|
Name |
Accession |
Description |
Interval |
E-value |
| CEP63 |
pfam17045 |
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole ... |
81-343 |
3.36e-96 |
|
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole activity.
Pssm-ID: 465338 [Multi-domain] Cd Length: 264 Bit Score: 294.81 E-value: 3.36e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 81 LTSCEAELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYK 160
Cdd:pfam17045 1 LSSCEAELQELMKQIDIMVAHKKSEWEGQTRALETRLDIREEELLSARNTLERKHKEIGLLRQQLEELEKGKQELVAKYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 161 EELLKLQEELSRLKRSYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKAL 240
Cdd:pfam17045 81 QQLQKLQEELSKLKRSYEKLQRKQLKEAREEAKSREEDRSELSRLNGKLEEFRQKSLEWEQQRLQYQQQVASLEAQRKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 241 AEQSEIIQA-----QLANRKQKLEsvelSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKE 315
Cdd:pfam17045 161 AEQSSLIQSaayqvQLEGRKQCLE----ASQSEIQRLRSKLERAQDSLCAQELELERLRMRVSELGDSNRKLLEEQQRLL 236
|
250 260
....*....|....*....|....*...
gi 1039793427 316 EKLRESEKLLEALQEEQKELKASLQSQE 343
Cdd:pfam17045 237 EELRMSQRQLQVLQNELMELKATLQSQD 264
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
122-427 |
8.44e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 8.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 122 RELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLklqeelsRLKRSYEKLQKKQLREFRGNTKSFREDRSE 201
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ-------LLEELNKKIKDLGEEEQLRVKEKIGELEAE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 202 IERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQ---AQLANRKQKLESVELSSQSEIQHLNSKLER 278
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERkrrDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 279 AKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLqsqETFILEAKMQE-KLQT 357
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK---EDKALEIKKQEwKLEQ 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039793427 358 TLKAVGT-QQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQL 427
Cdd:TIGR02169 460 LAADLSKyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
85-389 |
2.94e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 85 EAELQELMKQIDIMVAhKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQemameykeell 164
Cdd:COG1196 238 EAELEELEAELEELEA-ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA----------- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 165 klqEELSRLKRSYEKLQKKQLREfrgntksfREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQS 244
Cdd:COG1196 306 ---RLEERRRELEERLEELEEEL--------AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 245 EIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDticaNELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKL 324
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039793427 325 LEALQEEQKELKASLQSQETfiLEAKMQEKLQTTLKAVGTQQSVERPLEdcQKERKYSSPGQGVL 389
Cdd:COG1196 451 EAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLL--EAEADYEGFLEGVK 511
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
46-577 |
1.45e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 46 KSRSSRTQSCcqnkedlEMEALLEGIQNRGHSGGFLTSCE-AELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDREL 124
Cdd:pfam15921 286 KASSARSQAN-------SIQSQLEIIQEQARNQNSMYMRQlSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 125 KALRSQLDMKHKEVGILHQQIEE-----HEKTKQemameykeellklqeelsrlkRSYEKLQKKQLREF-RGNTKSFRED 198
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKlladlHKREKE---------------------LSLEKEQNKRLWDRdTGNSITIDHL 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 199 RSEIERLTGKIEEFRQ--KSLDWEKQRLIYQQ------------QVSSLEAQRKALAEQSEIIQAQLANRKQKLESvels 264
Cdd:pfam15921 418 RRELDDRNMEVQRLEAllKAMKSECQGQMERQmaaiqgknesleKVSSLTAQLESTKEMLRKVVEELTAKKMTLES---- 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 265 SQSEIQHLNSKLERAKDTICANELEIERLNIRVNdlmgTNMTILQDHRQKEEKLRESEKLLEAL--QEEQKELKASLQSQ 342
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTECEALklQMAEKDKVIEILRQ 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 343 ETFILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELlqaEVTRLEGSLESVSA 422
Cdd:pfam15921 570 QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL---EKVKLVNAGSERLR 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 423 TCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSSSD-- 500
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHam 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 501 -----MEKQ----------LKAEMQKAEEK-------------------------AVEHKEILSQLESLKLENHRLSETV 540
Cdd:pfam15921 727 kvamgMQKQitakrgqidaLQSKIQFLEEAmtnankekhflkeeknklsqelstvATEKNKMAGELEVLRSQERRLKEKV 806
|
570 580 590
....*....|....*....|....*....|....*...
