|
Name |
Accession |
Description |
Interval |
E-value |
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
1-653 |
0e+00 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 887.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 1 MRLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEG 80
Cdd:pfam07111 94 MRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEALSSLTSKAEG 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 81 LEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKH 160
Cdd:pfam07111 174 LEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTWELERQELLDTMQH 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 161 LKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDST 240
Cdd:pfam07111 254 LQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHRDSV 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 241 SQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNST 320
Cdd:pfam07111 334 KQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSST 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 321 QAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRL 400
Cdd:pfam07111 414 QIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLREERNRL 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 401 DAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQE 480
Cdd:pfam07111 494 DAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQE 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 481 IYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQE 560
Cdd:pfam07111 574 IYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQRLARRVQE 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 561 LERDKNLMLATLKQEGLLFCYKQQRLLAVLPSGVNKKCSPRS---VESSSSESPAAASCKESVKGSLTVLLDNLQGLSEA 637
Cdd:pfam07111 654 LERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLDKKSVVSSprpECSASAPIPAAVPTRESIKGSLTVLLDNLQGLSEA 733
|
650
....*....|....*.
gi 755556656 638 ISRDEDICVEDNQNTK 653
Cdd:pfam07111 734 ISREEAVCQEDNQDTC 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-564 |
1.69e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 1.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 2 RLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQE--QLSSLTQAHQKALDSLASKAE 79
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAElaRLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 80 GLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQVlpefpsQEWELERKELLDTLK 159
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE------EELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 160 HLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQpldplepefpkkcrslLRNWREKVFALMVQLKAQDLQHRDS 239
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE----------------LEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 240 TSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstksLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNS 319
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL------LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 320 TQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNR 399
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 400 LDAELQLSAHLIQQEVGRAREQGEVERRRLIEvaqQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQ 479
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLA---GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 480 EIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQR--LTRR 557
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLeeLERE 768
|
....*..
gi 755556656 558 VQELERD 564
Cdd:COG1196 769 LERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-577 |
1.38e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 16 AEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKE----------LEEIQSLHQEQLSSLTQAHQKALDSLASKAEGLEKS- 84
Cdd:PTZ00121 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEeernneeirkFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAd 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 85 --LNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKyVGEQVLPEFPSQEWELERKELLDTLKHLK 162
Cdd:PTZ00121 1294 eaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 163 EDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEfPKKCRSLLRNWREKVFALMVQLKAQDLQHRDstsq 242
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKAD---- 1447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 243 lriqvaELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQA 322
Cdd:PTZ00121 1448 ------EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 323 KLQSTMTRMDQAVAripSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDA 402
Cdd:PTZ00121 1522 KKADEAKKAEEAKK---ADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 403 ELQLSAHLIQQEVGRAREQGEV---------ERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQ 473
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIkaeelkkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 474 ELTQQQEIYGQALQEKVAEVETR-----LREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRlqDEARK 548
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK--DEEEK 1756
|
570 580
....*....|....*....|....*....
gi 755556656 549 EEGQRLTRRVQELERDKNLMLATLKQEGL 577
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
237-591 |
1.10e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 237 RDSTSQLRIQVAELQEQVtsqsqEQAILQRALQDKTAQVEVErmstkSLQMELDQAQEARRRQEQQIASAEEQLKFVVGA 316
Cdd:COG1196 192 EDILGELERQLEPLERQA-----EKAERYRELKEELKELEAE-----LLLLKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 317 MNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQlrvessppseaappldtDLSVELEQLREE 396
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR-----------------ELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 397 RNRLDAELQLsahlIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELT 476
Cdd:COG1196 325 LAELEEELEE----LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 477 QQQEIYGQA-----LQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEG 551
Cdd:COG1196 401 QLEELEEAEealleRLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 755556656 552 QRLTRRVQELERDKNLMLATLKQEGLLFCYKQQRLLAVLP 591
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
7-567 |
3.07e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 7 AVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEE---AKHKELEEIQSLHQEqLSSLTQAHQKALDSLASKAEGLEK 83
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAelqELEEKLEELRLEVSE-LEEEIEELQKELYALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 84 SLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQV--LPEFPSQEWELERK--ELLDTLK 159
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEaeLEELEAELEELESRleELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 160 HLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMVQLKAQDLQHRDS 239
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 240 TSQLRIQVAELQEQVTSQSQEQAILQ---RALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE--------- 307
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaieaa 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 308 --EQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSPPsEAAPPLD-- 383
Cdd:TIGR02168 543 lgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP-KLRKALSyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 384 -------TDLSVELEQLREERNR-----LDAELqLSAHLIQQEVGRAREQGEVERRRLIEvaqQLEQELQRAQESLASVG 451
Cdd:TIGR02168 622 lggvlvvDDLDNALELAKKLRPGyrivtLDGDL-VRPGGVITGGSAKTNSSILERRREIE---ELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 452 QQLEAARRGQQESTEEAASLRQELTQQQEiyGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQ 531
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSR--QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590
....*....|....*....|....*....|....*....
