|
Name |
Accession |
Description |
Interval |
E-value |
| CEP63 |
pfam17045 |
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole ... |
97-318 |
6.85e-79 |
|
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole activity.
Pssm-ID: 465338 [Multi-domain] Cd Length: 264 Bit Score: 253.59 E-value: 6.85e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 97 LTSCEAELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYK 176
Cdd:pfam17045 1 LSSCEAELQELMKQIDIMVAHKKSEWEGQTRALETRLDIREEELLSARNTLERKHKEIGLLRQQLEELEKGKQELVAKYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 177 E-----------------------------------------ELLKLQEEEFRQKSLDWEKQRLIYQQQVSSLEAQRKAL 215
Cdd:pfam17045 81 QqlqklqeelsklkrsyeklqrkqlkeareeaksreedrselSRLNGKLEEFRQKSLEWEQQRLQYQQQVASLEAQRKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 216 AEQSEIIQA-----QLANRKQKLEsvelSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKE 290
Cdd:pfam17045 161 AEQSSLIQSaayqvQLEGRKQCLE----ASQSEIQRLRSKLERAQDSLCAQELELERLRMRVSELGDSNRKLLEEQQRLL 236
|
250 260
....*....|....*....|....*...
gi 755531339 291 EKLRESEKLLEALQEEQKELKASLQSQE 318
Cdd:pfam17045 237 EELRMSQRQLQVLQNELMELKATLQSQD 264
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-434 |
4.56e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 4.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 136 RDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMA------------MEYKEELLKLQEEEFRQKSLDWEKQRLIYQQ 203
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEeeleqlrkeleeLSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 204 QVSSLEAQRKALAEQSEIIQAQLANRKQKLESVelssQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTIL 283
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEEL----EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 284 QDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFIleAKMQEKLQTTLKAVgtqQSVERPLEDCQKERKYSSPGQGV 363
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI--EELESELEALLNER---ASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755531339 364 LDNVLSQLDFSHsseELLQAEVTRLEGSLESVSATCKQLSQELMEKYE-ELKRMEGHNNEYRTEIKKLKEQI 434
Cdd:TIGR02168 906 LESKRSELRREL---EELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRL 974
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
138-459 |
6.02e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 6.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 138 RELKALRSQLDMKHKEVGILHQQIEEHEKTKqEMAMEYKEELLKLQEEEFRQKSLDW---EKQRLIYQQQVSSLEAQRKA 214
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRRER-EKAERYQALLKEKREYEGYELLKEKealERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 215 LAEQSEIIQAQLANRKQKLESVE-----------LSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTIL 283
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNkkikdlgeeeqLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 284 QDHRQKEEKLRESEKLLEALQEEQKELKASLQsqetfILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERkysSPGQGV 363
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELE-----DLRAELEEVDKEFAETRDELKDYREKLEKLKREI---NELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 364 LDNVLSQLDFSHSSEELLQAEVTRLEGSLesvsatcKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSS 443
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEAKI-------NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
330
....*....|....*.
gi 755531339 444 alegMKMEISQLTREL 459
Cdd:TIGR02169 481 ----VEKELSKLQREL 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
203-534 |
3.12e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 3.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 203 QQVSSLEAQR------KALAEQSEIIQAQLA---------------NRKQKLESVELSSQSEIQHLNSKLERAKDTICAN 261
Cdd:COG1196 200 RQLEPLERQAekaeryRELKEELKELEAELLllklreleaeleeleAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 262 ELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTTLkavgtqq 341
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE------- 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 342 sverpLEDCQKERKysspgqgvldnvlsqldfshSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNN 421
Cdd:COG1196 353 -----LEEAEAELA--------------------EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 422 EyRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQL 501
Cdd:COG1196 408 A-EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350
....*....|....*....|....*....|...
gi 755531339 502 ESLKLENHRLSETVMKLELGLHEAKEISLADLQ 534
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
63-434 |
1.59e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 63 EMEALLEGIQNRGHSGRNHlgmscdwsVGACRGFLTSCEAELQELMKQIDiMVAHKKSEWEGQTHALETCLDIRDRELKA 142
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENR--------LDELSQELSDASRKIGEIEKEIE-QLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 143 LRSQLDMKHKEVGILHQQIEEHEKTKQEMameykeellklqeeefrQKSLDWEKQRLIyQQQVSSLEAQRKALAEQSEII 222
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDL-----------------EARLSHSRIPEI-QAELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 223 QAQLANRKQKLESVElssqSEIQHLNSKLERAKDTICANELEIERLNIRVNDLmgtnmtiLQDHRQKEEKLRESEKLLEA 302
Cdd:TIGR02169 818 EQKLNRLTLEKEYLE----KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL-------EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 303 LQEEQKELKASLQSQETFILEAKMQ----EKLQTTLKA-VGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDfshss 377
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQiekkRKRLSELKAkLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQ----- 961
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 755531339 378 eellqaEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQI 434
Cdd:TIGR02169 962 ------RVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
142-572 |
1.78e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 142 ALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEEEFRQKSLDWEKQ------RLIYQQQVSSLEAQRKAL 215
Cdd:pfam05483 96 SIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNatrhlcNLLKETCARSAEKTKKYE 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 216 AEQSEIIQA--QLANRKQKLESV--ELSSQSEIQHLNSKLERAKDTICANELEiERLNIRVNDLMGTNMTILQDHRQKEE 291
Cdd:pfam05483 176 YEREETRQVymDLNNNIEKMILAfeELRVQAENARLEMHFKLKEDHEKIQHLE-EEYKKEINDKEKQVSLLLIQITEKEN 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 292 KLRESEKLLEALQEE--QKELKASLQSQETFILEAKMQ------EKLQTTL-KAVGTQQSVERPL-----------EDCQ 351
Cdd:pfam05483 255 KMKDLTFLLEESRDKanQLEEKTKLQDENLKELIEKKDhltkelEDIKMSLqRSMSTQKALEEDLqiatkticqltEEKE 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 352 KERKYSSPGQGVLDNVLSQLDFSHSS-EELLQAEVTRLEGSLESVsatcKQLSQELMEKYEELKRMEGHNNEYRTEIKKL 430
Cdd:pfam05483 335 AQMEELNKAKAAHSFVVTEFEATTCSlEELLRTEQQRLEKNEDQL----KIITMELQKKSSELEEMTKFKNNKEVELEEL 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 431 KeQILQADQTY----------SSALEGMKMEISQL----TRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKE 496
Cdd:pfam05483 411 K-KILAEDEKLldekkqfekiAEELKGKEQELIFLlqarEKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIE 489
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755531339 497 ILSQLESLKLENHRLSETV--MKLELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLMSTKSELEHATNMCKKK 572
Cdd:pfam05483 490 LTAHCDKLLLENKELTQEAsdMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCK 567
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
201-554 |
3.56e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 201 YQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVEL---SSQSEIQHLNSKLERAKDTICANELEIERLNIR----VN 273
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLevsELEEEIEELQKELYALANEISRLEQQKQILRERlanlER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 274 DLMGTNMTILQDHRQKEEKlresEKLLEALQEEQKELKASLQSqetfiLEAKMQEKlqttlkaVGTQQSVERPLEDCQKE 353
Cdd:TIGR02168 317 QLEELEAQLEELESKLDEL----AEELAELEEKLEELKEELES-----LEAELEEL-------EAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 354 rkysspgqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYR-TEIKKLKE 432
Cdd:TIGR02168 381 ----------LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 433 QILQADQTYSSALEGMKMEISQLTRELHQ--RDITIASAKCSSsdmekqLKAEMQKAEEKAVEHKEILSQLESLKLENHR 510
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAaeRELAQLQARLDS------LERLQENLEGFSEGVKALLKNQSGLSGILGV 524