gi 1039793427 541 MKLELGLHEGSLPTSPLGSIATRFLEEE-ELRSHHILE 577
Cdd:pfam15921 807 ANMEVALDKASLQFAECQDIIQRQEQESvRLKLQHTLD 844
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
286-596 |
9.67e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 9.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 286 NELEIERLNI-RVNDLMG---TNMTILQDHRQKEEKLREseklleaLQEEQKELKASLQSQETFILEAKMQEKLQTTLKA 361
Cdd:COG1196 179 RKLEATEENLeRLEDILGeleRQLEPLERQAEKAERYRE-------LKEELKELEAELLLLKLRELEAELEELEAELEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 362 VGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLdfsHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRM 441
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEA---QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 442 EGHNNEYRTEIKKLKEQILQADQTYSSALEgmkmEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKE 521
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEA----ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039793427 522 ILSQLESLKLENHRLSETVMKLELGLHEgslptsplgsiatrfLEEEELRSHHILERLDAHIEELKRESEKTVRQ 596
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAE---------------LEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
122-595 |
1.59e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 122 RELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAmeykEELLKLQEELSRLKRSYEKLQ--KKQLREFRGNTKSFREDR 199
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIE----ELEKELESLEGSKRKLEEKIRelEERIEELKKEIEELEEKV 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 200 SEIERLTGKIEEFRQKSLDWEKqrliYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVElssqsEIQHLNSKLERA 279
Cdd:PRK03918 283 KELKELKEKAEEYIKLSEFYEE----YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-----ELKKKLKELEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 280 KDTICANELEIERLNIRVNDLMGTNMTILQDHRQK-EEKLRESEKLLEALQEEQKELKASLQSQETFILEAKmqEKLQTT 358
Cdd:PRK03918 354 LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKlEKELEELEKAKEEIEEEISKITARIGELKKEIKELK--KAIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 359 LKAVGTQQSVERPLEDCQKE---RKYSSPgqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLS------- 428
Cdd:PRK03918 432 KKAKGKCPVCGRELTEEHRKellEEYTAE----LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKElaeqlke 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 429 ----------QELMEKYEELKRMEGHNNEYRTEIKKLKEQiLQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSS 498
Cdd:PRK03918 508 leeklkkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKE-LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFES 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 499 SDMEKQLKAEMQKAEEKAVE----HKEILSQLESLKLENHRLSETVMKLELGLHEGSLPTSPLGSIATRFLEEE--ELRS 572
Cdd:PRK03918 587 VEELEERLKELEPFYNEYLElkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyeELRE 666
|
490 500
....*....|....*....|....*...
gi 1039793427 573 HHI-----LERLDAHIEELKRESEKTVR 595
Cdd:PRK03918 667 EYLelsreLAGLRAELEELEKRREEIKK 694
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
182-544 |
1.68e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 182 KKQLREFRGNTKSF----REDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQK 257
Cdd:TIGR04523 130 EKQKKENKKNIDKFlteiKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKK 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 258 LESVElSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKA 337
Cdd:TIGR04523 210 IQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 338 SLQSQETFILEAKmQEKLQTTLKAVGTQqsverpLEDCQKErkysspgqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSL 417
Cdd:TIGR04523 289 QLNQLKSEISDLN-NQKEQDWNKELKSE------LKNQEKK----------LEEIQNQISQNNKIISQLNEQISQLKKEL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 418 ESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKL-------------------------------KEQILQADQTY 466
Cdd:TIGR04523 352 TNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqeklnqqkdeqikklqqeKELLEKEIERL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 467 SSALEGMKMEISQLTRELHQRDITIASAKCSSSDMEKQLKA-------EMQKAEEKAVEHKEILSQLESLKLENHRLSET 539
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrsinkIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
....*
gi 1039793427 540 VMKLE 544
Cdd:TIGR04523 512 VKDLT 516
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CEP63 |
pfam17045 |
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole ... |
81-343 |
3.36e-96 |
|
Centrosomal protein of 63 kDa; CEP63 is a family of eukaryotic proteins involved in centriole activity.