gi 755556656 532 EK---ERNQELRRLQDEARKEEGQRLTRRVQELERDKNL 567
Cdd:TIGR02168 776 ELaeaEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-566 |
1.75e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 2 RLETQAVELDALAVAEKAGQAEAEGLRTALAGAEMVRKNLEEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGL 81
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 82 EKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYvGEQVLPEFPSQEWeleRKELLDTLKHL 161
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF-SEGVKALLKNQSG---LSGILGVLSEL 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 162 KEDRADLQATVEL-LQVRVQSL------THMLAL----QEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMVQLK 230
Cdd:TIGR02168 529 ISVDEGYEAAIEAaLGGRLQAVvvenlnAAKKAIaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV 608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 231 AQDLQHR----------------DSTSQLRIQVAELQEQVT---------------SQSQEQAILQRALQDKTAQVEVER 279
Cdd:TIGR02168 609 KFDPKLRkalsyllggvlvvddlDNALELAKKLRPGYRIVTldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEE 688
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 280 M--STKSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvhtIKG 357
Cdd:TIGR02168 689 LeeKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE---IEE 765
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 358 LMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQeVGRAREQGEVERRRLIEVAQQLE 437
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN-LRERLESLERRIAATERRLEDLE 844
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 438 QELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQA------LQEKVAEVETR---LREQLSDTKRRL 508
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLrseleeLSEELRELESKrseLRRELEELREKL 924
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 755556656 509 NEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKN 566
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
103-510 |
2.04e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 103 QKEADMLRNQLSKTQEELEAQVTLVESLRKYVgeqvlpefpsQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSL 182
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKEL----------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 183 THMLALQEEELTRKIQPLDPLEPEfpkkcRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQA 262
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEER-----LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 263 ILQRALQDKTAQVEvermstkSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLS 342
Cdd:TIGR02168 821 NLRERLESLERRIA-------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 343 NRLSYAVRKVHTIKGLMarkvalaqlrvessppseaappldTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQG 422
Cdd:TIGR02168 894 SELEELSEELRELESKR------------------------SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 423 EVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASL---RQELTQQQEIYGQA---LQEKVAEVETR 496
Cdd:TIGR02168 950 SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELkerYDFLTAQKEDLTEAketLEEAIEEIDRE 1029
|
410
....*....|....
gi 755556656 497 LREQLSDTKRRLNE 510
Cdd:TIGR02168 1030 ARERFKDTFDQVNE 1043
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
242-551 |
9.89e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 9.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 242 QLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERmstkslqmelDQAQEARRRQE---QQIASAEEQLKFVVGAMN 318
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELR----------LELEELELELEeaqAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 319 STQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKG-LMARKVALAQLRVESSppseaappldtdlsvELEQLREER 397
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEeLEEAEEELEEAEAELA---------------EAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 398 NRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ 477
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755556656 478 QQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEG 551
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
67-450 |
1.16e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 67 HQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVG--EQVLPEFPS 144
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAqlSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 145 QEWELERK--ELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTrkiqpldplepefpkkcrsllrnwREKV 222
Cdd:TIGR02168 762 EIEELEERleEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT------------------------LLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 223 FALMVQLKAQDLQHRDSTSQLRIQvaELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQ 302
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLE--DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 303 IASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYavrkvhtikglmarkvALAQLRVESSPPSEAAPPL 382
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN----------------LQERLSEEYSLTLEEAEAL 959
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755556656 383 DTDLSVELEQLREERNRLDAELqlsahliqQEVGR----AREQGEVERRRLIEVAQQLEqELQRAQESLASV 450
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKI--------KELGPvnlaAIEEYEELKERYDFLTAQKE-DLTEAKETLEEA 1022
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
238-549 |
1.18e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 238 DSTSQLRIQVAELQEQVtsqsqEQAILQRALQD--KTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKFVVG 315
Cdd:TIGR02168 193 DILNELERQLKSLERQA-----EKAERYKELKAelRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 316 AMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMAR-----KVALAQLRVESSPPSEAAPPLdTDLSVEL 390
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerqlEELEAQLEELESKLDELAEEL-AELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 391 EQLREERNRLDAELQlSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAAS 470
Cdd:TIGR02168 347 EELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755556656 471 LRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKE 549
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
283-518 |
2.12e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 283 KSLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARK 362
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 363 VALAQLRVESSPPSEAAPPldtdlsveleqlrEERNRLDAELQLSAHLIQQEVGRAREQgeverRRLIEVAQQLEQELQR 442
Cdd:COG4942 110 LRALYRLGRQPPLALLLSP-------------EDFLDAVRRLQYLKYLAPARREQAEEL-----RADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755556656 443 AQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvETRLREQLSDTKRRLNEARREQAKA 518
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE-AEELEALIARLEAEAAAAAERTPAA 246
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
35-567 |
2.84e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 2.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 35 EMVRKNLEEAKHKELEEIqslhqEQLSSLTQAHQKALDSL-ASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQL 113
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKA-----EEARKAEEAKKKAEDARkAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 114 SKTQEELE--------------------AQVTLVESLRKYVGEQVLPEFPSQEwELERKELLDTLKHLKEDRADLQATVE 173
