|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
480-732 |
8.52e-43 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 157.20 E-value: 8.52e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 480 YNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTR---DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEK 556
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRrrgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 557 KEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAI 636
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 637 KLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELrLA 715
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDyLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LA 250
|
250
....*....|....*..
gi 1034581748 716 LAQVLAVMGQTKEAEKM 732
Cdd:COG2956 251 LADLLERKEGLEAALAL 267
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
503-740 |
1.63e-39 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 146.69 E-value: 1.63e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 503 LKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYS 579
Cdd:COG0457 1 LELDPDDAEAYNNLGLAyrrLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 580 SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGEN 659
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 660 SMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSE 739
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
.
gi 1034581748 740 E 740
Cdd:COG0457 241 Y 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
464-706 |
2.71e-39 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 147.18 E-value: 2.71e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 464 LFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQH 540
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDylkAGLLDRAEELLEKLLELDPDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 541 NRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLV 620
Cdd:COG2956 110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 621 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQ 700
Cdd:COG2956 190 EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269
|
....*.
gi 1034581748 701 EAAALQ 706
Cdd:COG2956 270 RQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
519-772 |
6.43e-38 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 142.95 E-value: 6.43e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 519 LTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIY 598
Cdd:COG2956 20 LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 599 QTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAE 677
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDpDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 678 ILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVsEETGCLECYRLLSAIYSKQ 757
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-ELDPSDDLLLALADLLERK 258
|
250
....*....|....*
gi 1034581748 758 ENHDKALDAIDKALQ 772
Cdd:COG2956 259 EGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
545-803 |
9.45e-38 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 142.56 E-value: 9.45e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 545 FNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGL 624
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 625 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAA 703
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 704 ALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVI-- 781
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLal 251
|
250 260
....*....|....*....|..
gi 1034581748 782 SELFFTKGNQLREQNLLDKAFE 803
Cdd:COG2956 252 ADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
473-705 |
1.38e-37 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 141.30 E-value: 1.38e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 473 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGN 549
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAylrLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 550 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 629
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034581748 630 AHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAAL 705
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
616-871 |
1.96e-37 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 141.79 E-value: 1.96e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 616 GVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEE 694
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDpDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 695 ALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLK 774
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 775 PKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLkE 854
Cdd:COG2956 175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249
|
250
....*....|....*..
gi 1034581748 855 NLAKLDRLEKRLQEVRE 871
Cdd:COG2956 250 ALADLLERKEGLEAALA 266
|
|
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
284-358 |
1.82e-36 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 131.50 E-value: 1.82e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034581748 284 GGSMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPVTLCYDWQVGSIPLVETIWDMRNLATIFLAVVMA 358
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
494-718 |
2.57e-33 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 137.05 E-value: 2.57e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 494 EAIYHYRTALKLYPRHASALNNLGtltrDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPE 573
Cdd:COG3914 69 AAAAALLLLAALLELAALLLQALG----RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 574 FADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLY 653
Cdd:COG3914 145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034581748 654 RSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQ 718
Cdd:COG3914 225 RQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPP 289
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
462-868 |
2.13e-32 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 135.60 E-value: 2.13e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 462 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 538
Cdd:TIGR02917 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAylaLGDFEKAAEYLAKATELDP 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 539 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 618
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 619 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA--HKAEILSpLGALYYNTGRYEEAL 696
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpkNLRAILA-LAGLYLRTGNEEEAV 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 697 QIYQEAAALQPSQRELRLALAQVLAVMGQTKeaekmtnhivseetgclecyrllsaiyskqenhdKALDAIDKALQLKPK 776
Cdd:TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLK----------------------------------KALAILNEAADAAPD 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 777 DPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENL 856
Cdd:TIGR02917 600 SP----EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675
|
410
....*....|..
gi 1034581748 857 AKLDRLEKRLQE 868
Cdd:TIGR02917 676 AQLLLAAKRTES 687
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
473-874 |
4.99e-30 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 127.89 E-value: 4.99e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 473 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHPQHNRALFNLGN 549
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEgnpDDAIQRFEKVLTIDPKNLRAILALAG 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 550 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 629
Cdd:TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 630 AHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV-AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPS 708
Cdd:TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELkPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 709 QRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLlSAIYSKQENHDKALDAIDKALQLKPKDPKVISELfftk 788
Cdd:TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL---- 776
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 789 GNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHiKGKYVSARAYYERALQLVPDskllkeNLAKLDRLEKRLQE 868
Cdd:TIGR02917 777 AELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL-ELKDPRALEYAERALKLAPN------IPAILDTLGWLLVE 849
|
....*.
gi 1034581748 869 VREKDQ 874
Cdd:TIGR02917 850 KGEADR 855
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
472-712 |
4.12e-29 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 123.95 E-value: 4.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 472 LPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHPQHNRALFNLG 548
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAallALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 549 NLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKA 628
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 629 VAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQP 707
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDpDNADAHSNLLFALRQACDWEVYDRFEELLAALAR 245
|
....*
gi 1034581748 708 SQREL 712
Cdd:COG3914 246 GPSEL 250
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
606-845 |
5.89e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 116.26 E-value: 5.89e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 606 PDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGA 684
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 685 LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKAL 764
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 765 DAIDKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQ 844
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
.
gi 1034581748 845 L 845
Cdd:COG0457 245 A 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
462-671 |
6.59e-29 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 117.14 E-value: 6.59e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 462 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 538
Cdd:COG2956 62 IRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIyeqEGDWEKAIEVLERLLKLGP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 539 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 618
Cdd:COG2956 142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1034581748 619 LVDTGLPEKAVAHYQQAIKLSPSHHVAMvNLGRLYRSLGENSMAEEWYKRALQ 671
Cdd:COG2956 222 YEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
636-874 |
2.94e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 114.33 E-value: 2.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 636 IKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQPsqrelrl 714
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDpDDAEALYNLGLAYLRLGRYEEALADYEQALELDP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 715 alaqvlavmgqtkeaekmtnhivseetGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLRE 794
Cdd:COG0457 74 ---------------------------DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA----EALYNLGLALLE 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 795 QNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVREKDQ 874
Cdd:COG0457 123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
462-599 |
5.54e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 113.56 E-value: 5.54e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 462 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 538
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAlqaLGRYEEALEDYDKALELDP 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034581748 539 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQ 599
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
539-671 |
2.98e-24 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 99.11 E-value: 2.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 539 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVF 618
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1034581748 619 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 671
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
489-731 |
4.30e-24 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 109.02 E-value: 4.30e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 489 QGRNKEAIYHYRTALKLYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLK 565
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLAdayAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 566 DSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFL------------------------VD 621
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLasgntaeavktleawlkthpndavLR 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 622 TGLPE---------KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLgENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGR 691
Cdd:TIGR02917 774 TALAElylaqkdydKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLApNIPAILDTLGWLLVEKGE 852
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1034581748 692 YEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 731
Cdd:TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
521-866 |
1.62e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 107.09 E-value: 1.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 521 RDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQT 600
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 601 GIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHV-----AMVNLGRlyrslGENSMAEEWYKRALQVAHK 675
Cdd:TIGR02917 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLahylkALVDFQK-----KNYEDARETLQDALKSAPE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 676 AEILSPL-GALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIY 754
Cdd:TIGR02917 294 YLPALLLaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 755 SKQENHDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQnlldKAFESYRVAVQLN---------------------- 812
Cdd:TIGR02917 374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS----EAIADLETAAQLDpelgradlllilsylrsgqfdk 449
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034581748 813 ------------PDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRL 866
Cdd:TIGR02917 450 alaaakklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
476-608 |
2.42e-23 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 96.41 E-value: 2.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 476 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLK 552
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIllqLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034581748 553 SQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDS 608
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
621-822 |
4.86e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 105.08 E-value: 4.86e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 621 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGAL----------YYNTG 690
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLaallelaallLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 691 RYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKA 770
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1034581748 771 LQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNM 822
Cdd:COG3914 173 LELDPDNAEALNNL----GNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
522-642 |
9.32e-22 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 92.18 E-value: 9.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 522 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 601
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1034581748 602 IKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH 642
Cdd:COG4783 99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
526-721 |
1.26e-21 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 94.71 E-value: 1.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 526 AKMYYQRALQLHPQHNRalfnlgnllksqekkEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNC 605
Cdd:TIGR02521 31 AKIRVQLALGYLEQGDL---------------EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 606 PDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMV--NLGRLYRSLGENSMAEEWYKRALQV-AHKAEILSPL 682
Cdd:TIGR02521 96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSleNAGLCALKAGDFDKAEKYLTRALQIdPQRPESLLEL 175
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1034581748 683 GALYYNTGRYEEA---LQIYQEAAALQPSQRELRLALAQVLA 721
Cdd:TIGR02521 176 AELYYLRGQYKDArayLERYQQTYNQTAESLWLGIRIARALG 217
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
610-731 |
2.03e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 88.33 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 610 DLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYN 688
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLK 84
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1034581748 689 TGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 731
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
507-819 |
2.05e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 96.60 E-value: 2.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 507 PRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGpEFADAYSSLASLLA 586
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAG-EAAAAAAALLLLAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 587 EQERFKEAeeiyqtgikncpdssdlhnnygvfLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGensmaeewy 666
Cdd:COG3914 80 LLELAALL------------------------LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG--------- 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 667 kralqvahkaeilsplgalyyntgRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEC 746
Cdd:COG3914 127 ------------------------RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA 182
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034581748 747 YRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELFFTKGNQLREQNLldKAFESYRVAVQLNPDQAQAW 819
Cdd:COG3914 183 LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY--DRFEELLAALARGPSELSPF 253
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
645-777 |
2.71e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 87.94 E-value: 2.71e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 645 AMVNLGRLYRSLGENSMAEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVM 723
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDpDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1034581748 724 GQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 777
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
708-849 |
1.79e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 85.63 E-value: 1.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 708 SQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFT 787
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP----EARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034581748 788 KGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDS 849
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
747-859 |
1.15e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 82.75 E-value: 1.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 747 YRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQ 826
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL----AEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|....*.