Pssm-ID: 465338 [Multi-domain] Cd Length: 264 Bit Score: 294.81 E-value: 3.36e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 81 LTSCEAELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYK 160
Cdd:pfam17045 1 LSSCEAELQELMKQIDIMVAHKKSEWEGQTRALETRLDIREEELLSARNTLERKHKEIGLLRQQLEELEKGKQELVAKYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 161 EELLKLQEELSRLKRSYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKAL 240
Cdd:pfam17045 81 QQLQKLQEELSKLKRSYEKLQRKQLKEAREEAKSREEDRSELSRLNGKLEEFRQKSLEWEQQRLQYQQQVASLEAQRKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 241 AEQSEIIQA-----QLANRKQKLEsvelSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKE 315
Cdd:pfam17045 161 AEQSSLIQSaayqvQLEGRKQCLE----ASQSEIQRLRSKLERAQDSLCAQELELERLRMRVSELGDSNRKLLEEQQRLL 236
|
250 260
....*....|....*....|....*...
gi 1039793427 316 EKLRESEKLLEALQEEQKELKASLQSQE 343
Cdd:pfam17045 237 EELRMSQRQLQVLQNELMELKATLQSQD 264
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
122-427 |
8.44e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 8.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 122 RELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLklqeelsRLKRSYEKLQKKQLREFRGNTKSFREDRSE 201
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ-------LLEELNKKIKDLGEEEQLRVKEKIGELEAE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 202 IERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQ---AQLANRKQKLESVELSSQSEIQHLNSKLER 278
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERkrrDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 279 AKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLqsqETFILEAKMQE-KLQT 357
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK---EDKALEIKKQEwKLEQ 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039793427 358 TLKAVGT-QQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQL 427
Cdd:TIGR02169 460 LAADLSKyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
121-440 |
1.58e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 121 DRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKLQKKQlREFRGNTKSFREDRS 200
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE-QEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 201 EIERLTGKIEEFRQKSLDWEkqRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQ---SEIQHLNSKLE 277
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLE--ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEyleKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 278 RAKDTICANELEIERLNIRVNDLmgtnmtiLQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQ----E 353
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEEL-------EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQiekkR 916
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 354 KLQTTLKA-VGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDfshSSEELLQA-------------EVTRLEGSLES 419
Cdd:TIGR02169 917 KRLSELKAkLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQ---RVEEEIRAlepvnmlaiqeyeEVLKRLDELKE 993
|
330 340
....*....|....*....|....
gi 1039793427 420 VSATCKQLS---QELMEKYEELKR 440
Cdd:TIGR02169 994 KRAKLEEERkaiLERIEEYEKKKR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
177-480 |
2.38e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 177 YEKLQKKqLREFRGN--TKSFREDRSEIERLTGKIEEFRQKSLDWEKQRliyQQQVSSLEAQRKALAEQSEIIqaqlanr 254
Cdd:TIGR02169 213 YQALLKE-KREYEGYelLKEKEALERQKEAIERQLASLEEELEKLTEEI---SELEKRLEEIEQLLEELNKKI------- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 255 KQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKE 334
Cdd:TIGR02169 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 335 LKASLQsqetfILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERkysSPGQGVLDNVLSQLDFSHSSEELLQAEVTRLE 414
Cdd:TIGR02169 362 LKEELE-----DLRAELEEVDKEFAETRDELKDYREKLEKLKREI---NELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039793427 415 GSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQIlqadQTYSSALEGMKMEISQL 480
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY----DRVEKELSKLQRELAEA 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
172-480 |
3.13e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 172 RLKRSYEKLQKKQLRefrgNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQL 251
Cdd:TIGR02168 236 ELREELEELQEELKE----AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 252 ANRKQKLESVELssqsEIQHLNSKLERAKDTICANELEIERLNIRVNDLmgtnmtilqdhrqkEEKLRESEKLLEALQEE 331
Cdd:TIGR02168 312 ANLERQLEELEA----QLEELESKLDELAEELAELEEKLEELKEELESL--------------EAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 332 QKELKASLQSQETFILEAKMQEKLQTtlkavGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEEL--LQAE 409
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLN-----NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeLEEE 448
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039793427 410 VTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLkEQILQADQTYSSALEGMKMEISQL 480
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVKALLKNQSGL 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
120-459 |
7.50e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 7.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 120 RDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEykeellklqeelsrlKRSYEKLQKKQLREFRGNTKSFREDR 199
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE---------------LEQLRKELEELSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 200 SEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVElssqSEIQHLNSklera 279
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR----EALDELRA----- 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 280 kdticanelEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFIleAKMQEKLQTTL 359
Cdd:TIGR02168 811 ---------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI--EELESELEALL 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 360 KAVgtqQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHsseELLQAEVTRLEGSLESVSATCKQLSQELMEKYE-EL 438
Cdd:TIGR02168 880 NER---ASLEEALALLRSELEELSEELRELESKRSELRREL---EELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTL 953
|
330 340
....*....|....*....|.