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 755531339 511 LSEtVMKLELGLHEAKEISLAdlqenyiEALNKLVSENQQLQKD 554
Cdd:TIGR02168 525 LSE-LISVDEGYEAAIEAALG-------GRLQAVVVENLNAAKK 560
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
204-564 |
3.84e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 204 QVSSLEAQRKAlAEQSEIIQAQL--------ANRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRvndl 275
Cdd:TIGR02168 201 QLKSLERQAEK-AERYKELKAELrelelallVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE---- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 276 mgtnmtilqdHRQKEEKLRESEKLLEALQEEQKELKASLQsqetfILEAKMQEkLQTTLKAVGTQqsverpledcqkerk 355
Cdd:TIGR02168 276 ----------VSELEEEIEELQKELYALANEISRLEQQKQ-----ILRERLAN-LERQLEELEAQ--------------- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 356 ysspgqgvLDNVLSQLDfshsseeLLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIkklkeqil 435
Cdd:TIGR02168 325 --------LEELESKLD-------ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL-------- 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 436 qadQTYSSALEGMKMEISQLTRELHQRDITIAsakcSSSDMEKQLKAEMQKAEEKAVEH--KEILSQLESLKLENHRLSE 513
Cdd:TIGR02168 382 ---ETLRSKVAQLELQIASLNNEIERLEARLE----RLEDRRERLQQEIEELLKKLEEAelKELQAELEELEEELEELQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 755531339 514 tvmklELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLMSTKSELEH 564
Cdd:TIGR02168 455 -----ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
101-576 |
5.83e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 5.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 101 EAELQELMKQIDIMVAHKKSEWEGQ----------THALETCLDIRDRELKALRSQLDMkhkevgiLHQQIEEHEKTKQE 170
Cdd:pfam15921 116 QTKLQEMQMERDAMADIRRRESQSQedlrnqlqntVHELEAAKCLKEDMLEDSNTQIEQ-------LRKMMLSHEGVLQE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 171 MAMEYKEELLKLQEEEFRQKSLdwekQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHL-NS 249
Cdd:pfam15921 189 IRSILVDFEEASGKKIYEHDSM----STMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLlQQ 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 250 KLERAKDTICANELEIERLNIRVN------DLMGTNMTILQDH--RQKEEKLRESEKLLEALQEEQKELKASLQSQETFI 321
Cdd:pfam15921 265 HQDRIEQLISEHEVEITGLTEKASsarsqaNSIQSQLEIIQEQarNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 322 LEAKMQEKLQTTlkavgtqqsverPLEDCQKERKYSSPGQGVLDNVLSQL--DFSHSSEEL-LQAEVT-RLEGSLESVSA 397
Cdd:pfam15921 345 EELEKQLVLANS------------ELTEARTERDQFSQESGNLDDQLQKLlaDLHKREKELsLEKEQNkRLWDRDTGNSI 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 398 TCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQ----------TYSSALEGMKMEISQLTRELHQRDITIA 467
Cdd:pfam15921 413 TIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgkneslekvsSLTAQLESTKEMLRKVVEELTAKKMTLE 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 468 SAKCSSSDMEKQLKAEMQKAEEKAVEHKEI-------LSQLESLKLENHRLSETVMKLE-LGLHEAKEISLADLQENYIE 539
Cdd:pfam15921 493 SSERTVSDLTASLQEKERAIEATNAEITKLrsrvdlkLQELQHLKNEGDHLRNVQTECEaLKLQMAEKDKVIEILRQQIE 572
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 755531339 540 ALNKLVS-----------ENQQLQKDLMSTKSELEHATNMCKKKDGEI 576
Cdd:pfam15921 573 NMTQLVGqhgrtagamqvEKAQLEKEINDRRLELQEFKILKDKKDAKI 620
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
103-397 |
6.20e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 6.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 103 ELQELMKQIDIMVAHKKSEW-EGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLK 181
Cdd:COG1196 217 ELKEELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 182 LQEEefrQKSLDWEKQRLI-YQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDTIcA 260
Cdd:COG1196 297 LARL---EQDIARLEERRReLEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE-A 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 261 NELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESE----KLLEALQEEQKELKASLQSQETFILEAKM--QEKLQTTL 334
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEeallERLERLEEELEELEEALAELEEEEEEEEEalEEAAEEEA 452
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755531339 335 KAVGTQQSVERPLEDCQKERKYsspGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSA 397
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAAL---LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
101-402 |
6.50e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 6.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 101 EAELQELMKQIDIMVAhKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQI-----EEHEKTKQEMAMEY 175
Cdd:TIGR02169 222 EYEGYELLKEKEALER-QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgeEEQLRVKEKIGELE 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 176 KEELLKLQEEEFRQKSL-DWEKQRLIYQQQVSSLEAQRKALAEQSEIIQ---AQLANRKQKLESVELSSQSEIQHLNSKL 251
Cdd:TIGR02169 301 AEIASLERSIAEKERELeDAEERLAKLEAEIDKLLAEIEELEREIEEERkrrDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 252 ERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLqsqETFILEAKMQE-KL 330
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK---EDKALEIKKQEwKL 457
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755531339 331 QTTLKAVGT-QQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQL 402
Cdd:TIGR02169 458 EQLAADLSKyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
195-444 |
1.24e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 195 EKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVelssQSEIQHLNSKLERAKDTICANELEIERLNIRVND 274
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 275 LMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKmQEKLQTTLKAVGTQQSVERPLEDCQKER 354
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE-AELAEAEEELEELAEELLEALRAAAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 355 KYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQI 434
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
250
....*....|
gi 755531339 435 LQADQTYSSA 444
Cdd:COG1196 480 AELLEELAEA 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
118-374 |
2.84e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 118 KKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEEEFRQKSLD---- 193
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLErqle 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 194 --------WEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQS---EIQHLNSKLERAKDTICANE 262
Cdd:TIGR02168 320 eleaqleeLESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEleeQLETLRSKVAQLELQIASLN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 263 LEIERLNIRVNDLMGTNMTILQDHRQKEEKLRES------------EKLLEALQEEQKELKASLQSQETFILEAkmQEKL 330
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQEIEELLKKLEEAelkelqaeleelEEELEELQEELERLEEALEELREELEEA--EQAL 477
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 755531339 331 QTTLKAVGTQQSVERPLEDCQkeRKYSSPGQGVLDNVLSQLDFS 374
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQ--ENLEGFSEGVKALLKNQSGLS 519
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
135-567 |
5.03e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 5.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 135 IRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAmeykEELLKLQEEEFRQKSLDWEKQRLIYQQQVSSLEAQRKA 214
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE----ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 215 LAEQSEIIQAQLANRKQKLESVElSSQSEIQHLNSKLERAKDTIC-ANELEIERLNIRVNDLmgtnmtilqdhrqkEEKL 293
Cdd:COG4717 144 LPERLEELEERLEELRELEEELE-ELEAELAELQEELEELLEQLSlATEEELQDLAEELEEL--------------QQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 294 RESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTT--LKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQL 371
Cdd:COG4717 209 AELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 372 DFSHSSEELLQAEVTRLEGSLEsvsATCKQLSQELMEKYeeLKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKmE 451
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQAL---PALEELEEEELEEL--LAALGLPPDLSPEELLELLDRIEELQELLREAEELEE-E 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 452 IsQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMKLELglheakEISLA 531
Cdd:COG4717 363 L-QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEL------EEELE 435
|
410 420 430
....*....|....*....|....*....|....*.