Cdd:PTZ00121 1169 ARKAEDAKkaeaarkaeevrkaeelrkaEDARKAEAARKAEEERKAEEARKAE-DAKKAEAVKKAEEAKKDAEEAKKAEE 1247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 174 ---------LLQVRVQSLTHMLALQEEELTRKIQPLDPLE----------PEFPKKCRSLLRNWREKVFALMVQLKAQDL 234
Cdd:PTZ00121 1248 ernneeirkFEEARMAHFARRQAAIKAEEARKADELKKAEekkkadeakkAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 235 QHRDSTSQLRIQVAELQEQVTSQSQEQAILQ--------RALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASA 306
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEaeaaeekaEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 307 EEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVH--------TIKGLMARKVALAQLRVESSPPSEA 378
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEeakkaeeaKKKAEEAKKADEAKKKAEEAKKADE 1487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 379 APPLDTDLSVELEQLR---------------EERNRLD----AELQLSAHLIQ--QEVGRAREQGEVERRRLIEVAQQLE 437
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKkaaeakkkadeakkaEEAKKADeakkAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAE 1567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 438 QElQRAQESLASVGQQLEAARRGQQESTEEAASLR--------QELTQQQEIYGQALQEKVAEVETRLREQL----SDTK 505
Cdd:PTZ00121 1568 EA-KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYeeekkmkaEEAKKAEEAKIKAEELKKAEEEKKKVEQLkkkeAEEK 1646
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755556656 506 RRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQrLTRRVQELERDKNL 567
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA-LKKEAEEAKKAEEL 1707
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
150-565 |
6.22e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 6.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 150 ERKELLDTLKHLKEDRADLQATV-------ELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEfpkkcrsllrnwREKV 222
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIaetererEELAEEVRDLRERLEELEEERDDLLAEAGLDDAD------------AEAV 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 223 FALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQ-RA--LQDKTAQVEVERMSTKSlqmELDQAQEARRRQ 299
Cdd:PRK02224 313 EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEeRAeeLREEAAELESELEEARE---AVEDRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 300 EQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLM-ARKVALAQLRVESSPPSEA 378
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLeAGKCPECGQPVEGSPHVET 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 379 APPLD---TDLSVELEQLREERNRLDAELQlsahliqqevgRAREQGEVERR--RLIEVAQQLEQELQRAQESLASVGQQ 453
Cdd:PRK02224 470 IEEDRervEELEAELEDLEEEVEEVEERLE-----------RAEDLVEAEDRieRLEERREDLEELIAERRETIEEKRER 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 454 LEAARRGQQESTEEAASLRqELTQQQEIYGQALQEKVAEVETRlREQLSDTKRRLN------EARREQAKAVVSLR-QIQ 526
Cdd:PRK02224 539 AEELRERAAELEAEAEEKR-EAAAEAEEEAEEAREEVAELNSK-LAELKERIESLErirtllAAIADAEDEIERLReKRE 616
|
410 420 430
....*....|....*....|....*....|....*....
gi 755556656 527 HKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 565
Cdd:PRK02224 617 ALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDK 655
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-566 |
6.56e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 6.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 389 ELEQLREERNRLdAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQ----LEQELQRAQESLASVGQQLEAARRGQQES 464
Cdd:COG4913 243 ALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRrlelLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 465 TEEAASLRQELTQ---------QQEIygQALQEKVAEVETRlREQLSDTKRRLNEARREQAKAVVSLR-QIQHKATQEKE 534
Cdd:COG4913 322 REELDELEAQIRGnggdrleqlEREI--ERLERELEERERR-RARLEALLAALGLPLPASAEEFAALRaEAAALLEALEE 398
|
170 180 190
....*....|....*....|....*....|..
gi 755556656 535 RNQELRRLQDEARKEEgQRLTRRVQELERDKN 566
Cdd:COG4913 399 ELEALEEALAEAEAAL-RDLRRELRELEAEIA 429
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
359-496 |
9.69e-06 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 49.18 E-value: 9.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 359 MARKVALAQLRVESSPPSEAAPP--LDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEvERRRLIEVAQQL 436
Cdd:PRK11448 111 LAFRLAVWFHRTYGKDWDFKPGPfvPPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQ-ELVALEGLAAEL 189
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 437 EQELQRAQESLASVgqqleaarrgQQESTEEAASLRQELTQQQEIYGQALQekVAEVETR 496
Cdd:PRK11448 190 EEKQQELEAQLEQL----------QEKAAETSQERKQKRKEITDQAAKRLE--LSEEETR 237
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
33-565 |
1.15e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 33 GAEMVRKNLEEAKHkeleEIQSLhQEQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQ 112
Cdd:pfam15921 72 GKEHIERVLEEYSH----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 113 LSKTQEELEAQVTLVESLRKYVGEQVlpefpsqewELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEE 192
Cdd:pfam15921 147 LQNTVHELEAAKCLKEDMLEDSNTQI---------EQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 193 LTRKIQP-LDPLEPEFpkkcrSLLRNwreKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQailqraLQDK 271
Cdd:pfam15921 218 LGSAISKiLRELDTEI-----SYLKG---RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVE------ITGL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 272 TAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAEEQLKfvvgamnSTQAKLQSTMTRMDQavaripslsnrlSYAVRK 351
Cdd:pfam15921 284 TEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE-------STVSQLRSELREAKR------------MYEDKI 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 352 VHTIKGLMARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERR---R 428
Cdd:pfam15921 345 EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRElddR 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 429 LIEVaQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQ--LSDTKR 506
Cdd:pfam15921 425 NMEV-QRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtVSDLTA 503
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 755556656 507 RLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 565
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDK 562
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
247-559 |
1.21e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 247 VAELQEQVTSQ---SQEQAILQRALQDKTAQVEVERMSTKS----LQMELDqAQEARRRQEQQIASAEEQLKFVVGAMNS 319
Cdd:PRK04863 357 LEELEERLEEQnevVEEADEQQEENEARAEAAEEEVDELKSqladYQQALD-VQQTRAIQYQQAVQALERAKQLCGLPDL 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 320 TQAKLQstmTRMDQAVARIPSLSNRLSYAVRKV---HTIKGLMARKVALAQLRVESSPPSEAAppldtDLSVE-LEQLRE 395
Cdd:PRK04863 436 TADNAE---DWLEEFQAKEQEATEELLSLEQKLsvaQAAHSQFEQAYQLVRKIAGEVSRSEAW-----DVARElLRRLRE 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 396 ERNRLDAELQLSAHLIQQEvGRAREQGEVERRrLIEVAQQLEQELQRAQEsLASVGQQLEAARRGQQESTEEAASLRQEL 475
Cdd:PRK04863 508 QRHLAEQLQQLRMRLSELE-QRLRQQQRAERL-LAEFCKRLGKNLDDEDE-LEQLQEELEARLESLSESVSEARERRMAL 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 476 TQQQEiygqALQEKVAEVETRLRE--QLSDTKRRLNE---ARREQAKAVVSLRQiqhkATQEKERNQELRRLQDEARKEE 550
Cdd:PRK04863 585 RQQLE----QLQARIQRLAARAPAwlAAQDALARLREqsgEEFEDSQDVTEYMQ----QLLERERELTVERDELAARKQA 656
|
....*....