gi 1034581748 827 HIKGKYVSARAYYERALQLVPDS---KLLKENLAKL 859
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
465-587 |
2.00e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 82.36 E-value: 2.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 465 FRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHN 541
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAllaAGDTEEAEELLERALALDPDNP 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1034581748 542 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYsSLASLLAE 587
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-LLEASIAE 130
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
627-731 |
5.06e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 81.21 E-value: 5.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 627 KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAAL 705
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*.
gi 1034581748 706 QPSQRELRLALAQVLAVMGQTKEAEK 731
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
494-610 |
8.71e-18 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.44 E-value: 8.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 494 EAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKY 570
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAylrLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1034581748 571 GPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSD 610
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
593-719 |
1.28e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 80.05 E-value: 1.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 593 EAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV 672
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1034581748 673 AHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQV 719
Cdd:COG4235 81 DPDnPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
469-637 |
2.08e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 82.27 E-value: 2.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 469 VQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNRALF 545
Cdd:COG4785 66 ALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGlayLLLGDYDAALEDFDRALELDPDYAYAYL 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 546 NLGNLLKSQEKKEEAITLLKDSIKYGPEfaDAYSSLASLLAEQE-RFKEAEEiyqtgikncpdssDLHNNYGVFLVDTGL 624
Cdd:COG4785 146 NRGIALYYLGRYELAIADLEKALELDPN--DPERALWLYLAERKlDPEKALA-------------LLLEDWATAYLLQGD 210
|
170
....*....|...
gi 1034581748 625 PEKAVAHYQQAIK 637
Cdd:COG4785 211 TEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
525-640 |
3.73e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 78.51 E-value: 3.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 525 EAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKN 604
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 1034581748 605 CPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSP 640
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
462-574 |
4.18e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 78.70 E-value: 4.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 462 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 538
Cdd:COG4783 24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAllkAGDYDEALALLEKALKLDP 103
|
90 100 110
....*....|....*....|....*....|....*.
gi 1034581748 539 QHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEF 574
Cdd:COG4783 104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
495-704 |
6.15e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 80.73 E-value: 6.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 495 AIYHYRTALKLYPRHASALNNLGT---LTRDTAEAKMYYQRAlQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYG 571
Cdd:COG4785 25 LLAALLFAAVLALAIALADLALALaaaALAAAALAAERIDRA-LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 572 PEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGR 651
Cdd:COG4785 104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1034581748 652 LYRSLGENsmaeewykralqvAHKAEILSPLGALYYNTGRYEEALQIYQEAAA 704
Cdd:COG4785 184 AERKLDPE-------------KALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
559-673 |
6.93e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 77.74 E-value: 6.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 559 EAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKL 638
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 1034581748 639 SPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA 673
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
522-671 |
1.60e-16 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 77.69 E-value: 1.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 522 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 601
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 602 IKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 671
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
522-607 |
1.61e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 75.59 E-value: 1.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 522 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKdSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTG 601
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 1034581748 602 IKNCPD 607
Cdd:COG3063 86 LELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
741-871 |
1.86e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.77 E-value: 1.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 741 TGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWM 820
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1034581748 821 NMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 871
Cdd:COG4783 77 NLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
625-848 |
2.75e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.59 E-value: 2.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 625 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV-------------------------------- 672
Cdd:TIGR02917 38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLgypknqvlpllarayllqgkfqqvldelpgkt 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 673 ----AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYR 748
Cdd:TIGR02917 118 llddEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 749 LLSAIYSKQENHDKALDAIDKALQLKPKDPKViseLFFtKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHI 828
Cdd:TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNIAV---LLA-LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQ 273
|
250 260
....*....|....*....|
gi 1034581748 829 KGKYVSARAYYERALQLVPD 848
Cdd:TIGR02917 274 KKNYEDARETLQDALKSAPE 293
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
584-676 |
3.07e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 74.82 E-value: 3.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 584 LLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAhYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAE 663
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|...
gi 1034581748 664 EWYKRALQVAHKA 676
Cdd:COG3063 80 AYLERALELDPSA 92
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
619-711 |
8.44e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 73.28 E-value: 8.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 619 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEwYKRALQVA-HKAEILSPLGALYYNTGRYEEALQ 697
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDpNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 1034581748 698 IYQEAAALQPSQRE 711
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
462-591 |
1.95e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 80.42 E-value: 1.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 462 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDT---AEAKMYYQRALQLHP 538
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrlEEAIAAYRRALELDP 211
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034581748 539 QHNRALFNLGNLLKSQ------EKKEEAITLLKDSIKYGPEFADAYS---SLASLLAEQERF 591
Cdd:COG3914 212 DNADAHSNLLFALRQAcdwevyDRFEELLAALARGPSELSPFALLYLpddDPAELLALARAW 273
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
488-573 |
2.85e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 72.13 E-value: 2.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 488 DQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMyYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLL 564
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLlleQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 1034581748 565 KDSIKYGPE 573
Cdd:COG3063 83 ERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
753-848 |
3.24e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 71.74 E-value: 3.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 753 IYSKQENHDKALDAIDKALQLKPKDPKVISELfftkGNQLREQNLLDKAfESYRVAVQLNPDQAQAWMNMGGIQHIKGKY 832
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL----GLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDY 75
|
90
....*....|....*.
gi 1034581748 833 VSARAYYERALQLVPD 848
Cdd:COG3063 76 DEALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
482-606 |
2.42e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 71.53 E-value: 2.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 482 YANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGtltrDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAI 561
Cdd:COG5010 33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG----DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1034581748 562 TLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCP 606
Cdd:COG5010 109 EYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
450-594 |
3.06e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 77.05 E-value: 3.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 450 KTVKQNEIWLSREslfrsgvqtlPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG--TLTRDTAEAK 527
Cdd:TIGR02917 754 EAVKTLEAWLKTH----------PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAwlYLELKDPRAL 823
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034581748 528 MYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEA 594
Cdd:TIGR02917 824 EYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
691-847 |
3.20e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 71.14 E-value: 3.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 691 RYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKA 770
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034581748 771 LQLKPKDPKVISELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVP 847
Cdd:COG5010 81 LQLDPNNPELYYNL----ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
488-849 |
3.22e-14 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 77.05 E-value: 3.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 488 DQGRNKEAIYHYRTALKLYPRHASALNNLG-TLTR--DTAEAKMYYQRALQLHPQHnralFNLG---NLLKSQekkeeai 561
Cdd:PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGqAYSQqgDRARAVAQFEKALALDPHS----SNRDkweSLLKVN------- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 562 tllkdsiKYGPEFADAYSSLasllaEQERFKEAEEIYQTGIKNCPDSSdlhnnYGVF-LVDTGLPEK----AVAHYQQAI 636
Cdd:PRK11447 350 -------RYWLLIQQGDAAL-----KANNLAQAERLYQQARQVDNTDS-----YAVLgLGDVAMARKdyaaAERYYQQAL 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 637 KLSPSHHVAMVNLGRLYR------------SLG---ENSMAEewYKRALQVAhkaeILSPLGALYYNTGRYEEALQIYQE 701
Cdd:PRK11447 413 RMDPGNTNAVRGLANLYRqqspekalafiaSLSasqRRSIDD--IERSLQND----RLAQQAEALENQGKWAQAAELQRQ 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 702 AAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEcYRLLSAIYSKQENHDKALDAIDKALQ-------LK 774
Cdd:PRK11447 487 RLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE-QVYAYGLYLSGSDRDRAALAHLNTLPraqwnsnIQ 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 775 PKDPKVISELFFTKGNQLREQ-------NLLDKAFESYRVAVQLnPDQAQAwmnmggiqhiKGKYVSARAYYERALQLVP 847
Cdd:PRK11447 566 ELAQRLQSDQVLETANRLRDSgkeaeaeALLRQQPPSTRIDLTL-ADWAQQ----------RGDYAAARAAYQRVLTREP 634
|
..