gi 1039793427 439 KRMEGHNNEYRTEIKKLKEQI 459
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRL 974
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
85-389 |
2.94e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 85 EAELQELMKQIDIMVAhKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQemameykeell 164
Cdd:COG1196 238 EAELEELEAELEELEA-ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA----------- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 165 klqEELSRLKRSYEKLQKKQLREfrgntksfREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQS 244
Cdd:COG1196 306 ---RLEERRRELEERLEELEEEL--------AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 245 EIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDticaNELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKL 324
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039793427 325 LEALQEEQKELKASLQSQETfiLEAKMQEKLQTTLKAVGTQQSVERPLEdcQKERKYSSPGQGVL 389
Cdd:COG1196 451 EAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLL--EAEADYEGFLEGVK 511
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-399 |
7.12e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 7.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 111 HALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSYEKLQKKQlrefrg 190
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR------ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 191 ntKSFREDRSEIERLTGKIEEfrqksldWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQS--- 267
Cdd:TIGR02168 309 --ERLANLERQLEELEAQLEE-------LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEElee 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 268 EIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKL-----LEALQEEQKELKASLQS- 341
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeLEELEEELEELQEELERl 459
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 342 -QETFILEAKMQEKLQTTLKAVGTQQSVERPLEDCQK-ERKYSSPGQGVLDNVLSQLDFS 399
Cdd:TIGR02168 460 eEALEELREELEEAEQALDAAERELAQLQARLDSLERlQENLEGFSEGVKALLKNQSGLS 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-422 |
1.23e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 144 QIEEHEKTKQEMAMEYKEELLKLQEELSRLKRSyEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQR 223
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEEL-EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 224 LIYQQQVSSLEAQRKALAEQSEIIQAQLAN-----------------RKQKLESVELSSQSEIQHLNSKLERAKDTICAN 286
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAEleeeleeleeeleeleeELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 287 ELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKM--QEKLQTTLKAVGT 364
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEalEEAAEEEAELEEE 457
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039793427 365 QQSVERPLEDCQKERKYsspGQGVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSA 422
Cdd:COG1196 458 EEALLELLAELLEEAAL---LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
46-577 |
1.45e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 46 KSRSSRTQSCcqnkedlEMEALLEGIQNRGHSGGFLTSCE-AELQELMKQIDIMVAHKKSEWEGQTHALETCLDIRDREL 124
Cdd:pfam15921 286 KASSARSQAN-------SIQSQLEIIQEQARNQNSMYMRQlSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 125 KALRSQLDMKHKEVGILHQQIEE-----HEKTKQemameykeellklqeelsrlkRSYEKLQKKQLREF-RGNTKSFRED 198
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKlladlHKREKE---------------------LSLEKEQNKRLWDRdTGNSITIDHL 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 199 RSEIERLTGKIEEFRQ--KSLDWEKQRLIYQQ------------QVSSLEAQRKALAEQSEIIQAQLANRKQKLESvels 264
Cdd:pfam15921 418 RRELDDRNMEVQRLEAllKAMKSECQGQMERQmaaiqgknesleKVSSLTAQLESTKEMLRKVVEELTAKKMTLES---- 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 265 SQSEIQHLNSKLERAKDTICANELEIERLNIRVNdlmgTNMTILQDHRQKEEKLRESEKLLEAL--QEEQKELKASLQSQ 342
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTECEALklQMAEKDKVIEILRQ 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 343 ETFILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEELlqaEVTRLEGSLESVSA 422
Cdd:pfam15921 570 QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL---EKVKLVNAGSERLR 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 423 TCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSSSD-- 500
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHam 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 501 -----MEKQ----------LKAEMQKAEEK-------------------------AVEHKEILSQLESLKLENHRLSETV 540
Cdd:pfam15921 727 kvamgMQKQitakrgqidaLQSKIQFLEEAmtnankekhflkeeknklsqelstvATEKNKMAGELEVLRSQERRLKEKV 806
|
570 580 590
....*....|....*....|....*....|....*...