gi 755556656 551 GQRLTRRVQ 559
Cdd:PRK04863 657 LDEEIERLS 665
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
391-574 |
1.76e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 391 EQLREERNRLD-AELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQ---ELQRAQESLASVGQQLEAARRGQ----- 461
Cdd:COG3206 182 EQLPELRKELEeAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEaraELAEAEARLAALRAQLGSGPDALpellq 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 462 ----QESTEEAASLRQELTQQQEIYG------QALQEKVAEVETRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATQ 531
Cdd:COG3206 262 spviQQLRAQLAELEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQLAQ 338
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 755556656 532 EKERNQELRRLQDEARkeegqRLTRRVQELERDKNLMLATLKQ 574
Cdd:COG3206 339 LEARLAELPELEAELR-----RLEREVEVARELYESLLQRLEE 376
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
386-564 |
3.38e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 47.36 E-value: 3.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 386 LSVELEQ--LREERNRLDAELQLSAHLIQQEVGRAREQgeverrrLIEVAQQLEQELQRAQE---SLASVGQQLEAARRG 460
Cdd:PRK10929 80 LSAELRQqlNNERDEPRSVPPNMSTDALEQEILQVSSQ-------LLEKSRQAQQEQDRAREisdSLSQLPQQQTEARRQ 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 461 QQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLRE----QLSDTKrrlneaRREQAKAVVSLRQIQHkaTQEKERN 536
Cdd:PRK10929 153 LNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDElelaQLSANN------RQELARLRSELAKKRS--QQLDAYL 224
|
170 180
....*....|....*....|....*...
gi 755556656 537 QELRRLQDEARKEEGQRLTRRVQELERD 564
Cdd:PRK10929 225 QALRNQLNSQRQREAERALESTELLAEQ 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-513 |
3.97e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 389 ELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEA 468
Cdd:COG4913 310 ELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 755556656 469 ASLRQELTQQQEIYGQALQEKVAEvETRLREQLSDTKRRLNEARR 513
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLER 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
299-564 |
7.95e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 7.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 299 QEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMArkvalaqlrvessppsea 378
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA------------------ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 379 appldtDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIeVAQQLEQELQRAQESLASVGQQLEAAR 458
Cdd:COG4942 80 ------ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALL-LSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 459 RGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvetrlreqlsdtKRRLNEARREQAKAVVSLRQiqhkatQEKERNQE 538
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEE------------RAALEALKAERQKLLARLEK------ELAELAAE 214
|
250 260
....*....|....*....|....*.
gi 755556656 539 LRRLQDEArkeegQRLTRRVQELERD 564
Cdd:COG4942 215 LAELQQEA-----EELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
276-565 |
1.18e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 276 EVERMSTK--SLQMELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvh 353
Cdd:TIGR02169 675 ELQRLRERleGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE-- 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 354 tikgLMARKVALAQLRVESSPPSEaappldtdlsvELEQLREERNRLDAELqlsAHLIQQEVGRAREQGEVERRRLIEVA 433
Cdd:TIGR02169 753 ----IENVKSELKELEARIEELEE-----------DLHKLEEALNDLEARL---SHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 434 QQLEQELQRAQESLasvgQQLEAARRGQQESTEEAASLRQELTQQQEIyGQALQEKVAEVETRLREQLSDTKRRLNEARR 513
Cdd:TIGR02169 815 REIEQKLNRLTLEK----EYLEKEIQELQEQRIDLKEQIKSIEKEIEN-LNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 755556656 514 EQAKAVVSLRQIQhKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDK 565
Cdd:TIGR02169 890 ERDELEAQLRELE-RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
385-549 |
1.49e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 385 DLSVELEQLREERNRLDAELQLSAHLIQ--------QEVGRAREQGEVERRRLIE---VAQQLEQELQRAQESLASVGQQ 453
Cdd:COG4913 628 EAEERLEALEAELDALQERREALQRLAEyswdeidvASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEE 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 454 LEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLsdtKRRLNEARREQAKAVVSLRQIQHKATQEK 533
Cdd:COG4913 708 LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF---AAALGDAVERELRENLEERIDALRARLNR 784
|
170
....*....|....*.