gi 1034581748 848 DS 849
Cdd:PRK11447 635 GN 636
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
483-707 |
6.33e-14 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 73.79 E-value: 6.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 483 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDTAEakmyYQRALQL----------HPQHNRALFNLG--NL 550
Cdd:COG3071 92 AELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD----WEELLELlpalrkhkalSAEEAQALERRAylGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 551 LKSQEKKEEAITL----LKDSIKYGPEFADAYsslASLLAEQERFKEAEEIYQTGIKNCPDSsDLHNNYGvfLVDTGLPE 626
Cdd:COG3071 168 LRQAARDAEALKAlwkaLPRAERRDPELAAAY---ARALIALGDHDEAERLLREALKRQWDP-RLVRLYG--RLQGGDPA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 627 KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQ 706
Cdd:COG3071 242 KQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALA 321
|
.
gi 1034581748 707 P 707
Cdd:COG3071 322 L 322
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
502-640 |
1.47e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 69.22 E-value: 1.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 502 ALKLYPRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSL 581
Cdd:COG5010 15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034581748 582 ASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSP 640
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
651-732 |
3.26e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 68.06 E-value: 3.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 651 RLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEA 729
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
...
gi 1034581748 730 EKM 732
Cdd:COG5010 142 KAA 144
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
580-784 |
4.87e-13 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 70.74 E-value: 4.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 580 SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH-HVAMVNLGRLyrSLGE 658
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 659 NSMaeEWYKRALQVAhkaeilsplgalyyntgryEEALQIYQEAAALQPSQR-ELRLALAQVLAVMG---QT-----KEA 729
Cdd:cd24142 83 EAL--QYYEKGIEIL-------------------EEELQALQAASAEAEEEAeELKRKLSSALCALAeiyMTdlcdePDA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 730 EKMTNHIVSEETGC----LECYRLLSAIYSKQENHDKALDAIDKALQL-KPKDPKVISEL 784
Cdd:cd24142 142 EQRCEELITKALELdptnPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEA 201
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
462-538 |
8.75e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 64.81 E-value: 8.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 462 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIyHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 538
Cdd:COG3063 12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlleLGDYDEALAYLERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
745-848 |
9.09e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 68.40 E-value: 9.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 745 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGG 824
Cdd:COG4785 74 QLYYERGVAYDSLGDYDLAIADFDQALELDPDLA----EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149
|
90 100
....*....|....*....|....
gi 1034581748 825 IQHIKGKYVSARAYYERALQLVPD 848
Cdd:COG4785 150 ALYYLGRYELAIADLEKALELDPN 173
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
473-731 |
1.84e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 70.78 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 473 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPR-------HASALNNLGtltrDTAEAKMYYQRALQLHPQHNRALF 545
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRvtqsyikRASMNLELG----DPDKAEEDFDKALKLNSEDPDIYY 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 546 NLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTGLP 625
Cdd:TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 626 EKAVAHYQQAIKLSPSHHVAMVNLGRLyrsLGENSMAEEW---YKRALQVAHKAEILSP--------LGALYYNTGRYEE 694
Cdd:TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPL---INKALALFQWkqdFIEAENLCEKALIIDPecdiavatMAQLLLQQGDVDE 560
|
250 260 270
....*....|....*....|....*....|....*..
gi 1034581748 695 ALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEK 731
Cdd:TIGR00990 561 ALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
550-643 |
2.99e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 63.27 E-value: 2.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 550 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEiYQTGIKNCPDSSDLHNNYGVFLVDTGLPEKAV 629
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....
gi 1034581748 630 AHYQQAIKLSPSHH 643
Cdd:COG3063 80 AYLERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
662-775 |
8.70e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.21 E-value: 8.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 662 AEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEET 741
Cdd:COG5010 40 DELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP 119
|
90 100 110
....*....|....*....|....*....|....
gi 1034581748 742 GCLECYRLLSAIYSKQENHDKALDAIDKALQLKP 775
Cdd:COG5010 120 DNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
762-868 |
9.78e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.10 E-value: 9.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 762 KALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYER 841
Cdd:COG4235 1 EAIARLRQALAANPNDA----EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER 76
|
90 100
....*....|....*....|....*..
gi 1034581748 842 ALQLVPDSKLLKENLAKLDRLEKRLQE 868
Cdd:COG4235 77 ALALDPDNPEALYLLGLAAFQQGDYAE 103
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
473-868 |
2.04e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 67.70 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 473 PHNAKVHYNYANFLKDQGRNKEAIYHYrTALKLYP--RHASALNNLGTLTRDTAEAKMyyQRALQLHPQHNRALFNLGNL 550
Cdd:TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDL-TASCIIDgfRNEQSAQAVERLLKKFAESKA--KEILETKPENLPSVTFVGNY 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 551 LKSQeKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQ---ERFKEAEEIYQTGIkncpDSSDL-------HNNYGVFLV 620
Cdd:TIGR00990 268 LQSF-RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESkadESYEEAARAFEKAL----DLGKLgekeaiaLNLRGTFKC 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 621 DTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRAL-QVAHKAEILSPLGALYYNTGRYEEALQIY 699
Cdd:TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALkLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 700 QEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPK-DP 778
Cdd:TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKEtKP 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 779 KVIS---------ELFFTKGNQLREQNLLDKafesyrvAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQL--VP 847
Cdd:TIGR00990 503 MYMNvlplinkalALFQWKQDFIEAENLCEK-------ALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELarTE 575
|
410 420
....*....|....*....|.
gi 1034581748 848 DSKLLKENLAKLDRLEKRLQE 868
Cdd:TIGR00990 576 GELVQAISYAEATRTQIQVQE 596
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
792-871 |
2.25e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 2.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 792 LREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 871
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
699-868 |
3.80e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.94 E-value: 3.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 699 YQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLkpkdp 778
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLL----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 779 kvISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAK 858
Cdd:COG3914 77 --LAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154
|
170
....*....|
gi 1034581748 859 LDRLEKRLQE 868
Cdd:COG3914 155 ALRRLGRLEE 164
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
489-817 |
5.30e-11 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 66.65 E-value: 5.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 489 QGRNKEAIYHYRTALKLYPRHASALNNLGTLT---RDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQ--EKKEEAITL 563
Cdd:PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAmarKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQspEKALAFIAS 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 564 LKDSIKygPEFADAYSSL--------ASLLAEQERFKEAEEIYQTGIKNCPDS--------SDLHNN------------- 614
Cdd:PRK11447 444 LSASQR--RSIDDIERSLqndrlaqqAEALENQGKWAQAAELQRQRLALDPGSvwltyrlaQDLRQAgqrsqadalmrrl 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 615 -------------YGVFLVDTGLPEKAVAHYQQ-------------AIKLSPSHHVAMVNlgRLyRSLGENSMAEEWYKR 668
Cdd:PRK11447 522 aqqkpndpeqvyaYGLYLSGSDRDRAALAHLNTlpraqwnsniqelAQRLQSDQVLETAN--RL-RDSGKEAEAEALLRQ 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 669 alQVAhKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYR 748
Cdd:PRK11447 599 --QPP-STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034581748 749 LLSAIYSKQENHDKALDAIDK-ALQLKPKDPKVISELFFTKGNQLREQNLL-DKAFESYR---VAVQLNPDQAQ 817
Cdd:PRK11447 676 RVALAWAALGDTAAAQRTFNRlIPQAKSQPPSMESALVLRDAARFEAQTGQpQQALETYKdamVASGITPTRPQ 749
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
462-538 |
6.75e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.51 E-value: 6.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 462 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHP 538
Cdd:COG5010 74 LALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALllsLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
685-776 |
1.17e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.03 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 685 LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMtNHIVSEETGCLECYRLLSAIYSKQENHDKAL 764
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1034581748 765 DAIDKALQLKPK 776
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
564-844 |
1.47e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.85 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 564 LKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNcPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPShh 643
Cdd:COG4785 29 LLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPD-- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 644 vamvnlgrlyrslgensMAEEWYKRalqvahkaeilsplGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVM 723
Cdd:COG4785 106 -----------------LAEAYNNR--------------GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 724 GQTKEAEkmtnhivseetgclecyrllsaiyskqenhdkalDAIDKALQLKPKDPKVISELFFTKGnqlreqnlldkafe 803
Cdd:COG4785 155 GRYELAI----------------------------------ADLEKALELDPNDPERALWLYLAER-------------- 186
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1034581748 804 syrvavQLNPDQAQAWMNM--GGIQHIKGKYVSARAYYERALQ 844
Cdd:COG4785 187 ------KLDPEKALALLLEdwATAYLLQGDTEEARELFKLALA 223
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
473-599 |
3.55e-10 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 61.20 E-value: 3.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 473 PHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRAL--QLHPQHNRALFNL 547
Cdd:TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFlcqQGKYEQAMQQFEQAIedPLYPQPARSLENA 141
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1034581748 548 GNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQ 599
Cdd:TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
521-609 |
5.78e-10 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 57.31 E-value: 5.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 521 RDTAEAKMYYQRALQLHPQHN---RALFNLGNLLKSQEKKEEAITLLKDSIKYGPE---FADAYSSLASLLAEQERFKEA 594
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKA 86
|
90
....*....|....*
gi 1034581748 595 EEIYQTGIKNCPDSS 609
Cdd:COG1729 87 RATLEELIKKYPDSE 101
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
489-732 |
5.90e-10 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 61.46 E-value: 5.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 489 QGRNKEAIYHYRTALKLYPRHASAlnnlgtltRDTAEAKMYYQ------------RALQLHPQHNRALFNLGNLLKSQEK 556
Cdd:COG3071 63 LGDYERRDEYLAQALELAPEAELA--------VLLTRAELLLDqgqaeqalatleALRAGAPRHPQVLRLLLQAYRQLGD 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 557 KEEAITLLKDSIKYGPEFADAYSSLAsLLAEQERFKEA---EEIYQTGIKNCPDS----SDLHNNYGVFLVDTGLPEKAV 629
Cdd:COG3071 135 WEELLELLPALRKHKALSAEEAQALE-RRAYLGLLRQAardAEALKALWKALPRAerrdPELAAAYARALIALGDHDEAE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 630 AHYQQAIKLSPSHHvamvnLGRLYRSLGENSmAEEWYKRALQVAHK----AEILSPLGALYYNTGRYEEALQIYQEAAAL 705
Cdd:COG3071 214 RLLREALKRQWDPR-----LVRLYGRLQGGD-PAKQLKRAEKWLKKhpndPDLLLALGRLCLRNQLWGKAREYLEAALAL 287
|
250 260
....*....|....*....|....*..