gi 1039793427 541 MKLELGLHEGSLPTSPLGSIATRFLEEE-ELRSHHILE 577
Cdd:pfam15921 807 ANMEVALDKASLQFAECQDIIQRQEQESvRLKLQHTLD 844
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
222-542 |
3.94e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 3.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 222 QRLIYQQQVSSLEAQRKALAEQSEIIQAQLAnRKQKLESVELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDL- 300
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEALQSARE-KQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEk 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 301 MGTNMTILQDHRQKEEKLRESEKLLEALQeeqKELKASLQSQETFILEAKMQeKLQTTLKAVGT---------------Q 365
Cdd:pfam12128 667 DKKNKALAERKDSANERLNSLEAQLKQLD---KKHQAWLEEQKEQKREARTE-KQAYWQVVEGAldaqlallkaaiaarR 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 366 QSVERPLEDCQKERKYSSPGQGVLDNVLSQLdfshsseellQAEVTRLEGSLESvsatCKQLSQELMEKYEELK-RMEGH 444
Cdd:pfam12128 743 SGAKAELKALETWYKRDLASLGVDPDVIAKL----------KREIRTLERKIER----IAVRRQEVLRYFDWYQeTWLQR 808
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 445 NNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRELHQRDitiaSAKCSSSDMEKQLKAEMQK---------AEEK 515
Cdd:pfam12128 809 RPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASE----KQQVRLSENLRGLRCEMSKlatlkedanSEQA 884
|
330 340
....*....|....*....|....*..
gi 1039793427 516 AVEHKEILSQLESLKLENHRLSETVMK 542
Cdd:pfam12128 885 QGSIGERLAQLEDLKLKRDYLSESVKK 911
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
171-356 |
4.57e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 4.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 171 SRLKRSYEKLQKKQLREFRGNTKSFREDRSEIERLTGKIEEFRQKsldwEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQ 250
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAEL----QEELEELEEELEELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 251 LANRKQKLESVELSSQ---------------SEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNM-TILQDHRQK 314
Cdd:COG4717 125 LQLLPLYQELEALEAElaelperleeleerlEELRELEEELEELEAELAELQEELEELLEQLSLATEEELqDLAEELEEL 204
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039793427 315 EEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQ 356
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK 246
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
286-596 |
9.67e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 9.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 286 NELEIERLNI-RVNDLMG---TNMTILQDHRQKEEKLREseklleaLQEEQKELKASLQSQETFILEAKMQEKLQTTLKA 361
Cdd:COG1196 179 RKLEATEENLeRLEDILGeleRQLEPLERQAEKAERYRE-------LKEELKELEAELLLLKLRELEAELEELEAELEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 362 VGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLdfsHSSEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRM 441
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEA---QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 442 EGHNNEYRTEIKKLKEQILQADQTYSSALEgmkmEISQLTRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKE 521
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEA----ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039793427 522 ILSQLESLKLENHRLSETVMKLELGLHEgslptsplgsiatrfLEEEELRSHHILERLDAHIEELKRESEKTVRQ 596
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAE---------------LEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
122-595 |
1.59e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 122 RELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAmeykEELLKLQEELSRLKRSYEKLQ--KKQLREFRGNTKSFREDR 199
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIE----ELEKELESLEGSKRKLEEKIRelEERIEELKKEIEELEEKV 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 200 SEIERLTGKIEEFRQKSLDWEKqrliYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVElssqsEIQHLNSKLERA 279
Cdd:PRK03918 283 KELKELKEKAEEYIKLSEFYEE----YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-----ELKKKLKELEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 280 KDTICANELEIERLNIRVNDLMGTNMTILQDHRQK-EEKLRESEKLLEALQEEQKELKASLQSQETFILEAKmqEKLQTT 358
Cdd:PRK03918 354 LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKlEKELEELEKAKEEIEEEISKITARIGELKKEIKELK--KAIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 359 LKAVGTQQSVERPLEDCQKE---RKYSSPgqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLS------- 428
Cdd:PRK03918 432 KKAKGKCPVCGRELTEEHRKellEEYTAE----LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKElaeqlke 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 429 ----------QELMEKYEELKRMEGHNNEYRTEIKKLKEQiLQADQTYSSALEGMKMEISQLTRELHQRDITIASAKCSS 498
Cdd:PRK03918 508 leeklkkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKE-LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFES 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 499 SDMEKQLKAEMQKAEEKAVE----HKEILSQLESLKLENHRLSETVMKLELGLHEGSLPTSPLGSIATRFLEEE--ELRS 572
Cdd:PRK03918 587 VEELEERLKELEPFYNEYLElkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEyeELRE 666
|
490 500
....*....|....*....|....*...