gi 755556656 534 ERnQELRRLQDEARKE 549
Cdd:COG4913 785 AE-EELERAMRAFNRE 799
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
150-564 |
1.50e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 150 ERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQE-----EELTRKIQPLDPLEPEFPKKCRSL--LRNWREKV 222
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyqelEALEAELAELPERLEELEERLEELreLEEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 223 FALMVQLKAQ-DLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQ 301
Cdd:COG4717 169 EAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 302 QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTikglmarkvalaqlrvessPPSEAAPP 381
Cdd:COG4717 249 RLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG-------------------KEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 382 LDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQ-QLEQELQRAQESLASVGQQLEAARRG 460
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 461 QQESTEEAASLRQELTQQQE----IYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKaTQEKERN 536
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEqleeLLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE-LEQLEED 468
|
410 420
....*....|....*....|....*...
gi 755556656 537 QELRRLQDEArkeegQRLTRRVQELERD 564
Cdd:COG4717 469 GELAELLQEL-----EELKAELRELAEE 491
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
385-553 |
2.75e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 385 DLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQES 464
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 465 TEEAASLRQELT------QQQEIYGQALQEKVAEVETR---LREQLSDTKRRLNEARREQAKAVVSLRQIQHKatqEKER 535
Cdd:TIGR02169 328 EAEIDKLLAEIEelereiEEERKRRDKLTEEYAELKEEledLRAELEEVDKEFAETRDELKDYREKLEKLKRE---INEL 404
|
170
....*....|....*...
gi 755556656 536 NQELRRLQDEARKEEGQR 553
Cdd:TIGR02169 405 KRELDRLQEELQRLSEEL 422
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-575 |
2.82e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 389 ELEQLREERNRLDAELQLSAHLIQQEvgrareqgEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEA 468
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 469 ASLRQELTQQQEIYGQAL-----QEKVAEVETRLR-EQLSDTKRRL------NEARREQAKAVVS-LRQIQHKATQEKER 535
Cdd:COG4942 93 AELRAELEAQKEELAELLralyrLGRQPPLALLLSpEDFLDAVRRLqylkylAPARREQAEELRAdLAELAALRAELEAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 755556656 536 NQELRRLQDEARKEEgqrltRRVQELERDKNLMLATLKQE 575
Cdd:COG4942 173 RAELEALLAELEEER-----AALEALKAERQKLLARLEKE 207
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
414-570 |
3.73e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 414 EVGRAREQGEVERRRLIEVAQQLEQELQRAQESL-ASVGQQLEAARRGQQESTEEAASlRQELTQQQEIYGQALQEKVAE 492
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARkAEDARKAEEARKAEDAKRVEIAR-KAEDARKAEEARKAEDAKKAE 1179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 493 -----VETRLREQL--SDTKRRLNEARR--EQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELER 563
Cdd:PTZ00121 1180 aarkaEEVRKAEELrkAEDARKAEAARKaeEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
|
....*..
gi 755556656 564 DKNLMLA 570
Cdd:PTZ00121 1260 ARMAHFA 1266
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
283-487 |
3.93e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 3.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 283 KSLQMELDQAQEARR--RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMA 360
Cdd:COG3206 185 PELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPV 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 361 RKVALAQLRvessppseaappldtDLSVELEQLRE-------ERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVA 433
Cdd:COG3206 265 IQQLRAQLA---------------ELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 755556656 434 QQLEQELQRAQESLASVGQQLEaarrgqqesteEAASLRQELTQQQEIYGQALQ 487
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEA-----------ELRRLEREVEVARELYESLLQ 372
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
378-524 |
5.23e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 378 AAPPLDTDLSVELeqLRE--ERNR-LDAELQLSAHLiqQEVGRAREQGEVERRRLIEVAQ---QLEQELQRAQESLASVG 451
Cdd:PHA03247 842 APPPLATSPQAIL--LREllQRGQdLEAPADLAAWL--ASLGDAAGQGLVERKELDELARaihKINERQVRRSSGLAELE 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 452 --QQLEAARRGQQES-------------------TEEAASLRQE-LTQQQEIYGQALQEKVA-EVETRLREQLSDTKRRL 508
Cdd:PHA03247 918 rfEALDAALRQELESeaafvpapgaapyadagglSPETRRLAEDaLRQAKAMAAAKLTDELSpEARERLRARARAIEAML 997
|
170
....*....|....*.
gi 755556656 509 NEArREQAKAVVSLRQ 524
Cdd:PHA03247 998 EEA-RERAEAARAARE 1012
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
61-311 |
8.90e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 61 SSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKyvgeqvlp 140
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK-------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 141 efpsqewelerkELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDplepefpkkcrsLLRNWRE 220
Cdd:COG4942 91 ------------EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ------------YLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 221 KVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQE 300
Cdd:COG4942 147 ARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|.