gi 1034581748 706 QPSqRELRLALAQVLAVMGQTKEAEKM 732
Cdd:COG3071 288 RPS-AEAYAELARLLEQLGDPEEAAEH 313
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
482-848 |
6.05e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 62.69 E-value: 6.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 482 YANFLKDQG----RNKE---AIYHYRTALKL------YPRHASALNNLGTLTRDTAEAKmyyqRALQLHPQHNRALFNLG 548
Cdd:TIGR00990 126 YAAKLKEKGnkayRNKDfnkAIKLYSKAIECkpdpvyYSNRAACHNALGDWEKVVEDTT----AALELDPDYSKALNRRA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 549 NLLKSQEKKEEAITLLKDSIKYGpEFADAYSS--LASLLAEQERFKeAEEIYQTGIKNCPDSSDLHNNYGVFLvdtglPE 626
Cdd:TIGR00990 202 NAYDGLGKYADALLDLTASCIID-GFRNEQSAqaVERLLKKFAESK-AKEILETKPENLPSVTFVGNYLQSFR-----PK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 627 KAVAHYQQAIKLSPSHHVAMVNLGRlyRSLgeNSMAEEWYKRALQVahkaeilsplgalyyntgrYEEALQiyqeaaalq 706
Cdd:TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGL--KSP--ESKADESYEEAARA-------------------FEKALD--------- 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 707 psqrelrlalaqvlavMGQTKEAEKmtnhIVSEETGCLECYRllsaiyskqENHDKALDAIDKALQLKPKdpkvISELFF 786
Cdd:TIGR00990 323 ----------------LGKLGEKEA----IALNLRGTFKCLK---------GKHLEALADLSKSIELDPR----VTQSYI 369
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034581748 787 TKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 848
Cdd:TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
792-871 |
9.48e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.33 E-value: 9.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 792 LREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYyERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 871
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
488-584 |
1.33e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 56.54 E-value: 1.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 488 DQGRNKEAIYHYRTALKLYPRH---ASALNNLGTL---TRDTAEAKMYYQRALQLHPQHNR---ALFNLGNLLKSQEKKE 558
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAyyaLGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYD 84
|
90 100
....*....|....*....|....*....
gi 1034581748 559 EAITLLKDSIKYGP---EFADAYSSLASL 584
Cdd:COG1729 85 KARATLEELIKKYPdseAAKEARARLARL 113
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
756-862 |
1.47e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 56.15 E-value: 1.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 756 KQENHDKALDAIDKALQLKPKDPKVISELFFtKGNQLREQNLLDKAFESYRVAVQLNPD---QAQAWMNMGGIQHIKGKY 832
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDY 83
|
90 100 110
....*....|....*....|....*....|
gi 1034581748 833 VSARAYYERALQLVPDSKLLKENLAKLDRL 862
Cdd:COG1729 84 DKARATLEELIKKYPDSEAAKEARARLARL 113
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
525-773 |
5.08e-09 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 58.79 E-value: 5.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 525 EAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPE-FADAYSSLASLLAEqerfKEAEEIYQTGIK 603
Cdd:cd24142 18 LALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGG----EEALQYYEKGIE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 604 NCpdssdlhnnygvflvdtglpEKAVAHYQQAIKLSPSHHVAMVN-LGRLYRSLGENSMA------------EEWYKRAL 670
Cdd:cd24142 94 IL--------------------EEELQALQAASAEAEEEAEELKRkLSSALCALAEIYMTdlcdepdaeqrcEELITKAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 671 QVAHK-AEILSPLGALYYNTGRYEEALQIYQEAAAL---------------------QPSqRELRLALAQVLAVMGQTKE 728
Cdd:cd24142 154 ELDPTnPEALQTLASLRISQQRPDEAKEALRRSLELwkdlkeedeeeaeedeaeeedVPS-YEFRISLAKLLIELEMYEE 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1034581748 729 AEKMTNHIVSEETGCLE-------CYRLLS--AIYSKQENHDKALDAIDKALQL 773
Cdd:cd24142 233 ALEVLEQLLDEDDEDVEvwyllgwAYYLLGekEQEEAAELLRDARELLEKALKL 286
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
757-849 |
6.49e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.23 E-value: 6.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 757 QENHDKALDAIDKALQLKPKDPKVIsELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSAR 836
Cdd:COG4785 49 AAAALAAAALAAERIDRALALPDLA-QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAAL 127
|
90
....*....|...
gi 1034581748 837 AYYERALQLVPDS 849
Cdd:COG4785 128 EDFDRALELDPDY 140
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
690-753 |
6.88e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 52.97 E-value: 6.88e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034581748 690 GRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAI 753
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
800-871 |
7.52e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 7.52e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034581748 800 KAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVRE 871
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE 72
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
522-773 |
1.59e-08 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 57.32 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 522 DTAEAKMYYQRALQLHP--QHNR---ALFNLG-------NLLKSQEKKEEAITLLKDsIKYGPEFADAYSSLASLLAEQE 589
Cdd:pfam17874 16 DAERALELAEQALALLPedDLLArglATFVLGeaylclgDLDAALQAMREAEALARR-ADSPHVTLWALLQQGEILRAQG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 590 RFKEAEEIYQTGIKNCPDSS--------DLHNNYGVFLVDTGLPEKAVAHYQQAIKL----SPSHHV-AMVNLGRLYRSL 656
Cdd:pfam17874 95 RLHQALETYQQALQLARDHGlqhlplhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqwEPDAAVdAYVLLARIALAQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 657 GENSMAEEWYKRALQVAHK--------AEILSPLGALYYNTGRYEEALQIYQEAAALQPS-----QRELRLaLAQVLAVM 723
Cdd:pfam17874 175 GELEEALTLLRRAELLARQsffhvdwlANAERVRVRLWLARGDLRAAVRWLRAAEPPSDAdnhflERELRN-LARVLLAL 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034581748 724 GQTKEAEKMTN--HIVSEETG----CLECYRLLSAIYSKQENHDKALDAIDKALQL 773
Cdd:pfam17874 254 GRFDDALSLLErlQNLAEQLGrvrsLIENLILQALALLALGRPDEALQALLDALSL 309
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
482-705 |
2.11e-08 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 56.09 E-value: 2.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 482 YANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL-------TRDTAEAKMYYQR-ALQLHPqhnRALFNLGNLLKS 553
Cdd:COG0790 35 AAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMyaegrgvPKDYEKALEWFEKaAEQGDA---EAQYNLGLMYEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 554 ----QEKKEEAITLLKDSIKYGpeFADAYSSLASLlaeqerfkeaeeiYQTGIKNCPDssdlhnnygvflvdtglPEKAV 629
Cdd:COG0790 112 glgvPQDYAKALEWYEKAAEQG--DADAQYNLGLL-------------YLNGEGVPKD-----------------PAKAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 630 AHYQQAIKLSpsHHVAMVNLGRLYRSlGE-----NSMAEEWYKRALQVAHKAEILSpLGALYYN----TGRYEEALQIYQ 700
Cdd:COG0790 160 EWYRKAAEQG--DADAQYNLGVLYEN-GRgvpkdPAKALEWYRKAAEQGDADAQYN-LGRLYLNgegvEKDLEKALRWLR 235
|
....*
gi 1034581748 701 EAAAL 705
Cdd:COG0790 236 KAAEQ 240
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
645-708 |
3.33e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 51.23 E-value: 3.33e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034581748 645 AMVNLGRLYRSLGENSMAEEWYKRALQVAHK---------AEILSPLGALYYNTGRYEEALQIYQEAAALQPS 708
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdhpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
785-873 |
3.87e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.51 E-value: 3.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 785 FFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAK------ 858
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQdylkag 90
|
90
....*....|....*.