gi 755531339 532 DLQEnyieALNKLVSENQQLQKDLMSTKSELEHATN 567
Cdd:COG4717 436 ELEE----ELEELEEELEELREELAELEAELEQLEE 467
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
197-517 |
9.99e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.53 E-value: 9.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 197 QRLIYQQQVSSLEAQRKALAEQSEIIQAQLAnRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDL- 275
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEALQSARE-KQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEk 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 276 MGTNMTILQDHRQKEEKLRESEKLLEALQeeqKELKASLQSQETFILEAKMQeKLQTTLKAVGT---------------Q 340
Cdd:pfam12128 667 DKKNKALAERKDSANERLNSLEAQLKQLD---KKHQAWLEEQKEQKREARTE-KQAYWQVVEGAldaqlallkaaiaarR 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 341 QSVERPLEDCQKERKYSSPGQGVLDNVLSQLdfshsseellQAEVTRLEGSLESvsatCKQLSQELMEKYEELK-RMEGH 419
Cdd:pfam12128 743 SGAKAELKALETWYKRDLASLGVDPDVIAKL----------KREIRTLERKIER----IAVRRQEVLRYFDWYQeTWLQR 808
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 420 NNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDitiaSAKCSSSDMEKQLKAEMQK---------AEEK 490
Cdd:pfam12128 809 RPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASE----KQQVRLSENLRGLRCEMSKlatlkedanSEQA 884
|
330 340
....*....|....*....|....*..
gi 755531339 491 AVEHKEILSQLESLKLENHRLSETVMK 517
Cdd:pfam12128 885 QGSIGERLAQLEDLKLKRDYLSESVKK 911
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
249-578 |
1.47e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 249 SKLERAKdticaNELEIERLNIRVNDLmgtnmtILQDHRQKEEKLR-ESEKLlealqEEQKELKASLQSQETFILeAKMQ 327
Cdd:TIGR02169 170 RKKEKAL-----EELEEVEENIERLDL------IIDEKRQQLERLRrEREKA-----ERYQALLKEKREYEGYEL-LKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 328 EKLQTTLKAVGTQ-QSVERPLEDCQKERKYSSPGQGVLDNVLSQLdfSHSSEELLQAEVTRLEGSLESVSATCKQLSQEL 406
Cdd:TIGR02169 233 EALERQKEAIERQlASLEEELEKLTEEISELEKRLEEIEQLLEEL--NKKIKDLGEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 407 MEKYEELKRMEGHNNEYRTEIKKLKEQILQADQtyssALEGMKMEISQLTRELhqrditiasakcssSDMEKQLKAEMQK 486
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELER----EIEEERKRRDKLTEEY--------------AELKEELEDLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 487 AEEKAVEHKE--------------ILSQLESLKLENHRLSETVMKLELGLHEAKEiSLADLqenyIEALNKLVSENQQLQ 552
Cdd:TIGR02169 373 LEEVDKEFAEtrdelkdyreklekLKREINELKRELDRLQEELQRLSEELADLNA-AIAGI----EAKINELEEEKEDKA 447
|
330 340
....*....|....*....|....*.
gi 755531339 553 KDLMSTKSELEHATNMCKKKDGEIFN 578
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYD 473
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
213-572 |
1.47e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 213 KALAEQSEIIQAQLANRKQKLESVeLSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEK 292
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEV-LREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 293 LRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTTLKAVGTQ---------------QSVERPLEDCQKERKYS 357
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDElreiekrlsrleeeiNGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 358 SPGQGVLDNVLSQLDFSHSSEELLQaEVTRLEGSLESVSATCKQLSQELMEKyeELKRMEGHNNEYRTEIKKLKEQILQA 437
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEK--ELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 438 DQTYSS------ALEGMKMEISQLTREL--HQRDITIASAKCSSSDMEKqlkaEMQKAEEKAVEHKEILSQLESLKLENH 509
Cdd:PRK03918 418 KKEIKElkkaieELKKAKGKCPVCGRELteEHRKELLEEYTAELKRIEK----ELKEIEEKERKLRKELRELEKVLKKES 493
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755531339 510 RLS---ETVMKLELGLHEAKEISLADLQENYiEALNKLVSENQQLQKDLMSTKSELEHATNMCKKK 572
Cdd:PRK03918 494 ELIklkELAEQLKELEEKLKKYNLEELEKKA-EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
139-576 |
1.56e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 139 ELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEEEfrQKSLDWEKQRLIYQQQVSSLEAQRKALAEQ 218
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLN--NKYNDLKKQKEELENELNLLEKEKLNIQKN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 219 SEIIQAQLANRKQKLESVELSSQ------SEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEK 292
Cdd:TIGR04523 189 IDKIKNKLLKLELLLSNLKKKIQknksleSQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 293 LRESEKLLEALQEEQKELKASLQSQETFILEAKmQEKLQTTLKAVGTQqsverpLEDCQKErkysspgqgvLDNVLSQLD 372
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLN-NQKEQDWNKELKSE------LKNQEKK----------LEEIQNQIS 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 373 FSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQIlqadqtysSALEGMKMEI 452
Cdd:TIGR04523 332 QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI--------NDLESKIQNQ 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 453 SQLTRELhqrditiasakcsssdmEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMKLELGLHEAKeiSLAD 532
Cdd:TIGR04523 404 EKLNQQK-----------------DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLD--NTRE 464
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 755531339 533 LQENYIEAL----NKLVSENQQLQKDLMSTKSELEHATNMCKKKDGEI 576
Cdd:TIGR04523 465 SLETQLKVLsrsiNKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
202-578 |
2.46e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 202 QQQVSSLEAQRKALAEQSEIIQAQLAN-RKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNM 280
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDlNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 281 TILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFI--LEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSS 358
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIndLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 359 PGQGVLDNVLSQLDFSHSSEEL-----------LQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEI 427
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELiiknldntresLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 428 KKLKEQI---LQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSSSDMEK-----QLKAEMQKAEEKAVEHKEILS 499
Cdd:TIGR04523 513 KDLTKKIsslKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKnkeieELKQTQKSLKKKQEEKQELID 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 500 QLESLKLE-NHRLSETVMKL-----ELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDL---MSTKSELEHATNMCK 570
Cdd:TIGR04523 593 QKEKEKKDlIKEIEEKEKKIsslekELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIkeiRNKWPEIIKKIKESK 672
|
....*...
