKMEISQLTRELHQRdITIASAKCSSSDMEKQLKAEmqKAEEKAVEHKEILSQLESLKLENHRLSETVMKLELGLHEA 554
Cdd:pfam01576 397 QQAKQDSEHKRKKLEGQ-LQELQARLSESERQRAELAE--KLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510
....*....|....*....|....*....|....*...
gi 755531333 555 KEIsladLQENYIEALNkLVSENQQLQKDLMSTKSELE 592
Cdd:pfam01576 474 QEL----LQEETRQKLN-LSTRLRQLEDERNSLQEQLE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
85-366 |
4.99e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 4.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 85 LTSCEAELQELMKQIDIMVAHKKsEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYK 164
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELA-EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 165 EELLKLQEELSRLKRsyeklQKKQLREFRGNTKSFREDRSEIER-LTGKIEEFRQKSLDWEKQRLIYQQ---QVSSLEAQ 240
Cdd:TIGR02168 835 ATERRLEDLEEQIEE-----LSEDIESLAAEIEELEELIEELESeLEALLNERASLEEALALLRSELEElseELRELESK 909
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 241 RKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIE-----------RLNIRVNDLMGTNM 309
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEddeeearrrlkRLENKIKELGPVNL 989
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 755531333 310 TILQDHRQKEEKLREseklleaLQEEQKELKASLQSQETFILE--AKMQEKLQTTLKAV 366
Cdd:TIGR02168 990 AAIEEYEELKERYDF-------LTAQKEDLTEAKETLEEAIEEidREARERFKDTFDQV 1041
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
145-354 |
5.14e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 145 LHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKLQKKQlREFRGNTKSFREDRSEIERLTGKIEEfRQKSLdwe 224
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE-QELAALEAELAELEKEIAELRAELEA-QKEEL--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 225 kQRLIYQQQVSSLEAQRKALAEQSEIIQAQ---------LANRKQKLESVElSSQSEIQHLNSKLERAKDTICANELEIE 295
Cdd:COG4942 107 -AELLRALYRLGRQPPLALLLSPEDFLDAVrrlqylkylAPARREQAEELR-ADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 755531333 296 RLNIRVNDLMGTNMTILQDHRQKEEKLRESeklLEALQEEQKELKASLQSQETFILEAK 354
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAE---LAELQQEAEELEALIARLEAEAAAAA 240
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
270-546 |
5.59e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 270 QSEIQHLNSKLERAKDTICANELEIERLNIRVNDlmgtnmtILQDHRQKEEKLRESEKllealqeeqkELKASLQSQETF 349
Cdd:PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE-------NIARKQNKYDELVEEAK----------TIKAEIEELTDE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 350 ILEAKMQ-EKLQTTLKAVGTQQS-VERPLEDCQKERKYSSPGqGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLEsvsat 427
Cdd:PHA02562 243 LLNLVMDiEDPSAALNKLNTAAAkIKSKIEQFQKVIKMYEKG-GVCPTCTQQISEGPDRITKIKDKLKELQHSLE----- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 428 ckqlsqELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSalegmkmeisqltrelhqrdiTIASAKcsssdmek 507
Cdd:PHA02562 317 ------KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT---------------------LVDKAK-------- 361
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 755531333 508 QLKAEMQKAEEKAVEHKEILSQL-ESLKLENHRLSETVMK 546
Cdd:PHA02562 362 KVKAAIEELQAEFVDNAEELAKLqDELDKIVKTKSELVKE 401
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
137-381 |
6.02e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 137 MKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKLQ---KKQLREFRGNTKSFREDRSEIERL---- 209
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQaemDRQAAIYAEQERMAMERERELERIrqee 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 210 -TGKIEEFRQKSLDWEKQRLiyqQQVSSLEAQRKALAEQseIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDTIc 288
Cdd:pfam17380 358 rKRELERIRQEEIAMEISRM---RELERLQMERQQKNER--VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEE- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531333 289 ANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESE---KLLEALQEEQKELKASLQSQETFILEAKMQEKLQTTLKA 365
Cdd:pfam17380 432 ARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEeerKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEE 511
|
250
....*....|....*.
gi 755531333 366 VGTQQSVERPLEDCQK 381
Cdd:pfam17380 512 ERKRKLLEKEMEERQK 527
|
|
| |
