|
Name |
Accession |
Description |
Interval |
E-value |
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
131-382 |
5.71e-91 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 277.65 E-value: 5.71e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 131 MENLSKEYQTLEQCLQ--HIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELESMcksLNKQDEKQLQELALEER 208
Cdd:COG0216 6 LEALEERYEELEALLSdpEVISDQKRFRKLSKEYAELEPIVEAYREYKKLLEDIEEAKEL---LEEESDPEMREMAKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 209 QTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGrtTGGD---IcqqFTREIFDMYQNYSCYKHWQFELLNYTPADYG 285
Cdd:COG0216 83 EELEARLEELEEELKILLLPKDPNDDKNVILEIRAG--TGGDeaaL---FAGDLFRMYSRYAERKGWKVEILSASEGELG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 286 GLHHAAARISGDGVYKHLKYEGGIHRVQRIPEV---GlssrmqRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGA 362
Cdd:COG0216 158 GYKEVIFRISGEGVYSRLKFESGVHRVQRVPETesqG------RIHTSAATVAVLPEAEEVDVEINPKDLRIDTFRSSGA 231
|
250 260
....*....|....*....|
gi 767978294 363 GGQHVNKTDSAVRLVHIPTG 382
Cdd:COG0216 232 GGQHVNTTDSAVRITHLPTG 251
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
131-382 |
1.94e-88 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 271.18 E-value: 1.94e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 131 MENLSKEYQTLEQCLQ--HIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELESMcksLNKQDEKQLQELALEER 208
Cdd:PRK00591 8 LEALEERYEELEALLSdpEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEM---LEEESDPEMREMAKEEL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 209 QTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLH 288
Cdd:PRK00591 85 KELEERLEELEEELKILLLPKDPNDDKNVILEIRAG--TGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 289 HAAARISGDGVYKHLKYEGGIHRVQRIPEV---GlssrmqRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQ 365
Cdd:PRK00591 163 EVIAEISGDGVYSKLKFESGVHRVQRVPATesqG------RIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQ 236
|
250
....*....|....*..
gi 767978294 366 HVNKTDSAVRLVHIPTG 382
Cdd:PRK00591 237 HVNTTDSAVRITHLPTG 253
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
134-334 |
5.04e-68 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 213.01 E-value: 5.04e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 134 LSKEYQTLEQCLQHIPV--NEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELESMCKslnkqdEKQLQELALEERQTI 211
Cdd:pfam03462 1 LEERYEELEALLSDPDVwdDQKRAQKLSKEYSELEPIVEAYREYKQALEDLEEAKELLE------DPELAELAEEELEEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 212 DQKINMLYNELFQSLVPKEKYDKNDVILEVTAGrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAA 291
Cdd:pfam03462 75 EKRLEELEEELKLLLLPKDPNDDKNAILEIRAG--AGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEAT 152
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767978294 292 ARISGDGVYKHLKYEGGIHRVQRIPEvglSSRMQRIHTGTMSV 334
Cdd:pfam03462 153 FEISGEGAYGRLKFESGVHRVQRVPP---TESQGRIHTSFATV 192
|
|
| prfB |
TIGR00020 |
peptide chain release factor 2; In many but not all taxa, there is a conserved real ... |
164-382 |
1.29e-46 |
|
peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]
Pssm-ID: 272858 [Multi-domain] Cd Length: 364 Bit Score: 163.02 E-value: 1.29e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 164 ELAPLAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLyneLFQSLVpKEKYDKNDVILEVTA 243
Cdd:TIGR00020 57 ERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELKALEKKLAEL---ELRTML-SGEYDANNAYLTIQA 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 244 GrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSR 323
Cdd:TIGR00020 133 G--AGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGR 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 324 MqriHTGTMSVIVLPQ-PDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTG 382
Cdd:TIGR00020 211 R---HTSFASVFVMPEvDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTG 267
|
|
| PCRF |
smart00937 |
This domain is found in peptide chain release factors; |
190-306 |
2.96e-36 |
|
This domain is found in peptide chain release factors;
Pssm-ID: 214923 [Multi-domain] Cd Length: 116 Bit Score: 127.96 E-value: 2.96e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 190 KSLNKQDEKQLQELALEERQTI-DQKINMLYNELFQSLVPKEKYDKNDVILEVTAGrtTGGDICQQFTREIFDMYQNYSC 268
Cdd:smart00937 1 ELLEEEEDDEMRELAEEELEELeAELEEELEELLKLLLLPKDPNDDKNAILEIRAG--AGGDEAALFAGDLLRMYLRYAE 78
|
90 100 110
....*....|....*....|....*....|....*...