gi 1034581748 859 -LDRLEKRLQEVREKD 873
Cdd:COG2956 91 lLDRAEELLEKLLELD 106
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
619-848 |
3.90e-08 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 56.07 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 619 LVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGEnsmaeewYKRALQVA---HKAEILSPLGALYYNTGRYEEA 695
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD-------WEELLELLpalRKHKALSAEEAQALERRAYLGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 696 L-QIYQEAAALQ-------PSQR---ELRLALAQVLAVMGQTKEAEKMTNHIVSEE--TGCLECYRLLsaiysKQENHDK 762
Cdd:COG3071 168 LrQAARDAEALKalwkalpRAERrdpELAAAYARALIALGDHDEAERLLREALKRQwdPRLVRLYGRL-----QGGDPAK 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 763 ALDAIDKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYRVAVQLNPDqAQAWMNMGGIQHIKGKYVSARAYYERA 842
Cdd:COG3071 243 QLKRAEKWLKKHPNDP----DLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKA 317
|
....*.
gi 1034581748 843 LQLVPD 848
Cdd:COG3071 318 LALALG 323
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
585-671 |
3.99e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.30 E-value: 3.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 585 LAEQERFKEAEEIYQTGIKNCPDSS---DLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHV---AMVNLGRLYRSLGE 658
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|...
gi 1034581748 659 NSMAEEWYKRALQ 671
Cdd:COG1729 83 YDKARATLEELIK 95
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
619-718 |
7.21e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.53 E-value: 7.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 619 LVDTGLPEKAVAHYQQAIKLSPSHHV---AMVNLGRLYRSLGENSMAEEWYKRALQvAHKAEILSP-----LGALYYNTG 690
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLK-RYPDSPKAPdallkLGLSYLELG 81
|
90 100
....*....|....*....|....*...
gi 1034581748 691 RYEEALQIYQEAAALQPSQRELRLALAQ 718
Cdd:COG1729 82 DYDKARATLEELIKKYPDSEAAKEARAR 109
|
|
| pgaA |
PRK10049 |
outer membrane protein PgaA; Provisional |
686-797 |
1.61e-07 |
|
outer membrane protein PgaA; Provisional
Pssm-ID: 236644 [Multi-domain] Cd Length: 765 Bit Score: 55.11 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 686 YYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLEcYRLLSAIYSKQENHDKALD 765
Cdd:PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137
|
90 100 110
....*....|....*....|....*....|...
gi 1034581748 766 AIDKALQLKPKDPKVISELFFT-KGNQLREQNL 797
Cdd:PRK10049 138 AMTQALPRAPQTQQYPTEYVQAlRNNRLSAPAL 170
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
508-675 |
2.51e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 53.38 E-value: 2.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 508 RHASALNNLGTLTRDTAEAKMYYQ---RALQLHPqhnRALFNLGNLLKSQEKKEEAITLLKDSIKYG--PEFADAYSSLA 582
Cdd:COG3071 160 ERRAYLGLLRQAARDAEALKALWKalpRAERRDP---ELAAAYARALIALGDHDEAERLLREALKRQwdPRLVRLYGRLQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 583 SLLAEqERFKEAEEIyqtgIKNCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVnLGRLYRSLGENSMA 662
Cdd:COG3071 237 GGDPA-KQLKRAEKW----LKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAE-LARLLEQLGDPEEA 310
|
170
....*....|...
gi 1034581748 663 EEWYKRALQVAHK 675
Cdd:COG3071 311 AEHYRKALALALG 323
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
474-607 |
3.37e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.99 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 474 HNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH--ASALNNLGTLTRDTAEAKMyyQRALQLHPQHNRALFNLGNLL 551
Cdd:COG3071 191 RDPELAAAYARALIALGDHDEAERLLREALKRQWDPrlVRLYGRLQGGDPAKQLKRA--EKWLKKHPNDPDLLLALGRLC 268
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034581748 552 KSQEKKEEAITLLKDSIKYGPEfADAYSSLASLLAEQERFKEAEEIYQTGIKNCPD 607
Cdd:COG3071 269 LRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
686-824 |
3.75e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.83 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 686 YY-------NTGRYEEALQIYQEAAALQ--PSQRelrlalAQVLAVMGqtkeaekmtnhivseetgclecyrllsAIYSK 756
Cdd:PRK02603 38 YYrdgmsaqADGEYAEALENYEEALKLEedPNDR------SYILYNMG---------------------------IIYAS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 757 QENHDKALDAIDKALQLKPKDP---KVISELFFTKGNQLREQ-------NLLDKAFESYRVAVQLNPD---QAQAWMNMG 823
Cdd:PRK02603 85 NGEHDKALEYYHQALELNPKQPsalNNIAVIYHKRGEKAEEAgdqdeaeALFDKAAEYWKQAIRLAPNnyiEAQNWLKTT 164
|
.
gi 1034581748 824 G 824
Cdd:PRK02603 165 G 165
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
622-773 |
7.55e-07 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 51.93 E-value: 7.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 622 TGLPEKAVAHYQQAIKLSPS--HHVAMV---NLGRLYRSLGENSMAEEWYKRALQVAHKAEI-------LSPLGALYYNT 689
Cdd:pfam17874 14 KGDAERALELAEQALALLPEddLLARGLatfVLGEAYLCLGDLDAALQAMREAEALARRADSphvtlwaLLQQGEILRAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 690 GRYEEALQIYQEAAALQPSQRELRL--------ALAQVLAVMGQTKEAE-----------KMTNHIVseetgcLECYRLL 750
Cdd:pfam17874 94 GRLHQALETYQQALQLARDHGLQHLplhgfllvGLADLLYEWNDLEEAEqhaqqgiqlgrQWEPDAA------VDAYVLL 167
|
170 180
....*....|....*....|...
gi 1034581748 751 SAIYSKQENHDKALDAIDKALQL 773
Cdd:pfam17874 168 ARIALAQGELEEALTLLRRAELL 190
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
607-673 |
7.85e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.38 E-value: 7.85e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034581748 607 DSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLS-----PSHH---VAMVNLGRLYRSLGENSMAEEWYKRALQVA 673
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHPltaTTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
460-607 |
8.54e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.68 E-value: 8.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 460 SRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKL-------YPRHASALNNLGTLTR---DTAEAKMY 529
Cdd:TIGR00990 451 SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELeketkpmYMNVLPLINKALALFQwkqDFIEAENL 530
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034581748 530 YQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSikygPEFADAYSSLASLLAeqerFKEAEEIYQTGIKNCPD 607
Cdd:TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA----AELARTEGELVQAIS----YAEATRTQIQVQEDYPV 600
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
573-701 |
1.50e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 50.27 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 573 EFADAYSS---LASLLAEQERFKEAEEIYQTGIK-NCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSH--HVAM 646
Cdd:COG4700 84 EFADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAH 163
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1034581748 647 VNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQE 701
Cdd:COG4700 164 LLYARALEALGDLEAAEAELEALARRYSGPEARYRYAKFLARQGRTAEAKELLEE 218
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
470-814 |
1.56e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 52.01 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 470 QTLPHNAKVHYNYANFLKDQGRNKEAIyhyrTALKLYPRHASAlnnlgtltRDTAeAKMYYQ--RALQLHPQHNRAL--- 544
Cdd:PRK11447 175 ADYPGNTGLRNTLALLLFSSGRRDEGF----AVLEQMAKSPAG--------RDAA-AQLWYGqiKDMPVSDASVAALqky 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 545 ---FNLGNLL-KSQEKKEEAITLLKDsikygPEFADAYSSLAslLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLV 620
Cdd:PRK11447 242 lqvFSDGDSVaAARSQLAEQQKQLAD-----PAFRARAQGLA--AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 621 DTGLPEKAVAHYQQAIKLSPSHHvamvNLGRlYRSLGENSMaeewYKRALQVAHKAeilspLGAlyyntGRYEEALQIYQ 700
Cdd:PRK11447 315 QQGDRARAVAQFEKALALDPHSS----NRDK-WESLLKVNR----YWLLIQQGDAA-----LKA-----NNLAQAERLYQ 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 701 EAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYsKQENHDKALDAIDkalQLKPKDPKV 780
Cdd:PRK11447 376 QARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALAFIA---SLSASQRRS 451
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1034581748 781 ISEL--------FFTKGNQLREQNLLDKAFESYRVAVQLNPD 814
Cdd:PRK11447 452 IDDIerslqndrLAQQAEALENQGKWAQAAELQRQRLALDPG 493
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
476-539 |
1.80e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 46.23 E-value: 1.80e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034581748 476 AKVHYNYANFLKDQGRNKEAIYHYRTALKLY--------PRHASALNNLGTLTR---DTAEAKMYYQRALQLHPQ 539
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLelgRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
542-642 |
3.47e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 3.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 542 RALFNLGNLlksqekkEEAITLLKDSIKYGPE---FADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS---DLHNNY 615
Cdd:COG1729 1 KALLKAGDY-------DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKL 73
|
90 100
....*....|....*....|....*..
