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Conserved domains on  [gi|767910875|ref|XP_011508447|]
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T-cell surface glycoprotein CD3 zeta chain isoform X2 [Homo sapiens]

Protein Classification

TCR_zetazeta and ITAM domain-containing protein( domain architecture ID 10569225)

TCR_zetazeta and ITAM domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TCR_zetazeta pfam11628
T-cell surface glycoprotein CD3 zeta chain; The incorporation of the zetazeta signalling ...
 36-66 8.52e-16

T-cell surface glycoprotein CD3 zeta chain; The incorporation of the zetazeta signalling module requires one basic TCR alpha and two zetazeta aspartic acid TM residues. The structure of the zetazeta(TM) dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerization and assembly with TCR.


:

Pssm-ID: 463313  Cd Length: 31  Bit Score: 66.95  E-value: 8.52e-16
                          10        20        30
                  ....*....|....*....|....*....|.
gi 767910875   36 DPKLCYLLDGILFIYGVILTALFLRVKFSRS 66
Cdd:pfam11628   1 DPRLCYILDGILFIYGIIITALFCREKFSKS 31
ITAM super family cl02452
Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on ...
 77-97 1.11e-03

Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on tyrosine that links antigen receptors to downstream signalling machinery.


The actual alignment was detected with superfamily member smart00077:

Pssm-ID: 128390  Cd Length: 21  Bit Score: 35.05  E-value: 1.11e-03
                           10        20
                   ....*....|....*....|.
gi 767910875    77 NQLYNELNLGRREEYDVLDKR 97
Cdd:smart00077   1 DQLYQPLNKRQRDTYSDLNTR 21
ITAM super family cl02452
Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on ...
 146-166 4.23e-03

Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on tyrosine that links antigen receptors to downstream signalling machinery.


The actual alignment was detected with superfamily member smart00077:

Pssm-ID: 128390  Cd Length: 21  Bit Score: 33.13  E-value: 4.23e-03
                           10        20
                   ....*....|....*....|.
gi 767910875   146 DGLYQGLSTATKDTYDALHMQ 166
Cdd:smart00077   1 DQLYQPLNKRQRDTYSDLNTR 21
 
Name Accession Description Interval E-value
TCR_zetazeta pfam11628
T-cell surface glycoprotein CD3 zeta chain; The incorporation of the zetazeta signalling ...
 36-66 8.52e-16

T-cell surface glycoprotein CD3 zeta chain; The incorporation of the zetazeta signalling module requires one basic TCR alpha and two zetazeta aspartic acid TM residues. The structure of the zetazeta(TM) dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerization and assembly with TCR.


Pssm-ID: 463313  Cd Length: 31  Bit Score: 66.95  E-value: 8.52e-16
                          10        20        30
                  ....*....|....*....|....*....|.
gi 767910875   36 DPKLCYLLDGILFIYGVILTALFLRVKFSRS 66
Cdd:pfam11628   1 DPRLCYILDGILFIYGIIITALFCREKFSKS 31
ITAM smart00077
Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on ...
 77-97 1.11e-03

Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on tyrosine that links antigen receptors to downstream signalling machinery.


Pssm-ID: 128390  Cd Length: 21  Bit Score: 35.05  E-value: 1.11e-03
                           10        20
                   ....*....|....*....|.
gi 767910875    77 NQLYNELNLGRREEYDVLDKR 97
Cdd:smart00077   1 DQLYQPLNKRQRDTYSDLNTR 21
ITAM smart00077
Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on ...
 146-166 4.23e-03

Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on tyrosine that links antigen receptors to downstream signalling machinery.


Pssm-ID: 128390  Cd Length: 21  Bit Score: 33.13  E-value: 4.23e-03
                           10        20
                   ....*....|....*....|.
gi 767910875   146 DGLYQGLSTATKDTYDALHMQ 166
Cdd:smart00077   1 DQLYQPLNKRQRDTYSDLNTR 21
 
Name Accession Description Interval E-value
TCR_zetazeta pfam11628
T-cell surface glycoprotein CD3 zeta chain; The incorporation of the zetazeta signalling ...
 36-66 8.52e-16

T-cell surface glycoprotein CD3 zeta chain; The incorporation of the zetazeta signalling module requires one basic TCR alpha and two zetazeta aspartic acid TM residues. The structure of the zetazeta(TM) dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerization and assembly with TCR.


Pssm-ID: 463313  Cd Length: 31  Bit Score: 66.95  E-value: 8.52e-16
                          10        20        30
                  ....*....|....*....|....*....|.
gi 767910875   36 DPKLCYLLDGILFIYGVILTALFLRVKFSRS 66
Cdd:pfam11628   1 DPRLCYILDGILFIYGIIITALFCREKFSKS 31
ITAM smart00077
Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on ...
 77-97 1.11e-03

Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on tyrosine that links antigen receptors to downstream signalling machinery.


Pssm-ID: 128390  Cd Length: 21  Bit Score: 35.05  E-value: 1.11e-03
                           10        20
                   ....*....|....*....|.
gi 767910875    77 NQLYNELNLGRREEYDVLDKR 97
Cdd:smart00077   1 DQLYQPLNKRQRDTYSDLNTR 21
ITAM smart00077
Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on ...
 146-166 4.23e-03

Immunoreceptor tyrosine-based activation motif; Motif that may be dually phosphorylated on tyrosine that links antigen receptors to downstream signalling machinery.


Pssm-ID: 128390  Cd Length: 21  Bit Score: 33.13  E-value: 4.23e-03
                           10        20
                   ....*....|....*....|.
gi 767910875   146 DGLYQGLSTATKDTYDALHMQ 166
Cdd:smart00077   1 DQLYQPLNKRQRDTYSDLNTR 21
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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