gi 767978294 269 YKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYE 306
Cdd:smart00937 79 RKGWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
131-382 |
5.71e-91 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 277.65 E-value: 5.71e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 131 MENLSKEYQTLEQCLQ--HIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELESMcksLNKQDEKQLQELALEER 208
Cdd:COG0216 6 LEALEERYEELEALLSdpEVISDQKRFRKLSKEYAELEPIVEAYREYKKLLEDIEEAKEL---LEEESDPEMREMAKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 209 QTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGrtTGGD---IcqqFTREIFDMYQNYSCYKHWQFELLNYTPADYG 285
Cdd:COG0216 83 EELEARLEELEEELKILLLPKDPNDDKNVILEIRAG--TGGDeaaL---FAGDLFRMYSRYAERKGWKVEILSASEGELG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 286 GLHHAAARISGDGVYKHLKYEGGIHRVQRIPEV---GlssrmqRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGA 362
Cdd:COG0216 158 GYKEVIFRISGEGVYSRLKFESGVHRVQRVPETesqG------RIHTSAATVAVLPEAEEVDVEINPKDLRIDTFRSSGA 231
|
250 260
....*....|....*....|
gi 767978294 363 GGQHVNKTDSAVRLVHIPTG 382
Cdd:COG0216 232 GGQHVNTTDSAVRITHLPTG 251
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
131-382 |
1.94e-88 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 271.18 E-value: 1.94e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 131 MENLSKEYQTLEQCLQ--HIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELESMcksLNKQDEKQLQELALEER 208
Cdd:PRK00591 8 LEALEERYEELEALLSdpEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEM---LEEESDPEMREMAKEEL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 209 QTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLH 288
Cdd:PRK00591 85 KELEERLEELEEELKILLLPKDPNDDKNVILEIRAG--TGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 289 HAAARISGDGVYKHLKYEGGIHRVQRIPEV---GlssrmqRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQ 365
Cdd:PRK00591 163 EVIAEISGDGVYSKLKFESGVHRVQRVPATesqG------RIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQ 236
|
250
....*....|....*..
gi 767978294 366 HVNKTDSAVRLVHIPTG 382
Cdd:PRK00591 237 HVNTTDSAVRITHLPTG 253
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
134-334 |
5.04e-68 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 213.01 E-value: 5.04e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 134 LSKEYQTLEQCLQHIPV--NEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELESMCKslnkqdEKQLQELALEERQTI 211
Cdd:pfam03462 1 LEERYEELEALLSDPDVwdDQKRAQKLSKEYSELEPIVEAYREYKQALEDLEEAKELLE------DPELAELAEEELEEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 212 DQKINMLYNELFQSLVPKEKYDKNDVILEVTAGrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAA 291
Cdd:pfam03462 75 EKRLEELEEELKLLLLPKDPNDDKNAILEIRAG--AGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEAT 152
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767978294 292 ARISGDGVYKHLKYEGGIHRVQRIPEvglSSRMQRIHTGTMSV 334
Cdd:pfam03462 153 FEISGEGAYGRLKFESGVHRVQRVPP---TESQGRIHTSFATV 192
|
|
| prfB |
TIGR00020 |
peptide chain release factor 2; In many but not all taxa, there is a conserved real ... |
164-382 |
1.29e-46 |
|
peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]
Pssm-ID: 272858 [Multi-domain] Cd Length: 364 Bit Score: 163.02 E-value: 1.29e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 164 ELAPLAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLyneLFQSLVpKEKYDKNDVILEVTA 243
Cdd:TIGR00020 57 ERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELKALEKKLAEL---ELRTML-SGEYDANNAYLTIQA 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 244 GrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSR 323
Cdd:TIGR00020 133 G--AGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGR 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 324 MqriHTGTMSVIVLPQ-PDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTG 382
Cdd:TIGR00020 211 R---HTSFASVFVMPEvDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTG 267
|
|
| PRK05589 |
PRK05589 |
peptide chain release factor 2; Provisional |
178-382 |
4.30e-40 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235520 [Multi-domain] Cd Length: 325 Bit Score: 144.56 E-value: 4.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 178 TEQAIEELESMCKSLNKQDEKQLQELaLEERQTIDQKINMLYNELFQSlvpkEKYDKNDVILEVTAGrtTGGDICQQFTR 257
Cdd:PRK05589 33 LRNRIEDIEVLCEMMSEEDDEMKKEI-ISEVKNIKEEIDRFKIETLLS----GEYDRNNAILTLHSG--VGGTDAQDWTE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 258 EIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQrihTGTMSVIVL 337
Cdd:PRK05589 106 MLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQ---TSFASVEVL 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 767978294 338 PQ-PDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTG 382
Cdd:PRK05589 183 PElTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTG 228
|
|
| PCRF |
smart00937 |
This domain is found in peptide chain release factors; |
190-306 |
2.96e-36 |
|
This domain is found in peptide chain release factors;
Pssm-ID: 214923 [Multi-domain] Cd Length: 116 Bit Score: 127.96 E-value: 2.96e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 190 KSLNKQDEKQLQELALEERQTI-DQKINMLYNELFQSLVPKEKYDKNDVILEVTAGrtTGGDICQQFTREIFDMYQNYSC 268
Cdd:smart00937 1 ELLEEEEDDEMRELAEEELEELeAELEEELEELLKLLLLPKDPNDDKNAILEIRAG--AGGDEAALFAGDLLRMYLRYAE 78
|
90 100 110
....*....|....*....|....*....|....*...