gi 1034581748 616 GVFLVDTGLPEKAVAHYQQAIKLSPSH 642
Cdd:COG1729 74 GLSYLELGDYDKARATLEELIKKYPDS 100
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
676-776 |
3.55e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.46 E-value: 3.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 676 AEILSPLGALYYNTGRYEEALQIYQEAAALQpsqrelrlalaqvlavmgqtkEAEKMTNHIvseetGCLECYRLLSAIYS 755
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIA---------------------RRLLGPDHP-----LTATTLLNLGRLYL 56
|
90 100
....*....|....*....|.
gi 1034581748 756 KQENHDKALDAIDKALQLKPK 776
Cdd:pfam13424 57 ELGRYEEALELLERALALAEK 77
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
483-597 |
4.26e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 49.55 E-value: 4.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 483 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTL---TRDTAEAKMYYQRALQLHPQHN-RALFNLG---------- 548
Cdd:cd24142 7 AEELLDQGNFELALKFLQRALELEPNNVEALELLGEIlleLGDVEEAREVLLRAIELDPDGGyEKYLYLGqlsggeealq 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 549 ----------NLLKSQEKK---------------------------------EEA----ITLLKDSIKYGPEFADAYSSL 581
Cdd:cd24142 87 yyekgieileEELQALQAAsaeaeeeaeelkrklssalcalaeiymtdlcdePDAeqrcEELITKALELDPTNPEALQTL 166
|
170
....*....|....*.
gi 1034581748 582 ASLLAEQERFKEAEEI 597
Cdd:cd24142 167 ASLRISQQRPDEAKEA 182
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
462-543 |
7.46e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.75 E-value: 7.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 462 ESLFRSGVQTLPHN---AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH---ASALNNLGTL---TRDTAEAKMYYQR 532
Cdd:COG1729 13 IAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSyleLGDYDKARATLEE 92
|
90
....*....|.
gi 1034581748 533 ALQLHPQHNRA 543
Cdd:COG1729 93 LIKKYPDSEAA 103
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
591-681 |
1.00e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 46.59 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 591 FKEAEEIYQTGIK---NCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSM------ 661
Cdd:PRK02603 51 YAEALENYEEALKleeDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEeagdqd 130
|
90 100
....*....|....*....|.
gi 1034581748 662 -AEEWYKRALQVAHKAEILSP 681
Cdd:PRK02603 131 eAEALFDKAAEYWKQAIRLAP 151
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
652-732 |
1.34e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.98 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 652 LYRSlGENSMAEEWYKRALQV----AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQR---ELRLALAQVLAVMG 724
Cdd:COG1729 3 LLKA-GDYDEAIAAFKAFLKRypnsPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELG 81
|
....*...
gi 1034581748 725 QTKEAEKM 732
Cdd:COG1729 82 DYDKARAT 89
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
755-858 |
1.40e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 46.20 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 755 SKQENHD--KALDAIDKALQLKpKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGK- 831
Cdd:PRK02603 44 SAQADGEyaEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEk 122
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1034581748 832 -------------YVSARAYYERALQLVPDSKLLKENLAK 858
Cdd:PRK02603 123 aeeagdqdeaealFDKAAEYWKQAIRLAPNNYIEAQNWLK 162
|
|
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
522-718 |
1.87e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 47.96 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 522 DTAEAKMYYQRALQLHPQH---NRALFNLgnllKSQEKK-EEAITLLKDSIKYGPEFADAYSSL-ASLLAEQERfkEAEE 596
Cdd:COG3898 167 DTEAALALAEEALALAPKLpwaQDALLEL----QAAAGDwDGALATLDAALKAGLLDKDVARRRrAVLLTARAR--ELEE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 597 iyqtgikncpdssdlhnnygvflvdtGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENsmaeewyKRALQVAHKA 676
Cdd:COG3898 241 --------------------------GDPDEARELAIEALKLAPDLVPAAVLAARLLIAQGKL-------RKAAKVLEKA 287
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1034581748 677 EILSP---LGALYYNTGRYEEALQIYQEA---AALQPSQRELRLALAQ 718
Cdd:COG3898 288 WRAQPhpdLAAAYAELRPGDSALDRLKRAetlAALNPDHPESRLALAE 335
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
625-732 |
2.17e-05 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 47.88 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 625 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ--VAHKAEILSPLGALYYNTGRYEEALQIYQEA 702
Cdd:PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEqdPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275
|
90 100 110
....*....|....*....|....*....|
gi 1034581748 703 AALQPSQrELRLALAQVLAVMGQTKEAEKM 732
Cdd:PRK11788 276 LEEYPGA-DLLLALAQLLEEQEGPEAAQAL 304
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
606-861 |
2.71e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 48.16 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 606 PDSSDLHNNYGVFLVDTGLPEKAVAHYQQaiklspshhVAMVNLGRlyrslgeNSMAEEWYKralQVahKAEILSPLG-- 683
Cdd:PRK11447 178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQ---------MAKSPAGR-------DAAAQLWYG---QI--KDMPVSDASva 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 684 ALYYNTGRYEEALQIYQEAAALQPSQREL-------RL-ALAQVLAvmGQTKEAEKMTNHIVSEETGCLECYRLLSAIYS 755
Cdd:PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLadpafraRAqGLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 756 KQENHDKALDAIDKALQLKPKDPKvISE-----------LFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGG 824
Cdd:PRK11447 315 QQGDRARAVAQFEKALALDPHSSN-RDKwesllkvnrywLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGD 393
|
250 260 270
....*....|....*....|....*....|....*..
gi 1034581748 825 IQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDR 861
Cdd:PRK11447 394 VAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
625-863 |
4.80e-05 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 46.73 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 625 PEKAVAHYQQAIKLSPS---HHVAmvnLGRLYRSLGEnsmaeewYKRALQVaHKAEILSPlgalyyntgryeealqiyqe 701
Cdd:PRK11788 51 PDKAIDLFIEMLKVDPEtveLHLA---LGNLFRRRGE-------VDRAIRI-HQNLLSRP-------------------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 702 aaALQPSQREL-RLALAQ-VLAVmGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKD-P 778
Cdd:PRK11788 100 --DLTREQRLLaLQELGQdYLKA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSlR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 779 KVIS----ELfftkGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYERALQ----LVPDS- 849
Cdd:PRK11788 177 VEIAhfycEL----AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEqdpeYLSEVl 252
|
250
....*....|....
gi 1034581748 850 KLLKENLAKLDRLE 863
Cdd:PRK11788 253 PKLMECYQALGDEA 266
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
510-569 |
5.19e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 5.19e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034581748 510 ASALNNLGTLTR---DTAEAKMYYQRALQL--------HPQHNRALFNLGNLLKSQEKKEEAITLLKDSIK 569
Cdd:pfam13424 3 ATALNNLAAVLRrlgRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
479-600 |
5.69e-05 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 45.64 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 479 HYNYANFLKDQGRNKEAIYHYRTALK-LYPRHASALNNLG---TLTRDTAEAKMYYQRALQLHPQHNR--ALFNLGNLLK 552
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAqalFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALE 171
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1034581748 553 SQEKKEEAITLLKDSIKYGPeFADAYSSLASLLAEQERFKEAEEIYQT 600
Cdd:COG4700 172 ALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEE 218
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
757-872 |
6.68e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 45.70 E-value: 6.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 757 QENHDKALDAIDKALQLKPKDPKVIsELFftkGNQLREQNLLDKAFESYRVAVQLNPDQ-AQAWMNMGgiQHIKGKyvSA 835
Cdd:cd24142 13 QGNFELALKFLQRALELEPNNVEAL-ELL---GEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLG--QLSGGE--EA 84
|
90 100 110
....*....|....*....|....*....|....*..
gi 1034581748 836 RAYYERALQLVpdSKLLKENLAKLDRLEKRLQEVREK 872
Cdd:cd24142 85 LQYYEKGIEIL--EEELQALQAASAEAEEEAEELKRK 119
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
545-609 |
8.42e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 41.55 E-value: 8.42e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034581748 545 FNLGNLLKSQEKKEEAITLLKDSIKYG---PEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS 609
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
522-584 |
8.84e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 41.03 E-value: 8.84e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034581748 522 DTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASL 584
Cdd:pfam14559 3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
647-732 |
1.06e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 44.87 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 647 VNLGRLYRSLGENSMAEEWYKRALQ--VAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQR--ELRLALAQVLAV 722
Cdd:COG4700 93 VRLADALLELGRYDEAIELYEEALTgiFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKssDAHLLYARALEA 172
|
90
....*....|
gi 1034581748 723 MGQTKEAEKM 732
Cdd:COG4700 173 LGDLEAAEAE 182
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
683-724 |
2.48e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 2.48e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1034581748 683 GALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMG 724
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
789-830 |
2.55e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 2.55e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1034581748 789 GNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKG 830
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
816-848 |
2.87e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 2.87e-04
10 20 30
....*....|....*....|....*....|...