gi 755531339 571 KKDGEIFN 578
Cdd:TIGR04523 673 TKIDDIIE 680
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
102-626 |
6.42e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 6.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 102 AELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIE----EHEKTKQEMAMEYKE 177
Cdd:pfam15921 320 SDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQkllaDLHKREKELSLEKEQ 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 178 ELLKLQEEEFRQKSLD----------WEKQRL-------------IYQQQVSSLEAQRKALaEQSEIIQAQLANRKQKLE 234
Cdd:pfam15921 400 NKRLWDRDTGNSITIDhlrrelddrnMEVQRLeallkamksecqgQMERQMAAIQGKNESL-EKVSSLTAQLESTKEMLR 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 235 SV--EL--------SSQSEIQHLNSKLERAKDTICANELEIERLNIRVNdlmgTNMTILQDHRQKEEKLRESEKLLEALQ 304
Cdd:pfam15921 479 KVveELtakkmtleSSERTVSDLTASLQEKERAIEATNAEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTECEALK 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 305 EEQKELKASLQsqetfILEAKMQEKLQ------TTLKAVGTQQS-VERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSS 377
Cdd:pfam15921 555 LQMAEKDKVIE-----ILRQQIENMTQlvgqhgRTAGAMQVEKAqLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 378 EELlqAEVTRLEGSLESVSATcKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTR 457
Cdd:pfam15921 630 LEL--EKVKLVNAGSERLRAV-KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS 706
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 458 ELHQRDITIASAKCSSSD-------MEKQLKAE-----------------MQKA--------EEK----------AVEHK 495
Cdd:pfam15921 707 ELEQTRNTLKSMEGSDGHamkvamgMQKQITAKrgqidalqskiqfleeaMTNAnkekhflkEEKnklsqelstvATEKN 786
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 496 EILSQLESLKLENHRLSETVMKLELGLHEAkEISLADLQEnyiealnkLVSENQQlqkdlMSTKSELEHATNMckkkdGE 575
Cdd:pfam15921 787 KMAGELEVLRSQERRLKEKVANMEVALDKA-SLQFAECQD--------IIQRQEQ-----ESVRLKLQHTLDV-----KE 847
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 755531339 576 IFNPAHSRAAGFKNAELKPIHGQHRHDGIKTEQYKT---GHHSPRGQTLDSiDP 626
Cdd:pfam15921 848 LQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQSTAsflSHHSRKTNALKE-DP 900
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
278-576 |
7.41e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 7.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 278 TNMTILqdHRQKEekLRESEKLLEALQEEQKELKASLQSqetfiLEAKMQEKLQTTLKAVGTQQSVERPLEDCQKerkys 357
Cdd:TIGR02168 668 TNSSIL--ERRRE--IEELEEKIEELEEKIAELEKALAE-----LRKELEELEEELEQLRKELEELSRQISALRK----- 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 358 spgqgvldnvlsQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQA 437
Cdd:TIGR02168 734 ------------DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 438 DQTYSSAlegmKMEISQLTRELHQRDITIASakcsssdMEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMK 517
Cdd:TIGR02168 802 REALDEL----RAELTLLNEEAANLRERLES-------LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 755531339 518 LELGLHEAKEISlaDLQENYIEALNKLVSENQQLQKDLMSTKSELEHATNMCKKKDGEI 576
Cdd:TIGR02168 871 LESELEALLNER--ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
138-576 |
2.12e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 138 RELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAmeykeellklqeeefrqksldwEKQRliyqqQVSSLEAQRKALAE 217
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIE----------------------ELEK-----ELESLEGSKRKLEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 218 QSEIIQAQLANRKQKLESVE-----LSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEK 292
Cdd:PRK03918 260 KIRELEERIEELKKEIEELEekvkeLKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 293 LRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTTLKAVgTQQSVERPLEDCQKERKYSspgQGVLDNVLSQLD 372
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL-TPEKLEKELEELEKAKEEI---EEEISKITARIG 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 373 FSHSSEELLQAEVTRLEGSlESVSATCKQL-----SQELMEKY-EELKRMEGHNNEYRTEIKKLKEQILQADQTYS---- 442
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKA-KGKCPVCGRElteehRKELLEEYtAELKRIEKELKEIEEKERKLRKELRELEKVLKkese 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 443 -SALEGMKMEISQLTRELHQRDITIASAKcsSSDMEK------QLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETV 515
Cdd:PRK03918 495 lIKLKELAEQLKELEEKLKKYNLEELEKK--AEEYEKlkekliKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL 572
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755531339 516 MKL-----ELGLHEAKEI-----SLADLQENYIEALNkLVSENQQLQKDLMSTKSELEHATNMCKKKDGEI 576
Cdd:PRK03918 573 AELlkeleELGFESVEELeerlkELEPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
201-372 |
4.42e-05 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 46.26 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 201 YQQQVSSLEAQRKALAEQSEIIQAQLaNRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNdlmgtNM 280
Cdd:pfam00529 56 YQAALDSAEAQLAKAQAQVARLQAEL-DRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLA-----RR 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 281 TIL--QDHRQKEEkLRESEKLLEALQEEQKELKASL--------QSQETFILEAKmQEKLQTTLKAVGTQQSVERPLEDC 350
Cdd:pfam00529 130 RVLapIGGISRES-LVTAGALVAQAQANLLATVAQLdqiyvqitQSAAENQAEVR-SELSGAQLQIAEAEAELKLAKLDL 207
|
170 180
....*....|....*....|...