gi 767978294 269 YKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYE 306
Cdd:smart00937 79 RKGWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
|
| PRK06746 |
PRK06746 |
peptide chain release factor 2; Provisional |
164-381 |
6.38e-32 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 75726 [Multi-domain] Cd Length: 326 Bit Score: 122.92 E-value: 6.38e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 164 ELAPLAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINmlynELFQSLVPKEKYDKNDVILEVTA 243
Cdd:PRK06746 19 EANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMN----EYELQLLLSDPYDKNNAILELHP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 244 GrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSR 323
Cdd:PRK06746 95 G--AGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGR 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 767978294 324 MqriHTGTMSVIVLPQ-PDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPT 381
Cdd:PRK06746 173 R---HTSFVSCEVVPEfNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPT 228
|
|
| PRK08787 |
PRK08787 |
peptide chain release factor 2; Provisional |
163-382 |
7.12e-32 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 136970 [Multi-domain] Cd Length: 313 Bit Score: 122.46 E-value: 7.12e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 163 AELAPLAAIYQEiQETEQAIeelesmcksLNKQDEKQLQELALEerqtidqkinmlYNELFQSlvpkeKYDKNDVILEVT 242
Cdd:PRK08787 20 GELLDLAESEQD-EDTALAV---------IADLDKYQAHVEKLE------------FQRMFSG-----QMDGANAFVDIQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 243 AGrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSS 322
Cdd:PRK08787 73 AG--AGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDN 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767978294 323 RMqriHTGTMSVIVLPQPDE-VDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTG 382
Cdd:PRK08787 151 RR---HTSFTSVFVSPEVDDnIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTN 208
|
|
| PRK07342 |
PRK07342 |
peptide chain release factor 2; Provisional |
173-382 |
6.24e-29 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235997 [Multi-domain] Cd Length: 339 Bit Score: 114.98 E-value: 6.24e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 173 QEIQETEQAIEELESMCKSLNkqDEKQLQELALEER-----QTIDQKINMLYNEL----FQSLVPKEKyDKNDVILEVTA 243
Cdd:PRK07342 20 RERQQLDDSINGINHLEQTLN--DNIELIAMGEEEGdksivEDAEKTIRDLKDEIdrrqIDALLSGEA-DANDTYLEVHA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 244 GrtTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSR 323
Cdd:PRK07342 97 G--AGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGVHRLVRISPYDSNAR 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 324 MqriHTGTMSVIVLPQPDE-VDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTG 382
Cdd:PRK07342 175 R---HTSFASIWVYPVIDDnIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTG 231
|
|
| RF-1 |
pfam00472 |
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and ... |
341-382 |
3.74e-24 |
|
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Pssm-ID: 459823 [Multi-domain] Cd Length: 111 Bit Score: 95.57 E-value: 3.74e-24
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 767978294 341 DEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTG 382
Cdd:pfam00472 1 DEIEIEIDPKDLRIDTFRSSGAGGQHVNKTDSAVRLTHIPTG 42
|
|
| PrfB |
COG1186 |
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein ... |
344-378 |
1.64e-15 |
|
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein chain release factor PrfB is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 440799 [Multi-domain] Cd Length: 140 Bit Score: 72.86 E-value: 1.64e-15
10 20 30
....*....|....*....|....*....|....*
gi 767978294 344 DVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVH 378
Cdd:COG1186 20 EIEIPESDLRIDTYRASGAGGQNVNKVSSAVRLTH 54
|
|
| release_prfH |
TIGR03072 |
putative peptide chain release factor H; Members of this protein family are bacterial proteins ... |
349-382 |
6.15e-12 |
|
putative peptide chain release factor H; Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon. [Protein synthesis, Translation factors]
Pssm-ID: 213768 Cd Length: 200 Bit Score: 64.02 E-value: 6.15e-12
10 20 30
....*....|....*....|....*....|....