gi 1039793427 573 HHI-----LERLDAHIEELKRESEKTVR 595
Cdd:PRK03918 667 EYLelsreLAGLRAELEELEKRREEIKK 694
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
199-411 |
2.16e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 199 RSEIERLTGKIEEFRQKS--LDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESV-----ELSSQSEIQH 271
Cdd:COG3206 188 RKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGpdalpELLQSPVIQQ 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 272 LNSKLERAkdticanELEIERLNIRVNDlmgtnmtilqDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFIL--EA 349
Cdd:COG3206 268 LRAQLAEL-------EAELAELSARYTP----------NHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQarEA 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039793427 350 KMQEKLQTTLKAVGTQQSVERPLEdcQKERKYSSpGQGVLDNVLSQLDFSHSSEELLQAEVT 411
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEAELR--RLEREVEV-ARELYESLLQRLEEARLAEALTVGNVR 389
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
102-532 |
4.02e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 102 KKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMameykeelLKLQEELSRLKRSYEKLQ 181
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQI--------SELKKQNNQLKDNIEKKQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 182 KKqlrefrgntksFREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLAN-RKQKLES 260
Cdd:TIGR04523 239 QE-----------INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlNNQKEQD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 261 VELSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQ 340
Cdd:TIGR04523 308 WNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 341 SQETFI--LEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERKYSSPGQGVLDNVLSQLDFSHSSEEL-----------LQ 407
Cdd:TIGR04523 388 NLESQIndLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELiiknldntresLE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 408 AEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQI---LQADQTYSSALEGMKMEISQLTREL 484
Cdd:TIGR04523 468 TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIsslKEKIEKLESEKKEKESKISDLEDEL 547
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1039793427 485 HQRDITIASAKCSSSDMEK-----QLKAEMQKAEEKAVEHKEILSQLESLKLE 532
Cdd:TIGR04523 548 NKDDFELKKENLEKEIDEKnkeieELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
208-380 |
4.65e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 208 KIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVelssQSEIQHLNSKLERAKDTI---- 283
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL----QAEIAEAEAEIEERREELgera 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 284 --------CANELE-----------IERLNIrVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQET 344
Cdd:COG3883 93 ralyrsggSVSYLDvllgsesfsdfLDRLSA-LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|....*.
gi 1039793427 345 fILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERK 380
Cdd:COG3883 172 -ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELA 206
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
199-459 |
5.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 199 RSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEI---------IQAQLANRKQKLESVELSSqSEI 269
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASS-DDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 270 QHLNSKLERAkdticanELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQK-----ELKASLQSQET 344
Cdd:COG4913 688 AALEEQLEEL-------EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelraLLEERFAAALG 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 345 FILEAKMQEKLQTTLKAVGTQQS-VERPLEDCQKE--RKYSSPGQGVLDNVLSQLDFshsseellQAEVTRLEGSlesvs 421
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNrAEEELERAMRAfnREWPAETADLDADLESLPEY--------LALLDRLEED----- 827
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1039793427 422 atckqlsqELMEKYEELKRMEGHNN---------EYRTEIKKLKEQI 459
Cdd:COG4913 828 --------GLPEYEERFKELLNENSiefvadllsKLRRAIREIKERI 866
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
85-292 |
8.59e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 8.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 85 EAELQELMKQIDIM------VAHKKSEWEGQTHALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAME 158
Cdd:COG4942 26 EAELEQLQQEIAELekelaaLKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 159 YkeellklqeelSRLKRSYEKLQKKQLREFRGNTKSF--------------REDRSEIERLTGKIEEFRQKSLDWEKQRL 224