gi 755531339 351 QK-ERKysSPGQGVLDNVLSQLD 372
Cdd:pfam00529 208 ERtEIR--APVDGTVAFLSVTVD 228
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
261-563 |
6.98e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 6.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 261 NELEIERLNI-RVNDLMG---TNMTILQDHRQKEEKLREseklleaLQEEQKELKASLQSQETFILEAKMQEKLQTTLKA 336
Cdd:COG1196 179 RKLEATEENLeRLEDILGeleRQLEPLERQAEKAERYRE-------LKEELKELEAELLLLKLRELEAELEELEAELEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 337 VGTQQSVERPLEDCQKERKysspgqgVLDNVLSQLDFS----HSSEELLQAEVTRLEGSLESVSATCKQLS---QELMEK 409
Cdd:COG1196 252 EAELEELEAELAELEAELE-------ELRLELEELELEleeaQAEEYELLAELARLEQDIARLEERRRELEerlEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 410 YEELkrmEGHNNEYRTEIKKLKEQILQADQTYSSALEgmkmEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEE 489
Cdd:COG1196 325 LAEL---EEELEELEEELEELEEELEEAEEELEEAEA----ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755531339 490 KAVEHKEILSQLESLKLENHRLSETVMKLELGL--HEAKEISLADLQENYIEALNKLVSENQQLQKDLMSTKSELE 563
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALaeLEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-355 |
7.04e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 7.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 202 QQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVelssQSEIQHLNSKLERAKDTI------------CANELE----- 264
Cdd:COG3883 36 QAELDALQAELEELNEEYNELQAELEALQAEIDKL----QAEIAEAEAEIEERREELgeraralyrsggSVSYLDvllgs 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 265 ------IERLNIrVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETfILEAKMQEKLQTTLKAVG 338
Cdd:COG3883 112 esfsdfLDRLSA-LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA-ELEAQQAEQEALLAQLSA 189
|
170
....*....|....*..
gi 755531339 339 TQQSVERPLEDCQKERK 355
Cdd:COG3883 190 EEAAAEAQLAELEAELA 206
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
97-553 |
8.59e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 8.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 97 LTSCEAELQELMKQIDImvAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVgilhQQIEEHEKTKQEMAMEYK 176
Cdd:TIGR00618 272 LRAQEAVLEETQERINR--ARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLL----MKRAAHVKQQSSIEEQRR 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 177 EELLKLQEEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESV---------ELSSQSEIQ-- 245
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILqreqatidtRTSAFRDLQgq 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 246 ----HLNSKLERAKDTIC----ANELEIERLNIRVNDLMGTNM--------TILQDHRQKEEKLRESEKLLEALQEEQKE 309
Cdd:TIGR00618 426 lahaKKQQELQQRYAELCaaaiTCTAQCEKLEKIHLQESAQSLkereqqlqTKEQIHLQETRKKAVVLARLLELQEEPCP 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 310 LKASLQSQEtfileakmqEKLQTTLKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLE 389
Cdd:TIGR00618 506 LCGSCIHPN---------PARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 390 GSLESVSATCKQLSQELME---------KYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELH 460
Cdd:TIGR00618 577 QCDNRSKEDIPNLQNITVRlqdlteklsEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLT 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 461 QRDITIASAkcsSSDMEKQLKAEMQKAEEKAVEH--------KEILSQLESLKLENHRLSETVMKLELGLHEAKEISLAD 532
Cdd:TIGR00618 657 QERVREHAL---SIRVLPKELLASRQLALQKMQSekeqltywKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD 733
|
490 500
....*....|....*....|.
gi 755531339 533 LQENyIEALNKLVSENQQLQK 553
Cdd:TIGR00618 734 LAAR-EDALNQSLKELMHQAR 753
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
202-527 |
1.01e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 202 QQQVSSLEAQRKALAEQseiiQAQLANRKQKLESVELS-SQSEIQHLNSKL----ERAKDTICANELEIERlniRVNDLM 276
Cdd:COG3096 784 EKRLEELRAERDELAEQ----YAKASFDVQKLQRLHQAfSQFVGGHLAVAFapdpEAELAALRQRRSELER---ELAQHR 856
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 277 GTNmtilQDHRQKEEKLRESEKLLEALQEEqkelkASLQSQETfiLEAKMQEklqttlkavgtqqsVERPLEDCQKERKY 356
Cdd:COG3096 857 AQE----QQLRQQLDQLKEQLQLLNKLLPQ-----ANLLADET--LADRLEE--------------LREELDAAQEAQAF 911
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 357 -SSPGQ--GVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSqELMEK-----YEELKRMEGHNNEYRTeik 428
Cdd:COG3096 912 iQQHGKalAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALS-EVVQRrphfsYEDAVGLLGENSDLNE--- 987
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 429 KLKEQILQADQTYSSALEGMKMEISQLTrELHQRDITIASAKCSSSDMEKQLKAEMQK--------AEEKAVEHK----- 495
Cdd:COG3096 988 KLRARLEQAEEARREAREQLRQAQAQYS-QYNQVLASLKSSRDAKQQTLQELEQELEElgvqadaeAEERARIRRdelhe 1066
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 755531339 496 ----------EILSQLESLKLENHRLSETVMKLELGLHEAKE 527
Cdd:COG3096 1067 elsqnrsrrsQLEKQLTRCEAEMDSLQKRLRKAERDYKQERE 1108
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
144-572 |
2.12e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 144 RSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEEEFRQKSLDWEKQRLIYQQQ--VSSLE----------AQ 211
Cdd:pfam05483 232 KKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDhlTKELEdikmslqrsmST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 212 RKALAEQSEIIQAQLANRKQKLES-VELSSQSEIQHlNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKE 290
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAqMEELNKAKAAH-SFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKS 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 291 EKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTTLKavGTQQSVERPLEDCQKErkysspgqgvLDNVLSQ 370
Cdd:pfam05483 391 SELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELK--GKEQELIFLLQAREKE----------IHDLEIQ 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 371 LDFSHSSEELLQAEVTRLEGSLES-------VSATCKQLSQELMEKYEELKRMEGHNNEYRTEI---KKLKEQILQADQT 440
Cdd:pfam05483 459 LTAIKTSEEHYLKEVEDLKTELEKeklknieLTAHCDKLLLENKELTQEASDMTLELKKHQEDIincKKQEERMLKQIEN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 441 YSSALEGMKMEISQLTRELHQRDITIasaKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMKLEl 520
Cdd:pfam05483 539 LEEKEMNLRDELESVREEFIQKGDEV---KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELH- 614
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 755531339 521 glHEAKEISLADLQENyiEALNKLVSENQQLQKDLMSTKSELEHATNMCKKK 572
Cdd:pfam05483 615 --QENKALKKKGSAEN--KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKE 662
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
128-349 |
2.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 128 ALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEEEFRQKSLDWEKQRLiyQQQvss 207
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL--RAE--- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 208 LEAQRKALAEQseIIQAQLANRKQKLESveLSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNmtilqdhR 287
Cdd:COG4942 99 LEAQKEELAEL--LRALYRLGRQPPLAL--LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR-------A 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755531339 288 QKEEKLRESEKLLEALQEEQKELKASLQSQETfiLEAKMQEKLQTTLKAVGTQQSVERPLED 349
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQK--LLARLEKELAELAAELAELQQEAEELEA 227
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
202-434 |
3.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 202 QQQVSSLEAQRKALAEQSEII----------------QAQLANRKQKLESVELSsqseiqhlNSKLERAKDTICANELEI 265
Cdd:COG4913 630 EERLEALEAELDALQERREALqrlaeyswdeidvasaEREIAELEAELERLDAS--------SDDLAALEEQLEELEAEL 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 266 ERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQK-----ELKASLQSQETFILEAKMQEKLQTTLKAVGTQ 340
Cdd:COG4913 702 EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelraLLEERFAAALGDAVERELRENLEERIDALRAR 781
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 341 QS-VERPLEDCQKE--RKYSSPGQGVLDNVLSQLDFshsseellQAEVTRLEGSlesvsatckqlsqELMEKYEELKRME 417
Cdd:COG4913 782 LNrAEEELERAMRAfnREWPAETADLDADLESLPEY--------LALLDRLEED-------------GLPEYEERFKELL 840
|
250 260
....*....|....*....|....*.