gi 755556656 301 QQIASAEEQLK 311
Cdd:COG4942 227 ALIARLEAEAA 237
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
149-477 |
1.00e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 149 LERKELLDTLKHLKE-DRADLQATVELLQVRVQSLTHMLALQEeeltrKIQPLDPLEPEFPKKCR--SLLRNWRE-KVFA 224
Cdd:TIGR02169 153 VERRKIIDEIAGVAEfDRKKEKALEELEEVEENIERLDLIIDE-----KRQQLERLRREREKAERyqALLKEKREyEGYE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 225 LMVQLKAqdlqhrdstsqLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVE--VERMSTKSLQMELDQAQEARRRQEQ- 301
Cdd:TIGR02169 228 LLKEKEA-----------LERQKEAIERQLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKEKi 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 302 -----QIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRL-SYAVRKVHTIKGLMARKVALAQLRVESSPP 375
Cdd:TIGR02169 297 geleaEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeEERKRRDKLTEEYAELKEELEDLRAELEEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 376 SEAAPPLDTDLS---VELEQLREERNRLDAE---LQLSAHLIQQEVGRAREQGEVERRRLIEVA----------QQLEQE 439
Cdd:TIGR02169 377 DKEFAETRDELKdyrEKLEKLKREINELKREldrLQEELQRLSEELADLNAAIAGIEAKINELEeekedkaleiKKQEWK 456
|
330 340 350
....*....|....*....|....*....|....*...
gi 755556656 440 LQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQ 477
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
382-550 |
1.03e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 382 LDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRgQ 461
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE-R 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 462 QESTEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRR 541
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
....*....
gi 755556656 542 LQDEARKEE 550
Cdd:COG4717 235 ELEAAALEE 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
127-420 |
1.20e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 127 VESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQvRVQSLTHMLALQEEELTRKIQPLDPLEPE 206
Cdd:COG4913 206 IGDLDDFVREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLW 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 207 FPKKCRSLLRnwrekvfALMVQLKAQDLQHRDSTSQLRIQVAELQEQvtsqsqEQAILQRALQDKTAQVEvermstkSLQ 286
Cdd:COG4913 285 FAQRRLELLE-------AELEELRAELARLEAELERLEARLDALREE------LDELEAQIRGNGGDRLE-------QLE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 287 MELDQAQEARRRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKvhtikglmaRKVALA 366
Cdd:COG4913 345 REIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE---------AEAALR 415
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 755556656 367 QLRVESsppseaappldTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRARE 420
Cdd:COG4913 416 DLRREL-----------RELEAEIASLERRKSNIPARLLALRDALAEALGLDEA 458
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
30-311 |
1.76e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 30 ALAGAEMVRKNLEEAKHKELEEIQSLhQEQLSSLtqahQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADML 109
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRL-RERLEGL----KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 110 RNQLSKTQEELEAQVTLVESLRKYVgEQVLPEFPSQEWELERKELldTLKHLKEDRADLQAtvELLQVRVQSLTHMLALQ 189
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEI-ENVKSELKELEARIEELEE--DLHKLEEALNDLEA--RLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 190 EEELTRKIQPLDPLEPEFPKK--CRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVtsqsQEQAILQRA 267
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLtlEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL----EELEAALRD 879
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 755556656 268 LQDKTAQVEVERmstKSLQMELDQAQEARRRQEQQIASAEEQLK 311
Cdd:TIGR02169 880 LESRLGDLKKER---DELEAQLRELERKIEELEAQIEKKRKRLS 920
|
|
| TolC |
COG1538 |
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis]; |
228-524 |
1.85e-03 |
|
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441147 [Multi-domain] Cd Length: 367 Bit Score: 41.18 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 228 QLKAQDLQHRDSTSQLRIQVAE-------LQEQVTSQSQEQAILQRALQDKTAQVEVERMS---TKSLQMELDQAQEARR 297
Cdd:COG1538 59 QAEAAEADLRAARLDLAAEVAQayfdllaAQEQLALAEENLALAEELLELARARYEAGLASrldVLQAEAQLAQARAQLA 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 298 RQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLsnrLSYAVRKVHTIKGLMAR-KVALAQLRVESsppS 376
Cdd:COG1538 139 QAEAQLAQARNALALLLGLPPPAPLDLPDPLPPLPPLPPSLPGL---PSEALERRPDLRAAEAQlEAAEAEIGVAR---A 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 377 EAAPPLDTDLSVELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLievaqQLEQELQRAQESLASVGQQLEA 456
Cdd:COG1538 213 AFLPSLSLSASYGYSSSDDLFSGGSDTWSVGLSLSLPLFDGGRNRARVRAAKA-----QLEQAEAQYEQTVLQALQEVED 287
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755556656 457 ARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEVETRL-----REQLSDTKRRLNEARREQAKAVVSLRQ 524
Cdd:COG1538 288 ALAALRAAREQLEALEEALEAAEEALELARARYRAGLASLLdvldaQRELLQAQLNLIQARYDYLLALVQLYR 360
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
428-549 |
2.19e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 428 RLIEVAQQleqELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELtqqqEIYGQALQEKVAEVETRLREQLSDTKRR 507
Cdd:PRK00409 502 NIIEEAKK---LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQEEEDKLLEEAEKE 574
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 755556656 508 ----LNEARREQAKAVVSLRQIQ-HKATQEKERN-QELRRLQDEARKE 549
Cdd:PRK00409 575 aqqaIKEAKKEADEIIKELRQLQkGGYASVKAHElIEARKRLNKANEK 622
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
389-550 |
3.04e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 389 ELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEA 468
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 469 ASLRQELTQQQEIYGQALQEKVAEVETRlreqlsdTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARK 548
Cdd:pfam17380 516 KLLEKEMEERQKAIYEEERRREAEEERR-------KQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKAR 588
|
..