Cdd:COG4942 106 L-----------AELLRALYRLGRQPPLALLLSPEDFldavrrlqylkylaPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039793427 225 IYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLEsvelSSQSEIQHLNSKLERAKDTICANELEIER 292
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELA----ELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
227-525 |
1.56e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 227 QQQVSSLEAQRKALAEQseiiQAQLANRKQKLESVELS-SQSEIQHLNSKLErakdticAN-ELEIERLNIRVNDLMGTn 304
Cdd:COG3096 784 EKRLEELRAERDELAEQ----YAKASFDVQKLQRLHQAfSQFVGGHLAVAFA-------PDpEAELAALRQRRSELERE- 851
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 305 mtiLQDHRQKEEKLRESeklLEALQEEQKELKAsLQSQETFILEAKMQEKLQTtlkavgtqqsVERPLEDCQKERKY-SS 383
Cdd:COG3096 852 ---LAQHRAQEQQLRQQ---LDQLKEQLQLLNK-LLPQANLLADETLADRLEE----------LREELDAAQEAQAFiQQ 914
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 384 PGQ--GVLDNVLSQLDFSHSSEELLQAEVTRLEGSLESVSATCKQLSqELMEK-----YEELKRMEGHNNEYRTeikKLK 456
Cdd:COG3096 915 HGKalAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALS-EVVQRrphfsYEDAVGLLGENSDLNE---KLR 990
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039793427 457 EQILQADQTYSSALEGMKMEISQLTrELHQRDITIASAKCSSSDMEKQLKAEMQK--------AEEKAVEHKEILSQ 525
Cdd:COG3096 991 ARLEQAEEARREAREQLRQAQAQYS-QYNQVLASLKSSRDAKQQTLQELEQELEElgvqadaeAEERARIRRDELHE 1066
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
182-544 |
1.68e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 182 KKQLREFRGNTKSF----REDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQK 257
Cdd:TIGR04523 130 EKQKKENKKNIDKFlteiKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKK 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 258 LESVElSSQSEIQHLNSKLERAKDTICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKA 337
Cdd:TIGR04523 210 IQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 338 SLQSQETFILEAKmQEKLQTTLKAVGTQqsverpLEDCQKErkysspgqgvLDNVLSQLDFSHSSEELLQAEVTRLEGSL 417
Cdd:TIGR04523 289 QLNQLKSEISDLN-NQKEQDWNKELKSE------LKNQEKK----------LEEIQNQISQNNKIISQLNEQISQLKKEL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 418 ESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKL-------------------------------KEQILQADQTY 466
Cdd:TIGR04523 352 TNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLesqindleskiqnqeklnqqkdeqikklqqeKELLEKEIERL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 467 SSALEGMKMEISQLTRELHQRDITIASAKCSSSDMEKQLKA-------EMQKAEEKAVEHKEILSQLESLKLENHRLSET 539
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrsinkIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
....*
gi 1039793427 540 VMKLE 544
Cdd:TIGR04523 512 VKDLT 516
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
83-349 |
3.26e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 83 SCEAELQELMKQIDIMVAhKKSEWEgqthALETCLDIRDRELKALRSQLDMKHKEVGILHQQIEEHEKTKQEMAMEYKEE 162
Cdd:COG4913 665 SAEREIAELEAELERLDA-SSDDLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 163 LLKLQEELSRL--KRSYEKLQKKQLREFRGN-TKSFREDRSEIERLTGKIEE-FRQKSLDWekqRLIYQQQVSSLEAQRK 238
Cdd:COG4913 740 EDLARLELRALleERFAAALGDAVERELRENlEERIDALRARLNRAEEELERaMRAFNREW---PAETADLDADLESLPE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 239 ALAEQSEIIQAQLANRKQKL-ESVELSSQSEIQHLNSKLERAKDTIcanELEIERLNirvndlmgtnmTILQDHRQKEE- 316
Cdd:COG4913 817 YLALLDRLEEDGLPEYEERFkELLNENSIEFVADLLSKLRRAIREI---KERIDPLN-----------DSLKRIPFGPGr 882
|
250 260 270
....*....|....*....|....*....|....*
gi 1039793427 317 --KLRESEKLLEALQEEQKELKASLQSQETFILEA 349
Cdd:COG4913 883 ylRLEARPRPDPEVREFRQELRAVTSGASLFDEEL 917
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
166-380 |
3.59e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 166 LQEELSRLKRSYEKLQKKQlrefrgntksfREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSE 245
Cdd:COG4942 32 LQQEIAELEKELAALKKEE-----------KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 246 IIQAQLANRKQKLESveLSSQSEIQHLNSKlerakdticANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLL 325
Cdd:COG4942 101 AQKEELAELLRALYR--LGRQPPLALLLSP---------EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1039793427 326 EALQEEQKELKASLQSQETfILEAKMQEKLQTTLKAVGTQQSVERPLEDCQKERK 380
Cdd:COG4942 170 EAERAELEALLAELEEERA-ALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
|
| Gp58 |
pfam07902 |
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ... |
302-502 |
3.76e-03 |
|
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.