gi 755531339 418 GHNN---------EYRTEIKKLKEQI 434
Cdd:COG4913 841 NENSiefvadllsKLRRAIREIKERI 866
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
101-325 |
3.42e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 101 EAELQELMKQIDIM------VAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAME 174
Cdd:COG4942 26 EAELEQLQQEIAELekelaaLKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 175 YKEELLKLqeeefrQKSLDWEKQRLIYQQQvSSLEAQRKAlaeqsEIIQAQLANRKQKLESVElSSQSEIQHLNSKLERA 254
Cdd:COG4942 106 LAELLRAL------YRLGRQPPLALLLSPE-DFLDAVRRL-----QYLKYLAPARREQAEELR-ADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755531339 255 KDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESeklLEALQEEQKELKASLQSQETFILEAK 325
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAE---LAELQQEAEELEALIARLEAEAAAAA 240
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
100-584 |
4.40e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 100 CEAELQELMKQIDIMVAhKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMamEYKEEL 179
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL--ESRLEE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 180 LKLQEEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELS-SQSEIQHLNSKLERAKDTI 258
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQAELEELEEELEELQEEL 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 259 CANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETF------------------ 320
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlselisvdegye 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 321 -----ILEAKMQ----EKLQTTLKAVGTQ-----------------------------QSVERPLEDCQKERKYSSPGQG 362
Cdd:TIGR02168 537 aaieaALGGRLQavvvENLNAAKKAIAFLkqnelgrvtflpldsikgteiqgndreilKNIEGFLGVAKDLVKFDPKLRK 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 363 VLDNVLSQ----------LDFSHSSEEL-----LQAEVTRLEGS------------------LESVSATCKQLSQELMEK 409
Cdd:TIGR02168 617 ALSYLLGGvlvvddldnaLELAKKLRPGyrivtLDGDLVRPGGVitggsaktnssilerrreIEELEEKIEELEEKIAEL 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 410 YEELKRMEGHNNEYRTEIKKLKEQILQADQtyssALEGMKMEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEE 489
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSR----QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 490 KAVEHKEILSQLESLKLENHRLSETVMKLELGLHEAKEIsLADLQENYIEALNKLvsenQQLQKDLMSTKSELEHATNMC 569
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE-LTLLNEEAANLRERL----ESLERRIAATERRLEDLEEQI 847
|
570
....*....|....*
gi 755531339 570 KKKDGEIFNPAHSRA 584
Cdd:TIGR02168 848 EELSEDIESLAAEIE 862
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
341-563 |
4.70e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 341 QSVERPLEDCQKERkysSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQ-------LSQELMEKYEEL 413
Cdd:TIGR02169 684 EGLKRELSSLQSEL---RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEleedlssLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 414 KRMEGHNNEYRTEIKKLKEQILQADQTYSSAlegmkmEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVE 493
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEALNDLEARLSHS------RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 494 HKEILSQLESLKLENHRLSETVMKLELGLHEAKEIsladlQENYIEALNKLVSENQQLQKDLMSTKSELE 563
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE-----LEELEAALRDLESRLGDLKKERDELEAQLR 899
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
101-510 |
5.01e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 101 EAELQELMKQIDiMVAHKKSEWEGQTHALETCLDIRD--RELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAM--EYK 176
Cdd:COG4717 94 QEELEELEEELE-ELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELRELEEELEEleAEL 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 177 EELLKLQEEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLEsvELSSQSEIQHLNSKLERAK- 255
Cdd:COG4717 173 AELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE--QLENELEAAALEERLKEARl 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 256 -----DTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKL 330
Cdd:COG4717 251 llliaAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGL 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 331 QTTLKAVGTQQSVERPLEDCQKERKYSSpgqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLsQELMEKY 410
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAEE-----LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEY-QELKEEL 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 411 EELK-RMEGHNNEYRTEIKKL-KEQILQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAE 488
Cdd:COG4717 405 EELEeQLEELLGELEELLEALdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAE 484
|
410 420
....*....|....*....|..
gi 755531339 489 EKAVEHKEILSQLESLKLENHR 510
Cdd:COG4717 485 LRELAEEWAALKLALELLEEAR 506
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
149-451 |
1.44e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 149 MKHKEVGILHQQIEEHEKT--------KQEMAMEYKEELLKLQEEEFRQKSLDweKQRLIYQQQvssleaQRKALAEQSE 220
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMeqerlrqeKEEKAREVERRRKLEEAEKARQAEMD--RQAAIYAEQ------ERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 221 IIQAQLANRKQKLE-------SVELSSQSEIQHLNSKLERaKDTICANELEIERlnirvndlmgtNMTILQDHRQKeeKL 293
Cdd:pfam17380 350 LERIRQEERKRELErirqeeiAMEISRMRELERLQMERQQ-KNERVRQELEAAR-----------KVKILEEERQR--KI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 294 RESEKLLEALQEEQKELKaslQSQETFILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSspgqgvLDNVLSQLDF 373
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEAR---QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKK------LELEKEKRDR 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 374 SHSSEE---LLQAEVTRLEGSLESVSATCKQLSQELMEK----YEELKRMEGHnNEYRTEI-----KKLKEQILQADQTy 441
Cdd:pfam17380 487 KRAEEQrrkILEKELEERKQAMIEEERKRKLLEKEMEERqkaiYEEERRREAE-EERRKQQemeerRRIQEQMRKATEE- 564
|
330
....*....|
gi 755531339 442 SSALEGMKME 451
Cdd:pfam17380 565 RSRLEAMERE 574
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
187-389 |
2.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 187 FRQKS--LDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESV-----ELSSQSEIQHLNSKLERAkdtic 259
Cdd:COG3206 201 FRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGpdalpELLQSPVIQQLRAQLAEL----- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 260 anELEIERLNIRVNDlmgtnmtilqDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFIL--EAKMQEKLQTTLKAV 337
Cdd:COG3206 276 --EAELAELSARYTP----------NHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQarEASLQAQLAQLEARL 343
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 755531339 338 GTQQSVERPLEdcQKERKYSSpGQGVLDNVLSQLDFSHSSEELLQAEVTRLE 389
Cdd:COG3206 344 AELPELEAELR--RLEREVEV-ARELYESLLQRLEEARLAEALTVGNVRVID 392
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
200-469 |
2.42e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 200 IYQQQvsSLEAQRKALAEQSEIIQAQLANRKQKLESVElssqseiqhlnsklerakdticaNELEIERLNIRVNDLMGTN 279
Cdd:COG3206 160 AYLEQ--NLELRREEARKALEFLEEQLPELRKELEEAE-----------------------AALEEFRQKNGLVDLSEEA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 280 MTILQdhrqkeeKLRESEKLLEALQEEQKELKASLQSqetfiLEAKMQEKLQT--TLKAVGTQQSVERPLEDCQKE---- 353
Cdd:COG3206 215 KLLLQ-------QLSELESQLAEARAELAEAEARLAA-----LRAQLGSGPDAlpELLQSPVIQQLRAQLAELEAElael 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 354 RKYSSPGQGVLDNVLSQLDfshSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQ 433
Cdd:COG3206 283 SARYTPNHPDVIALRAQIA---ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
250 260 270
....*....|....*....|....*....|....*.