gi 755556656 549 EE 550
Cdd:pfam17380 589 AE 590
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
281-550 |
3.11e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 281 STKSLQMELDQAQEARRRQEQQI---ASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVAripSLSNRLSYAVRKVHTikg 357
Cdd:PTZ00121 1089 ADEATEEAFGKAEEAKKTETGKAeeaRKAEEAKKKAEDARKAEEARKAEDARKAEEARK---AEDAKRVEIARKAED--- 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 358 lmARKVALAQLRVESSPPSEAAPPLDTDLSVELEQLREERnRLDAELQLSAHLIQQEVGRAREQGEVERRRLIEVAQQLE 437
Cdd:PTZ00121 1163 --ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR-KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 438 QELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIygqalqEKVAEVETRLREQLSDTKRRLNEARReQAK 517
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL------KKAEEKKKADEAKKAEEKKKADEAKK-KAE 1312
|
250 260 270
....*....|....*....|....*....|...
gi 755556656 518 AVVSLRQIQHKATQEKERNQELRRLQDEARKEE 550
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
56-564 |
3.22e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 56 HQEQLssltQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTlveslRKYVG 135
Cdd:COG3096 345 QQEKI----ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQT-----RAIQY 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 136 EQVLPEFPSQEWELERKELldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE---------ELTRKIQPLDPLEPE 206
Cdd:COG3096 416 QQAVQALEKARALCGLPDL--TPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAarrqfekayELVCKIAGEVERSQA 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 207 FpKKCRSLLRNWREKvfalmvQLKAQDLQhrdstsQLRIQVAELQEQVTSQSQEQAIL----QRALQDKTAQVEVERMST 282
Cdd:COG3096 494 W-QTARELLRRYRSQ------QALAQRLQ------QLRAQLAELEQRLRQQQNAERLLeefcQRIGQQLDAAEELEELLA 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 283 K------SLQMELDQAQEAR---RRQEQQIASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVH 353
Cdd:COG3096 561 EleaqleELEEQAAEAVEQRselRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLERER 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 354 TIKG----LMARKVAL-AQLRVESSPPSEAAPPLDT---------------DLSVE--------------------LEQL 393
Cdd:COG3096 641 EATVerdeLAARKQALeSQIERLSQPGGAEDPRLLAlaerlggvllseiydDVTLEdapyfsalygparhaivvpdLSAV 720
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 394 REERNRLDAELQlSAHLIQQEV----GRAREQGEVERRRLIEVAQQLEQELQRAQESL---ASVGQQLEAARRGQQESTE 466
Cdd:COG3096 721 KEQLAGLEDCPE-DLYLIEGDPdsfdDSVFDAEELEDAVVVKLSDRQWRYSRFPEVPLfgrAAREKRLEELRAERDELAE 799
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 467 EAASLRQELTQQQEIYgQALQEKVAE-----VETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRR 541
Cdd:COG3096 800 QYAKASFDVQKLQRLH-QAFSQFVGGhlavaFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK 878
|
570 580
....*....|....*....|...
gi 755556656 542 LQDEARKEEGQRLTRRVQELERD 564
Cdd:COG3096 879 LLPQANLLADETLADRLEELREE 901
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
23-339 |
3.38e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 23 EAEGLRTALAGAEMVRkNLEEAKHKELEEIQSLHQEQLSSLTQAHQKALDSLASKAEGL---------EKSLNSLETK-- 91
Cdd:PRK04863 287 EALELRRELYTSRRQL-AAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALrqqekieryQADLEELEERle 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 92 -----RAGEAKQLAM-------AQKEADMLRNQLSKTQEELEAQVTL-------VESLRKYVGEQVLPEFpsqewelerk 152
Cdd:PRK04863 366 eqnevVEEADEQQEEnearaeaAEEEVDELKSQLADYQQALDVQQTRaiqyqqaVQALERAKQLCGLPDL---------- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 153 elldTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEE---------ELTRKIqpLDPLEPEFPKKC-RSLLRNWREkv 222
Cdd:PRK04863 436 ----TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAahsqfeqayQLVRKI--AGEVSRSEAWDVaRELLRRLRE-- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 223 falmvqLKAQDlqhrDSTSQLRIQVAELQEQVTSQSQEQAILQRALQDKTAQVEVErmstkslqmelDQAQEARRRQEQQ 302
Cdd:PRK04863 508 ------QRHLA----EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE-----------DELEQLQEELEAR 566
|
330 340 350
....*....|....*....|....*....|....*..
gi 755556656 303 IASAEEQLKFVVGAMNSTQAKLQSTMTRMDQAVARIP 339
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQLEQLQARIQRLAARAP 603
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
364-521 |
4.20e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 364 ALAQLRVE-SSPPSEaappLDtDLSVELEQLREERNRLDAElqlsahliqqevgraREQGEVERrrlievAQQLEQELQR 442
Cdd:COG0542 398 AAARVRMEiDSKPEE----LD-ELERRLEQLEIEKEALKKE---------------QDEASFER------LAELRDELAE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 443 AQESLAsvgqQLEAARRGQQESTEEAASLRQELTQQqeiYGQ--ALQEKVAEVETRLREQLSDTKRRLNEarrEQAKAVV 520
Cdd:COG0542 452 LEEELE----ALKARWEAEKELIEEIQELKEELEQR---YGKipELEKELAELEEELAELAPLLREEVTE---EDIAEVV 521
|
.