Pssm-ID: 369586 [Multi-domain] Cd Length: 594 Bit Score: 40.32 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 302 GTNMTILQDHRQKEEKLRES-EKLLEALQEEQKELKASLQSQETFILEAKMQEK--LQTTLKAVGTQQSVERPLEDCQKE 378
Cdd:pfam07902 132 GIATRISEDTDKKLALINETiSGIRREYQDADRQLSSSYQAGIEGLKATMASDKigLQAEIQASAQGLSQRYDNEIRKLS 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 379 RKYSSPGQGVLDNVLSQLD-----FSHSSEELLQAEVTRLEGSLESVSATCKQLSQelmekyeELKRMEGHNNEYRTEIK 453
Cdd:pfam07902 212 AKITTTSSGTTEAYESKLDdlraeFTRSNQGMRTELESKISGLQSTQQSTAYQISQ-------EISNREGAVSRVQQDLD 284
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1039793427 454 KLKEQILQADQTYSS---ALEGMKMEISQLTRELHQRDITIA---SAKCSSSDME 502
Cdd:pfam07902 285 SYQRRLQDAEKNYSSltqTVKGLQSTVSDPNSKLESRITQLAgliEQKVTRGDVE 339
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
171-545 |
4.33e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.09 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 171 SRLKRSYEKLQKKQlREFRGNTKSFREDRSEIERLTGKIEEFRQKSLDWEKQR--------LIYQQQVSSLEAQRKALAE 242
Cdd:pfam05483 99 AELKQKENKLQENR-KIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENnatrhlcnLLKETCARSAEKTKKYEYE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 243 QSEIIQA--QLANRKQKLESV--ELSSQSEIQHLNSKLERAKDTICANELEiERLNIRVNDLMGTNMTILQDHRQKEEKL 318
Cdd:pfam05483 178 REETRQVymDLNNNIEKMILAfeELRVQAENARLEMHFKLKEDHEKIQHLE-EEYKKEINDKEKQVSLLLIQITEKENKM 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 319 RESEKLLEALQEE--QKELKASLQSQ-------ETFILEAKMQEKLQTTLKAVGTQQSVERPL-----------EDCQKE 378
Cdd:pfam05483 257 KDLTFLLEESRDKanQLEEKTKLQDEnlkelieKKDHLTKELEDIKMSLQRSMSTQKALEEDLqiatkticqltEEKEAQ 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 379 RKYSSPGQGVLDNVLSQLDFSHSS-EELLQAEVTRLEGSLESVsatcKQLSQELMEKYEELKRMEGHNNEYRTEIKKLK- 456
Cdd:pfam05483 337 MEELNKAKAAHSFVVTEFEATTCSlEELLRTEQQRLEKNEDQL----KIITMELQKKSSELEEMTKFKNNKEVELEELKk 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 457 -----EQILQADQTYSSALEGMKMEISQLTRELHQRDITIasakcssSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKL 531
Cdd:pfam05483 413 ilaedEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEI-------HDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKL 485
|
410
....*....|....
gi 1039793427 532 ENHRLSETVMKLEL 545
Cdd:pfam05483 486 KNIELTAHCDKLLL 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-600 |
5.54e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 404 ELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTY---SSALEGMKMEISQL 480
Cdd:TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyalANEISRLEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 481 TRELHQRDITIASAKCSSSDMEKQLKAEMQKAEEKAVEHKEILSQLESLKLENHRLSETVMKLELGLHEgsLPTSPLGSI 560
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--LEEQLETLR 385
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039793427 561 ATRFLEEEELRSHHI-LERLDAHIEELKRESEKTVRQFTAL 600
Cdd:TIGR02168 386 SKVAQLELQIASLNNeIERLEARLERLEDRRERLQQEIEEL 426
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
125-595 |
8.44e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 39.35 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 125 KALRSQLDMKHKEVGILHQQIEEHEKTKQ--EMAMEYKEELLKLQEELSRLKRSYEKLQKKQLREFRGNTKSFREDRSEI 202
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEakKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 203 ERLTGKIEEFRQKsldwEKQRLIYQQQVSSLEAQRKAlAEQSEIIQAQLANRKQKLESVELSSQSEIQHLNSKLERAKDT 282
Cdd:PTZ00121 1447 DEAKKKAEEAKKA----EEAKKKAEEAKKADEAKKKA-EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 283 ICANELEIERLNIRVNDLMGTNMTILQDHRQKEEKLRESEKLLEALQEEQKELKASLQSQETFILEAKMQEKLQTTLKAV 362
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 363 GTQQSVERplEDCQKERkysspgqgvldnvlsqldfshssEELLQAEVTRLEGSLESVSATCKQLSQELMEKYEELKRME 442
Cdd:PTZ00121 1602 EEEKKMKA--EEAKKAE-----------------------EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039793427 443 GHNNEYRTEIKKLKEQILQADQTYSSALEGMKMEISQLTRElhqrditiASAKCSSSDMEKQLKAEMQKAEEKAVEHKEI 522
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--------AEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039793427 523 LSQLESLKLENHRLSETVMKLELGLHEGSLPTSPLGSIATRFLEEEELRSHHILERLDAHIEELKRESEKTVR 595
Cdd:PTZ00121 1729 KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| |