gi 755531339 434 ILQADQTYSSALEgmKMEISQLTRELHQRDITIASA 469
Cdd:COG3206 360 VEVARELYESLLQ--RLEEARLAEALTVGNVRVIDP 393
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
286-566 |
2.95e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 286 HRQKEE---KLRESEKLLEALQEEQKELKASLQSQEtfiLEAKMQEK---LQTTLKAVGTQQSVERpLEDCQKErkyssp 359
Cdd:TIGR02168 171 KERRKEterKLERTRENLDRLEDILNELERQLKSLE---RQAEKAERykeLKAELRELELALLVLR-LEELREE------ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 360 gqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSLEsvsatckQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQ 439
Cdd:TIGR02168 241 ----LEELQEELKEAEEELEELTAELQELEEKLE-------ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 440 TYSSALEGMKMEISQLTRELHQRDITIASAKcSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETV---- 515
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLrskv 388
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 755531339 516 --MKLELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLMSTKSELEHAT 566
Cdd:TIGR02168 389 aqLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE 441
|
|
| Gp58 |
pfam07902 |
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ... |
277-477 |
3.05e-03 |
|
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.
Pssm-ID: 369586 [Multi-domain] Cd Length: 594 Bit Score: 40.71 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 277 GTNMTILQDHRQKEEKLRES-EKLLEALQEEQKELKASLQSQETFILEAKMQEK--LQTTLKAVGTQQSVERPLEDCQKE 353
Cdd:pfam07902 132 GIATRISEDTDKKLALINETiSGIRREYQDADRQLSSSYQAGIEGLKATMASDKigLQAEIQASAQGLSQRYDNEIRKLS 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 354 RKYSSPGQGVLDNVLSQLD-----FSHSSEELLQAEVTRLEGSLESVSATCKQLSQelmekyeELKRMEGHNNEYRTEIK 428
Cdd:pfam07902 212 AKITTTSSGTTEAYESKLDdlraeFTRSNQGMRTELESKISGLQSTQQSTAYQISQ-------EISNREGAVSRVQQDLD 284
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 755531339 429 KLKEQILQADQTYSS---ALEGMKMEISQLTRELHQRDITIA---SAKCSSSDME 477
Cdd:pfam07902 285 SYQRRLQDAEKNYSSltqTVKGLQSTVSDPNSKLESRITQLAgliEQKVTRGDVE 339
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
284-593 |
4.08e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 284 QDHRQKEEKLRESEKLLEALQEEQKELKasLQSQETFILEAKMQEKLQTTLKAVGTQQSVERPLED------CQKERKYS 357
Cdd:TIGR00606 613 ELESKEEQLSSYEDKLFDVCGSQDEESD--LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENqsccpvCQRVFQTE 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 358 SPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQA 437
Cdd:TIGR00606 691 AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 438 DQTYSSALEGMK-----------MEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKL 506
Cdd:TIGR00606 771 ETLLGTIMPEEEsakvcltdvtiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 507 ENHRLSETVMKL-----ELGLHEAKEISLADLQENYIEALNKLVSENQQLQKDLMSTKSELEHATNMCKKKDGEIFNPAH 581
Cdd:TIGR00606 851 LIQDQQEQIQHLksktnELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930
|
330
....*....|..
gi 755531339 582 SRAAGFKNAELK 593
Cdd:TIGR00606 931 SKETSNKKAQDK 942
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
189-563 |
4.62e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 189 QKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQ---LANRKQKLESVE-----LSSQSEIQHLNSKLERAKDTICA 260
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQeavLEETQERINRARkaaplAAHIKAVTQIEQQAQRIHTELQS 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 261 NELEIERLnirvndlmgtnMTILQDHRQKEEKLRESEKLLEALQEEQKELkASLQSQETFILEAKMQEKlqTTLKAVGTQ 340
Cdd:TIGR00618 319 KMRSRAKL-----------LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHI-RDAHEVATSIREISCQQH--TLTQHIHTL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 341 QSVERPLEDcqkERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHN 420
Cdd:TIGR00618 385 QQQKTTLTQ---KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 421 NE----YRTEIKKL--KEQILQADQTYSSALEGMKMEISQLTREL---------HQRDITIASAKCSSSDMEKQLKAEMQ 485
Cdd:TIGR00618 462 QEsaqsLKEREQQLqtKEQIHLQETRKKAVVLARLLELQEEPCPLcgscihpnpARQDIDNPGPLTRRMQRGEQTYAQLE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 486 KAEEKaVEHK--EILSQLESLKLENHRLSETVMKLELGLHEAKEIslADLQENYIEALNKLVSENQQLQKDLMSTKSELE 563
Cdd:TIGR00618 542 TSEED-VYHQltSERKQRASLKEQMQEIQQSFSILTQCDNRSKED--IPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
143-353 |
5.20e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 5.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 143 LRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYkeellklqeeefRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEII 222
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERY------------KRDREQWERQRRELESRVAELKEELRQSREKHEEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 223 QAQ----------LANRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEK 292
Cdd:pfam07888 100 EEKykelsasseeLSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAK 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755531339 293 LRESEKLLEALQEEQKELKASLQSQETFILeaKMQEKLQTTLKAVGTQQSVERPLEDCQKE 353
Cdd:pfam07888 180 LQQTEEELRSLSKEFQELRNSLAQRDTQVL--QLQDTITTLTQKLTTAHRKEAENEALLEE 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
201-437 |
5.41e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 201 YQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTnm 280
Cdd:COG4913 240 AHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR-- 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 281 tiLQDHRQKEEKLRESE-----KLLEALQEEQKELKASLQSQETfiLEAKMQEKLQT-TLKAVGTQQSVERpledcqker 354
Cdd:COG4913 318 --LDALREELDELEAQIrgnggDRLEQLEREIERLERELEERER--RRARLEALLAAlGLPLPASAEEFAA--------- 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 355 kysspgqgVLDNVLSQLDFSHSSEELLQAEVTRLEGSLEsvsatckQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQI 434
Cdd:COG4913 385 --------LRAEAAALLEALEEELEALEEALAEAEAALR-------DLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
...