gi 755556656 521 S 521
Cdd:COG0542 522 S 522
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
148-464 |
4.81e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 148 ELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLDPLEPEFPKKCRSLLRNWREKVFALMV 227
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 228 QLkaqdlqhrdstSQLRIQVAELQEQvtsqsqeqailQRALQDKTAQVEVERMSTKSLQMELDQAQEARRRQEQQIASAE 307
Cdd:TIGR02169 302 EI-----------ASLERSIAEKERE-----------LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 308 EQLKFVvgaMNSTQAKLQSTMTRMDQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRVESSppseaappldTDLS 387
Cdd:TIGR02169 360 AELKEE---LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL----------ADLN 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 388 VELEQLREERNRLDAELQLSAHLIQQEVGRA------REQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQ 461
Cdd:TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLeqlaadLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
...
gi 755556656 462 QES 464
Cdd:TIGR02169 507 RGG 509
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
350-575 |
4.97e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 350 RKVHTIKGLMARKVALAQLRVESSPPSEAAPPLDtdlsvELEQLREERNRLDAELQLSAHLIQqEVGRAREQGEVERRRL 429
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDARKAEEARKAE-----DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDAKK 1177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 430 IEVAQQLEqELQRAQE-SLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIygqalqEKVAEVETRLREQLSDTKRRL 508
Cdd:PTZ00121 1178 AEAARKAE-EVRKAEElRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAV------KKAEEAKKDAEEAKKAEEERN 1250
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755556656 509 NEARREQAKAvvslrQIQHKATQEKERNQELRRLQDEARKEEGQRLTRRVQELERDKNLMLATLKQE 575
Cdd:PTZ00121 1251 NEEIRKFEEA-----RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
425-575 |
6.02e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.92 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 425 ERRRLIEVA----------QQLEQELQRAQESLASV-------GQQLEAARRgQQESTEEAASLRQELTQ-QQEIYGQAL 486
Cdd:COG1196 156 ERRAIIEEAagiskykerkEEAERKLEATEENLERLedilgelERQLEPLER-QAEKAERYRELKEELKElEAELLLLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 487 QEkvaevetrLREQLSDTKRRLNEARREQAKAVVSLRQIQHKATQEKERNQELRRLQDEARKEEgQRLTRRVQELERDKN 566
Cdd:COG1196 235 RE--------LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQDIA 305
|
....*....
gi 755556656 567 LMLATLKQE 575
Cdd:COG1196 306 RLEERRREL 314
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
390-558 |
6.41e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 390 LEQLREERNRLDAELQLSAhliQQEVGRAREQGEVERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAA 469
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEA---KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 470 SLRQELTQQQEIYGQALQEKVAEVEtrlreqlsdtkrRLNEARREQAKAVVsLRQIQHKAtqEKERNQELRRLQDEArKE 549
Cdd:PRK12704 121 QKQQELEKKEEELEELIEEQLQELE------------RISGLTAEEAKEIL-LEKVEEEA--RHEAAVLIKEIEEEA-KE 184
|
....*....
gi 755556656 550 EGQRLTRRV 558
Cdd:PRK12704 185 EADKKAKEI 193
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
58-267 |
6.95e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 6.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 58 EQLSSLTQAHQKALDSLASKAEGLEKSLNSLETKRAGEAKQLAMAQKEADMLRNQLSKTQEELEAQVTLVESLRKYVGEQ 137
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 138 V-----------LPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPLdplepe 206
Cdd:COG4942 110 LralyrlgrqppLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL------ 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755556656 207 fpKKCRSLLRNWREKVFALMVQLKAQDLQHRDSTSQLRIQVAELQEQVTSQSQEQAILQRA 267
Cdd:COG4942 184 --EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
432-563 |
8.87e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.07 E-value: 8.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 432 VAQQLEQELQRAQESLASVGQQLEAARRGQQESTEEAASLRQELTQQQEIYGQALQEKVAEvetrLREQLSDTKRRLNEA 511
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE----KDERIERLERELSEA 453
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 755556656 512 RREQAKAVVSLRQIQHKatqeKERNQELRRLQDEARkEEGQRLTRRVQELER 563
Cdd:COG2433 454 RSEERREIRKDREISRL----DREIERLERELEEER-ERIEELKRKLERLKE 500
|
|
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
419-517 |
8.98e-03 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 38.67 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 419 REQGEVERRRLIEVAQQLEQELQRAQESLasvGQQLEAARRG--QQESTEEAASLRQELTQQQEIYGQALQEKVAEVETR 496
Cdd:TIGR01541 40 EKLLEEAEQKALEALKKLAEATASIRAQN---KRQLDRFGLGdkQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDL 116
|
90 100
....*....|....*....|.
gi 755556656 497 LREQLSDTKRRLNEARREQAK 517
Cdd:TIGR01541 117 YKEQLAAIKASLNEALAELHA 137
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
381-501 |
9.71e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 38.59 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755556656 381 PLDTDLSVELEQLREERNRLDAELQLSAHLIQQevgrareqgevERRRLIEVAQQLEQELQRAQESLASVGQQLEAARRG 460
Cdd:pfam09787 40 DSSTALTLELEELRQERDLLREEIQKLRGQIQQ-----------LRTELQELEAQQQEEAESSREQLQELEEQLATERSA 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 755556656 461 QQESTEEAASLRQE-------LTQQQEIYGQALQEKVAEVEtRLREQL 501
Cdd:pfam09787 109 RREAEAELERLQEElryleeeLRRSKATLQSRIKDREAEIE-KLRNQL 155
|
|
| |