gi 1034581748 816 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 848
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
662-875 |
3.39e-04 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 43.33 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 662 AEEWYKRALQvahkaeilsplgalYYNTGRYEEALQIYQEAAALQPSqrelrlalaqvlavmgqTKEAEKMtnhivseet 741
Cdd:COG4105 32 AEELYEEAKE--------------ALEKGDYEKAIKLFEELEPRYPG-----------------SPYAEQA--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 742 gclecyrLLSAIYS--KQENHDKALDAIDKALQLKPKDPKViSELFFTKG----NQL----REQNLLDKAFESYRVAVQL 811
Cdd:COG4105 72 -------QLMLAYAyyKQGDYEEAIAAADRFIKLYPNSPNA-DYAYYLRGlsyyEQSpdsdRDQTSTRKAIEAFQELINR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 812 NPD-----QAQAWMNMggIQ--------HI------KGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVREK 872
Cdd:COG4105 144 YPDseyaeDAKKRIDE--LRdklarkelEVaryylkRGAYVAAINRFQNVLEDYPDTPAVEEALYLLVEAYYALGRYDEA 221
|
...
gi 1034581748 873 DQT 875
Cdd:COG4105 222 QDA 224
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
476-508 |
3.85e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.27 E-value: 3.85e-04
10 20 30
....*....|....*....|....*....|...
gi 1034581748 476 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPR 508
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
558-613 |
3.90e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 39.49 E-value: 3.90e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034581748 558 EEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHN 613
Cdd:pfam14559 5 AEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
682-719 |
3.97e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 38.94 E-value: 3.97e-04
10 20 30
....*....|....*....|....*....|....*...
gi 1034581748 682 LGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQV 719
Cdd:pfam13428 7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
483-517 |
4.47e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.61 E-value: 4.47e-04
10 20 30
....*....|....*....|....*....|....*
gi 1034581748 483 ANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLG 517
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLG 35
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
494-665 |
5.36e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 43.75 E-value: 5.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 494 EAIYHYRTALkLYPRHASALNNLGTLTRDTAEAKmYYQRALQL----------------HPQHNRALFNLGNLLKSQEKK 557
Cdd:NF040586 544 REVLRRRRRV-LGPDHPRTLLSANNLARDLRELG-RYAEALDLleealeryrevlggpdHPDTLRAAKSLAVALRRAGRL 621
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 558 EEAITLLKDSI-----KYGPEFADAYS---SLASLLAEQERFKEAEEIYQTGIKNCPDSSDLH--------NNYGVFLVD 621
Cdd:NF040586 622 EEALELAEDTYeryrrRFGPDHPDTLAaalSLANDLRALGDADEARELAREVLDRYRRVLGEDhpftlacrNNLAVLLRA 701
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1034581748 622 TGLPEKAVAHYQQAI-----KLSPSHH---VAMVNLGRLYRSLGENSMAEEW 665
Cdd:NF040586 702 LGDPEEARELAEAALeglreRLGPDHPytlAAAVNLANDLAALGDLDAALGE 753
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
542-641 |
6.69e-04 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 40.34 E-value: 6.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 542 RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEF---ADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSS---DLHNNY 615
Cdd:TIGR02795 1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKStyaPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkapDALLKL 80
|
90 100
....*....|....*....|....*.
gi 1034581748 616 GVFLVDTGLPEKAVAHYQQAIKLSPS 641
Cdd:TIGR02795 81 GMSLQELGDKEKAKATLQQVIKRYPG 106
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
619-673 |
8.99e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 8.99e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1034581748 619 LVDTGLPEKAVAHYQQAIKL---SPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVA 673
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
682-707 |
9.61e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.50 E-value: 9.61e-04
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
547-778 |
1.15e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 41.96 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 547 LGNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLA-----EQERFKEAEEIYQTGIKNCPDSSDLhnnygVFLVD 621
Cdd:pfam13429 14 LATLLYGQGDPRKALAALKEGAQTAPASDTEFWRTLADLAwalqqDDDARRAYRQLLASGKARADDYERL-----ILLLY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 622 TGLPEKAVA-------------HYQQAIKLSPSHHvAMVNLGRLYRSLGENSMAEE----WYKRAlqvahkaeilsplgA 684
Cdd:pfam13429 89 DARPKDAARlselgwrrfrsprHLYSALYLYERAG-DYDRLARLLASLEELPAAEQspafWLARA--------------E 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 685 LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKAL 764
Cdd:pfam13429 154 YYRQTGEPDAALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLGRPRKAL 233
|
250
....*....|....
gi 1034581748 765 DAIDKALQLKPKDP 778
Cdd:pfam13429 234 PYLRKQAASNRNDP 247
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
816-848 |
1.16e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 1.16e-03
10 20 30
....*....|....*....|....*....|...
gi 1034581748 816 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 848
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
786-849 |
1.22e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 1.22e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034581748 786 FTKGNQLREQNLLDKAFESYRVAVQLN---PDQAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDS 849
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
623-729 |
1.22e-03 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 39.98 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 623 GLPEKAVAHYQQAIklspshhvamvnlgRLYR--SLGENSmAEEW---YKRALQvAHKAEILSPLGALYYNTGRYEEALQ 697
Cdd:smart01043 19 ADPEAALALLEAAL--------------ALYRgpLLADVP-DEDWaeaERERLR-ELRLEALEALAEALLALGRHEEALA 82
|
90 100 110
....*....|....*....|....*....|..
gi 1034581748 698 IYQEAAALQPSQRELRLALAQVLAVMGQTKEA 729
Cdd:smart01043 83 LLERLLALDPLRERLHRLLMRALYRAGRRAEA 114
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
462-512 |
1.33e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 1.33e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1034581748 462 ESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASA 512
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
791-871 |
1.35e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 791 QLREQNLLDKAFESYRVAVQLNPD---QAQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQ 867
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
|
....
gi 1034581748 868 EVRE 871
Cdd:COG1729 82 DYDK 85
|
|
| FAT |
pfam02259 |
FAT domain; The FAT domain is named after FRAP, ATM and TRRAP. |
453-642 |
1.43e-03 |
|
FAT domain; The FAT domain is named after FRAP, ATM and TRRAP.
Pssm-ID: 396714 [Multi-domain] Cd Length: 342 Bit Score: 41.95 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 453 KQNEIWLSRESLFR-SGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRHASALNNLgtLTRDTAEAKMYYQ 531
Cdd:pfam02259 161 KSGRFSLAEKALLKlLGEDPEEWLPEVVYAYAKYLWPTGEQQEALLKLREFLSCYLQKNGELLSG--LEVINPTNLEEFT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 532 RALqlhpqhNRALFNLGNLL------KSQEKKEEAITLLKDSIKYGPEFADAYSSLAslLAEQERFKEAEEiyqtgIKNC 605
Cdd:pfam02259 239 ELL------ARCYLLKGKWQaalgqnWAEEKSEEILQAYLLATQFDPSWYKAWHTWA--LFNFEVLRKEEQ-----GKEE 305
|
170 180 190
....*....|....*....|....*....|....*..
gi 1034581748 606 PDSSDLhnnygvflvdTGLPEKAVAHYQQAIKLSPSH 642
Cdd:pfam02259 306 EGPEDL----------SRYVVPAVEGYLRSLSLSSEN 332
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
476-509 |
1.51e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.51e-03
10 20 30
....*....|....*....|....*....|....
gi 1034581748 476 AKVHYNYANFLKDQGRNKEAIYHYRTALKLYPRH 509
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
745-777 |
1.69e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.69e-03
10 20 30
....*....|....*....|....*....|...
gi 1034581748 745 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 777
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
524-721 |
1.85e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 42.15 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 524 AEAKMYYQRALQLHPQHN-------------RALFNLGNLLKSQEKKEEAITLL----KDSIKYG--PEFADAYSSLASL 584
Cdd:COG3899 722 AEALRYLERALELLPPDPeeeyrlalllelaEALYLAGRFEEAEALLERALAARalaaLAALRHGnpPASARAYANLGLL 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 585 LaeQERFKEAEEIYQTGIK------NCPDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGE 658
Cdd:COG3899 802 L--LGDYEEAYEFGELALAlaerlgDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAA 879
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034581748 659 NSMAEEW---YKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLA 721
Cdd:COG3899 880 AAAAAALaaaAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAAL 945
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
631-731 |
1.88e-03 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 41.50 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 631 HYQQAIKLSPSH--HVAMVNLGRLYRSL--GENS----MAEEWYKRAlqvAHKAEILSPLGALYYNTGRYEEAlQIYQEA 702
Cdd:TIGR00540 258 DHDEAEKLIEEAlkKEWDPELLRLYGRLqpGDPSplikRAEKWLKKH---PDDALLLLALGRLCLRQQLWGKA-QSYLEA 333
|
90 100
....*....|....*....|....*....