gi 767978294 349 PKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTG 382
Cdd:TIGR03072 105 EDEIRFETLRSSGPGGQHVNKTESAVRATHLASG 138
|
|
| PRK09256 |
PRK09256 |
aminoacyl-tRNA hydrolase; |
344-376 |
2.57e-06 |
|
aminoacyl-tRNA hydrolase;
Pssm-ID: 181730 [Multi-domain] Cd Length: 138 Bit Score: 46.30 E-value: 2.57e-06
10 20 30
....*....|....*....|....*....|...
gi 767978294 344 DVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRL 376
Cdd:PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVEL 39
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
119-259 |
4.94e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 4.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 119 KMLWKHKALQKYMENLSKEYQTLEQCLQHIpvnEENRRSLNRRHAEL-APLAAIYQEIQETEQAIEELESMCKSLNKQDE 197
Cdd:COG4372 91 AAQAELAQAQEELESLQEEAEELQEELEEL---QKERQDLEQQRKQLeAQIAELQSEIAEREEELKELEEQLESLQEELA 167
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767978294 198 KQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFTREI 259
Cdd:COG4372 168 ALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEA 229
|
|
| EAD9 |
pfam19962 |
Effector-associated domain 9; Effector-associated domains (EADs) are predicted to function as ... |
123-185 |
7.50e-04 |
|
Effector-associated domain 9; Effector-associated domains (EADs) are predicted to function as adaptor domains mediating protein-protein interactions. The EADs show a characteriztic architectural pattern. One copy is always fused, typically to the N- or C-terminus, of a core component of a biological conflict system; examples include VMAP, iSTAND, or GAP1. Further copies of the same EAD are fused to either effector or signal-transducing domains, or additional EADs. EAD pairs are frequently observed together on the genome in conserved gene neighborhoods, but can also be severed from such neighborhoods and located in distant regions, indicating EAD-EAD protein domain coupling attenuates collinear transcription requirements.
Pssm-ID: 437794 [Multi-domain] Cd Length: 62 Bit Score: 37.58 E-value: 7.50e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767978294 123 KHKALQKYMENLSKEYQTLEQCLQHiPVNEENRRSLNRRhaelapLAAIYQEIQETEQAIEEL 185
Cdd:pfam19962 7 KRKFLEKRLAALEEEYEAVNNQLNY-TLDAVDRNRLQRQ------LERLEQEMEKVESELNQL 62
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
123-222 |
4.33e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 38.98 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 123 KHKALQKYMENLSKEYQTLEQCLQHIPVNEEnRRSLNRRHAELAP-LAAIYQEIQETEQAIEELESMCKSLNK------- 194
Cdd:COG4717 103 ELEELEAELEELREELEKLEKLLQLLPLYQE-LEALEAELAELPErLEELEERLEELRELEEELEELEAELAElqeelee 181
|
90 100 110
....*....|....*....|....*....|....*
gi 767978294 195 -------QDEKQLQELAlEERQTIDQKINMLYNEL 222
Cdd:COG4717 182 lleqlslATEEELQDLA-EELEELQQRLAELEEEL 215
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
125-243 |
4.66e-03 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 37.51 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 125 KALQKYMENLSKEYQTLEQCLQhipvneENRRSLNRrhaelaplaaiyQEIQETEQAIEELESMCKSLNKQDEKQLQELA 204
Cdd:COG2825 53 KKRQAELQKLEKELQALQEKLQ------KEAATLSE------------EERQKKERELQKKQQELQRKQQEAQQDLQKRQ 114
|
90 100 110
....*....|....*....|....*....|....*....
gi 767978294 205 LEERQTIDQKInmlyNELFQSLVPKEKYdknDVILEVTA 243
Cdd:COG2825 115 QELLQPILEKI----QKAIKEVAKEEGY---DLVLDKSA 146
|
|
| OmpH |
pfam03938 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
141-244 |
5.84e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 461098 [Multi-domain] Cd Length: 140 Bit Score: 36.79 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 141 LEQCLQHIPVNEENRRSLNRRHAEL-APLAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALE---ERQTIDQKIN 216
Cdd:pfam03938 7 MQKILEESPEGKAAQAQLEKKFKKRqAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQElqqLQQKAQQELQ 86
|
90 100 110
....*....|....*....|....*....|....*....
gi 767978294 217 MLYNELFQSLVPK-----------EKYdknDVILEVTAG 244
Cdd:pfam03938 87 KKQQELLQPIQDKinkaikevakeKGY---DLVLDKSGG 122
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
123-219 |
8.83e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 37.82 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767978294 123 KHKALQKYMENLSKEYQTLEQCLQHipvNEENRRSLNRRHAEL-APLAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQ 201
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAA---LKKEEKALLKQLAALeRRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90
....*....|....*...
gi 767978294 202 ELAlEERQTIDQKINMLY 219
Cdd:COG4942 98 ELE-AQKEELAELLRALY 114
|
|
| |
