NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|767936801|ref|XP_011542039|]
View 

synphilin-1 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
369-556 2.27e-22

Ankyrin repeat [Signal transduction mechanisms];


:

Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 98.49  E-value: 2.27e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  369 ILNIVKEGQISLLPHLAADNLDKIHDENGNNLLHIAASQGHAECLQHLTSLmGEDcLNERNTEKLTPAGLAIKNGQLECV 448
Cdd:COG0666    59 LAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAAARNGDLEIVKLLLEA-GAD-VNARDKDGETPLHLAAYNGNLEIV 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  449 RWMVsetEAIAEL-SCSKDFPSLIHYAGCYGQEKILLWLLqfmqEQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEYG 527
Cdd:COG0666   137 KLLL---EAGADVnAQDNDGNTPLHLAAANGNLEIVKLLL----EAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAG 209

                         170       180
                  ....*....|....*....|....*....
gi 767936801  528 ANVTMQNHAGEKPSQSAERQGHTLCSRYL 556
Cdd:COG0666   210 ADVNAKDNDGKTALDLAAENGNLEIVKLL 238
SNCAIP_SNCA_bd super family cl25051
Synphilin-1 alpha-Synuclein-binding domain; This coiled-coil domain found in Synphilin-1 is ...
 559-602 1.21e-14

Synphilin-1 alpha-Synuclein-binding domain; This coiled-coil domain found in Synphilin-1 is responsible for binding to alpha-Synuclein.


The actual alignment was detected with superfamily member pfam16700:

Pssm-ID: 435527  Cd Length: 45  Bit Score: 68.61  E-value: 1.21e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 767936801   559 VETCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGK 602
Cdd:pfam16700    1 VETCMSLASQVVKLTKQLHEQTAARIAIQKHLQLLFDPQDAEGR 44
 
Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
369-556 2.27e-22

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 98.49  E-value: 2.27e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  369 ILNIVKEGQISLLPHLAADNLDKIHDENGNNLLHIAASQGHAECLQHLTSLmGEDcLNERNTEKLTPAGLAIKNGQLECV 448
Cdd:COG0666    59 LAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAAARNGDLEIVKLLLEA-GAD-VNARDKDGETPLHLAAYNGNLEIV 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  449 RWMVsetEAIAEL-SCSKDFPSLIHYAGCYGQEKILLWLLqfmqEQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEYG 527
Cdd:COG0666   137 KLLL---EAGADVnAQDNDGNTPLHLAAANGNLEIVKLLL----EAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAG 209

                         170       180
                  ....*....|....*....|....*....
gi 767936801  528 ANVTMQNHAGEKPSQSAERQGHTLCSRYL 556
Cdd:COG0666   210 ADVNAKDNDGKTALDLAAENGNLEIVKLL 238
SNCAIP_SNCA_bd pfam16700
Synphilin-1 alpha-Synuclein-binding domain; This coiled-coil domain found in Synphilin-1 is ...
 559-602 1.21e-14

Synphilin-1 alpha-Synuclein-binding domain; This coiled-coil domain found in Synphilin-1 is responsible for binding to alpha-Synuclein.


Pssm-ID: 435527  Cd Length: 45  Bit Score: 68.61  E-value: 1.21e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 767936801   559 VETCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGK 602
Cdd:pfam16700    1 VETCMSLASQVVKLTKQLHEQTAARIAIQKHLQLLFDPQDAEGR 44
Ank_2 pfam12796
Ankyrin repeats (3 copies);
401-534 2.21e-11

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 60.90  E-value: 2.21e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801   401 LHIAASQGHAECLQHLTSLMGEdcLNERNTEKLTPAGLAIKNGQLECVRWMVSETEAiaelscskdfpslihyagcygqe 480
Cdd:pfam12796    1 LHLAAKNGNLELVKLLLENGAD--ANLQDKNGRTALHLAAKNGHLEIVKLLLEHADV----------------------- 55

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 767936801   481 killwllqfmqeqgisldEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQN 534
Cdd:pfam12796   56 ------------------NLKDNGRTALHYAARSGHLEIVKLLLEKGADINVKD 91
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 469-557 3.77e-04

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 44.18  E-value: 3.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  469 SLIHYAGCYGQEKILLWLLQFMQEQGISldevDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQG 548
Cdd:PHA02874  126 TFLHYAIKKGDLESIKMLFEYGADVNIE----DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG 201


                  ....*....
gi 767936801  549 HTLCSRYLV 557
Cdd:PHA02874  202 DYACIKLLI 210
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 503-532 1.70e-03

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 36.80  E-value: 1.70e-03
                            10        20        30
                    ....*....|....*....|....*....|
gi 767936801    503 DGNSAVHVASQHGYLGCIQTLVEYGANVTM 532
Cdd:smart00248    1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
 
Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
369-556 2.27e-22

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 98.49  E-value: 2.27e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  369 ILNIVKEGQISLLPHLAADNLDKIHDENGNNLLHIAASQGHAECLQHLTSLmGEDcLNERNTEKLTPAGLAIKNGQLECV 448
Cdd:COG0666    59 LAAALAGDLLVALLLLAAGADINAKDDGGNTLLHAAARNGDLEIVKLLLEA-GAD-VNARDKDGETPLHLAAYNGNLEIV 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  449 RWMVsetEAIAEL-SCSKDFPSLIHYAGCYGQEKILLWLLqfmqEQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEYG 527
Cdd:COG0666   137 KLLL---EAGADVnAQDNDGNTPLHLAAANGNLEIVKLLL----EAGADVNARDNDGETPLHLAAENGHLEIVKLLLEAG 209

                         170       180
                  ....*....|....*....|....*....
gi 767936801  528 ANVTMQNHAGEKPSQSAERQGHTLCSRYL 556
Cdd:COG0666   210 ADVNAKDNDGKTALDLAAENGNLEIVKLL 238
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
369-557 1.67e-16

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 81.15  E-value: 1.67e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  369 ILNIVKEGQISLLPHLAADNLDKIHDENGNNLLHIAASQGHAECLQHLtsLMGEDCLNERNTEKLTPAGLAIKNGQLECV 448
Cdd:COG0666    26 LAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLL--LAAGADINAKDDGGNTLLHAAARNGDLEIV 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  449 RWMVsetEAIAEL-SCSKDFPSLIHYAGCYGQEKILLWLLqfmqEQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEYG 527
Cdd:COG0666   104 KLLL---EAGADVnARDKDGETPLHLAAYNGNLEIVKLLL----EAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAG 176

                         170       180       190
                  ....*....|....*....|....*....|
gi 767936801  528 ANVTMQNHAGEKPSQSAERQGHTLCSRYLV 557
Cdd:COG0666   177 ADVNARDNDGETPLHLAAENGHLEIVKLLL 206
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
369-556 6.72e-15

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 76.53  E-value: 6.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  369 ILNIVKEGQISLLPHLAADNLD-KIHDENGNNLLHIAASQGHAECLQHLTSLmGEDcLNERNTEKLTPAGLAIKNGQLEC 447
Cdd:COG0666    91 LHAAARNGDLEIVKLLLEAGADvNARDKDGETPLHLAAYNGNLEIVKLLLEA-GAD-VNAQDNDGNTPLHLAAANGNLEI 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  448 VRWMVsetEAIAEL-SCSKDFPSLIHYAGCYGQEKILLWLLqfmqEQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEY 526
Cdd:COG0666   169 VKLLL---EAGADVnARDNDGETPLHLAAENGHLEIVKLLL----EAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEA 241

                         170       180       190
                  ....*....|....*....|....*....|
gi 767936801  527 GANVTMQNHAGEKPSQSAERQGHTLCSRYL 556
Cdd:COG0666   242 GADLNAKDKDGLTALLLAAAAGAALIVKLL 271
SNCAIP_SNCA_bd pfam16700
Synphilin-1 alpha-Synuclein-binding domain; This coiled-coil domain found in Synphilin-1 is ...
 559-602 1.21e-14

Synphilin-1 alpha-Synuclein-binding domain; This coiled-coil domain found in Synphilin-1 is responsible for binding to alpha-Synuclein.


Pssm-ID: 435527  Cd Length: 45  Bit Score: 68.61  E-value: 1.21e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 767936801   559 VETCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGK 602
Cdd:pfam16700    1 VETCMSLASQVVKLTKQLHEQTAARIAIQKHLQLLFDPQDAEGR 44
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
384-557 1.69e-11

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 66.13  E-value: 1.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  384 LAADNLDKIHDENGNNLLHIAASQGHAECLQHLTSLMGEDCLNERNTEKLTPAGLAIKNGQLECVRWMVSETEAIAELSc 463
Cdd:COG0666     6 LLLLLLLAALLLLLLLALLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKD- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  464 sKDFPSLIHYAGCYGQEKILLWLLqfmqEQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQS 543
Cdd:COG0666    85 -DGGNTLLHAAARNGDLEIVKLLL----EAGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHL 159

                         170
                  ....*....|....
gi 767936801  544 AERQGHTLCSRYLV 557
Cdd:COG0666   160 AAANGNLEIVKLLL 173
Ank_2 pfam12796
Ankyrin repeats (3 copies);
401-534 2.21e-11

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 60.90  E-value: 2.21e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801   401 LHIAASQGHAECLQHLTSLMGEdcLNERNTEKLTPAGLAIKNGQLECVRWMVSETEAiaelscskdfpslihyagcygqe 480
Cdd:pfam12796    1 LHLAAKNGNLELVKLLLENGAD--ANLQDKNGRTALHLAAKNGHLEIVKLLLEHADV----------------------- 55

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 767936801   481 killwllqfmqeqgisldEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQN 534
Cdd:pfam12796   56 ------------------NLKDNGRTALHYAARSGHLEIVKLLLEKGADINVKD 91
Ank_2 pfam12796
Ankyrin repeats (3 copies);
373-453 4.87e-08