gi 755531339 435 LQA 437
Cdd:COG4913 450 AEA 452
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
97-345 |
5.42e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 97 LTSCEAELQELMKQIDIMVAHKKSEWEGQT-----HALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEM 171
Cdd:PRK02224 484 LEDLEEEVEEVEERLERAEDLVEAEDRIERleerrEDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 172 AMEYKEELLKLQEEEFRQKSLDWEKQRLI-----------YQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSS 240
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERIESLErirtllaaiadAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 241 QSE-IQHLNSKLERAKDTICANELEIERLNIRVNDLmgtnmtilqdhrQKEEKLRESE-KLLEALQEEQKELKASLQSQE 318
Cdd:PRK02224 644 DEArIEEAREDKERAEEYLEQVEEKLDELREERDDL------------QAEIGAVENElEELEELRERREALENRVEALE 711
|
250 260
....*....|....*....|....*..
gi 755531339 319 TFILEAKMQEKLQTTLKAVGTQQSVER 345
Cdd:PRK02224 712 ALYDEAEELESMYGDLRAELRQRNVET 738
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
224-415 |
5.78e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 224 AQLANRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVndlmgtnmtilQDHRQKEEKLRE------SE 297
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI-----------EEVEARIKKYEEqlgnvrNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 298 KLLEALQEEQKELKASLQSQETFILEAKMQ-EKLQTTLKAVGTQqsverpLEDCQKErkysspgqgvLDNVLSQLDfshS 376
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERiEELEEELAELEAE------LAELEAE----------LEEKKAELD---E 149
|
170 180 190
....*....|....*....|....*....|....*....
gi 755531339 377 SEELLQAEVTRLEGSLESVSATckqLSQELMEKYEELKR 415
Cdd:COG1579 150 ELAELEAELEELEAEREELAAK---IPPELLALYERIRK 185
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
103-571 |
6.16e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 103 ELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMA----MEYKEE 178
Cdd:pfam12128 280 ERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLpswqSELENL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 179 LLKLQEEEFRQKSLDWEKQRL---IYQQQVSSLEAQRKALAEQSEIIQAQLA---NRKQKLESvELSSQSEIQHLNSKLE 252
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRrskIKEQNNRDIAGIKDKLAKIREARDRQLAvaeDDLQALES-ELREQLEAGKLEFNEE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 253 RAKdticaNELEIERLNIRVNDLMGTNMTILQdhrqkeekLRESEKLLEALQEEQKELKASlqsqetfileakmQEKLQT 332
Cdd:pfam12128 439 EYR-----LKSRLGELKLRLNQATATPELLLQ--------LENFDERIERAREEQEAANAE-------------VERLQS 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 333 TLKAVGTQQsvERPLEDCQKERKYSSPGQGVLDNVLSQLD-FSHSSEELLQAEVTRLEGSLESVSATcKQLSQELMEKYE 411
Cdd:pfam12128 493 ELRQARKRR--DQASEALRQASRRLEERQSALDELELQLFpQAGTLLHFLRKEAPDWEQSIGKVISP-ELLHRTDLDPEV 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 412 ELKRMEGHNNEYrteikKLKEQILQADQTYSSALEgmkmeiSQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKA 491
Cdd:pfam12128 570 WDGSVGGELNLY-----GVKLDLKRIDVPEWAASE------EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKAS 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 492 VEHKEILSQLESLKLENHRLSETVMKLELGLHEAkeisLADLQENYIEALNKLVSENQQLQKDLMSTKSE-----LEHAT 566
Cdd:pfam12128 639 REETFARTALKNARLDLRRLFDEKQSEKDKKNKA----LAERKDSANERLNSLEAQLKQLDKKHQAWLEEqkeqkREART 714
|
....*
gi 755531339 567 NMCKK 571
Cdd:pfam12128 715 EKQAY 719
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
241-517 |
7.84e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 241 QSEIQHLNSKLERAKDTICANELEIERLNIRVNDlmgtnmtILQDHRQKEEKLREsekllealqeEQKELKASLQSQETF 320
Cdd:PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE-------NIARKQNKYDELVE----------EAKTIKAEIEELTDE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 321 ILEAKMQ-EKLQTTLKAVGTQQS-VERPLEDCQKERKYSSPGqGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLEsvsat 398
Cdd:PHA02562 243 LLNLVMDiEDPSAALNKLNTAAAkIKSKIEQFQKVIKMYEKG-GVCPTCTQQISEGPDRITKIKDKLKELQHSLE----- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 399 ckqlsqELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSalegmkmeisqltrelhqrdiTIASAKcsssdmek 478
Cdd:PHA02562 317 ------KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT---------------------LVDKAK-------- 361
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 755531339 479 QLKAEMQKAEEKAVEHKEILSQL-ESLKLENHRLSETVMK 517
Cdd:PHA02562 362 KVKAAIEELQAEFVDNAEELAKLqDELDKIVKTKSELVKE 401
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
381-502 |
8.83e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.37 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 381 LQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQAD-----QTYSSALEGMKMEISQL 455
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnkeyEALQKEIESLKRRISDL 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 755531339 456 TRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQLE 502
Cdd:COG1579 109 EDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
195-317 |
9.75e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.37 E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 195 EKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVelSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNd 274
Cdd:COG1579 44 EARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV--RNNKEYEALQKEIESLKRRISDLEDEILELMERIE- 120
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 755531339 275 lmgtnmtilqdhrQKEEKLRESEKLLEALQEEQKELKASLQSQ 317
Cdd:COG1579 121 -------------ELEEELAELEAELAELEAELEEKKAELDEE 150
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
101-563 |
9.78e-03 |
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Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 39.39 E-value: 9.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 101 EAELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELL 180
Cdd:pfam01576 52 ETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEA 131
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 181 klqeeefrqKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQK---LESVELSSQSEIQHLNSKLERAKDT 257
Cdd:pfam01576 132 ---------KIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKaksLSKLKNKHEAMISDLEERLKKEEKG 202
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170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 258 ICANELEIERLNIRVNDLmgtnmtilqdHRQKEEKLRESEKLLEALQEEQKELKASLQSqetfiLEAKMQEKLQTTLKAV 337
Cdd:pfam01576 203 RQELEKAKRKLEGESTDL----------QEQIAELQAQIAELRAQLAKKEEELQAALAR-----LEEETAQKNNALKKIR 267
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250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 338 GTQQSVERPLEDCQKERKYSSPGQGVLDNVlsqldfshssEELLQAEVTRLEGSLESVSAtckqlSQELMEKYE----EL 413
Cdd:pfam01576 268 ELEAQISELQEDLESERAARNKAEKQRRDL----------GEELEALKTELEDTLDTTAA-----QQELRSKREqevtEL 332
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330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755531339 414 KRMeghnneYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVE 493
Cdd:pfam01576 333 KKA------LEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHK 406
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410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755531339 494 HKEILSQLESLkleNHRLSET-VMKLELGLHEAKeisLADLQENYIEALNKLVSENQQLQKDLMSTKSELE 563
Cdd:pfam01576 407 RKKLEGQLQEL---QARLSESeRQRAELAEKLSK---LQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQ 471
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