gi 1034581748 703 AALQPSQRELRLALAQVLAVMGQTKEAEK 731
Cdd:TIGR00540 334 SLSLAPTEEAHLELAQLFEQLGDTEAAAQ 362
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
682-708 |
1.96e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.96e-03
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
745-777 |
2.05e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 2.05e-03
10 20 30
....*....|....*....|....*....|...
gi 1034581748 745 ECYRLLSAIYSKQENHDKALDAIDKALQLKPKD 777
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
753-824 |
2.22e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 39.61 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 753 IYSKQENHDKALDAIDKALQLKPKDPK------VI----SELFFTKGNQLREQNLLDKAFESYRVAVQLNPD---QAQAW 819
Cdd:CHL00033 81 IHTSNGEHTKALEYYFQALERNPFLPQalnnmaVIchyrGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGnyiEAQNW 160
|
....*
gi 1034581748 820 MNMGG 824
Cdd:CHL00033 161 LKITG 165
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
676-708 |
2.26e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 2.26e-03
10 20 30
....*....|....*....|....*....|...
gi 1034581748 676 AEILSPLGALYYNTGRYEEALQIYQEAAALQPS 708
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
816-848 |
2.33e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.35 E-value: 2.33e-03
10 20 30
....*....|....*....|....*....|...
gi 1034581748 816 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPD 848
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
490-721 |
2.67e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.77 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 490 GRNKEAIYHYRTALKLY-------------PRHASALNNLGTLTR-DTAEAKMYYQRALQLHPQHN------RALFNLGN 549
Cdd:COG3899 759 GRFEEAEALLERALAARalaalaalrhgnpPASARAYANLGLLLLgDYEEAYEFGELALALAERLGdrrleaRALFNLGF 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 550 LLKSQEKKEEAITLLKDSIKYGPEFADAYSSLA---SLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGvFLVDTGLPE 626
Cdd:COG3899 839 ILHWLGPLREALELLREALEAGLETGDAALALLalaAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAA-AAAALAAAE 917
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 627 KAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQ 706
Cdd:COG3899 918 LARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAA 997
|
250
....*....|....*
gi 1034581748 707 PSQRELRLALAQVLA 721
Cdd:COG3899 998 LLALLAAAAAAAAAA 1012
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
662-719 |
2.73e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.18 E-value: 2.73e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034581748 662 AEEWYKRALQVA-HKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQV 719
Cdd:pfam14559 7 ALELLEQALAEDpDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
649-868 |
2.86e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.66 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 649 LGRLYRSLGEnsMAEEWYKRALQVAHKAEILSPLGALYY--------NTGRYEEALQIYQEAAALQPSQRELR-LALAQV 719
Cdd:COG3071 17 LAALLEGLLA--LAEGRYARAEKLLSKAAEHSEAPLLAYllaaraaqALGDYERRDEYLAQALELAPEAELAVlLTRAEL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 720 LAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISELfftkgNQLREQNLLD 799
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQAL-----ERRAYLGLLR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 800 KAFESYRV----------AVQLNPD----QAQAWMNMGgiqhikgKYVSARAYYERALQLVPDSKLL--------KENLA 857
Cdd:COG3071 170 QAARDAEAlkalwkalprAERRDPElaaaYARALIALG-------DHDEAERLLREALKRQWDPRLVrlygrlqgGDPAK 242
|
250
....*....|.
gi 1034581748 858 KLDRLEKRLQE 868
Cdd:COG3071 243 QLKRAEKWLKK 253
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
548-588 |
3.57e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.91 E-value: 3.57e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1034581748 548 GNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQ 588
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
645-673 |
3.73e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 35.59 E-value: 3.73e-03
10 20
....*....|....*....|....*....
gi 1034581748 645 AMVNLGRLYRSLGENSMAEEWYKRALQVA 673
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALA 29
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
623-706 |
3.81e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.00 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 623 GLPEKAVAHYQQAiklspshhvamvnlGRLYRSLGENSMAEEWYKRAL-------QVAHKAEILSPLGALYYNTGRYEEA 695
Cdd:COG3899 699 GERDRAARLLLRA--------------ARRALARGAYAEALRYLERALellppdpEEEYRLALLLELAEALYLAGRFEEA 764
|
90
....*....|.
gi 1034581748 696 LQIYQEAAALQ 706
Cdd:COG3899 765 EALLERALAAR 775
|
|
| Mad3_BUB1_I |
pfam08311 |
Mad3/BUB1 homology region 1; Proteins containing this domain are checkpoint proteins involved ... |
553-602 |
3.83e-03 |
|
Mad3/BUB1 homology region 1; Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Pssm-ID: 462420 Cd Length: 123 Bit Score: 38.28 E-value: 3.83e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1034581748 553 SQEKKEEAITLLKDSIkyGPEFADAYSSLASLLAEQERFKEAEEIYQTGI 602
Cdd:pfam08311 76 CDDPRDIFQFLYSNGI--GTKLALFYEEWAELLERQGRFKEADEIYQLGI 123
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
570-730 |
3.84e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 40.03 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 570 YGPEFADAYSSLASLLAEQERFKEAEeiyqtgikncpDSSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNL 649
Cdd:pfam13429 117 YLYERAGDYDRLARLLASLEELPAAE-----------QSPAFWLARAEYYRQTGEPDAALRDYRRALALAPASTELRAAL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 650 GRLYRSLGENsmAEewyKRALQVAHKAEILS------PLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVM 723
Cdd:pfam13429 186 LWFLIDLGRR--AE---LRPALAAWRARAETdadlwgPLAAAYLRLGRPRKALPYLRKQAASNRNDPLWLLAYADALEQA 260
|
....*..
gi 1034581748 724 GQTKEAE 730
Cdd:pfam13429 261 GRADAAW 267
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|
| TPR_11 |
pfam13414 |
TPR repeat; |
650-690 |
4.22e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.91 E-value: 4.22e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1034581748 650 GRLYRSLGENSMAEEWYKRALQVAHK-AEILSPLGALYYNTG 690
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDnPEAYYNLGLAYYKLG 42
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
525-794 |
4.85e-03 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 39.87 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 525 EAKMYYQRALQLHPQHN------RALFNLGNLLKSqEKKEEAITLLKDSIkygpefadaysslaSLLAEQERF------- 591
Cdd:cd15832 50 EAGDAFLKAAECQLKLDskhdaaNAYVEAAKCYKK-VDPQEAVNCLEKAI--------------EIYTEMGRFrqaakhl 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 592 KEAEEIYQTgikncpdssdlhnnygvflvDTGLPEKAVAHYQQAiklspshhvamvnlGRLYRSLGENSMAEEWYKRAlq 671
Cdd:cd15832 115 KEIAELYEN--------------------ELGDLDKAIEAYEQA--------------ADYYEGEGANSLANKCYLKV-- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 672 vahkAEILSPLgalyyntGRYEEALQIYQEAAA-------LQPSQRE-------LRLALAQVLAVmgqTKEAEKMTN--- 734
Cdd:cd15832 159 ----ADLAAQL-------EDYDKAIEIYEQVARsslennlLKYSAKDyflkaglCHLAAGDVVAA---QRALEKYAEldp 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034581748 735 -HIVSEEtgclecYRLLSAIYSKQENHDkaLDAIDKALqlkpKDPKVISELFFTKGNQLRE 794
Cdd:cd15832 225 sFAGSRE------CKLLEDLLEAVEEGD--VEAFTDAV----KEYDSISKLDKWKTTMLLK 273
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| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
645-676 |
6.07e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.17 E-value: 6.07e-03
10 20 30
....*....|....*....|....*....|..
gi 1034581748 645 AMVNLGRLYRSLGENSMAEEWYKRALQVAHKA 676
Cdd:pfam13374 4 SLNNLANALRAQGRYDEAEELLEEALAIRERV 35
|
|
| TPR-S |
pfam20308 |
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ... |
525-649 |
6.85e-03 |
|
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.
Pssm-ID: 466458 [Multi-domain] Cd Length: 105 Bit Score: 36.87 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034581748 525 EAKMYYQRALQLhPQHNRALFNLGNLL-KSQEKKEEAITLLKDSIKYGPEFADAYSSLASllAEQERFKEAEEiyqtgik 603
Cdd:pfam20308 4 AAVELLEALLAL-PEDARAQEQLALALaRLPGDRDEALDVLEDLIERLGEDPETLGLLGR--IYKRLWLESAE------- 73
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1034581748 604 ncpDSSDLhnnygvflvdtglpEKAVAHYQQAIKLSPSHHvAMVNL 649
Cdd:pfam20308 74 ---DREAL--------------DQAIEAYRKAFELDPDDY-PGINA 101
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
745-776 |
7.74e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 7.74e-03
10 20 30
....*....|....*....|....*....|..
gi 1034581748 745 ECYRLLSAIYSKQENHDKALDAIDKALQLKPK 776
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
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