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 51.66  E-value: 4.87e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801   373 VKEGQISLLPHLAADNLDK-IHDENGNNLLHIAASQGHAECLQHLTSLMGEDClnerNTEKLTPAGLAIKNGQLECVRWM 451
Cdd:pfam12796    5 AKNGNLELVKLLLENGADAnLQDKNGRTALHLAAKNGHLEIVKLLLEHADVNL----KDNGRTALHYAARSGHLEIVKLL 80


                   ..
gi 767936801   452 VS 453
Cdd:pfam12796   81 LE 82
Ank_4 pfam13637
Ankyrin repeats (many copies);
469-524 9.45e-06

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 43.80  E-value: 9.45e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 767936801   469 SLIHYAGCYGQEKILLWLLQFmqeqGISLDEVDQDGNSAVHVASQHGYLGCIQTLV 524
Cdd:pfam13637    3 TALHAAAASGHLELLRLLLEK----GADINAVDGNGETALHFAASNGNVEVLKLLL 54
Ank_4 pfam13637
Ankyrin repeats (many copies);
504-557 1.33e-04

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 40.72  E-value: 1.33e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 767936801   504 GNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRYLV 557
Cdd:pfam13637    1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 469-557 3.77e-04

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 44.18  E-value: 3.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  469 SLIHYAGCYGQEKILLWLLQFMQEQGISldevDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQG 548
Cdd:PHA02874  126 TFLHYAIKKGDLESIKMLFEYGADVNIE----DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG 201


                  ....*....
gi 767936801  549 HTLCSRYLV 557
Cdd:PHA02874  202 DYACIKLLI 210
Ank_4 pfam13637
Ankyrin repeats (many copies);
397-452 5.64e-04

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 38.79  E-value: 5.64e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 767936801   397 GNNLLHIAASQGHAECLQHLTSLmGEDClNERNTEKLTPAGLAIKNGQLECVRWMV 452
Cdd:pfam13637    1 ELTALHAAAASGHLELLRLLLEK-GADI-NAVDGNGETALHFAASNGNVEVLKLLL 54
PTZ00322 PTZ00322
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
 492-548 9.24e-04

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional


Pssm-ID: 140343 [Multi-domain]  Cd Length: 664  Bit Score: 43.35  E-value: 9.24e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 767936801  492 EQGISLDEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQG 548
Cdd:PTZ00322  103 TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG 159
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 364-544 1.22e-03

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 42.64  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  364 KKVKSILNI-VKEGQISLLPHLAADNLD-KIHDENGNNLLHIAASQGHAECLQHLtsLMGEDCLNERNTEKLTPAGLAIK 441
Cdd:PHA02874  122 AELKTFLHYaIKKGDLESIKMLFEYGADvNIEDDNGCYPIHIAIKHNFFDIIKLL--LEKGAYANVKDNNGESPLHNAAE 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  442 NGQLECVRWMVSETEAIAeLSCSKDFPSLiHYAGCYGQEKILLWLlqfmqeQGISLDEVDQDGNSAVHVASQHG-YLGCI 520
Cdd:PHA02874  200 YGDYACIKLLIDHGNHIM-NKCKNGFTPL-HNAIIHNRSAIELLI------NNASINDQDIDGSTPLHHAINPPcDIDII 271

                         170       180
                  ....*....|....*....|....
gi 767936801  521 QTLVEYGANVTMQNHAGEKPSQSA 544
Cdd:PHA02874  272 DILLYHKADISIKDNKGENPIDTA 295
Ank_2 pfam12796
Ankyrin repeats (3 copies);
509-557 1.30e-03

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 38.94  E-value: 1.30e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 767936801   509 HVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRYLV 557
Cdd:pfam12796    2 HLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLL 50
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 503-532 1.70e-03

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 36.80  E-value: 1.70e-03
                            10        20        30
                    ....*....|....*....|....*....|
gi 767936801    503 DGNSAVHVASQHGYLGCIQTLVEYGANVTM 532
Cdd:smart00248    1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 425-544 4.04e-03

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 40.72  E-value: 4.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936801  425 LNERNTEKLTPAGLAIKNGQLECVRWMVSETEAIAELSCSKDFPslIHYAGCYGQEKILLWLLqfmqEQGISLDEVDQDG 504
Cdd:PHA02874  117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYP--IHIAIKHNFFDIIKLLL----EKGAYANVKDNNG 190

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 767936801  505 NSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSA 544
Cdd:PHA02874  191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230
Ank_5 pfam13857
Ankyrin repeats (many copies);
394-439 7.46e-03

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 35.79  E-value: 7.46e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 767936801   394 DENGNNLLHIAASQGHAECLQHLtSLMGEDClNERNTEKLTPAGLA 439
Cdd:pfam13857   13 DGEGYTPLHVAAKYGALEIVRVL-LAYGVDL-NLKDEEGLTALDLA 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH