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Conserved domains on  [gi|1039743050|ref|XP_017170856|]
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adhesion G-protein coupled receptor V1 isoform X5 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tm_GPCRs super family cl28897
seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary ...
5193-5433 3.71e-30

seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary model represents the seven-transmembrane (7TM) receptors, often referred to as G protein-coupled receptors (GPCRs), which transmit physiological signals from the outside of the cell to the inside via G proteins. GPCRs constitute the largest known superfamily of transmembrane receptors across the three kingdoms of life that respond to a wide variety of extracellular stimuli including peptides, lipids, neurotransmitters, amino acids, hormones, and sensory stimuli such as light, smell and taste. All GPCRs share a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. However, some 7TM receptors, such as the type 1 microbial rhodopsins, do not activate G proteins. Based on sequence similarity, GPCRs can be divided into six major classes: class A (the rhodopsin-like family), class B (the Methuselah-like, adhesion and secretin-like receptor family), class C (the metabotropic glutamate receptor family), class D (the fungal mating pheromone receptors), class E (the cAMP receptor family), and class F (the frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


The actual alignment was detected with superfamily member cd15040:

Pssm-ID: 475119 [Multi-domain]  Cd Length: 253  Bit Score: 122.68  E-value: 3.71e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5193 GLCLAVVSHMFCAR-HSMFAAKLLTHMMVASLGTQILFLASAyaSPHLSEESCSAVAAVAHYLYLCQFSWMLIQSVNFWY 5271
Cdd:cd15040     18 GLLLTIITYILFRKlRKRKPTKILLNLCLALLLANLLFLFGI--NSTDNPVLCTAVAALLHYFLLASFMWMLVEALLLYL 95
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5272 VLV-VSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHRSmpqiyglihGDLCFIPNIYAALFtAALVPLMCLVVV- 5349
Cdd:cd15040     96 RLVkVFGTYPRHFILKYALIGWGLPLIIVIITLAVDPDSYGNS---------SGYCWLSNGNGLYY-AFLGPVLLIILVn 165
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5350 FVVFI----HAYQLKPQwkgyDDVFRGRTNAAEIPLILYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQGLYVFVV 5425
Cdd:cd15040    166 LVIFVlvlrKLLRLSAK----RNKKKRKKTKAQLRAAVSLFFLLGLTWIFGILAIFGARVVFQYLFAIFNSLQGFFIFIF 241

                   ....*...
gi 1039743050 5426 YFILHNQT 5433
Cdd:cd15040    242 HCLRNKEV 249
Laminin_G_3 pfam13385
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ...
622-771 1.77e-17

Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.


:

Pssm-ID: 463865 [Multi-domain]  Cd Length: 151  Bit Score: 82.43  E-value: 1.77e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  622 PFRNNTIANFTFSAWVMPNANTNGF-LIAKDDSHGSIYYGVKiQTNETHVTLslhYKTFGSNVTYIAKSTVmkylEEGVW 700
Cdd:pfam13385   10 PDALLPTSDFTVSAWVKPDSLPGWArAIISSSGGGGYSLGLD-GDGRLRFAV---NGGNGGWDTVTSGASV----PLGQW 81
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039743050  701 LHVLIILDDGIIEFYLDGKAMPRGikSLKGEAITDGPGILRIGAGMDGGARFTGWMQDVRTYERKLTPEEI 771
Cdd:pfam13385   82 THVAVTYDGGTLRLYVNGVLVGSS--TLTGGPPPGTGGPLYIGRSPGGDDYFNGLIDEVRIYDRALSAAEI 150
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3544-3632 4.79e-17

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


:

Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 79.22  E-value: 4.79e-17
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  3544 GRFSFSHEQLHVSEAAQRVNVTVVRSGGSFGRARVLYETGSRTAEAGWDFVPASGELLFEAREKMKSLYIDILDDNLPEG 3623
Cdd:smart00237    2 GSVGFEQPVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEK 81

                    ....*....
gi 1039743050  3624 PEEFVLAIT 3632
Cdd:smart00237   82 DETFYVRLS 90
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3528-3764 1.86e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.99  E-value: 1.86e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3528 ASVSARITMVASDAPYGRFSFSHEQLHVSEAAQRVNVTVVRSGGSFGR-ARVLYETGSRTAEAGWDFVPASGELLFEARE 3606
Cdd:TIGR00845  384 VSMHEVATDDEENDPVSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGE 463
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3607 KMKSLYIDILDDNLPEGPEEFVLAITRVDLQgrgydftiQENGLQIDQPPE----IGNISIVRIIIMKNDNAeGIIEFDP 3682
Cdd:TIGR00845  464 TQKEFRIGIIDDDIFEEDEHFYVRLSNLRVG--------SEDGILEANHVSavaqLASPNTATVTILDDDHA-GIFTFEE 534
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3683 KYTDISveEDAGVITLPVLRLHGTYGHVSADFSSRGFSAVPGG--YVLHGSSVTFQHGQNLSFINVSIIDDNGSEFEKQF 3760
Cdd:TIGR00845  535 DVFHVS--ESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGkdFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTF 612

                   ....
gi 1039743050 3761 EILL 3764
Cdd:TIGR00845  613 FIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1881-2065 2.41e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.61  E-value: 2.41e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1881 SVELVIYRTGGSLGQ-VMVEWRVVGGTATEGLDFMGAGDILTFAEGETKKMAILTILDDSEPEDNESILVRL----VATE 1955
Cdd:TIGR00845  417 TVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLsnlrVGSE 496
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1956 GGSRI---------LPSSDTVTVNILANDNvAGIVSFQTASRSVIGHEGEMlQFHVVRTPPGRGNVTVNWKVV---GQNL 2023
Cdd:TIGR00845  497 DGILEanhvsavaqLASPNTATVTILDDDH-AGIFTFEEDVFHVSESIGIM-EVKVLRTSGARGTVIVPYRTVegtARGG 574
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1039743050 2024 EVNFANFTGQLFFSEGTLNKTIFVHLLDDNIPEEKEVYQVVL 2065
Cdd:TIGR00845  575 GKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1005-1227 2.88e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.22  E-value: 2.88e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1005 HITVQEEDGEIRLLVIRAQGLLGR-VTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKVE 1083
Cdd:TIGR00845  408 HYTCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVR 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1084 LLNLDGGVSDLFRVDGSGSGEadtdfflppvlphASLGVASQILVTIAASDHAhGVFEFSPESLFVSgtepeDGYSTVVL 1163
Cdd:TIGR00845  488 LSNLRVGSEDGILEANHVSAV-------------AQLASPNTATVTILDDDHA-GIFTFEEDVFHVS-----ESIGIMEV 548
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 1164 NVTRTRGALSAVTLQ-WKVDSDLDG---DLAITSGNITFETGQRIASITVEILSDEEPELDKALTVSI 1227
Cdd:TIGR00845  549 KVLRTSGARGTVIVPyRTVEGTARGggkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1160-1354 5.08e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 79.45  E-value: 5.08e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1160 TVVLNVTRTRGALS-AVTLQWKVDsdlDG------DLAITSGNITFETGQRIASITVEILSDEEPELDKALTVSILNVSS 1232
Cdd:TIGR00845  417 TVALTVVRRGGDLTnTVYVDYRTE---DGtanagsDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRV 493
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1233 GS---------------LGVLTNATLTILaSDDPYGVFIFPNKTrpLSVEEATQNVTLSIIRLKGLMGEVAVSYATIDDM 1297
Cdd:TIGR00845  494 GSedgileanhvsavaqLASPNTATVTIL-DDDHAGIFTFEEDV--FHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGT 570
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 1298 ekppyfppnlarATQGG-DYISASGLALFRANQTEATITISILDDAEPERSESVFIEL 1354
Cdd:TIGR00845  571 ------------ARGGGkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1771-1951 1.62e-13

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 77.91  E-value: 1.62e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1771 GQAVAGSDYEPvTRQWAVILEGDEFANLTVSVLPDDAPEMDESFLISLLEVHL-----MNISDSFKNQPTIGHPNTSAVV 1845
Cdd:TIGR00845  442 GTANAGSDYEF-TEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVgsedgILEANHVSAVAQLASPNTATVT 520
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1846 IgLNGDAFGVFiiysvspnTSEDGLcVEVQEQPQTsVELVIYRTGGSLGQVMVEWRVVGGTATEGL-DFMGAGDILTFAE 1924
Cdd:TIGR00845  521 I-LDDDHAGIF--------TFEEDV-FHVSESIGI-MEVKVLRTSGARGTVIVPYRTVEGTARGGGkDFEDTCGELEFEN 589
                          170       180
                   ....*....|....*....|....*..
gi 1039743050 1925 GETKKMAILTILDDSEPEDNESILVRL 1951
Cdd:TIGR00845  590 DETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2151-2351 1.33e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.83  E-value: 1.33e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2151 TEGNLAEPESDFIPVVGSLVLEEGETTAAISITVLEDDIPELKEYFLVNLTHV------DLIMAPLTSSPPRLDSEgLTA 2224
Cdd:TIGR00845  439 TEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLrvgsedGILEANHVSAVAQLASP-NTA 517
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2225 QIVIDANDGAqGMIEWQRNRFEVNETDGVVTLVAQRSRAALGQVSLFMYAQNLEAQAGL-DYMCTPQILHFTDGERFKHV 2303
Cdd:TIGR00845  518 TVTILDDDHA-GIFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGkDFEDTCGELEFENDETEKTI 596
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1039743050 2304 DVMILDDDMPEGDERFQLLLTNPSPGLELGKNTIALITVLANDDGPGV 2351
Cdd:TIGR00845  597 RVKIVDDEEYEKNDTFFIELGEPRWAKRGIKAALLLNETITDDDQKLT 644
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1404-1599 1.81e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.44  E-value: 1.81e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1404 HVAENHVGPIINVTRTGGTFAD-VSVKFKAVPITAAAGEDYSIASSDVVLLEGETTKAVPIYIINDIYPELEETFLVQLL 1482
Cdd:TIGR00845  410 TCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLS 489
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1483 N---ETTGGATLGPLREAVITIEA---------SDDPYGLFGFQNTKFIVEEpefNSVRVNVPIIRNSGTLGNVTVQWvA 1550
Cdd:TIGR00845  490 NlrvGSEDGILEANHVSAVAQLASpntatvtilDDDHAGIFTFEEDVFHVSE---SIGIMEVKVLRTSGARGTVIVPY-R 565
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1039743050 1551 IINGQfATG---DLRVVSGNVTFAPGETIQTLLLEVLADDVPEIEEVVQVQL 1599
Cdd:TIGR00845  566 TVEGT-ARGggkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
902-1084 2.63e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.06  E-value: 2.63e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  902 DFANASGTITFLPWQRSEVLNLYVLDEDMPELNEYFRVTL--VSAVPGDGKLGSTPISGASIDPEKETTGITVKASDHPy 979
Cdd:TIGR00845  449 DYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLsnLRVGSEDGILEANHVSAVAQLASPNTATVTILDDDHA- 527
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  980 GLMQFstglppqpEDSmslpassvpHITVQEEDGEIRLLVIRAQGLLGRVTVGFRTVSLTA-FSPEDYQSTAGTLEFQSG 1058
Cdd:TIGR00845  528 GIFTF--------EED---------VFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTArGGGKDFEDTCGELEFEND 590
                          170       180
                   ....*....|....*....|....*.
gi 1039743050 1059 ERYKYIFVNITDNSIPELEKSFKVEL 1084
Cdd:TIGR00845  591 ETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
281-484 2.64e-11

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 70.59  E-value: 2.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  281 NDDP--VYFaEPCVLRVQE--GETANFTVLRNGSVDGACTVQYATVDGKASGEEgDFAPVEKgeTLVFEVGSREQSISVH 356
Cdd:TIGR00845  396 NDPVskIFF-EPGHYTCLEncGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGS-DYEFTEG--TLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  357 VKDDGIPETDEPFYIVLFN---STGDTVVYEYG-----------VATVIIeANDDPNGVFSLE-PIDKAVEEGKTNAFWI 421
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLSNlrvGSEDGILEANHvsavaqlaspnTATVTI-LDDDHAGIFTFEeDVFHVSESIGIMEVKV 550
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039743050  422 LRHRGHFGNVSVAWQLFQNASLQPGQEFYETSGTVNFTDGEETKPVILRAFPDRIPEFNE-FYI 484
Cdd:TIGR00845  551 LRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDtFFI 614
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2279-2450 4.44e-10

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 66.74  E-value: 4.44e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2279 AQAGLDYMCTPQILHFTDGERFKHVDVMILDDDMPEGDERFQLLLTNPSPGLE--------------LGKNTIALITVLa 2344
Cdd:TIGR00845  444 ANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEdgileanhvsavaqLASPNTATVTIL- 522
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2345 NDDGPGVLSFNNSghiflreptSLYVQESVAVLVIVREPAQGLFGTVAVQFVVTEVNSSTESKDLSPSKGFIVLEEGVRS 2424
Cdd:TIGR00845  523 DDDHAGIFTFEED---------VFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETE 593
                          170       180
                   ....*....|....*....|....*.
gi 1039743050 2425 KTLRISAILDTEPEMDEHFVCTLFNP 2450
Cdd:TIGR00845  594 KTIRVKIVDDEEYEKNDTFFIELGEP 619
Calx-beta super family cl02522
Calx-beta domain;
4278-4370 5.28e-10

Calx-beta domain;


The actual alignment was detected with superfamily member pfam03160:

Pssm-ID: 413355 [Multi-domain]  Cd Length: 91  Bit Score: 59.19  E-value: 5.28e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4278 GVFQFSPSsrNITVSEDAQTIRICVQRLFGFHGDLIKVSYETTAGSAKPPEDFEAVqKGEVFFQRFQPEIDFEITIINDQ 4357
Cdd:pfam03160    2 GVIGFEPP--TYQVSENDGVAEVCVVRMSGTLRRTVVVPYRTEDGTATAGDDYEPV-EGELVFGPGETEKCINVTIIDDD 78
                           90
                   ....*....|...
gi 1039743050 4358 LPEIEETFYINLT 4370
Cdd:pfam03160   79 VYEGDENFFVLLS 91
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2863-3019 8.32e-09

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 62.50  E-value: 8.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2863 SDFIPSLGELIFEPGDKEAIIAVNVLDDTVPEKEESFRVQLKSPRGGAEIGINSSVR--------------VTVLANDGA 2928
Cdd:TIGR00845  448 SDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHvsavaqlaspntatVTILDDDHA 527
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2929 yGVVAFAqnslHKQLEELERDSLVTLNVERLRGTHGRI-----TVAWEAAGSVSDVFPTSGVISFTEDQAMSMITLTVLA 3003
Cdd:TIGR00845  528 -GIFTFE----EDVFHVSESIGIMEVKVLRTSGARGTVivpyrTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVD 602
                          170
                   ....*....|....*.
gi 1039743050 3004 DDLPELSEAVVVTLTQ 3019
Cdd:TIGR00845  603 DEEYEKNDTFFIELGE 618
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3071-3283 2.15e-07

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 57.88  E-value: 2.15e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3071 ENITVVQLHIVRDKGlfgDISIHLIAkpnfllhinNQATED------EDFVLQDSVIIMKENIKETHAEVAILPDEVPEL 3144
Cdd:TIGR00845  413 ENCGTVALTVVRRGG---DLTNTVYV---------DYRTEDgtanagSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEE 480
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3145 DEGLIVTIAAVNLVNPNFPAEQPRVQR------PRMESAEILieeNDDPRGIFNF-----HVVRDVGgviiahegpppln 3213
Cdd:TIGR00845  481 DEHFYVRLSNLRVGSEDGILEANHVSAvaqlasPNTATVTIL---DDDHAGIFTFeedvfHVSESIG------------- 544
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039743050 3214 VLQVPVVRMAGTFETVNVYWKATPDSA--GLEDFQPSHGMLQFADGQVIAPILVTIIDDSEFELLETFTISL 3283
Cdd:TIGR00845  545 IMEVKVLRTSGARGTVIVPYRTVEGTArgGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
49-259 3.39e-06

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 54.03  E-value: 3.39e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   49 ENDDPGGIFefsYDSRGPYVIKEGDAVELRITRSRGSLVKQ-FLRFHVEPRESN---EFYGNMGVLEFTPGEREVVITLL 124
Cdd:TIGR00845  395 ENDPVSKIF---FEPGHYTCLENCGTVALTVVRRGGDLTNTvYVDYRTEDGTANagsDYEFTEGTLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  125 TRLDGTPELDEHFWVILSS-------------HGERESKLGCATLVNITILKNDYPhGIIEFVSDGLSASikeskgEDIY 191
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLSNlrvgsedgileanHVSAVAQLASPNTATVTILDDDHA-GIFTFEEDVFHVS------ESIG 544
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039743050  192 HAVYGVIRTRGNFGAVNVS-WMVSPDFT---QDVFPVQGTVCFGDQEFFKNITVYSLVDEIPEEMEEFTIIL 259
Cdd:TIGR00845  545 IMEVKVLRTSGARGTVIVPyRTVEGTARgggKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
4154-4369 5.97e-05

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 49.79  E-value: 5.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4154 VPEEAANSQVGFESAAFQLMDiKAGTSQVMVSRKGTYGR--LSVAWTT--GYA-PGSEipepivignMTPTLGSLSFVHG 4228
Cdd:TIGR00845  393 DEENDPVSKIFFEPGHYTCLE-NCGTVALTVVRRGGDLTntVYVDYRTedGTAnAGSD---------YEFTEGTLVFKPG 462
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4229 EERKGVLLWTFPSP--GRPEAFVLHLSGLRSSAAGG----------AQLRSGFT-TAEI---EPMGVFQFSpsSRNITVS 4292
Cdd:TIGR00845  463 ETQKEFRIGIIDDDifEEDEHFYVRLSNLRVGSEDGileanhvsavAQLASPNTaTVTIlddDHAGIFTFE--EDVFHVS 540
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 4293 EDAQTIRICVQRLFGFHGDLIkVSYETTAGSAKP-PEDFEAVQkGEVFFQRFQPEIDFEITIINDQLPEIEETFYINL 4369
Cdd:TIGR00845  541 ESIGIMEVKVLRTSGARGTVI-VPYRTVEGTARGgGKDFEDTC-GELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
EPTP pfam03736
EPTP domain; Mutations in the LGI/Epitempin gene can result in a special form of epilepsy, ...
2672-2713 9.67e-05

EPTP domain; Mutations in the LGI/Epitempin gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein contains a large repeat in its C terminal section. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold.


:

Pssm-ID: 461033  Cd Length: 41  Bit Score: 42.46  E-value: 9.67e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1039743050 2672 FAWHQTLPVRGVLGMALFSRGGSVFLAISQANIRqtSLLFTW 2713
Cdd:pfam03736    2 FVPYQTIPTRGARDVEPFSIGGDLFLAVANFSGD--SVIYRW 41
GPS super family cl02559
GPCR proteolysis site, GPS, motif; The GPS motif is found in GPCRs, and is the site for ...
5126-5172 6.10e-04

GPCR proteolysis site, GPS, motif; The GPS motif is found in GPCRs, and is the site for auto-proteolysis, so is thus named, GPS. The GPS motif is a conserved sequence of ~40 amino acids containing canonical cysteine and tryptophan residues, and is the most highly conserved part of the domain. In most, if not all, cell-adhesion GPCRs these undergo autoproteolysis in the GPS between a conserved aliphatic residue (usually a leucine) and a threonine, serine, or cysteine residue. In higher eukaryotes this motif is found embedded in the C-terminal beta-stranded part of a GAIN domain - GPCR-Autoproteolysis INducing (GAIN). The GAIN-GPS domain adopts a fold in which the GPS motif, at the C-terminus, forms five beta-strands that are tightly integrated into the overall GAIN domain. The GPS motif, evolutionarily conserved from tetrahymena to mammals, is the only extracellular domain shared by all human cell-adhesion GPCRs and PKD proteins, and is the locus of multiple human disease mutations. The GAIN-GPS domain is both necessary and sufficient functionally for autoproteolysis, suggesting an autoproteolytic mechanism whereby the overall GAIN domain fine-tunes the chemical environment in the GPS to catalyze peptide bond hydrolysis. In the cell-adhesion GPCRs and PKD proteins, the GPS motif is always located at the end of their long N-terminal extracellular regions, immediately before the first transmembrane helix of the respective protein.


The actual alignment was detected with superfamily member smart00303:

Pssm-ID: 470616  Cd Length: 49  Bit Score: 40.83  E-value: 6.10e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 1039743050  5126 HTSRCLLWNQAAASWlsDSQFCKVVEDASDYVECACSHMSVYAVYAQ 5172
Cdd:smart00303    1 FNPICVFWDESSGEW--STRGCELLETNGTHTTCSCNHLTTFAVLMD 45
caca super family cl36745
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3671-3897 1.03e-03

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00845:

Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 45.94  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3671 NDNAEGIIeFDP-KYTdisVEEDAGVITLPVLRLHGTYG-HVSADFSSRGFSAVPGG-YVLHGSSVTFQHGQNLSFINVS 3747
Cdd:TIGR00845  396 NDPVSKIF-FEPgHYT---CLENCGTVALTVVRRGGDLTnTVYVDYRTEDGTANAGSdYEFTEGTLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3748 IIDDNGSEFEKQFEILL--------------IGATGGAILGRHLVSKITIAKSDSPfGIIRFlNQSKISLPNPSSTMALH 3813
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLsnlrvgsedgileaNHVSAVAQLASPNTATVTILDDDHA-GIFTF-EEDVFHVSESIGIMEVK 549
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3814 LVleRTGGLLGEIQVSWEVVGPDAEEplppHNGDFADpVSGTVSFGDGEgGVRSIILRVCPHEETEAEETFIVQLKPLRE 3893
Cdd:TIGR00845  550 VL--RTSGARGTVIVPYRTVEGTARG----GGKDFED-TCGELEFENDE-TEKTIRVKIVDDEEYEKNDTFFIELGEPRW 621

                   ....
gi 1039743050 3894 AKLD 3897
Cdd:TIGR00845  622 AKRG 625
Calx-beta super family cl02522
Calx-beta domain;
849-941 1.07e-03

Calx-beta domain;


The actual alignment was detected with superfamily member pfam03160:

Pssm-ID: 413355 [Multi-domain]  Cd Length: 91  Bit Score: 41.08  E-value: 1.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  849 GLFGFTGACIPEMTEEGSTVSCVVeRTRGAL-GYVHV-FYTISQIESEGinylvDDFANASGTITFLPWQRSEVLNLYVL 926
Cdd:pfam03160    2 GVIGFEPPTYQVSENDGVAEVCVV-RMSGTLrRTVVVpYRTEDGTATAG-----DDYEPVEGELVFGPGETEKCINVTII 75
                           90
                   ....*....|....*
gi 1039743050  927 DEDMPELNEYFRVTL 941
Cdd:pfam03160   76 DDDVYEGDENFFVLL 90
Calx-beta super family cl02522
Calx-beta domain;
3310-3401 2.91e-03

Calx-beta domain;


The actual alignment was detected with superfamily member smart00237:

Pssm-ID: 413355 [Multi-domain]  Cd Length: 90  Bit Score: 39.93  E-value: 2.91e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  3310 GIFGFEKKTVMV---DGPllsddpdsyVTLTVVRSPGGKGAVRLHWAIEE---KAKDDLSPLNGTLYFDETESQKSVILH 3383
Cdd:smart00237    2 GSVGFEQPVYTVsesDGE---------VEVCVVRTGGARGPVVVPYSTEDgtaTAGSDYEPVPGELTFPPGETEKEIRIK 72
                            90
                    ....*....|....*...
gi 1039743050  3384 TLKDGMVGEDRRFIIELT 3401
Cdd:smart00237   73 IIDDDIYEKDETFYVRLS 90
 
Name Accession Description Interval E-value
7tmB2_Adhesion cd15040
adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G ...
5193-5433 3.71e-30

adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G protein-coupled receptors; The B2 subfamily of class B GPCRs consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320168 [Multi-domain]  Cd Length: 253  Bit Score: 122.68  E-value: 3.71e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5193 GLCLAVVSHMFCAR-HSMFAAKLLTHMMVASLGTQILFLASAyaSPHLSEESCSAVAAVAHYLYLCQFSWMLIQSVNFWY 5271
Cdd:cd15040     18 GLLLTIITYILFRKlRKRKPTKILLNLCLALLLANLLFLFGI--NSTDNPVLCTAVAALLHYFLLASFMWMLVEALLLYL 95
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5272 VLV-VSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHRSmpqiyglihGDLCFIPNIYAALFtAALVPLMCLVVV- 5349
Cdd:cd15040     96 RLVkVFGTYPRHFILKYALIGWGLPLIIVIITLAVDPDSYGNS---------SGYCWLSNGNGLYY-AFLGPVLLIILVn 165
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5350 FVVFI----HAYQLKPQwkgyDDVFRGRTNAAEIPLILYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQGLYVFVV 5425
Cdd:cd15040    166 LVIFVlvlrKLLRLSAK----RNKKKRKKTKAQLRAAVSLFFLLGLTWIFGILAIFGARVVFQYLFAIFNSLQGFFIFIF 241

                   ....*...
gi 1039743050 5426 YFILHNQT 5433
Cdd:cd15040    242 HCLRNKEV 249
Laminin_G_3 pfam13385
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ...
622-771 1.77e-17

Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.


Pssm-ID: 463865 [Multi-domain]  Cd Length: 151  Bit Score: 82.43  E-value: 1.77e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  622 PFRNNTIANFTFSAWVMPNANTNGF-LIAKDDSHGSIYYGVKiQTNETHVTLslhYKTFGSNVTYIAKSTVmkylEEGVW 700
Cdd:pfam13385   10 PDALLPTSDFTVSAWVKPDSLPGWArAIISSSGGGGYSLGLD-GDGRLRFAV---NGGNGGWDTVTSGASV----PLGQW 81
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039743050  701 LHVLIILDDGIIEFYLDGKAMPRGikSLKGEAITDGPGILRIGAGMDGGARFTGWMQDVRTYERKLTPEEI 771
Cdd:pfam13385   82 THVAVTYDGGTLRLYVNGVLVGSS--TLTGGPPPGTGGPLYIGRSPGGDDYFNGLIDEVRIYDRALSAAEI 150
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3544-3632 4.79e-17

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 79.22  E-value: 4.79e-17
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  3544 GRFSFSHEQLHVSEAAQRVNVTVVRSGGSFGRARVLYETGSRTAEAGWDFVPASGELLFEAREKMKSLYIDILDDNLPEG 3623
Cdd:smart00237    2 GSVGFEQPVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEK 81

                    ....*....
gi 1039743050  3624 PEEFVLAIT 3632
Cdd:smart00237   82 DETFYVRLS 90
Calx-beta pfam03160
Calx-beta domain;
3544-3632 2.62e-16

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 77.29  E-value: 2.62e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3544 GRFSFSHEQLHVSEAAQRVNVTVVRSGGSFGRA-RVLYETGSRTAEAGWDFVPASGELLFEAREKMKSLYIDILDDNLPE 3622
Cdd:pfam03160    2 GVIGFEPPTYQVSENDGVAEVCVVRMSGTLRRTvVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYE 81
                           90
                   ....*....|
gi 1039743050 3623 GPEEFVLAIT 3632
Cdd:pfam03160   82 GDENFFVLLS 91
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3528-3764 1.86e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.99  E-value: 1.86e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3528 ASVSARITMVASDAPYGRFSFSHEQLHVSEAAQRVNVTVVRSGGSFGR-ARVLYETGSRTAEAGWDFVPASGELLFEARE 3606
Cdd:TIGR00845  384 VSMHEVATDDEENDPVSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGE 463
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3607 KMKSLYIDILDDNLPEGPEEFVLAITRVDLQgrgydftiQENGLQIDQPPE----IGNISIVRIIIMKNDNAeGIIEFDP 3682
Cdd:TIGR00845  464 TQKEFRIGIIDDDIFEEDEHFYVRLSNLRVG--------SEDGILEANHVSavaqLASPNTATVTILDDDHA-GIFTFEE 534
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3683 KYTDISveEDAGVITLPVLRLHGTYGHVSADFSSRGFSAVPGG--YVLHGSSVTFQHGQNLSFINVSIIDDNGSEFEKQF 3760
Cdd:TIGR00845  535 DVFHVS--ESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGkdFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTF 612

                   ....
gi 1039743050 3761 EILL 3764
Cdd:TIGR00845  613 FIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1881-2065 2.41e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.61  E-value: 2.41e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1881 SVELVIYRTGGSLGQ-VMVEWRVVGGTATEGLDFMGAGDILTFAEGETKKMAILTILDDSEPEDNESILVRL----VATE 1955
Cdd:TIGR00845  417 TVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLsnlrVGSE 496
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1956 GGSRI---------LPSSDTVTVNILANDNvAGIVSFQTASRSVIGHEGEMlQFHVVRTPPGRGNVTVNWKVV---GQNL 2023
Cdd:TIGR00845  497 DGILEanhvsavaqLASPNTATVTILDDDH-AGIFTFEEDVFHVSESIGIM-EVKVLRTSGARGTVIVPYRTVegtARGG 574
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1039743050 2024 EVNFANFTGQLFFSEGTLNKTIFVHLLDDNIPEEKEVYQVVL 2065
Cdd:TIGR00845  575 GKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1005-1227 2.88e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.22  E-value: 2.88e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1005 HITVQEEDGEIRLLVIRAQGLLGR-VTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKVE 1083
Cdd:TIGR00845  408 HYTCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVR 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1084 LLNLDGGVSDLFRVDGSGSGEadtdfflppvlphASLGVASQILVTIAASDHAhGVFEFSPESLFVSgtepeDGYSTVVL 1163
Cdd:TIGR00845  488 LSNLRVGSEDGILEANHVSAV-------------AQLASPNTATVTILDDDHA-GIFTFEEDVFHVS-----ESIGIMEV 548
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 1164 NVTRTRGALSAVTLQ-WKVDSDLDG---DLAITSGNITFETGQRIASITVEILSDEEPELDKALTVSI 1227
Cdd:TIGR00845  549 KVLRTSGARGTVIVPyRTVEGTARGggkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1160-1354 5.08e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 79.45  E-value: 5.08e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1160 TVVLNVTRTRGALS-AVTLQWKVDsdlDG------DLAITSGNITFETGQRIASITVEILSDEEPELDKALTVSILNVSS 1232
Cdd:TIGR00845  417 TVALTVVRRGGDLTnTVYVDYRTE---DGtanagsDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRV 493
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1233 GS---------------LGVLTNATLTILaSDDPYGVFIFPNKTrpLSVEEATQNVTLSIIRLKGLMGEVAVSYATIDDM 1297
Cdd:TIGR00845  494 GSedgileanhvsavaqLASPNTATVTIL-DDDHAGIFTFEEDV--FHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGT 570
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 1298 ekppyfppnlarATQGG-DYISASGLALFRANQTEATITISILDDAEPERSESVFIEL 1354
Cdd:TIGR00845  571 ------------ARGGGkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
Calx-beta pfam03160
Calx-beta domain;
1004-1084 6.05e-14

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 70.36  E-value: 6.05e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1004 PHITVQEEDGEIRLLVIRAQGLLGR-VTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKV 1082
Cdd:pfam03160    9 PTYQVSENDGVAEVCVVRMSGTLRRtVVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFV 88

                   ..
gi 1039743050 1083 EL 1084
Cdd:pfam03160   89 LL 90
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1771-1951 1.62e-13

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 77.91  E-value: 1.62e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1771 GQAVAGSDYEPvTRQWAVILEGDEFANLTVSVLPDDAPEMDESFLISLLEVHL-----MNISDSFKNQPTIGHPNTSAVV 1845
Cdd:TIGR00845  442 GTANAGSDYEF-TEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVgsedgILEANHVSAVAQLASPNTATVT 520
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1846 IgLNGDAFGVFiiysvspnTSEDGLcVEVQEQPQTsVELVIYRTGGSLGQVMVEWRVVGGTATEGL-DFMGAGDILTFAE 1924
Cdd:TIGR00845  521 I-LDDDHAGIF--------TFEEDV-FHVSESIGI-MEVKVLRTSGARGTVIVPYRTVEGTARGGGkDFEDTCGELEFEN 589
                          170       180
                   ....*....|....*....|....*..
gi 1039743050 1925 GETKKMAILTILDDSEPEDNESILVRL 1951
Cdd:TIGR00845  590 DETEKTIRVKIVDDEEYEKNDTFFIEL 616
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1004-1085 1.04e-12

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 66.89  E-value: 1.04e-12
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  1004 PHITVQEEDGEIRLLVIRAQGLLGRVTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKVE 1083
Cdd:smart00237    9 PVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVR 88

                    ..
gi 1039743050  1084 LL 1085
Cdd:smart00237   89 LS 90
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3477-3631 1.10e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 75.21  E-value: 1.10e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3477 EFVETSGQLTMLDGQTAATVVIQALNDDIPEEKCHYEFQLTEISEGR---MLHEASVSAR---------ITMVASDAPYG 3544
Cdd:TIGR00845  449 DYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSedgILEANHVSAVaqlaspntaTVTILDDDHAG 528
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3545 RFSFSHEQLHVSEAAQRVNVTVVRSGGSFGRARVLYETGSRTAEAGW-DFVPASGELLFEAREKMKSLYIDILDDNLPEG 3623
Cdd:TIGR00845  529 IFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGkDFEDTCGELEFENDETEKTIRVKIVDDEEYEK 608

                   ....*...
gi 1039743050 3624 PEEFVLAI 3631
Cdd:TIGR00845  609 NDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2151-2351 1.33e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.83  E-value: 1.33e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2151 TEGNLAEPESDFIPVVGSLVLEEGETTAAISITVLEDDIPELKEYFLVNLTHV------DLIMAPLTSSPPRLDSEgLTA 2224
Cdd:TIGR00845  439 TEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLrvgsedGILEANHVSAVAQLASP-NTA 517
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2225 QIVIDANDGAqGMIEWQRNRFEVNETDGVVTLVAQRSRAALGQVSLFMYAQNLEAQAGL-DYMCTPQILHFTDGERFKHV 2303
Cdd:TIGR00845  518 TVTILDDDHA-GIFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGkDFEDTCGELEFENDETEKTI 596
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1039743050 2304 DVMILDDDMPEGDERFQLLLTNPSPGLELGKNTIALITVLANDDGPGV 2351
Cdd:TIGR00845  597 RVKIVDDEEYEKNDTFFIELGEPRWAKRGIKAALLLNETITDDDQKLT 644
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1404-1599 1.81e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.44  E-value: 1.81e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1404 HVAENHVGPIINVTRTGGTFAD-VSVKFKAVPITAAAGEDYSIASSDVVLLEGETTKAVPIYIINDIYPELEETFLVQLL 1482
Cdd:TIGR00845  410 TCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLS 489
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1483 N---ETTGGATLGPLREAVITIEA---------SDDPYGLFGFQNTKFIVEEpefNSVRVNVPIIRNSGTLGNVTVQWvA 1550
Cdd:TIGR00845  490 NlrvGSEDGILEANHVSAVAQLASpntatvtilDDDHAGIFTFEEDVFHVSE---SIGIMEVKVLRTSGARGTVIVPY-R 565
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1039743050 1551 IINGQfATG---DLRVVSGNVTFAPGETIQTLLLEVLADDVPEIEEVVQVQL 1599
Cdd:TIGR00845  566 TVEGT-ARGggkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
902-1084 2.63e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.06  E-value: 2.63e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  902 DFANASGTITFLPWQRSEVLNLYVLDEDMPELNEYFRVTL--VSAVPGDGKLGSTPISGASIDPEKETTGITVKASDHPy 979
Cdd:TIGR00845  449 DYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLsnLRVGSEDGILEANHVSAVAQLASPNTATVTILDDDHA- 527
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  980 GLMQFstglppqpEDSmslpassvpHITVQEEDGEIRLLVIRAQGLLGRVTVGFRTVSLTA-FSPEDYQSTAGTLEFQSG 1058
Cdd:TIGR00845  528 GIFTF--------EED---------VFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTArGGGKDFEDTCGELEFEND 590
                          170       180
                   ....*....|....*....|....*.
gi 1039743050 1059 ERYKYIFVNITDNSIPELEKSFKVEL 1084
Cdd:TIGR00845  591 ETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
281-484 2.64e-11

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 70.59  E-value: 2.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  281 NDDP--VYFaEPCVLRVQE--GETANFTVLRNGSVDGACTVQYATVDGKASGEEgDFAPVEKgeTLVFEVGSREQSISVH 356
Cdd:TIGR00845  396 NDPVskIFF-EPGHYTCLEncGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGS-DYEFTEG--TLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  357 VKDDGIPETDEPFYIVLFN---STGDTVVYEYG-----------VATVIIeANDDPNGVFSLE-PIDKAVEEGKTNAFWI 421
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLSNlrvGSEDGILEANHvsavaqlaspnTATVTI-LDDDHAGIFTFEeDVFHVSESIGIMEVKV 550
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039743050  422 LRHRGHFGNVSVAWQLFQNASLQPGQEFYETSGTVNFTDGEETKPVILRAFPDRIPEFNE-FYI 484
Cdd:TIGR00845  551 LRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDtFFI 614
7tm_2 pfam00002
7 transmembrane receptor (Secretin family); This family is known as Family B, the ...
5188-5422 4.87e-11

7 transmembrane receptor (Secretin family); This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognized. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97; calcium-independent receptors for latrotoxin, and brain-specific angiogenesis inhibitors amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins. Other than the typical seven-transmembrane region, characteriztic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling.


Pssm-ID: 459625 [Multi-domain]  Cd Length: 248  Bit Score: 66.53  E-value: 4.87e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5188 LICISGLCLavVSHMFCARHsmfaaKLLTHMMVASLGTQILFLA------SAYASPHLSEESCSAVAAVAHYLYLCQFSW 5261
Cdd:pfam00002   20 LLAIAIFLL--FRKLHCTRN-----YIHLNLFASFILRALLFLVgdavlfNKQDLDHCSWVGCKVVAVFLHYFFLANFFW 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5262 MLIQSVnFWYVLVVSDEHTERRCLL-FCLLSWGLPSFVVillililrGIYHRSMPQIYGliHGDLCFIpNIYAALFTAAL 5340
Cdd:pfam00002   93 MLVEGL-YLYTLLVEVFFSERKYFWwYLLIGWGVPALVV--------GIWAGVDPKGYG--EDDGCWL-SNENGLWWIIR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5341 VP-LMCLVVVFVVFIHAYQ-----LKPQWKG---YDDVFR-GRTNAAEIPL--ILYLFALISMTwlwgglHMAYRHFWML 5408
Cdd:pfam00002  161 GPiLLIILVNFIIFINIVRilvqkLRETNMGksdLKQYRRlAKSTLLLLPLlgITWVFGLFAFN------PENTLRVVFL 234
                          250
                   ....*....|....
gi 1039743050 5409 VLFVIFNSLQGLYV 5422
Cdd:pfam00002  235 YLFLILNSFQGFFV 248
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1879-1951 6.80e-11

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 61.50  E-value: 6.80e-11
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039743050  1879 QTSVELVIYRTGGSLGQVMVEWRVVGGTATEGLDFMGAGDILTFAEGETKKMAILTILDDSEPEDNESILVRL 1951
Cdd:smart00237   17 DGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRL 89
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
2245-2324 1.00e-10

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 61.12  E-value: 1.00e-10
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  2245 FEVNETDGVVTLVAQRSRAALGQVSLFMYAQNLEAQAGLDYMCTPQILHFTDGERFKHVDVMILDDDMPEGDERFQLLLT 2324
Cdd:smart00237   11 YTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRLS 90
Calx-beta pfam03160
Calx-beta domain;
2245-2324 1.35e-10

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 60.73  E-value: 1.35e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2245 FEVNETDGVVTLVAQRSRAALGQVSLFMYA-QNLEAQAGLDYMCTPQILHFTDGERFKHVDVMILDDDMPEGDERFQLLL 2323
Cdd:pfam03160   11 YQVSENDGVAEVCVVRMSGTLRRTVVVPYRtEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFVLL 90

                   .
gi 1039743050 2324 T 2324
Cdd:pfam03160   91 S 91
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2279-2450 4.44e-10

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 66.74  E-value: 4.44e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2279 AQAGLDYMCTPQILHFTDGERFKHVDVMILDDDMPEGDERFQLLLTNPSPGLE--------------LGKNTIALITVLa 2344
Cdd:TIGR00845  444 ANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEdgileanhvsavaqLASPNTATVTIL- 522
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2345 NDDGPGVLSFNNSghiflreptSLYVQESVAVLVIVREPAQGLFGTVAVQFVVTEVNSSTESKDLSPSKGFIVLEEGVRS 2424
Cdd:TIGR00845  523 DDDHAGIFTFEED---------VFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETE 593
                          170       180
                   ....*....|....*....|....*.
gi 1039743050 2425 KTLRISAILDTEPEMDEHFVCTLFNP 2450
Cdd:TIGR00845  594 KTIRVKIVDDEEYEKNDTFFIELGEP 619
Calx-beta pfam03160
Calx-beta domain;
4278-4370 5.28e-10

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 59.19  E-value: 5.28e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4278 GVFQFSPSsrNITVSEDAQTIRICVQRLFGFHGDLIKVSYETTAGSAKPPEDFEAVqKGEVFFQRFQPEIDFEITIINDQ 4357
Cdd:pfam03160    2 GVIGFEPP--TYQVSENDGVAEVCVVRMSGTLRRTVVVPYRTEDGTATAGDDYEPV-EGELVFGPGETEKCINVTIIDDD 78
                           90
                   ....*....|...
gi 1039743050 4358 LPEIEETFYINLT 4370
Cdd:pfam03160   79 VYEGDENFFVLLS 91
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
4277-4370 5.12e-09

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 56.49  E-value: 5.12e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  4277 MGVFQFSPSsrNITVSEDAQTIRICVQRlfgfHGDLIK---VSYETTAGSAKPPEDFEAVqKGEVFFQRFQPEIDFEITI 4353
Cdd:smart00237    1 AGSVGFEQP--VYTVSESDGEVEVCVVR----TGGARGpvvVPYSTEDGTATAGSDYEPV-PGELTFPPGETEKEIRIKI 73
                            90
                    ....*....|....*..
gi 1039743050  4354 INDQLPEIEETFYINLT 4370
Cdd:smart00237   74 IDDDIYEKDETFYVRLS 90
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2863-3019 8.32e-09

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 62.50  E-value: 8.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2863 SDFIPSLGELIFEPGDKEAIIAVNVLDDTVPEKEESFRVQLKSPRGGAEIGINSSVR--------------VTVLANDGA 2928
Cdd:TIGR00845  448 SDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHvsavaqlaspntatVTILDDDHA 527
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2929 yGVVAFAqnslHKQLEELERDSLVTLNVERLRGTHGRI-----TVAWEAAGSVSDVFPTSGVISFTEDQAMSMITLTVLA 3003
Cdd:TIGR00845  528 -GIFTFE----EDVFHVSESIGIMEVKVLRTSGARGTVivpyrTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVD 602
                          170
                   ....*....|....*.
gi 1039743050 3004 DDLPELSEAVVVTLTQ 3019
Cdd:TIGR00845  603 DEEYEKNDTFFIELGE 618
Calx-beta pfam03160
Calx-beta domain;
1880-1951 1.16e-08

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 55.33  E-value: 1.16e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039743050 1880 TSVELVIYRTGGSL-GQVMVEWRVVGGTATEGLDFMGAGDILTFAEGETKKMAILTILDDSEPEDNESILVRL 1951
Cdd:pfam03160   18 GVAEVCVVRMSGTLrRTVVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFVLL 90
Calx-beta pfam03160
Calx-beta domain;
1265-1354 1.22e-08

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 55.33  E-value: 1.22e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1265 SVEEATQNVTLSIIRLKG-LMGEVAVSYATIDDMekppyfppnlarATQGGDYISASGLALFRANQTEATITISILDDAE 1343
Cdd:pfam03160   12 QVSENDGVAEVCVVRMSGtLRRTVVVPYRTEDGT------------ATAGDDYEPVEGELVFGPGETEKCINVTIIDDDV 79
                           90
                   ....*....|.
gi 1039743050 1344 PERSESVFIEL 1354
Cdd:pfam03160   80 YEGDENFFVLL 90
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1265-1354 1.93e-08

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 54.57  E-value: 1.93e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  1265 SVEEATQNVTLSIIRLKGLMGEVAVSYATIDDmekppyfppnlaRATQGGDYISASGLALFRANQTEATITISILDDAEP 1344
Cdd:smart00237   12 TVSESDGEVEVCVVRTGGARGPVVVPYSTEDG------------TATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIY 79
                            90
                    ....*....|
gi 1039743050  1345 ERSESVFIEL 1354
Cdd:smart00237   80 EKDETFYVRL 89
Calx-beta pfam03160
Calx-beta domain;
284-373 1.95e-08

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 54.56  E-value: 1.95e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  284 PVYFAEPCVLRVQE--GETANFTVLRNGSVDGACTVQYATVDGKASGEEgDFAPVEkgETLVFEVGSREQSISVHVKDDG 361
Cdd:pfam03160    2 GVIGFEPPTYQVSEndGVAEVCVVRMSGTLRRTVVVPYRTEDGTATAGD-DYEPVE--GELVFGPGETEKCINVTIIDDD 78
                           90
                   ....*....|..
gi 1039743050  362 IPETDEPFYIVL 373
Cdd:pfam03160   79 VYEGDENFFVLL 90
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3071-3283 2.15e-07

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 57.88  E-value: 2.15e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3071 ENITVVQLHIVRDKGlfgDISIHLIAkpnfllhinNQATED------EDFVLQDSVIIMKENIKETHAEVAILPDEVPEL 3144
Cdd:TIGR00845  413 ENCGTVALTVVRRGG---DLTNTVYV---------DYRTEDgtanagSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEE 480
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3145 DEGLIVTIAAVNLVNPNFPAEQPRVQR------PRMESAEILieeNDDPRGIFNF-----HVVRDVGgviiahegpppln 3213
Cdd:TIGR00845  481 DEHFYVRLSNLRVGSEDGILEANHVSAvaqlasPNTATVTIL---DDDHAGIFTFeedvfHVSESIG------------- 544
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039743050 3214 VLQVPVVRMAGTFETVNVYWKATPDSA--GLEDFQPSHGMLQFADGQVIAPILVTIIDDSEFELLETFTISL 3283
Cdd:TIGR00845  545 IMEVKVLRTSGARGTVIVPYRTVEGTArgGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
285-373 2.15e-07

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 51.87  E-value: 2.15e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   285 VYFAEPcVLRVQEGE-TANFTVLRNGSVDGACTVQYATVDGKASGEEgDFAPVEKgeTLVFEVGSREQSISVHVKDDGIP 363
Cdd:smart00237    4 VGFEQP-VYTVSESDgEVEVCVVRTGGARGPVVVPYSTEDGTATAGS-DYEPVPG--ELTFPPGETEKEIRIKIIDDDIY 79
                            90
                    ....*....|
gi 1039743050   364 ETDEPFYIVL 373
Cdd:smart00237   80 EKDETFYVRL 89
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3214-3283 5.02e-07

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 50.72  E-value: 5.02e-07
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039743050  3214 VLQVPVVRMAGTFETVNVYWKATPDSA-GLEDFQPSHGMLQFADGQVIAPILVTIIDDSEFELLETFTISL 3283
Cdd:smart00237   19 EVEVCVVRTGGARGPVVVPYSTEDGTAtAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRL 89
LamGL smart00560
LamG-like jellyroll fold domain;
631-768 7.63e-07

LamG-like jellyroll fold domain;


Pssm-ID: 214722 [Multi-domain]  Cd Length: 133  Bit Score: 51.65  E-value: 7.63e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   631 FTFSAWVMPNANTNGFLIAKDdshgsiYYGVKIQTNETHVTLSLHYKTFGSNVTYIaksTVMKYLEEGVWLHVLIILD-- 708
Cdd:smart00560    3 FTLEAWVKLESAGGSQPIITG------AAVAQPTISEKALTFFLRAKSVQGWQTAR---TGATADWIGVWVHLAGVYDgg 73
                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039743050   709 DGIIEFYLDGkamprgikSLKGEAITDGPGI-------LRIGAGMDGGARFTGWMQDVRTYERKLTP 768
Cdd:smart00560   74 AGKLSLYVNG--------VEVATSETQPSPSsgnlpqgGRILLGGAGGENFSGRLDEVRVYNRALTA 132
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1394-1482 2.24e-06

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 48.79  E-value: 2.24e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  1394 GTVQLSATSVHVAENhVGPI-INVTRTGGTFADVSVKFKAVPITAAAGEDYSIASSDVVLLEGETTKAVPIYIINDIYPE 1472
Cdd:smart00237    2 GSVGFEQPVYTVSES-DGEVeVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYE 80
                            90
                    ....*....|
gi 1039743050  1473 LEETFLVQLL 1482
Cdd:smart00237   81 KDETFYVRLS 90
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
49-259 3.39e-06

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 54.03  E-value: 3.39e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   49 ENDDPGGIFefsYDSRGPYVIKEGDAVELRITRSRGSLVKQ-FLRFHVEPRESN---EFYGNMGVLEFTPGEREVVITLL 124
Cdd:TIGR00845  395 ENDPVSKIF---FEPGHYTCLENCGTVALTVVRRGGDLTNTvYVDYRTEDGTANagsDYEFTEGTLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  125 TRLDGTPELDEHFWVILSS-------------HGERESKLGCATLVNITILKNDYPhGIIEFVSDGLSASikeskgEDIY 191
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLSNlrvgsedgileanHVSAVAQLASPNTATVTILDDDHA-GIFTFEEDVFHVS------ESIG 544
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039743050  192 HAVYGVIRTRGNFGAVNVS-WMVSPDFT---QDVFPVQGTVCFGDQEFFKNITVYSLVDEIPEEMEEFTIIL 259
Cdd:TIGR00845  545 IMEVKVLRTSGARGTVIVPyRTVEGTARgggKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
Calx-beta pfam03160
Calx-beta domain;
1394-1481 3.58e-06

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 48.40  E-value: 3.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1394 GTVQLSATSVHVAENhVGPI-INVTRTGGTFA-DVSVKFKAVPITAAAGEDYSIASSDVVLLEGETTKAVPIYIIND-IY 1470
Cdd:pfam03160    2 GVIGFEPPTYQVSEN-DGVAeVCVVRMSGTLRrTVVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDdVY 80
                           90
                   ....*....|.
gi 1039743050 1471 pELEETFLVQL 1481
Cdd:pfam03160   81 -EGDENFFVLL 90
PTX cd00152
Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their ...
630-774 3.80e-06

Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.


Pssm-ID: 238086  Cd Length: 201  Bit Score: 51.12  E-value: 3.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  630 NFTFSAWVMPNANTNGFLIakddshgsIYYGVKIQTNEthvtLSLHYKTFGSNVTYIAKSTVMKYLEE--GVWLHVLIIL 707
Cdd:cd00152     32 AFTLCLWVYTDLSTREYSL--------FSYATKGQDNE----LLLYKEKDGGYSLYIGGKEVTFKVPEsdGAWHHICVTW 99
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039743050  708 D--DGIIEFYLDGKAMPRGIKSlKGEAITDGPGIL------RIGAGMDGGARFTGWMQDVRTYERKLTPEEIYEL 774
Cdd:cd00152    100 EstSGIAELWVNGKLSVRKSLK-KGYTVGPGGSIIlgqeqdSYGGGFDATQSFVGEISDVNMWDSVLSPEEIKNV 173
Calx-beta pfam03160
Calx-beta domain;
3214-3283 4.56e-06

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 48.01  E-value: 4.56e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039743050 3214 VLQVPVVRMAGTFE-TVNVYWKATPDSA-GLEDFQPSHGMLQFADGQVIAPILVTIIDDSEFELLETFTISL 3283
Cdd:pfam03160   19 VAEVCVVRMSGTLRrTVVVPYRTEDGTAtAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFVLL 90
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
2862-2903 4.65e-06

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 48.02  E-value: 4.65e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 1039743050  2862 QSDFIPSLGELIFEPGDKEAIIAVNVLDDTVPEKEESFRVQL 2903
Cdd:smart00237   48 GSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRL 89
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
4154-4369 5.97e-05

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 49.79  E-value: 5.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4154 VPEEAANSQVGFESAAFQLMDiKAGTSQVMVSRKGTYGR--LSVAWTT--GYA-PGSEipepivignMTPTLGSLSFVHG 4228
Cdd:TIGR00845  393 DEENDPVSKIFFEPGHYTCLE-NCGTVALTVVRRGGDLTntVYVDYRTedGTAnAGSD---------YEFTEGTLVFKPG 462
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4229 EERKGVLLWTFPSP--GRPEAFVLHLSGLRSSAAGG----------AQLRSGFT-TAEI---EPMGVFQFSpsSRNITVS 4292
Cdd:TIGR00845  463 ETQKEFRIGIIDDDifEEDEHFYVRLSNLRVGSEDGileanhvsavAQLASPNTaTVTIlddDHAGIFTFE--EDVFHVS 540
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 4293 EDAQTIRICVQRLFGFHGDLIkVSYETTAGSAKP-PEDFEAVQkGEVFFQRFQPEIDFEITIINDQLPEIEETFYINL 4369
Cdd:TIGR00845  541 ESIGIMEVKVLRTSGARGTVI-VPYRTVEGTARGgGKDFEDTC-GELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
EPTP pfam03736
EPTP domain; Mutations in the LGI/Epitempin gene can result in a special form of epilepsy, ...
2672-2713 9.67e-05

EPTP domain; Mutations in the LGI/Epitempin gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein contains a large repeat in its C terminal section. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold.


Pssm-ID: 461033  Cd Length: 41  Bit Score: 42.46  E-value: 9.67e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1039743050 2672 FAWHQTLPVRGVLGMALFSRGGSVFLAISQANIRqtSLLFTW 2713
Cdd:pfam03736    2 FVPYQTIPTRGARDVEPFSIGGDLFLAVANFSGD--SVIYRW 41
Calx-beta pfam03160
Calx-beta domain;
2863-2903 1.23e-04

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 43.78  E-value: 1.23e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1039743050 2863 SDFIPSLGELIFEPGDKEAIIAVNVLDDTVPEKEESFRVQL 2903
Cdd:pfam03160   50 DDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFVLL 90
Calx-beta pfam03160
Calx-beta domain;
3676-3764 2.60e-04

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 43.01  E-value: 2.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3676 GIIEFDPkyTDISVEEDAGVITLPVLRLHGTY-GHVSADFSSRGFSAVPGG-YVLHGSSVTFQHGQNLSFINVSIIDDNG 3753
Cdd:pfam03160    2 GVIGFEP--PTYQVSENDGVAEVCVVRMSGTLrRTVVVPYRTEDGTATAGDdYEPVEGELVFGPGETEKCINVTIIDDDV 79
                           90
                   ....*....|.
gi 1039743050 3754 SEFEKQFEILL 3764
Cdd:pfam03160   80 YEGDENFFVLL 90
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3676-3764 2.93e-04

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 43.01  E-value: 2.93e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  3676 GIIEFD-PKYTdisVEEDAGVITLPVLRLHGTYGHVSADFSSRGFSAVPGG-YVLHGSSVTFQHGQNLSFINVSIIDDNG 3753
Cdd:smart00237    2 GSVGFEqPVYT---VSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSdYEPVPGELTFPPGETEKEIRIKIIDDDI 78
                            90
                    ....*....|.
gi 1039743050  3754 SEFEKQFEILL 3764
Cdd:smart00237   79 YEKDETFYVRL 89
GPS smart00303
G-protein-coupled receptor proteolytic site domain; Present in latrophilin/CL-1, sea urchin ...
5126-5172 6.10e-04

G-protein-coupled receptor proteolytic site domain; Present in latrophilin/CL-1, sea urchin REJ and polycystin.


Pssm-ID: 197639  Cd Length: 49  Bit Score: 40.83  E-value: 6.10e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 1039743050  5126 HTSRCLLWNQAAASWlsDSQFCKVVEDASDYVECACSHMSVYAVYAQ 5172
Cdd:smart00303    1 FNPICVFWDESSGEW--STRGCELLETNGTHTTCSCNHLTTFAVLMD 45
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
862-941 7.40e-04

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 41.86  E-value: 7.40e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   862 TEEGSTVSCVVERTRGALGYVHV-FYTISQIESEGinylvDDFANASGTITFLPWQRSEVLNLYVLDEDMPELNEYFRVT 940
Cdd:smart00237   14 SESDGEVEVCVVRTGGARGPVVVpYSTEDGTATAG-----SDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVR 88

                    .
gi 1039743050   941 L 941
Cdd:smart00237   89 L 89
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
4282-4403 7.50e-04

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 46.32  E-value: 7.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4282 FSPSSrnITVSEDAQTIRICVQRLFGFHGDLIKVSYETTAGSAKPPEDFEAVqKGEVFFQRFQPEIDFEITIINDQLPEI 4361
Cdd:TIGR00845  404 FEPGH--YTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFT-EGTLVFKPGETQKEFRIGIIDDDIFEE 480
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039743050 4362 EETFYINLTSVETRG----LGKGGVNWRPRL-NPDLsvAVVTIVDND 4403
Cdd:TIGR00845  481 DEHFYVRLSNLRVGSedgiLEANHVSAVAQLaSPNT--ATVTILDDD 525
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3671-3897 1.03e-03

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 45.94  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3671 NDNAEGIIeFDP-KYTdisVEEDAGVITLPVLRLHGTYG-HVSADFSSRGFSAVPGG-YVLHGSSVTFQHGQNLSFINVS 3747
Cdd:TIGR00845  396 NDPVSKIF-FEPgHYT---CLENCGTVALTVVRRGGDLTnTVYVDYRTEDGTANAGSdYEFTEGTLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3748 IIDDNGSEFEKQFEILL--------------IGATGGAILGRHLVSKITIAKSDSPfGIIRFlNQSKISLPNPSSTMALH 3813
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLsnlrvgsedgileaNHVSAVAQLASPNTATVTILDDDHA-GIFTF-EEDVFHVSESIGIMEVK 549
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3814 LVleRTGGLLGEIQVSWEVVGPDAEEplppHNGDFADpVSGTVSFGDGEgGVRSIILRVCPHEETEAEETFIVQLKPLRE 3893
Cdd:TIGR00845  550 VL--RTSGARGTVIVPYRTVEGTARG----GGKDFED-TCGELEFENDE-TEKTIRVKIVDDEEYEKNDTFFIELGEPRW 621

                   ....
gi 1039743050 3894 AKLD 3897
Cdd:TIGR00845  622 AKRG 625
Calx-beta pfam03160
Calx-beta domain;
849-941 1.07e-03

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 41.08  E-value: 1.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  849 GLFGFTGACIPEMTEEGSTVSCVVeRTRGAL-GYVHV-FYTISQIESEGinylvDDFANASGTITFLPWQRSEVLNLYVL 926
Cdd:pfam03160    2 GVIGFEPPTYQVSENDGVAEVCVV-RMSGTLrRTVVVpYRTEDGTATAG-----DDYEPVEGELVFGPGETEKCINVTII 75
                           90
                   ....*....|....*
gi 1039743050  927 DEDMPELNEYFRVTL 941
Cdd:pfam03160   76 DDDVYEGDENFFVLL 90
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3310-3401 2.91e-03

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 39.93  E-value: 2.91e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  3310 GIFGFEKKTVMV---DGPllsddpdsyVTLTVVRSPGGKGAVRLHWAIEE---KAKDDLSPLNGTLYFDETESQKSVILH 3383
Cdd:smart00237    2 GSVGFEQPVYTVsesDGE---------VEVCVVRTGGARGPVVVPYSTEDgtaTAGSDYEPVPGELTFPPGETEKEIRIK 72
                            90
                    ....*....|....*...
gi 1039743050  3384 TLKDGMVGEDRRFIIELT 3401
Cdd:smart00237   73 IIDDDIYEKDETFYVRLS 90
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
2364-2447 8.28e-03

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 38.77  E-value: 8.28e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  2364 EPTSLYVQES--VAVLVIVREpaQGLFGTVAVQFVvTEVNSSTESKDLSPSKGFIVLEEGVRSKTLRISAILDTEPEMDE 2441
Cdd:smart00237    7 EQPVYTVSESdgEVEVCVVRT--GGARGPVVVPYS-TEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDE 83

                    ....*.
gi 1039743050  2442 HFVCTL 2447
Cdd:smart00237   84 TFYVRL 89
 
Name Accession Description Interval E-value
7tmB2_Adhesion cd15040
adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G ...
5193-5433 3.71e-30

adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G protein-coupled receptors; The B2 subfamily of class B GPCRs consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320168 [Multi-domain]  Cd Length: 253  Bit Score: 122.68  E-value: 3.71e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5193 GLCLAVVSHMFCAR-HSMFAAKLLTHMMVASLGTQILFLASAyaSPHLSEESCSAVAAVAHYLYLCQFSWMLIQSVNFWY 5271
Cdd:cd15040     18 GLLLTIITYILFRKlRKRKPTKILLNLCLALLLANLLFLFGI--NSTDNPVLCTAVAALLHYFLLASFMWMLVEALLLYL 95
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5272 VLV-VSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHRSmpqiyglihGDLCFIPNIYAALFtAALVPLMCLVVV- 5349
Cdd:cd15040     96 RLVkVFGTYPRHFILKYALIGWGLPLIIVIITLAVDPDSYGNS---------SGYCWLSNGNGLYY-AFLGPVLLIILVn 165
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5350 FVVFI----HAYQLKPQwkgyDDVFRGRTNAAEIPLILYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQGLYVFVV 5425
Cdd:cd15040    166 LVIFVlvlrKLLRLSAK----RNKKKRKKTKAQLRAAVSLFFLLGLTWIFGILAIFGARVVFQYLFAIFNSLQGFFIFIF 241

                   ....*...
gi 1039743050 5426 YFILHNQT 5433
Cdd:cd15040    242 HCLRNKEV 249
7tm_classB cd13952
class B family of seven-transmembrane G protein-coupled receptors; The class B of ...
5185-5426 1.51e-27

class B family of seven-transmembrane G protein-coupled receptors; The class B of seven-transmembrane GPCRs is classified into three major subfamilies: subfamily B1 (secretin-like receptor family), B2 (adhesion family), and B3 (Methuselah-like family). The class B receptors have been identified in all the vertebrates, from fishes to mammals, as well as invertebrates including Caenorhabditis elegans and Drosophila melanogaster, but are not present in plants, fungi or prokaryotes. The B1 subfamily comprises receptors for polypeptide hormones of 27-141 amino-acid residues such as secretin, glucagon, glucagon-like peptide (GLP), calcitonin gene-related peptide, parathyroid hormone (PTH), and corticotropin-releasing factor. These receptors contain the large N-terminal extracellular domain (ECD), which plays a critical role in hormone recognition by binding to the C-terminal portion of the peptide. On the other hand, the N-terminal segment of the hormone induces receptor activation by interacting with the receptor transmembrane domains and connecting extracellular loops, triggering intracellular signaling pathways. All members of the subfamily B1 receptors preferentially couple to G proteins of G(s) family, which positively stimulate adenylate cyclase, leading to increased intracellular cAMP formation and calcium influx. The subfamily B2 consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. Furthermore, the subfamily B3 includes Methuselah (Mth) protein, which was originally identified in Drosophila as a GPCR affecting stress resistance and aging, and its closely related proteins.


Pssm-ID: 410627 [Multi-domain]  Cd Length: 260  Bit Score: 115.00  E-value: 1.51e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5185 SAGLICIS--GLCLAVVSHMF-----CARHsmfaaKLLTHMMVASLGTQILFLASAYASPHLSEESCSAVAAVAHYLYLC 5257
Cdd:cd13952      8 TYIGCSLSlvGLLLTIITYLLfpklrNLRG-----KILINLCLSLLLAQLLFLIGQLLTSSDRPVLCKALAILLHYFLLA 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5258 QFSWMLIQSVNFWYVLV-VSDEHTERRCLLFCLLSWGLPSFVVILLililrGIYHRSMPQIYGLIHGDLCFIPNIYAALF 5336
Cdd:cd13952     83 SFFWMLVEAFDLYRTFVkVFGSSERRRFLKYSLYGWGLPLLIVIIT-----AIVDFSLYGPSPGYGGEYCWLSNGNALLW 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5337 tAALVPLMCLVVV-FVVFIH-AYQLKPQWKGYDDVFRGRTNAAEIPLILYLFALISMTWLWGGL-HMAYRHFWMLVLFVI 5413
Cdd:cd13952    158 -AFYGPVLLILLVnLVFFILtVRILLRKLRETPKQSERKSDRKQLRAYLKLFPLMGLTWIFGILaPFVGGSLVFWYLFDI 236
                          250
                   ....*....|...
gi 1039743050 5414 FNSLQGLYVFVVY 5426
Cdd:cd13952    237 LNSLQGFFIFLIF 249
7tmB2_GPR112 cd15997
Probable G protein-coupled receptor 112, member of the class B2 family of seven-transmembrane ...
5191-5438 2.16e-20

Probable G protein-coupled receptor 112, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR112 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include orphan GPCRs such as GPR56, GPR64, GPR97, GPR114, and GPR126. GPR112 is specifically expressed in normal enterochromatin cells and gastrointestinal neuroendocrine carcinoma cells, but its biological function is unknown. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320663  Cd Length: 269  Bit Score: 94.73  E-value: 2.16e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5191 ISGLCLAVVSHMFCARHSM---FAAKLLTHMMVASLGTQILFLASAYASPHLSEESCSAVAAVAHYLYLCQFSWMLIQSV 5267
Cdd:cd15997     14 ISSIFLGITLVTYLAFEKLrrdYPSKILINLCTALLMLNLVFLLNSWLSSFNNYGLCITVAAFLHYFLLASFTWMGLEAV 93
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5268 NFWYVLV-VSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHRSMPQIYGLIHGDLCFIPNI---YAALFTAALVPL 5343
Cdd:cd15997     94 HMYFALVkVFNIYIPNYILKFCIAGWGIPAVVVALVLAINKDFYGNELSSDSLHPSTPFCWIQDDvvfYISVVAYFCLIF 173
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5344 MCLVVVFVVF---IHAYQLKPQWKGYDDVFrgrtnaaeiplILYLFALISMTWL----WGGLHMAY--RHFWMLVLFVIF 5414
Cdd:cd15997    174 LCNISMFITVliqIRSMKAKKPSRNWKQGF-----------LHDLKSVASLTFLlgltWGFAFFAWgpVRIFFLYLFSIC 242
                          250       260
                   ....*....|....*....|....
gi 1039743050 5415 NSLQGLYVFVVYfilhnqtcCPMK 5438
Cdd:cd15997    243 NTLQGFFIFVFH--------CLMK 258
7tmB2_GPR126-like_Adhesion_VIII cd15258
orphan GPR126 and related proteins, group VIII adhesion GPCRs, member of the class B2 family ...
5210-5429 1.12e-18

orphan GPR126 and related proteins, group VIII adhesion GPCRs, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Group VIII adhesion GPCRs include orphan GPCRs such as GPR56, GPR64, GPR97, GPR112, GPR114, and GPR126. GPR56 is involved in the regulation of oligodendrocyte development and myelination in the central nervous system via coupling to G(12/13) proteins, which leads to the activation of RhoA GTPase. GPR126, on the other hand, is required for Schwann cells, but not oligodendrocyte myelination in the peripheral nervous system. Gpr64 is mainly expressed in the epididymis of male reproductive tract, and targeted deletion of GPR64 causes sperm stasis and efferent duct blockage due to abnormal fluid reabsorption, resulting in male infertility. GPR64 is also over-expressed in Ewing's sarcoma (ES), as well as upregulated in other carcinomas from kidney, prostate or lung, and promotes invasiveness and metastasis in ES via the upregulation of placental growth factor (PGF) and matrix metalloproteinase (MMP) 1. GPR97 is identified as a lymphatic adhesion receptor that is specifically expressed in lymphatic endothelium, but not in blood vascular endothelium, and is shown to regulate migration of lymphatic endothelial cells via the small GTPases RhoA and cdc42. GPR112 is specifically expressed in normal enterochromatin cells and gastrointestinal neuroendocrine carcinoma cells, but its biological function is unknown. GPR114 is mainly found in granulocytes (polymorphonuclear leukocytes), and GPR114-transfected cells induced an increase in cAMP levels via coupling to G(s) protein. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320386 [Multi-domain]  Cd Length: 267  Bit Score: 89.40  E-value: 1.12e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5210 FAAKLLTHMMVASLGTQILFLASAYASPHLSEESCSAVAAVAHYLYLCQFSWMLIQSVNFWYVLV-VSDEHTERRCLLFC 5288
Cdd:cd15258     36 YPSKIHMNLCAALLLLNLAFLLSSWIASFGSDGLCIAVAVALHYFLLACLTWMGLEAFHLYLLLVkVFNTYIRRYILKLC 115
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5289 LLSWGLPSFVVILLILILRGIYHR-SMPQIYGLIHGDLCFIPNIYAALFTAA----LVPLMCLVVVFVVFIHAYQLKPQw 5363
Cdd:cd15258    116 LVGWGLPALLVTLVLSVRSDNYGPiTIPNGEGFQNDSFCWIRDPVVFYITVVgyfgLTFLFNMVMLATVLVQICRLREK- 194
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039743050 5364 kgyDDVFRGRTNAAEIPLILYLFALISMTW-----LWGGLHMAYrhfwmLVLFVIFNSLQGLYVFVVYFIL 5429
Cdd:cd15258    195 ---AQATPRKRALHDLLTLLGLTFLLGLTWglaffAWGPFNLPF-----LYLFAIFNSLQGFFIFIWYCSM 257
Laminin_G_3 pfam13385
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ...
622-771 1.77e-17

Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.


Pssm-ID: 463865 [Multi-domain]  Cd Length: 151  Bit Score: 82.43  E-value: 1.77e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  622 PFRNNTIANFTFSAWVMPNANTNGF-LIAKDDSHGSIYYGVKiQTNETHVTLslhYKTFGSNVTYIAKSTVmkylEEGVW 700
Cdd:pfam13385   10 PDALLPTSDFTVSAWVKPDSLPGWArAIISSSGGGGYSLGLD-GDGRLRFAV---NGGNGGWDTVTSGASV----PLGQW 81
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039743050  701 LHVLIILDDGIIEFYLDGKAMPRGikSLKGEAITDGPGILRIGAGMDGGARFTGWMQDVRTYERKLTPEEI 771
Cdd:pfam13385   82 THVAVTYDGGTLRLYVNGVLVGSS--TLTGGPPPGTGGPLYIGRSPGGDDYFNGLIDEVRIYDRALSAAEI 150
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3544-3632 4.79e-17

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 79.22  E-value: 4.79e-17
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  3544 GRFSFSHEQLHVSEAAQRVNVTVVRSGGSFGRARVLYETGSRTAEAGWDFVPASGELLFEAREKMKSLYIDILDDNLPEG 3623
Cdd:smart00237    2 GSVGFEQPVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEK 81

                    ....*....
gi 1039743050  3624 PEEFVLAIT 3632
Cdd:smart00237   82 DETFYVRLS 90
7tmB3_Methuselah-like cd15039
Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G ...
5184-5426 5.60e-17

Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G protein-coupled receptors; The subfamily B3 of class B GPCRs consists of Methuselah (Mth) and its closely related proteins found in bilateria. Mth was originally identified in Drosophila as a GPCR affecting stress resistance and aging. In addition to the seven transmembrane helices, Mth contains an N-terminal extracellular domain involved in ligand binding, and a third intracellular loop (IC3) required for the specificity of G-protein coupling. Drosophila Mth mutants showed an increase in average lifespan by 35% and greater resistance to a variety of stress factors, including starvation, high temperature, and paraquat-induced oxidative toxicity. Moreover, mutations in two endogenous peptide ligands of Methuselah, Stunted A and B, showed an increased in lifespan and resistance to oxidative stress induced by dietary paraquat. These results strongly suggest that the Stunted-Methuselah system plays important roles in stress response and aging.


Pssm-ID: 410632 [Multi-domain]  Cd Length: 270  Bit Score: 84.58  E-value: 5.60e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5184 FSAGLICISGLCLAVVshmFCArHSMFAA------KLLTHMMVASLGTQILFLASAYaSPHLSEESCSAVAAVAHYLYLC 5257
Cdd:cd15039      7 LTLIGLIISLVFLLLT---LAV-YALLPElrnlhgKCLMCLVLSLFVAYLLLLIGQL-LSSGDSTLCVALGILLHFFFLA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5258 QFSWMLIQSVNFWYVL-----VVSDEHTERRCLLFCLLSWGLPS--FVVILLILILRGIYHrSMPQIYGLIhgdlCFIPN 5330
Cdd:cd15039     82 AFFWLNVMSFDIWRTFrgkrsSSSRSKERKRFLRYSLYAWGVPLllVAVTIIVDFSPNTDS-LRPGYGEGS----CWISN 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5331 IYAALFTAAlVPLMCLVVV-FVVFIH-AYQL-KPQWKGYDDVFRGRTNAAEIPLILYLFALISMTWLWGGLHMAYRHF-W 5406
Cdd:cd15039    157 PWALLLYFY-GPVALLLLFnIILFILtAIRIrKVKKETAKVQSRLRSDKQRFRLYLKLFVIMGVTWILEIISWFVGGSsV 235
                          250       260
                   ....*....|....*....|
gi 1039743050 5407 MLVLFVIFNSLQGLYVFVVY 5426
Cdd:cd15039    236 LWYIFDILNGLQGVFIFLIF 255
Calx-beta pfam03160
Calx-beta domain;
3544-3632 2.62e-16

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 77.29  E-value: 2.62e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3544 GRFSFSHEQLHVSEAAQRVNVTVVRSGGSFGRA-RVLYETGSRTAEAGWDFVPASGELLFEAREKMKSLYIDILDDNLPE 3622
Cdd:pfam03160    2 GVIGFEPPTYQVSENDGVAEVCVVRMSGTLRRTvVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYE 81
                           90
                   ....*....|
gi 1039743050 3623 GPEEFVLAIT 3632
Cdd:pfam03160   82 GDENFFVLLS 91
7tmB2_GPR126 cd15996
orphan adhesion receptor GPR126, member of the class B2 family of seven-transmembrane G ...
5191-5438 4.09e-16

orphan adhesion receptor GPR126, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR126 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include orphan GPCRs such as GPR56, GPR64, GPR97, GPR112, and GPR114. GPR126 is required in Schwann cells for proper differentiation and myelination via G-Protein Activation. GPR126 is believed to couple to G(s)-protein, which leads to activation of adenylate cyclase for cAMP production. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320662  Cd Length: 271  Bit Score: 82.24  E-value: 4.09e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5191 ISGLCLAVVSHMFCARHSM---FAAKLLTHMMVASLGTQILFLASAYASPHLSEESCSAVAAVAHYLYLCQFSWMLIQSV 5267
Cdd:cd15996     14 ISAIFSAATLLTYIAFEKLrrdYPSKILMNLSTALLFLNLVFLLDGWIASFEIDELCITVAVLLHFFLLATFTWMGLEAI 93
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5268 NFWYVLV-VSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHR-SMPQIYGLIHGD-LCFIPNIYAALFTAA----L 5340
Cdd:cd15996     94 HMYIALVkVFNTYIRRYILKFCIIGWGLPALIVSIVLASTNDNYGYgYYGKDKDGQGGDeFCWIKNPVVFYVTCAayfgI 173
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5341 VPLMCLVVVFVVFIhayqlkpQWKGYDDVFRGRTNAAEI----PLILYLFALISMTW-----LWGGLHMAYrhfwmLVLF 5411
Cdd:cd15996    174 MFLMNVAMFIVVMV-------QICGRNGKRSNRTLREEIlrnlRSVVSLTFLLGMTWgfaffAWGPVNLAF-----MYLF 241
                          250       260
                   ....*....|....*....|....*..
gi 1039743050 5412 VIFNSLQGLYVFVVYfilhnqtcCPMK 5438
Cdd:cd15996    242 TIFNSLQGLFIFVFH--------CALK 260
7tmB2_CELSR_Adhesion_IV cd15441
cadherin EGF LAG seven-pass G-type receptors, group IV adhesion GPCRs, member of the class B2 ...
5188-5429 1.97e-15

cadherin EGF LAG seven-pass G-type receptors, group IV adhesion GPCRs, member of the class B2 family of seven-transmembrane G protein-coupled receptors; The group IV adhesion GPCRs include the cadherin EGF LAG seven-pass G-type receptors (CELSRs) and their Drosophila homolog Flamingo (also known as Starry night). These receptors are also classified as that belongs to the EGF-TM7 group of subfamily B2 adhesion GPCRs, because they contain EGF-like domains. Functionally, the group IV receptors act as key regulators of many physiological processes such as endocrine cell differentiation, neuronal migration, dendrite growth, axon, guidance, lymphatic vessel and valve formation, and planar cell polarity (PCP) during embryonic development. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. In the case of CELSR/Flamingo/Starry night, their extracellular domains comprise nine cadherin repeats linked to a series of epidermal growth factor (EGF)-like and laminin globular (G)-like domains. The cadherin repeats contain sequence motifs that mediate calcium-dependent cell-cell adhesion by homophilic interactions. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. Three mammalian orthologs of Flamingo, Celsr1-3, are widely expressed in the nervous system from embryonic development until the adult stage. Each Celsr exhibits different expression patterns in the developing brain, suggesting that they serve distinct functions. Mutations of CELSR1 cause neural tube defects in the nervous system, while mutations of CELSR2 are associated with coronary heart disease. Moreover, CELSR1 and several other PCP signaling molecules, such as dishevelled, prickle, frizzled, have been shown to be upregulated in B lymphocytes of chronic lymphocytic leukemia patients. Celsr3 is expressed in both the developing and adult mouse brain. It has been functionally implicated in proper neuron migration and axon guidance in the CNS.


Pssm-ID: 320557 [Multi-domain]  Cd Length: 254  Bit Score: 79.60  E-value: 1.97e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5188 LICISGLCLAVVSHMFCARHSmfaakLLTHMMVASLGTQILFLASAYASPhlSEESCSAVAAVAHYLYLCQFSWMLIQSV 5267
Cdd:cd15441     18 LLVIAFLVLSCLRGLQSNSNS-----IHKNLVACLLLAELLFLLGINQTE--NLFPCKLIAILLHYFYLSAFSWLLVESL 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5268 NFwYVLVVSDEHTERRCLLFC-LLSWGLPSFVVILLIlilrGIYhrsmPQIYGliHGDLCFIpNIYAALFTAALVPLMCL 5346
Cdd:cd15441     91 HL-YRMLTEPRDINHGHMRFYyLLGYGIPAIIVGLSV----GLR----PDGYG--NPDFCWL-SVNETLIWSFAGPIAFV 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5347 VVV-FVVFIHAY----QLKPQWKGYDDVFRGrtnaaeIPLILYLFALISMTWLWGGL----HMAYRHFwmlvLFVIFNSL 5417
Cdd:cd15441    159 IVItLIIFILALrascTLKRHVLEKASVRTD------LRSSFLLLPLLGATWVFGLLavneDSELLHY----LFAGLNFL 228
                          250
                   ....*....|..
gi 1039743050 5418 QGLYVFVVYFIL 5429
Cdd:cd15441    229 QGLFIFLFYCIF 240
7tmB2_GPR114 cd15443
orphan adhesion receptor GPR114, member of the class B2 family of seven-transmembrane G ...
5217-5433 3.74e-15

orphan adhesion receptor GPR114, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR114 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include GPR56, GPR64, GPR97, GPR112, and GPR126. GPR114 is mainly found in granulocytes (polymorphonuclear leukocytes), and GPR114-transfected cells induced an increase in cAMP levels via coupling to G(s) protein. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320559 [Multi-domain]  Cd Length: 268  Bit Score: 79.03  E-value: 3.74e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5217 HM--MVASLGTQILFLAS-AYASPHlSEESCSAVAAVAHYLYLCQFSWMLIQSVNFWYVLV-VSDEHTERRCLLFCLLSW 5292
Cdd:cd15443     41 HMnlLGSLFLLNGSFLLSpPLATSQ-STWLCRAAAALLHYSLLCCLTWMAIEGFHLYLLLVkVYNIYIRRYVLKLCVLGW 119
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5293 GLPSFVVILLILILRGIY-HRSMPQIYGLIHGDLCFI--PNIYAALFT--AALVPLMCLVVVFVVFIHAYQLKPQwkgyD 5367
Cdd:cd15443    120 GLPALIVLLVLIFKREAYgPHTIPTGTGYQNASMCWItsSKVHYVLVLgyAGLTSLFNLVVLAWVVRMLRRLRSR----K 195
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039743050 5368 DVFRGRTnAAEIPLILYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQGLYVFVVYFILHNQT 5433
Cdd:cd15443    196 QELGERA-RRDWVTVLGLTCLLGTTWALAFFSFGVFLIPQLFLFTIINSLYGFFICLWYCTQRRRS 260
7tmB2_GPR133-like_Adhesion_V cd15933
orphan GPR133 and related proteins, group V adhesion GPCRs, member of class B2 family of ...
5220-5429 1.69e-14

orphan GPR133 and related proteins, group V adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; group V adhesion GPCRs include orphan receptors GPR133, GPR144, and closely related proteins. The function of GPR144 has not yet been characterized, whereas GPR133 is highly expressed in the pituitary gland and is coupled to the G(s) protein, leading to activation of adenylate cyclase pathway. Moreover, genetic variations in the GPR133 have been reported to be associated with adult height and heart rate. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in ligand recognition as well as cell-cell adhesion and cell-matrix interactions, linked by a stalk region to a class B seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. However, several adhesion GPCRs, including GPR 111, GPR115, and CELSR1, are predicted to be non-cleavable at the GAIN domain because of the lack of a consensus catalytic triad sequence (His-Leu-Ser/Thr) within their GPS.


Pssm-ID: 320599 [Multi-domain]  Cd Length: 252  Bit Score: 76.98  E-value: 1.69e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5220 VASLGTQILFLASAYASPHlsEESCSAVAAVAHYLYLCQFSWMLIQSVNFWYVLV-VSDEHTERRclLFCLLSWGLPSFV 5298
Cdd:cd15933     45 VALLLAQILLLAGEWAEGN--KVACKVVAILLHFFFMAAFSWMLVEGLHLYLMIVkVFNYKSKMR--YYYFIGWGLPAII 120
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5299 VillililrGIYHRSMPQIYGL-------IHGDLcfipnIYA----ALF--TAALVPLMCLVVVFVVF--IHAYQLKPQW 5363
Cdd:cd15933    121 V--------AISLAILFDDYGSpnvcwlsLDDGL-----IWAfvgpVIFiiTVNTVILILVVKITVSLstNDAKKSQGTL 187
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039743050 5364 KGYDDVFRGrtnaaeiplILYLFALISMTWLWG-------GLHMAYrhfwmlvLFVIFNSLQGLYVFVVYFIL 5429
Cdd:cd15933    188 AQIKSTAKA---------SVVLLPILGLTWLFGvlvvnsqTIVFQY-------IFVILNSLQGLMIFLFHCVL 244
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3528-3764 1.86e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.99  E-value: 1.86e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3528 ASVSARITMVASDAPYGRFSFSHEQLHVSEAAQRVNVTVVRSGGSFGR-ARVLYETGSRTAEAGWDFVPASGELLFEARE 3606
Cdd:TIGR00845  384 VSMHEVATDDEENDPVSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGE 463
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3607 KMKSLYIDILDDNLPEGPEEFVLAITRVDLQgrgydftiQENGLQIDQPPE----IGNISIVRIIIMKNDNAeGIIEFDP 3682
Cdd:TIGR00845  464 TQKEFRIGIIDDDIFEEDEHFYVRLSNLRVG--------SEDGILEANHVSavaqLASPNTATVTILDDDHA-GIFTFEE 534
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3683 KYTDISveEDAGVITLPVLRLHGTYGHVSADFSSRGFSAVPGG--YVLHGSSVTFQHGQNLSFINVSIIDDNGSEFEKQF 3760
Cdd:TIGR00845  535 DVFHVS--ESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGkdFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTF 612

                   ....
gi 1039743050 3761 EILL 3764
Cdd:TIGR00845  613 FIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1881-2065 2.41e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.61  E-value: 2.41e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1881 SVELVIYRTGGSLGQ-VMVEWRVVGGTATEGLDFMGAGDILTFAEGETKKMAILTILDDSEPEDNESILVRL----VATE 1955
Cdd:TIGR00845  417 TVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLsnlrVGSE 496
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1956 GGSRI---------LPSSDTVTVNILANDNvAGIVSFQTASRSVIGHEGEMlQFHVVRTPPGRGNVTVNWKVV---GQNL 2023
Cdd:TIGR00845  497 DGILEanhvsavaqLASPNTATVTILDDDH-AGIFTFEEDVFHVSESIGIM-EVKVLRTSGARGTVIVPYRTVegtARGG 574
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1039743050 2024 EVNFANFTGQLFFSEGTLNKTIFVHLLDDNIPEEKEVYQVVL 2065
Cdd:TIGR00845  575 GKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1005-1227 2.88e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 80.22  E-value: 2.88e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1005 HITVQEEDGEIRLLVIRAQGLLGR-VTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKVE 1083
Cdd:TIGR00845  408 HYTCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVR 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1084 LLNLDGGVSDLFRVDGSGSGEadtdfflppvlphASLGVASQILVTIAASDHAhGVFEFSPESLFVSgtepeDGYSTVVL 1163
Cdd:TIGR00845  488 LSNLRVGSEDGILEANHVSAV-------------AQLASPNTATVTILDDDHA-GIFTFEEDVFHVS-----ESIGIMEV 548
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 1164 NVTRTRGALSAVTLQ-WKVDSDLDG---DLAITSGNITFETGQRIASITVEILSDEEPELDKALTVSI 1227
Cdd:TIGR00845  549 KVLRTSGARGTVIVPyRTVEGTARGggkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1160-1354 5.08e-14

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 79.45  E-value: 5.08e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1160 TVVLNVTRTRGALS-AVTLQWKVDsdlDG------DLAITSGNITFETGQRIASITVEILSDEEPELDKALTVSILNVSS 1232
Cdd:TIGR00845  417 TVALTVVRRGGDLTnTVYVDYRTE---DGtanagsDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRV 493
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1233 GS---------------LGVLTNATLTILaSDDPYGVFIFPNKTrpLSVEEATQNVTLSIIRLKGLMGEVAVSYATIDDM 1297
Cdd:TIGR00845  494 GSedgileanhvsavaqLASPNTATVTIL-DDDHAGIFTFEEDV--FHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGT 570
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 1298 ekppyfppnlarATQGG-DYISASGLALFRANQTEATITISILDDAEPERSESVFIEL 1354
Cdd:TIGR00845  571 ------------ARGGGkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
Calx-beta pfam03160
Calx-beta domain;
1004-1084 6.05e-14

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 70.36  E-value: 6.05e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1004 PHITVQEEDGEIRLLVIRAQGLLGR-VTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKV 1082
Cdd:pfam03160    9 PTYQVSENDGVAEVCVVRMSGTLRRtVVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFV 88

                   ..
gi 1039743050 1083 EL 1084
Cdd:pfam03160   89 LL 90
7tmB2_Latrophilin_Adhesion_I cd15252
Latrophilins and similar receptors, group I adhesion GPCRs, member of class B2 family of ...
5189-5429 8.43e-14

Latrophilins and similar receptors, group I adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; Group I adhesion GPCRs consist of latrophilins (also called lectomedins or latrotoxin receptors) and ETL (EGF-TM7-latrophilin-related protein. These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320380 [Multi-domain]  Cd Length: 257  Bit Score: 74.85  E-value: 8.43e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5189 ICISGLCLAVVSHMFCARHSMFAAKLLTH--MMVASLGTQILFLASAYASPHlsEESCSAVAAVAHYLYLCQFSWMLIQS 5266
Cdd:cd15252     12 IIISLVCLAICIFTFWFFRGLQSDRTTIHknLCISLFLAELVFLIGINTTTN--KIFCSVIAGLLHYFFLAAFAWMFIEG 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5267 VNFWYVLVVSDEHTERRCLLFCLLSWGLPSFVVILLIlilrGIYHRSmpqiYGLihGDLCFIPN----IYAALFTAALVP 5342
Cdd:cd15252     90 IQLYLMLVEVFENEGSRHKNFYIFGYGSPAVIVGVSA----ALGYRY----YGT--TKVCWLSTenyfIWSFIGPATLII 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5343 LMCL----VVVFVVFIHAYQLKPQWKGYDDvfrgrTNAAEIPLILYLFaLISMTWLWGGLHMAYRHFWMLVLFVIFNSLQ 5418
Cdd:cd15252    160 LLNLiflgVAIYKMFRHTAGLKPEVSCLEN-----IRSWARGAIALLF-LLGLTWIFGVLHINHASVVMAYLFTVSNSLQ 233
                          250
                   ....*....|.
gi 1039743050 5419 GLYVFVVYFIL 5429
Cdd:cd15252    234 GMFIFLFHCVL 244
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1771-1951 1.62e-13

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 77.91  E-value: 1.62e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1771 GQAVAGSDYEPvTRQWAVILEGDEFANLTVSVLPDDAPEMDESFLISLLEVHL-----MNISDSFKNQPTIGHPNTSAVV 1845
Cdd:TIGR00845  442 GTANAGSDYEF-TEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVgsedgILEANHVSAVAQLASPNTATVT 520
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1846 IgLNGDAFGVFiiysvspnTSEDGLcVEVQEQPQTsVELVIYRTGGSLGQVMVEWRVVGGTATEGL-DFMGAGDILTFAE 1924
Cdd:TIGR00845  521 I-LDDDHAGIF--------TFEEDV-FHVSESIGI-MEVKVLRTSGARGTVIVPYRTVEGTARGGGkDFEDTCGELEFEN 589
                          170       180
                   ....*....|....*....|....*..
gi 1039743050 1925 GETKKMAILTILDDSEPEDNESILVRL 1951
Cdd:TIGR00845  590 DETEKTIRVKIVDDEEYEKNDTFFIEL 616
7tmB2_GPR64 cd15444
orphan adhesion receptor GPR64 and related proteins, member of subfamily B2 of the class B ...
5210-5426 3.19e-13

orphan adhesion receptor GPR64 and related proteins, member of subfamily B2 of the class B secretin-like receptors of seven-transmembrane G protein-coupled receptors; GPR64 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include orphan GPCRs such as GPR56, GPR97, GPR112, GPR114, and GPR126. GPR64 is mainly expressed in the epididymis of male reproductive tract, and targeted deletion of GPR64 causes sperm stasis and efferent duct blockage due to abnormal fluid reabsorption, resulting in male infertility. GPR64 is also over-expressed in Ewing's sarcoma (ES), as well as upregulated in other carcinomas from kidney, prostate or lung, and promotes invasiveness and metastasis in ES via the upregulation of placental growth factor (PGF) and matrix metalloproteinase (MMP) 1. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320560 [Multi-domain]  Cd Length: 271  Bit Score: 73.32  E-value: 3.19e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5210 FAAKLLTHMMVASLGTQILFLASAYASPHLSEES-CSAVAAVAHYLYLCQFSWMLIQSVNFWYVLV-VSDEHTERRCLLF 5287
Cdd:cd15444     36 YPSKILIQLCVALLLLNLVFLLDSWIALYKDIVGlCISVAVFLHYFLLVSFTWMGLEAFHMYLALVkVFNTYIRKYILKF 115
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5288 CLLSWGLPSFVVILLILILrgiyhrsmPQIYGLIH---------GDLCFIPNiyAALFTAALVPLMCLVVVF------VV 5352
Cdd:cd15444    116 CIVGWGVPAVVVAIVLAVS--------KDNYGLGSygkspngstDDFCWINN--NIVFYITVVGYFCVIFLLnismfiVV 185
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039743050 5353 FIHAYQLKPQwKGYDdvFRGRTNAAEIPLILYLFALISMTW-----LWGGLHMAYrhfwmLVLFVIFNSLQGLYVFVVY 5426
Cdd:cd15444    186 LVQLCRIKKQ-KQLG--AQRKTSLQDLRSVAGITFLLGITWgfaffAWGPVNLAF-----MYLFAIFNTLQGFFIFIFY 256
7tmB2_latrophilin-like_invertebrate cd15440
invertebrate latrophilin-like receptors, member of the class B2 family of seven-transmembrane ...
5190-5432 4.57e-13

invertebrate latrophilin-like receptors, member of the class B2 family of seven-transmembrane G protein-coupled receptors; This subgroup includes latrophilin-like proteins that are found in invertebrates such as insects and worms. Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of vertebrate latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320556 [Multi-domain]  Cd Length: 259  Bit Score: 72.68  E-value: 4.57e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5190 CISGLCLAVVSHMFCARHSMFAAKLLTHM-MVASLG-TQILFLASAYASPHLSEesCSAVAAVAHYLYLCQFSWMLIQSV 5267
Cdd:cd15440     13 IISIVCLLLAFITFTCFRNLQCDRNTIHKnLCLCLLiAEIVFLLGIDQTENRTL--CGVIAGLLHYFFLAAFSWMLLEGF 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5268 NFWYVLVVSDEHTERRCLLFCLLSWGLPSFVVILLIlilrGIYHRSmpqiYGLihGDLCFI----PNIYAALFTAALVPL 5343
Cdd:cd15440     91 QLYVMLVEVFEPEKSRIKWYYLFGYGLPALIVAVSA----GVDPTG----YGT--EDHCWLstenGFIWSFVGPVIVVLL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5344 MCLVV----VFVVFIHAYQLkPQWKgydDVFRGRTNAAEIPLILYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQG 5419
Cdd:cd15440    161 ANLVFlgmaIYVMCRHSSRS-ASKK---DASKLKNIRGWLKGSIVLVVLLGLTWTFGLLFINQESIVMAYIFTILNSLQG 236
                          250
                   ....*....|...
gi 1039743050 5420 LYVFVVYFILHNQ 5432
Cdd:cd15440    237 LFIFIFHCVLNEK 249
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1004-1085 1.04e-12

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 66.89  E-value: 1.04e-12
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  1004 PHITVQEEDGEIRLLVIRAQGLLGRVTVGFRTVSLTAFSPEDYQSTAGTLEFQSGERYKYIFVNITDNSIPELEKSFKVE 1083
Cdd:smart00237    9 PVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVR 88

                    ..
gi 1039743050  1084 LL 1085
Cdd:smart00237   89 LS 90
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3477-3631 1.10e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 75.21  E-value: 1.10e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3477 EFVETSGQLTMLDGQTAATVVIQALNDDIPEEKCHYEFQLTEISEGR---MLHEASVSAR---------ITMVASDAPYG 3544
Cdd:TIGR00845  449 DYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSedgILEANHVSAVaqlaspntaTVTILDDDHAG 528
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3545 RFSFSHEQLHVSEAAQRVNVTVVRSGGSFGRARVLYETGSRTAEAGW-DFVPASGELLFEAREKMKSLYIDILDDNLPEG 3623
Cdd:TIGR00845  529 IFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGkDFEDTCGELEFENDETEKTIRVKIVDDEEYEK 608

                   ....*...
gi 1039743050 3624 PEEFVLAI 3631
Cdd:TIGR00845  609 NDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1249-1481 1.23e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 75.21  E-value: 1.23e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1249 DDPYGVFIFPNKtrpLSVEEATQNVTLSIIRLKGLMGE-VAVSYATIDdmekppyfppnlARATQGGDYISASGLALFRA 1327
Cdd:TIGR00845  397 DPVSKIFFEPGH---YTCLENCGTVALTVVRRGGDLTNtVYVDYRTED------------GTANAGSDYEFTEGTLVFKP 461
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1328 NQTEATITISILDDAEPERSESVFIELFNSSLVDKVQNRPIPHSPRLGPKVETVAHLVIVANDDAFGTVQLSATSVHVAE 1407
Cdd:TIGR00845  462 GETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILDDDHAGIFTFEEDVFHVSE 541
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039743050 1408 NhVGPI-INVTRTGGTFADVSVKFKAVPITAAAG-EDYSIASSDVVLLEGETTKAVPIYIINDIYPELEETFLVQL 1481
Cdd:TIGR00845  542 S-IGIMeVKVLRTSGARGTVIVPYRTVEGTARGGgKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2151-2351 1.33e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.83  E-value: 1.33e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2151 TEGNLAEPESDFIPVVGSLVLEEGETTAAISITVLEDDIPELKEYFLVNLTHV------DLIMAPLTSSPPRLDSEgLTA 2224
Cdd:TIGR00845  439 TEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLrvgsedGILEANHVSAVAQLASP-NTA 517
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2225 QIVIDANDGAqGMIEWQRNRFEVNETDGVVTLVAQRSRAALGQVSLFMYAQNLEAQAGL-DYMCTPQILHFTDGERFKHV 2303
Cdd:TIGR00845  518 TVTILDDDHA-GIFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGkDFEDTCGELEFENDETEKTI 596
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1039743050 2304 DVMILDDDMPEGDERFQLLLTNPSPGLELGKNTIALITVLANDDGPGV 2351
Cdd:TIGR00845  597 RVKIVDDEEYEKNDTFFIELGEPRWAKRGIKAALLLNETITDDDQKLT 644
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
1404-1599 1.81e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.44  E-value: 1.81e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1404 HVAENHVGPIINVTRTGGTFAD-VSVKFKAVPITAAAGEDYSIASSDVVLLEGETTKAVPIYIINDIYPELEETFLVQLL 1482
Cdd:TIGR00845  410 TCLENCGTVALTVVRRGGDLTNtVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLS 489
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1483 N---ETTGGATLGPLREAVITIEA---------SDDPYGLFGFQNTKFIVEEpefNSVRVNVPIIRNSGTLGNVTVQWvA 1550
Cdd:TIGR00845  490 NlrvGSEDGILEANHVSAVAQLASpntatvtilDDDHAGIFTFEEDVFHVSE---SIGIMEVKVLRTSGARGTVIVPY-R 565
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1039743050 1551 IINGQfATG---DLRVVSGNVTFAPGETIQTLLLEVLADDVPEIEEVVQVQL 1599
Cdd:TIGR00845  566 TVEGT-ARGggkDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
902-1084 2.63e-12

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 74.06  E-value: 2.63e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  902 DFANASGTITFLPWQRSEVLNLYVLDEDMPELNEYFRVTL--VSAVPGDGKLGSTPISGASIDPEKETTGITVKASDHPy 979
Cdd:TIGR00845  449 DYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLsnLRVGSEDGILEANHVSAVAQLASPNTATVTILDDDHA- 527
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  980 GLMQFstglppqpEDSmslpassvpHITVQEEDGEIRLLVIRAQGLLGRVTVGFRTVSLTA-FSPEDYQSTAGTLEFQSG 1058
Cdd:TIGR00845  528 GIFTF--------EED---------VFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTArGGGKDFEDTCGELEFEND 590
                          170       180
                   ....*....|....*....|....*.
gi 1039743050 1059 ERYKYIFVNITDNSIPELEKSFKVEL 1084
Cdd:TIGR00845  591 ETEKTIRVKIVDDEEYEKNDTFFIEL 616
7tmB2_Latrophilin-3 cd16005
Latrophilin-3, member of the class B2 family of seven-transmembrane G protein-coupled ...
5189-5432 1.43e-11

Latrophilin-3, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320671 [Multi-domain]  Cd Length: 258  Bit Score: 68.43  E-value: 1.43e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5189 ICISGLCLAVVSHMFCARHSMFAAKLLTH--MMVASLGTQILFLASAYASPHlsEESCSAVAAVAHYLYLCQFSWMLIQS 5266
Cdd:cd16005     12 ILLSLVCLLICIFTFCFFRGLQSDRNTIHknLCISLFVAELLFLIGINRTDQ--PIACAVFAALLHFFFLAAFTWMFLEG 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5267 VNFWYVL--VVSDEHTERRclLFCLLSWGLPSFVVILLIlilrGIYHRSmpqiYGL-----IHGDLCFIPN-IYAALFTA 5338
Cdd:cd16005     90 VQLYIMLveVFESEHSRRK--YFYLVGYGMPALIVAVSA----AVDYRS----YGTdkvcwLRLDTYFIWSfIGPATLII 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5339 ALVPLMCLVVVFVVFIHAYQLKPQwKGYDDVFRGRTNAAeipliLYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQ 5418
Cdd:cd16005    160 MLNVIFLGIALYKMFHHTAILKPE-SGCLDNIKSWVIGA-----IALLCLLGLTWAFGLMYINESTVIMAYLFTIFNSLQ 233
                          250
                   ....*....|....
gi 1039743050 5419 GLYVFVVYFILHNQ 5432
Cdd:cd16005    234 GMFIFIFHCVLQKK 247
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
281-484 2.64e-11

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 70.59  E-value: 2.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  281 NDDP--VYFaEPCVLRVQE--GETANFTVLRNGSVDGACTVQYATVDGKASGEEgDFAPVEKgeTLVFEVGSREQSISVH 356
Cdd:TIGR00845  396 NDPVskIFF-EPGHYTCLEncGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGS-DYEFTEG--TLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  357 VKDDGIPETDEPFYIVLFN---STGDTVVYEYG-----------VATVIIeANDDPNGVFSLE-PIDKAVEEGKTNAFWI 421
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLSNlrvGSEDGILEANHvsavaqlaspnTATVTI-LDDDHAGIFTFEeDVFHVSESIGIMEVKV 550
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039743050  422 LRHRGHFGNVSVAWQLFQNASLQPGQEFYETSGTVNFTDGEETKPVILRAFPDRIPEFNE-FYI 484
Cdd:TIGR00845  551 LRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDtFFI 614
7tmB2_Latrophilin-1 cd16007
Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled ...
5189-5432 3.43e-11

Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320673 [Multi-domain]  Cd Length: 258  Bit Score: 67.25  E-value: 3.43e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5189 ICISGLCLAVVSHMFCARHSMFAAKLLTH--MMVASLGTQILFLASAYASPHlsEESCSAVAAVAHYLYLCQFSWMLIQS 5266
Cdd:cd16007     12 IVISLVCLAICISTFCFLRGLQTDRNTIHknLCINLFLAELLFLIGIDKTQY--QIACPIFAGLLHFFFLAAFSWLCLEG 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5267 VNFWYVLVVSDEHTERRCLLFCLLSWGLPSFVVILLIlilrGIYHRSmpqiYGLIHGDLCFIPNIYAALFTAalvPLMCL 5346
Cdd:cd16007     90 VQLYLMLVEVFESEYSRKKYYYLCGYCFPALVVGISA----AIDYRS----YGTEKACWLRVDNYFIWSFIG---PVSFV 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5347 VVVFVVFI---------HAYQLKPQWKGYDDVfrgrtNAAEIPLILYLFaLISMTWLWGGLHMAYRHFWMLVLFVIFNSL 5417
Cdd:cd16007    159 IVVNLVFLmvtlhkmirSSSVLKPDSSRLDNI-----KSWALGAITLLF-LLGLTWAFGLLFINKESVVMAYLFTTFNAF 232
                          250
                   ....*....|....*
gi 1039743050 5418 QGLYVFVVYFILHNQ 5432
Cdd:cd16007    233 QGMFIFIFHCALQKK 247
7tm_2 pfam00002
7 transmembrane receptor (Secretin family); This family is known as Family B, the ...
5188-5422 4.87e-11

7 transmembrane receptor (Secretin family); This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognized. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97; calcium-independent receptors for latrotoxin, and brain-specific angiogenesis inhibitors amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins. Other than the typical seven-transmembrane region, characteriztic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling.


Pssm-ID: 459625 [Multi-domain]  Cd Length: 248  Bit Score: 66.53  E-value: 4.87e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5188 LICISGLCLavVSHMFCARHsmfaaKLLTHMMVASLGTQILFLA------SAYASPHLSEESCSAVAAVAHYLYLCQFSW 5261
Cdd:pfam00002   20 LLAIAIFLL--FRKLHCTRN-----YIHLNLFASFILRALLFLVgdavlfNKQDLDHCSWVGCKVVAVFLHYFFLANFFW 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5262 MLIQSVnFWYVLVVSDEHTERRCLL-FCLLSWGLPSFVVillililrGIYHRSMPQIYGliHGDLCFIpNIYAALFTAAL 5340
Cdd:pfam00002   93 MLVEGL-YLYTLLVEVFFSERKYFWwYLLIGWGVPALVV--------GIWAGVDPKGYG--EDDGCWL-SNENGLWWIIR 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5341 VP-LMCLVVVFVVFIHAYQ-----LKPQWKG---YDDVFR-GRTNAAEIPL--ILYLFALISMTwlwgglHMAYRHFWML 5408
Cdd:pfam00002  161 GPiLLIILVNFIIFINIVRilvqkLRETNMGksdLKQYRRlAKSTLLLLPLlgITWVFGLFAFN------PENTLRVVFL 234
                          250
                   ....*....|....
gi 1039743050 5409 VLFVIFNSLQGLYV 5422
Cdd:pfam00002  235 YLFLILNSFQGFFV 248
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1879-1951 6.80e-11

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 61.50  E-value: 6.80e-11
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039743050  1879 QTSVELVIYRTGGSLGQVMVEWRVVGGTATEGLDFMGAGDILTFAEGETKKMAILTILDDSEPEDNESILVRL 1951
Cdd:smart00237   17 DGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRL 89
7tmB2_CD97 cd15438
CD97 antigen, member of the class B2 family of seven-transmembrane G protein-coupled receptors; ...
5185-5432 7.72e-11

CD97 antigen, member of the class B2 family of seven-transmembrane G protein-coupled receptors; group II adhesion GPCRs, including the leukocyte cell-surface antigen CD97 and the epidermal growth factor (EGF)-module-containing, mucin-like hormone receptor (EMR1-4), are primarily expressed in cells of the immune system. All EGF-TM7 receptors, which belong to the B2 subfamily B2 of adhesion GPCRs, are members of group II, except for ETL (EGF-TM7-latrophilin related protein), which is classified into group I. Members of the EGF-TM7 receptors are characterized by the presence of varying numbers of N-terminal EGF-like domains, which play critical roles in ligand recognition and cell adhesion, linked by a stalk region to a class B seven-transmembrane domain. In the case of CD97, alternative splicing results in three isoforms possessing either three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. For example, CD97, which is involved in angiogenesis and the migration and invasion of tumor cells, has been shown to promote cell aggregation in a GPS proteolysis-dependent manner. CD97 is widely expressed on lymphocytes, monocytes, macrophages, dendritic cells, granulocytes and smooth muscle cells as well as in a variety of human tumors including colorectal, gastric, esophageal pancreatic, and thyroid carcinoma. EMR2 shares strong sequence homology with CD97, differing by only six amino acids. However, unlike CD97, EMR2 is not found in those of CD97-positive tumor cells and is not expressed on lymphocytes but instead on monocytes, macrophages and granulocytes. CD97 has three known ligands: CD55, decay-accelerating factor for regulation of complement system; chondroitin sulfate, a glycosaminoglycan found in the extracellular matrix; and the integrin alpha5beta1, which play a role in angiogenesis. Although EMR2 does not effectively interact with CD55, the fourth EGF-like domain of this receptor binds to chondroitin sulfate to mediate cell attachment.


Pssm-ID: 320554 [Multi-domain]  Cd Length: 261  Bit Score: 66.32  E-value: 7.72e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5185 SAGLICisgLCLAVVSHMFCARHSMFAAKLLTHMMVASLGTQILFLASAyaSPHLSEESCSAVAAVAHYLYLCQFSWMLI 5264
Cdd:cd15438     13 SVSLFC---LFLCILTFLFCRSIRGTRNTIHLHLCLSLFLAHLIFLLGI--NNTNNQVACAVVAGLLHYFFLAAFCWMSL 87
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5265 QSVNFWYVLV-VSDEHTERRcLLFCLLSWGLPSFVVillililrGIYHRSMPQIYGL-IHGDLCFIPNIYAALFTAALVP 5342
Cdd:cd15438     88 EGVELYLMVVqVFNTQSLKK-RYLLLIGYGVPLVIV--------AISAAVNSKGYGTqRHCWLSLERGFLWSFLGPVCLI 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5343 LMCLVVVFVVFIHAY-----QLKPQWKGYDdvfrgRTNAAEIPLILYLFALiSMTWLWGGLHMAYRHFWMLVLFVIFNSL 5417
Cdd:cd15438    159 ILVNAIIFVITVWKLaekfsSINPDMEKLR-----KIRALTITAIAQLCIL-GCTWIFGFFQFSDSTLVMSYLFTILNSL 232
                          250
                   ....*....|....*
gi 1039743050 5418 QGLYVFVVYFILHNQ 5432
Cdd:cd15438    233 QGLFIFLLHCLLSKQ 247
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
2245-2324 1.00e-10

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 61.12  E-value: 1.00e-10
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  2245 FEVNETDGVVTLVAQRSRAALGQVSLFMYAQNLEAQAGLDYMCTPQILHFTDGERFKHVDVMILDDDMPEGDERFQLLLT 2324
Cdd:smart00237   11 YTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRLS 90
7tmB2_GPR97 cd15442
orphan adhesion receptor GPR97, member of the class B2 family of seven-transmembrane G ...
5229-5430 1.08e-10

orphan adhesion receptor GPR97, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR97 is an orphan receptor that has been classified into the group VIII of adhesion GPCRs. Other members of the Group VII include GPR56, GPR64, GPR112, GPR114, and GPR126. GPR97 is identified as a lymphatic adhesion receptor that is specifically expressed in lymphatic endothelium, but not in blood vascular endothelium, and is shown to regulate migration of lymphatic endothelial cells via the small GTPases RhoA and cdc42. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320558 [Multi-domain]  Cd Length: 277  Bit Score: 65.98  E-value: 1.08e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5229 FLASAYASPHLSEESCSAVAAVAHYLYLCQFSWMLIQSVNFwYVLVVSDEHTERRCLL--FCLLSWGLPSFVVILL-ILI 5305
Cdd:cd15442     59 FLLNSGVSSRAHPGLCKALGGVTHYFLLCCFTWMAIEAFHL-YLLAIKVFNTYIHHYFakLCLVGWGFPALVVTITgSIN 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5306 LRGIY------HRSmpqiygliHGDLCFIPN--IYAALFTA----ALVPLMCLVVVFVVFIHAYQLKPQWKGyddvfRGR 5373
Cdd:cd15442    138 SYGAYtimdmaNRT--------TLHLCWINSkhLTVHYITVcgyfGLTFLFNTVVLGLVAWKIFHLQSATAG-----KEK 204
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 5374 TNAAEIPL-ILYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQGLYVFVVYFILH 5430
Cdd:cd15442    205 CQAWKGGLtVLGLSCLLGVTWGLAFFTYGSMSVPTVYIFALLNSLQGLFIFIWFVILY 262
7tmB2_ETL cd15437
Epidermal Growth Factor, latrophilin and seven transmembrane domain-containing protein 1; ...
5189-5429 1.23e-10

Epidermal Growth Factor, latrophilin and seven transmembrane domain-containing protein 1; member of the class B2 family of seven-transmembrane G protein-coupled receptors; ETL (EGF-TM7-latrophilin-related protein) belongs to Group I adhesion GPCRs, which also include latrophilins (also called lectomedins or latrotoxin receptors). All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. ETL, for instance, contains EGF-like repeats, which also present in other EGF-TM7 adhesion GPCRs, such as Cadherin EGF LAG seven-pass G-type receptors (CELSR1-3), EGF-like module receptors (EMR1-3), CD97, and Flamingo. ETL is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320553 [Multi-domain]  Cd Length: 258  Bit Score: 65.67  E-value: 1.23e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5189 ICISGLCLAVVSHMFCARHSMFAAKLLTH--MMVASLGTQILFLASAYASPHlsEESCSAVAAVAHYLYLCQFSWMLIQS 5266
Cdd:cd15437     12 IIISLICLSMCIFTFWFFSEIQSTRTTIHknLCCSLFLAELIFLIGINMNAN--KLFCSIIAGLLHYFFLAAFAWMCIEG 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5267 VNFwYVLVVSDEHTerRCLL---FCLLSWGLPSFVVillililrGIYHRSMPQIYGLihGDLCFIPN----IYAALFTAA 5339
Cdd:cd15437     90 IHL-YLIVVGVIYN--KGFLhknFYIFGYGSPAVVV--------GISAALGYKYYGT--TKVCWLSTennfIWSFIGPAC 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5340 LVPLMCL----VVVFVVFIHAYQLKPQWKGYDDVfRGRTNAAeipliLYLFALISMTWLWGGLHMAYRHFWMLVLFVIFN 5415
Cdd:cd15437    157 LIILVNLlafgVIIYKVFRHTAMLKPEVSCYENI-RSCARGA-----LALLFLLGATWIFGVLHVVYGSVVTAYLFTISN 230
                          250
                   ....*....|....
gi 1039743050 5416 SLQGLYVFVVYFIL 5429
Cdd:cd15437    231 AFQGMFIFIFLCVL 244
Calx-beta pfam03160
Calx-beta domain;
2245-2324 1.35e-10

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 60.73  E-value: 1.35e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2245 FEVNETDGVVTLVAQRSRAALGQVSLFMYA-QNLEAQAGLDYMCTPQILHFTDGERFKHVDVMILDDDMPEGDERFQLLL 2323
Cdd:pfam03160   11 YQVSENDGVAEVCVVRMSGTLRRTVVVPYRtEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFVLL 90

                   .
gi 1039743050 2324 T 2324
Cdd:pfam03160   91 S 91
7tmB2_CELSR1 cd15991
Cadherin EGF LAG seven-pass G-type receptor 1, member of the class B2 family of ...
5244-5442 2.94e-10

Cadherin EGF LAG seven-pass G-type receptor 1, member of the class B2 family of seven-transmembrane G protein-coupled receptors; The group IV adhesion GPCRs include the cadherin EGF LAG seven-pass G-type receptors (CELSRs) and their Drosophila homolog Flamingo (also known as Starry night). These receptors are also classified as that belongs to the EGF-TM7 group of subfamily B2 adhesion GPCRs, because they contain EGF-like domains. Functionally, the group IV receptors act as key regulators of many physiological processes such as endocrine cell differentiation, neuronal migration, dendrite growth, axon, guidance, lymphatic vessel and valve formation, and planar cell polarity (PCP) during embryonic development. Three mammalian orthologs of Flamingo, Celsr1-3, are widely expressed in the nervous system from embryonic development until the adult stage. Each Celsr exhibits different expression patterns in the developing brain, suggesting that they serve distinct functions. Mutations of CELSR1 cause neural tube defects in the nervous system, while mutations of CELSR2 are associated with coronary heart disease. Moreover, CELSR1 and several other PCP signaling molecules, such as dishevelled, prickle, frizzled, have been shown to be upregulated in B lymphocytes of chronic lymphocytic leukemia patients. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. In the case of CELSR/Flamingo/Starry night, their extracellular domains comprise nine cadherin repeats linked to a series of epidermal growth factor (EGF)-like and laminin globular (G)-like domains. The cadherin repeats contain sequence motifs that mediate calcium-dependent cell-cell adhesion by homophilic interactions. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320657 [Multi-domain]  Cd Length: 254  Bit Score: 64.48  E-value: 2.94e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5244 CSAVAAVAHYLYLCQFSWMLIQSVNFWYVLVVSDEHTERRCLLFCLLSWGLPSFVVillililrGIYHRSMPQIYGliHG 5323
Cdd:cd15991     67 CTVVAILLHYFYMSTFAWMFVEGLHIYRMLTEVRNINTGHMRFYYVVGWGIPAIIT--------GLAVGLDPQGYG--NP 136
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5324 DLCFIpNIYAALFTAALVPLMCLVVV-FVVFIHAYQLKPQWKGYDDVFRGRTNAAEIPLILYLfaLISMTWLWGGLHMAY 5402
Cdd:cd15991    137 DFCWL-SVQDTLIWSFAGPIGIVVIInTVIFVLAAKASCGRRQRYFEKSGVISMLRTAFLLLL--LISATWLLGLMAVNS 213
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1039743050 5403 RHFWMLVLFVIFNSLQGLYVFVVYFILHNQTCCPMKASYT 5442
Cdd:cd15991    214 DTLSFHYLFAIFSCLQGIFIFFFHCIFNKEVRKHLKNVLT 253
7tmB2_GPR144 cd15255
orphan adhesion receptor GPR114, member of the class B2 family of seven-transmembrane G ...
5217-5428 3.47e-10

orphan adhesion receptor GPR114, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR144 is an orphan receptor that belongs to the group V adhesion-GPCRs together with GPR133. The function of GPR144 has not yet been characterized, whereas GPR133 is highly expressed in the pituitary gland and is coupled to the Gs protein, leading to activation of adenylyl cyclase pathway. Moreover, genetic variations in the GPR133 have been reported to be associated with adult height and heart rate. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in ligand recognition as well as cell-cell adhesion and cell-matrix interactions, linked by a stalk region to a class B seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. However, several adhesion GPCRs, including GPR 111, GPR115, and CELSR1, are predicted to be non-cleavable at the GAIN domain because of the lack of a consensus catalytic triad sequence (His-Leu-Ser/Thr) within their GPS.


Pssm-ID: 320383 [Multi-domain]  Cd Length: 263  Bit Score: 64.10  E-value: 3.47e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5217 HMMVASLGTQILFLASAYASPhlSEESCSAVAAVAHYLYLCQFSWMLIQSVNFWYVLVVSDEHTERRCLLFCLLSWGLPS 5296
Cdd:cd15255     42 NLIFALAAAEFLLMFSEWAKG--NQVACWAVTALLHLFFLAAFSWMLVEGLLLWSKVVAVNMSEDRRMKFYYVTGWGLPV 119
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5297 FVVILLILILRGIYhRSMPQIYGLIHGDLCFI---PNIYAALFTAALVPLMCLVVVFVVFIHAYQLKPQwKGYDDVFRGR 5373
Cdd:cd15255    120 VIVAVTLATSFNKY-VADQHCWLNVQTDIIWAfvgPVLFVLTVNTFVLFRVVMVTVSSARRRAKMLTPS-SDLEKQIGIQ 197
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039743050 5374 TNAAEIPlILYLFALISMTWLWGGL-HMAYRhfwMLVLFVIFNSLQGLYVFVVYFI 5428
Cdd:cd15255    198 IWATAKP-VLVLLPVLGLTWLCGVLvHLSDV---WAYVFITLNSFQGLYIFLVYAI 249
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2279-2450 4.44e-10

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 66.74  E-value: 4.44e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2279 AQAGLDYMCTPQILHFTDGERFKHVDVMILDDDMPEGDERFQLLLTNPSPGLE--------------LGKNTIALITVLa 2344
Cdd:TIGR00845  444 ANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEdgileanhvsavaqLASPNTATVTIL- 522
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2345 NDDGPGVLSFNNSghiflreptSLYVQESVAVLVIVREPAQGLFGTVAVQFVVTEVNSSTESKDLSPSKGFIVLEEGVRS 2424
Cdd:TIGR00845  523 DDDHAGIFTFEED---------VFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETE 593
                          170       180
                   ....*....|....*....|....*.
gi 1039743050 2425 KTLRISAILDTEPEMDEHFVCTLFNP 2450
Cdd:TIGR00845  594 KTIRVKIVDDEEYEKNDTFFIELGEP 619
Calx-beta pfam03160
Calx-beta domain;
4278-4370 5.28e-10

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 59.19  E-value: 5.28e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4278 GVFQFSPSsrNITVSEDAQTIRICVQRLFGFHGDLIKVSYETTAGSAKPPEDFEAVqKGEVFFQRFQPEIDFEITIINDQ 4357
Cdd:pfam03160    2 GVIGFEPP--TYQVSENDGVAEVCVVRMSGTLRRTVVVPYRTEDGTATAGDDYEPV-EGELVFGPGETEKCINVTIIDDD 78
                           90
                   ....*....|...
gi 1039743050 4358 LPEIEETFYINLT 4370
Cdd:pfam03160   79 VYEGDENFFVLLS 91
7tmB2_EMR cd15439
epidermal growth factor-like module-containing mucin-like hormone receptors, member of the ...
5187-5432 6.34e-10

epidermal growth factor-like module-containing mucin-like hormone receptors, member of the class B2 family of seven-transmembrane G protein-coupled receptors; group II adhesion GPCRs, including the epidermal growth factor (EGF)-module-containing, mucin-like hormone receptor (EMR1-4) and the leukocyte cell-surface antigen CD97, are primarily expressed in cells of the immune system. All EGF-TM7 receptors, which belong to the B2 subfamily of adhesion GPCRs, are members of group II, except for ETL (EGF-TM7-latrophilin related protein), which is classified into group I. Members of the EGF-TM7 receptors are characterized by the presence of varying number of N-terminal EGF-like domains, which play critical roles in ligand recognition and cell adhesion, linked by a stalk region to a class B seven-transmembrane domain. In the case of EMR2, alternative splicing results in four isoforms possessing either two (EGF1,2), three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. EMR2 shares strong sequence homology with CD97, differing by only six amino acids. CD97 is widely expressed on lymphocytes, monocytes, macrophages, dendritic cells, granulocytes and smooth muscle cells as well as in a variety of human tumors including colorectal, gastric, esophageal pancreatic, and thyroid carcinoma. However, unlike CD97, EMR2 is not found in those of CD97-positive tumor cells and is not expressed on lymphocytes but instead on monocytes, macrophages and granulocytes. CD97 has three known ligands: CD55, decay-accelerating factor for regulation of complement system; chondroitin sulfate, a glycosaminoglycan found in the extracellular matrix; and the integrin alpha5beta1, which play a role in angiogenesis. Although EMR2 does not effectively interact with CD55, the fourth EGF-like domain of this receptor binds to chondroitin sulfate to mediate cell attachment.


Pssm-ID: 320555 [Multi-domain]  Cd Length: 263  Bit Score: 63.51  E-value: 6.34e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5187 GLIcISGLCL--AVVSHMFCarHSMFAAK--LLTHMMVASLGTQILFLAsayASPHLSEE-SCSAVAAVAHYLYLCQFSW 5261
Cdd:cd15439     11 GLI-ISLLCLflAILTFLLC--RSIRNTStsLHLQLSLCLFLADLLFLV---GIDRTDNKvLCSIIAGFLHYLFLACFAW 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5262 MLIQSVNFWYV---LVVSDEHTERRC--LLFCLLSWGLPSFVVIllililrgIYHRSMPQIYGLihGDLCFIPN----IY 5332
Cdd:cd15439     85 MFLEAVHLFLTvrnLKVVNYFSSHRFkkRFMYPVGYGLPAVIVA--------ISAAVNPQGYGT--PKHCWLSMekgfIW 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5333 AALFTAALVPLMCLVVVFVVFihaYQLKPQWKGYD-DVFRGR-TNAAEIPLILYLFALiSMTWLWGGLH-------MAYr 5403
Cdd:cd15439    155 SFLGPVCVIIVINLVLFCLTL---WILREKLSSLNaEVSTLKnTRLLTFKAIAQLFIL-GCTWILGLFQvgpvatvMAY- 229
                          250       260
                   ....*....|....*....|....*....
gi 1039743050 5404 hfwmlvLFVIFNSLQGLYVFVVYFILHNQ 5432
Cdd:cd15439    230 ------LFTITNSLQGVFIFLVHCLLNRQ 252
7tmB2_Latrophilin cd15436
Latrophilins, member of the class B2 family of seven-transmembrane G protein-coupled receptors; ...
5189-5429 9.09e-10

Latrophilins, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320552 [Multi-domain]  Cd Length: 258  Bit Score: 62.89  E-value: 9.09e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5189 ICISGLCLAVVSHMFC------ARHSMFAAKLLTHMMVASLgtqiLFLASAYASPHlsEESCSAVAAVAHYLYLCQFSWM 5262
Cdd:cd15436     12 IVISLVCLLICIFTFCffrglqTDRNTIHKNLCINLFIAEL----LFLIGINRTQY--TIACPIFAGLLHFFFLAAFCWL 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5263 LIQSVNFWYVLVVSDEHTERRCLLFCLLSWGLPSFVVILLIlilrGIYHRSmpqiYGL-----IHGDLCFIPNIYAALFT 5337
Cdd:cd15436     86 CLEGVQLYLLLVEVFESEYSRRKYFYLCGYSFPALVVAVSA----AIDYRS----YGTekacwLRVDNYFIWSFIGPVTF 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5338 AALVPLMCLVV-VFVVFIHAYQLKPQWKGYDDVFRGRTNAaeipliLYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNS 5416
Cdd:cd15436    158 VITLNLVFLVItLHKMVSHSDLLKPDSSRLDNIKSWALGA------IALLFLLGLTWSFGLMFINEESVVMAYLFTIFNA 231
                          250
                   ....*....|...
gi 1039743050 5417 LQGLYVFVVYFIL 5429
Cdd:cd15436    232 FQGVFIFIFHCAL 244
7tmB2_EMR_Adhesion_II cd15931
EGF-like module receptors, group II adhesion GPCRs, member of class B2 family of ...
5187-5432 9.13e-10

EGF-like module receptors, group II adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; group II adhesion GPCRs, including the leukocyte cell-surface antigen CD97 and the epidermal growth factor (EGF)-module-containing, mucin-like hormone receptor (EMR1-4), are primarily expressed in cells of the immune system. All EGF-TM7 receptors, which belong to the B2 subfamily B2 of adhesion GPCRs, are members of group II, except for ETL (EGF-TM7-latrophilin related protein), which is classified into group I. Members of the EGF-TM7 receptors are characterized by the presence of varying numbers of N-terminal EGF-like domains, which play critical roles in ligand recognition and cell adhesion, linked by a stalk region to a class B seven-transmembrane domain. In the case of CD97, alternative splicing results in three isoforms possessing either three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. On the other hand, EMR2 generates four isoforms possessing either two (EGF1,2), three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. For example, CD97, which is involved in angiogenesis and the migration and invasion of tumor cells, has been shown to promote cell aggregation in a GPS proteolysis-dependent manner. CD97 is widely expressed on lymphocytes, monocytes, macrophages, dendritic cells, granulocytes and smooth muscle cells as well as in a variety of human tumors including colorectal, gastric, esophageal pancreatic, and thyroid carcinoma. EMR2 shares strong sequence homology with CD97, differing by only six amino acids. However, unlike CD97, EMR2 is not found in those of CD97-positive tumor cells and is not expressed on lymphocytes but instead on monocytes, macrophages and granulocytes. CD97 has three known ligands: CD55, decay-accelerating factor for regulation of complement system; chondroitin sulfate, a glycosaminoglycan found in the extracellular matrix; and the integrin alpha5beta1, which play a role in angiogenesis. Although EMR2 does not effectively interact with CD55, the fourth EGF-like domain of this receptor binds to chondroitin sulfate to mediate cell attachment.


Pssm-ID: 320597 [Multi-domain]  Cd Length: 262  Bit Score: 62.92  E-value: 9.13e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5187 GLICisgLCLAVVSHMFCARHSMFAAKLLTHMMVASLGTQILFLASAYASPhlSEESCSAVAAVAHYLYLCQFSWMLIQS 5266
Cdd:cd15931     15 SLFC---LGLAIFTFLLCRWIPKINTTAHLHLCLCLSMSHTLFLAGIEYVE--NELACTVMAGLLHYLFLASFVWMLLEA 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5267 VNFwYVLVVS---DEHTERRCL---LFCLLSWGLPSFVVillililrGIYHRSMPQIYGL---------------IHGDL 5325
Cdd:cd15931     90 LQL-HLLVRRltkVQVIQRDGLprpLLCLIGYGVPFLIV--------GVSALVYSDGYGEakmcwlsqergfnwsFLGPV 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5326 CFIPNIYAALFTAALvplMCLVVVFVvfihayQLKPQWKGYDDvfrgrTNAAEIPLILYLFaLISMTWLWGGLHMAYRHF 5405
Cdd:cd15931    161 IAIIGINWILFCATL---WCLRQTLS------NMNSDISQLKD-----TRLLTFKAVAQLF-ILGCTWVLGLFQTNPVAL 225
                          250       260
                   ....*....|....*....|....*..
gi 1039743050 5406 WMLVLFVIFNSLQGLYVFVVYFILHNQ 5432
Cdd:cd15931    226 VFQYLFTILNSLQGAFLFLVHCLLNKE 252
7tmB2_Latrophilin-2 cd16006
Latrophilin-2, member of the class B2 family of seven-transmembrane G protein-coupled ...
5189-5432 1.86e-09

Latrophilin-2, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320672 [Multi-domain]  Cd Length: 258  Bit Score: 61.85  E-value: 1.86e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5189 ICISGLCLAVVSHMFCARHSMFAAKLLTHMMVA---SLGTQILFLASAYASPHLSeesCSAVAAVAHYLYLCQFSWMLIQ 5265
Cdd:cd16006     12 IVISLVCLAICIFTFCFFRGLQSDRNTIHKNLCinlFIAEFIFLIGIDKTEYKIA---CPIFAGLLHFFFLAAFAWMCLE 88
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5266 SVNFWYVLVVSDEHTERRCLLFCLLSWGLPSFVVILLIlilrGIYHRSmpqiYGLIHGDLCFIPNIYAALFTAALVPLMC 5345
Cdd:cd16006     89 GVQLYLMLVEVFESEYSRKKYYYVAGYLFPATVVGVSA----AIDYKS----YGTEKACWLRVDNYFIWSFIGPVTFIIL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5346 LVVVFVVFI------HAYQLKPqwkgydDVFRGRTNAAEIPLILYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQG 5419
Cdd:cd16006    161 LNLIFLVITlckmvkHSNTLKP------DSSRLENIKSWVLGAFALLCLLGLTWSFGLLFINEETIVMAYLFTIFNAFQG 234
                          250
                   ....*....|...
gi 1039743050 5420 LYVFVVYFILHNQ 5432
Cdd:cd16006    235 MFIFIFHCALQKK 247
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
4277-4370 5.12e-09

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 56.49  E-value: 5.12e-09
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  4277 MGVFQFSPSsrNITVSEDAQTIRICVQRlfgfHGDLIK---VSYETTAGSAKPPEDFEAVqKGEVFFQRFQPEIDFEITI 4353
Cdd:smart00237    1 AGSVGFEQP--VYTVSESDGEVEVCVVR----TGGARGpvvVPYSTEDGTATAGSDYEPV-PGELTFPPGETEKEIRIKI 73
                            90
                    ....*....|....*..
gi 1039743050  4354 INDQLPEIEETFYINLT 4370
Cdd:smart00237   74 IDDDIYEKDETFYVRLS 90
7tmB2_GPR133 cd15256
orphan adhesion receptor GPR133, member of the class B2 family of seven-transmembrane G ...
5191-5432 6.07e-09

orphan adhesion receptor GPR133, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR133 is an orphan receptor that belongs to the group V adhesion-GPCRs together with GPR144. The function of GPR144 has not yet been characterized, whereas GPR133 is highly expressed in the pituitary gland and is coupled to the Gs protein, leading to activation of adenylyl cyclase pathway. Moreover, genetic variations in the GPR133 have been reported to be associated with adult height and heart rate. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in ligand recognition as well as cell-cell adhesion and cell-matrix interactions, linked by a stalk region to a class B seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. However, several adhesion GPCRs, including GPR 111, GPR115, and CELSR1, are predicted to be non-cleavable at the GAIN domain because of the lack of a consensus catalytic triad sequence (His-Leu-Ser/Thr) within their GPS.


Pssm-ID: 320384 [Multi-domain]  Cd Length: 260  Bit Score: 60.32  E-value: 6.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5191 ISGLCLAVVSHMFCARHSMFAAK-----LLTHMMVASLGTQILFLASAYASPhlSEESCSAVAAVAHYLYLCQFSWMLIQ 5265
Cdd:cd15256     14 LSIFCLAITLVTFAVLSSVSTIRnqryhIHANLSFAVLVAQILLLISFRFEP--GTLPCKIMAILLHFFFLSAFAWMLVE 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5266 SVNFWYVLVVSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHRSmpqiyglihgDLCFIPNIYAALFtAALVPLMC 5345
Cdd:cd15256     92 GLHLYSMVIKVFGSEESKHFYYYGIGWGSPLLICIISLTSALDSYGES----------DNCWLSLENGAIW-AFVAPALF 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5346 LVVVFV-VFIHAYQLKPQWKGYDDVFRGRTNAAEI--PLILYLFALISMTWLWGGLHMAYRHFWMLVLFVIFNSLQGLYV 5422
Cdd:cd15256    161 VIVVNIgILIAVTRVISRISADNYKVHGDANAFKLtaKAVAVLLPILGSSWVFGVLAVNTHALVFQYMFAIFNSLQGFFI 240
                          250
                   ....*....|
gi 1039743050 5423 FVVYFILHNQ 5432
Cdd:cd15256    241 FLFHCLLNSE 250
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2863-3019 8.32e-09

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 62.50  E-value: 8.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2863 SDFIPSLGELIFEPGDKEAIIAVNVLDDTVPEKEESFRVQLKSPRGGAEIGINSSVR--------------VTVLANDGA 2928
Cdd:TIGR00845  448 SDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHvsavaqlaspntatVTILDDDHA 527
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2929 yGVVAFAqnslHKQLEELERDSLVTLNVERLRGTHGRI-----TVAWEAAGSVSDVFPTSGVISFTEDQAMSMITLTVLA 3003
Cdd:TIGR00845  528 -GIFTFE----EDVFHVSESIGIMEVKVLRTSGARGTVivpyrTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVD 602
                          170
                   ....*....|....*.
gi 1039743050 3004 DDLPELSEAVVVTLTQ 3019
Cdd:TIGR00845  603 DEEYEKNDTFFIELGE 618
7tmB2_GPR56 cd15995
orphan adhesion receptor GPR56, member of the class B2 family of seven-transmembrane G ...
5191-5427 1.14e-08

orphan adhesion receptor GPR56, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR56 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include orphan GPCRs such as GPR64, GPR97, GPR112, GPR114, and GPR126. GPR56 is involved in the regulation of oligodendrocyte development and myelination in the central nervous system via coupling to G(12/13) proteins, which leads to the activation of RhoA GTPase. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320661  Cd Length: 269  Bit Score: 59.84  E-value: 1.14e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5191 ISGL-CLAVVSHMFCARHSMFAAKLLTHM--MVASLGTQILFLASAYASPHLSEESCSAVAAVAHYLYLCQFSWMLIQSV 5267
Cdd:cd15995     14 ISALaSVFTIAFYLCSRRKPRDYTIYVHMnlLLAIFLLDTSFLISEPLALTGSEAACRAGGMFLHFSLLACLTWMGIEGY 93
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5268 NFWYVLV-VSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHRSMPQIY----GLIHGDLCFIP----NIYAALFTA 5338
Cdd:cd15995     94 NLYRLVVeVFNTYVPHFLLKLCAVGWGLPIFLVTLIFLVDQDNYGPIILAVHrspeKVTYATICWITdsliSNITNLGLF 173
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5339 ALVPLMCLVVVFVVFIHAYQLKP---QWKgYDDVFRGRTNAAEIPLILYLFALISMTWlwgglhmayrHFWMLVLFVIFN 5415
Cdd:cd15995    174 SLVFLFNMAMLATMVVEILRLRPrthKWS-HVLTLLGLSLVLGIPWALAFFSFASGTF----------QLVIVYLFTIIN 242
                          250
                   ....*....|..
gi 1039743050 5416 SLQGLYVFVVYF 5427
Cdd:cd15995    243 SLQGFLIFLWYW 254
Calx-beta pfam03160
Calx-beta domain;
1880-1951 1.16e-08

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 55.33  E-value: 1.16e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039743050 1880 TSVELVIYRTGGSL-GQVMVEWRVVGGTATEGLDFMGAGDILTFAEGETKKMAILTILDDSEPEDNESILVRL 1951
Cdd:pfam03160   18 GVAEVCVVRMSGTLrRTVVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFVLL 90
Calx-beta pfam03160
Calx-beta domain;
1265-1354 1.22e-08

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 55.33  E-value: 1.22e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1265 SVEEATQNVTLSIIRLKG-LMGEVAVSYATIDDMekppyfppnlarATQGGDYISASGLALFRANQTEATITISILDDAE 1343
Cdd:pfam03160   12 QVSENDGVAEVCVVRMSGtLRRTVVVPYRTEDGT------------ATAGDDYEPVEGELVFGPGETEKCINVTIIDDDV 79
                           90
                   ....*....|.
gi 1039743050 1344 PERSESVFIEL 1354
Cdd:pfam03160   80 YEGDENFFVLL 90
7tmB2_BAI_Adhesion_VII cd15251
brain-specific angiogenesis inhibitors, group VII adhesion GPCRs, member of the class B2 ...
5187-5432 1.38e-08

brain-specific angiogenesis inhibitors, group VII adhesion GPCRs, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Brain-specific angiogenesis inhibitors (BAI1-3) constitute the group VII of cell-adhesion receptors that have been implicated in vascularization of glioblastomas. They belong to the B2 subfamily of class B GPCRs, are predominantly expressed in the brain, and are only present in vertebrates. Three BAIs, like all adhesion receptors, are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. For example, BAI1 N-terminus contain an integrin-binding RGD (Arg-Gly-Asp) motif in addition to five thrombospondin type 1 repeats (TSRs), which are known to regulate the anti-angiogenic activity of thrombospondin-1, whereas BAI2 and BAI3 have four TSRs, but do not possess RGD motifs. The TSRs are functionally involved in cell attachment, activation of latent TGF-beta, inhibition of angiogenesis and endothelial cell migration. The TSRs of BAI1 mediate direct binding to phosphatidylserine, which enables both recognition and internalization of apoptotic cells by phagocytes. Thus, BAI1 functions as a phosphatidylserine receptor that forms a trimeric complex with ELMO and Dock180, leading to activation of Rac-GTPase which promotes the binding and phagocytosis of apoptotic cells. BAI3 can also interact with the ELMO-Dock180 complex to activate the Rac pathway and can also bind to secreted C1ql proteins of the C1Q complement family via its N-terminal TSRs. BAI3 and its ligands C1QL1 are highly expressed during synaptogenesis and are involved in synapse specificity. Moreover, BAI2 acts as a transcription repressor to regulate vascular endothelial growth factor (VEGF) expression through interaction with GA-binding protein gamma (GABP). The N-terminal extracellular domains of all three BAIs also contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain, which undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif to generate N- and C-terminal fragments (NTF and CTF), a putative hormone-binding domain (HBD), and multiple N-glycosylation sites. The C-terminus of each BAI subtype ends with a conserved Gln-Thr-Glu-Val (QTEV) motif known to interact with PDZ domain-containing proteins, but only BAI1 possesses a proline-rich region, which may be involved in protein-protein interactions.


Pssm-ID: 320379  Cd Length: 253  Bit Score: 59.19  E-value: 1.38e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5187 GLICISGLCLAVVSHMFCARHSMFAAKLLTHMMVASLGTQILFLASAyaSPHLSEESCSAVAAVAHYLYLCQFSWMLIQS 5266
Cdd:cd15251     13 GVSCLALLTLLAIYAAFWRYIRSERSIILINFCLSIISSNILILVGQ--TQTLNKGVCTMTAAFLHFFFLSSFCWVLTEA 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5267 vnfW--YVLVVSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHRSMPQIYGLIHGDLcfipnIYAALFTAALVPLM 5344
Cdd:cd15251     91 ---WqsYMAVTGRMRTRLIRKRFLCLGWGLPALVVAVSVGFTRTKGYGTSSYCWLSLEGGL-----LYAFVGPAAAVVLV 162
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5345 CLVVVFVVFihaYQLKPQwKGYDDvfrgrtNA-AEIPLILYLFALISMTWLWGGLHMAYRHFWML-VLFVIFNSLQGLYV 5422
Cdd:cd15251    163 NMVIGILVF---NKLVSR-DGISD------NAmASLWSSCVVLPLLALTWMSAVLAMTDRRSVLFqILFAVFDSLQGFVI 232
                          250
                   ....*....|
gi 1039743050 5423 FVVYFILHNQ 5432
Cdd:cd15251    233 VMVHCILRRE 242
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1265-1354 1.93e-08

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 54.57  E-value: 1.93e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  1265 SVEEATQNVTLSIIRLKGLMGEVAVSYATIDDmekppyfppnlaRATQGGDYISASGLALFRANQTEATITISILDDAEP 1344
Cdd:smart00237   12 TVSESDGEVEVCVVRTGGARGPVVVPYSTEDG------------TATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIY 79
                            90
                    ....*....|
gi 1039743050  1345 ERSESVFIEL 1354
Cdd:smart00237   80 EKDETFYVRL 89
Calx-beta pfam03160
Calx-beta domain;
284-373 1.95e-08

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 54.56  E-value: 1.95e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  284 PVYFAEPCVLRVQE--GETANFTVLRNGSVDGACTVQYATVDGKASGEEgDFAPVEkgETLVFEVGSREQSISVHVKDDG 361
Cdd:pfam03160    2 GVIGFEPPTYQVSEndGVAEVCVVRMSGTLRRTVVVPYRTEDGTATAGD-DYEPVE--GELVFGPGETEKCINVTIIDDD 78
                           90
                   ....*....|..
gi 1039743050  362 IPETDEPFYIVL 373
Cdd:pfam03160   79 VYEGDENFFVLL 90
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
220-373 5.33e-08

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 59.81  E-value: 5.33e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  220 DVFPVQGTVCFGDQEFFKNITVYSLVDEIPEEMEEFTIILLN--------------ATGGAQTGIRTTASLRILRNDDPV 285
Cdd:TIGR00845  449 DYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNlrvgsedgileanhVSAVAQLASPNTATVTILDDDHAG 528
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  286 YFA-EPCVLRVQEG-ETANFTVLRNGSVDGACTVQYATVDGKASGEEGDFAPVEkGEtLVFEVGSREQSISVHVKDDGIP 363
Cdd:TIGR00845  529 IFTfEEDVFHVSESiGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDFEDTC-GE-LEFENDETEKTIRVKIVDDEEY 606
                          170
                   ....*....|
gi 1039743050  364 ETDEPFYIVL 373
Cdd:TIGR00845  607 EKNDTFFIEL 616
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3071-3283 2.15e-07

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 57.88  E-value: 2.15e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3071 ENITVVQLHIVRDKGlfgDISIHLIAkpnfllhinNQATED------EDFVLQDSVIIMKENIKETHAEVAILPDEVPEL 3144
Cdd:TIGR00845  413 ENCGTVALTVVRRGG---DLTNTVYV---------DYRTEDgtanagSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEE 480
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3145 DEGLIVTIAAVNLVNPNFPAEQPRVQR------PRMESAEILieeNDDPRGIFNF-----HVVRDVGgviiahegpppln 3213
Cdd:TIGR00845  481 DEHFYVRLSNLRVGSEDGILEANHVSAvaqlasPNTATVTIL---DDDHAGIFTFeedvfHVSESIG------------- 544
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039743050 3214 VLQVPVVRMAGTFETVNVYWKATPDSA--GLEDFQPSHGMLQFADGQVIAPILVTIIDDSEFELLETFTISL 3283
Cdd:TIGR00845  545 IMEVKVLRTSGARGTVIVPYRTVEGTArgGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
285-373 2.15e-07

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 51.87  E-value: 2.15e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   285 VYFAEPcVLRVQEGE-TANFTVLRNGSVDGACTVQYATVDGKASGEEgDFAPVEKgeTLVFEVGSREQSISVHVKDDGIP 363
Cdd:smart00237    4 VGFEQP-VYTVSESDgEVEVCVVRTGGARGPVVVPYSTEDGTATAGS-DYEPVPG--ELTFPPGETEKEIRIKIIDDDIY 79
                            90
                    ....*....|
gi 1039743050   364 ETDEPFYIVL 373
Cdd:smart00237   80 EKDETFYVRL 89
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3164-3400 2.24e-07

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 57.88  E-value: 2.24e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3164 AEQPRVQRPRMESAEILIEENDDPRGIF----NFHVVRDVGGViiahegppplnvlQVPVVRMAGTF-ETVNVYWKaTPD 3238
Cdd:TIGR00845  376 AADAARKAVSMHEVATDDEENDPVSKIFfepgHYTCLENCGTV-------------ALTVVRRGGDLtNTVYVDYR-TED 441
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3239 ---SAGlEDFQPSHGMLQFADGQVIAPILVTIIDDSEFELLETFTISLVSVTGG--------------GRLGDDVSVNVV 3301
Cdd:TIGR00845  442 gtaNAG-SDYEFTEGTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGsedgileanhvsavAQLASPNTATVT 520
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3302 IAPNDSPfGIFGFEKKTVMVdgpllsDDPDSYVTLTVVRSPGGKGAVRL-HWAIEEKAK---DDLSPLNGTLYFDETESQ 3377
Cdd:TIGR00845  521 ILDDDHA-GIFTFEEDVFHV------SESIGIMEVKVLRTSGARGTVIVpYRTVEGTARgggKDFEDTCGELEFENDETE 593
                          250       260
                   ....*....|....*....|...
gi 1039743050 3378 KSVILHTLKDGMVGEDRRFIIEL 3400
Cdd:TIGR00845  594 KTIRVKIVDDEEYEKNDTFFIEL 616
7tmB2_GPR128 cd15257
orphan adhesion receptor GPR128, member of the class B2 family of seven-transmembrane G ...
5244-5426 2.46e-07

orphan adhesion receptor GPR128, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR128 is an orphan receptor of the adhesion family (subclass B2) that belongs to the class B GPCRs. Expression of GPR128 was detected in the mouse intestinal mucosa and is thought to be involved in energy balance, as its knockout mice showed a decrease in body weight gain and an increase in intestinal contraction frequency compared to wild-type controls. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320385 [Multi-domain]  Cd Length: 303  Bit Score: 56.03  E-value: 2.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5244 CSAVAAVAHYLYLCQFSWMLIQSVNFWYVLVVSDEHTERRCLLFC-LLSWGLPSFVVILLIlilrGIYHR---SMPQI-Y 5318
Cdd:cd15257     93 CTAVAALLHYFLLVTFMWNAVYSAQLYLLLIRMMKPLPEMFILQAsAIGWGIPAVVVAITL----GATYRfptSLPVFtR 168
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5319 GLIHGDLCFI----PN--IYAALFTAALVPL-MCLVVVFVVFIHAYQlKPQWKGYDD-VFRGRTNAAEIPLILYLFALIS 5390
Cdd:cd15257    169 TYRQEEFCWLaaldKNfdIKKPLLWGFLLPVgLILITNVILFIMTSQ-KVLKKNNKKlTTKKRSYMKKIYITVSVAVVFG 247
                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1039743050 5391 MTWLWGGLHMAYRHFWMLV---LFVIFNSLQGLYVFVVY 5426
Cdd:cd15257    248 ITWILGYLMLVNNDLSKLVfsyIFCITNTTQGVQIFILY 286
7tmB2_BAI2 cd15988
brain-specific angiogenesis inhibitor 2, a group VII adhesion GPCR, member of the class B2 ...
5214-5432 3.29e-07

brain-specific angiogenesis inhibitor 2, a group VII adhesion GPCR, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Brain-specific angiogenesis inhibitors (BAI1-3) constitute the group VII of cell-adhesion receptors that have been implicated in vascularization of glioblastomas. They belong to the B2 subfamily of class B GPCRs, are predominantly expressed in the brain, and are only present in vertebrates. Three BAIs, like all adhesion receptors, are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. For example, BAI1 N-terminus contain an integrin-binding RGD (Arg-Gly-Asp) motif in addition to five thrombospondin type 1 repeats (TSRs), which are known to regulate the anti-angiogenic activity of thrombospondin-1, whereas BAI2 and BAI3 have four TSRs, but do not possess RGD motifs. The TSRs are functionally involved in cell attachment, activation of latent TGF-beta, inhibition of angiogenesis and endothelial cell migration. The TSRs of BAI1 mediates direct binding to phosphatidylserine, which enables both recognition and internalization of apoptotic cells by phagocytes. Thus, BAI1 functions as a phosphatidylserine receptor that forms a trimeric complex with ELMO and Dock180, leading to activation of Rac-GTPase which promotes the binding and phagocytosis of apoptotic cells. BAI3 can also interact with the ELMO-Dock180 complex to activate the Rac pathway and can also bind to secreted C1ql proteins of the C1Q complement family via its N-terminal TSRs. BAI3 and its ligands C1QL1 are highly expressed during synaptogenesis and are involved in synapse specificity. Moreover, BAI2 acts as a transcription repressor to regulate vascular endothelial growth factor (VEGF) expression through interaction with GA-binding protein gamma (GABP). The N-terminal extracellular domains of all three BAIs also contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain, which undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif to generate N- and C-terminal fragments (NTF and CTF), a putative hormone-binding domain (HBD), and multiple N-glycosylation sites. The C-terminus of each BAI subtype ends with a conserved Gln-Thr-Glu-Val (QTEV) motif known to interact with PDZ domain-containing proteins, but only BAI1 possesses a proline-rich region, which may be involved in protein-protein interactions.


Pssm-ID: 320654 [Multi-domain]  Cd Length: 291  Bit Score: 55.73  E-value: 3.29e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5214 LLTHMMVASLGTQILFLASAyaSPHLSEESCSAVAAVAHYLYLCQFSWMLIQSvnfW--YVLVVSDEHTERRCLLFCLLS 5291
Cdd:cd15988     40 ILLNFCLSILASNILILVGQ--SQTLSKGVCTMTAAFLHFFFLSSFCWVLTEA---WqsYLAVIGRMRTRLVRKRFLCLG 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5292 WGLPSFVVILLILILRGIYHRSMPQIYGLIHGDLcfipnIYAALFTAALVPLMCLVVVFVVFIH-------AYQLKPQWK 5364
Cdd:cd15988    115 WGLPALVVAVSVGFTRTKGYGTASYCWLSLEGGL-----LYAFVGPAAVIVLVNMLIGIIVFNKlmsrdgiSDKSKKQRA 189
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5365 GYDDVFRGR----------------TNAAEIPLILYLFA------LISMTWLWGGLHMAYRHFWML-VLFVIFNSLQGLY 5421
Cdd:cd15988    190 GSEAEPCSSlllkcskcgvvssaamSSATASSAMASLWSscvvlpLLALTWMSAVLAMTDRRSILFqVLFAVFNSVQGFV 269
                          250
                   ....*....|.
gi 1039743050 5422 VFVVYFILHNQ 5432
Cdd:cd15988    270 IITVHCFLRRE 280
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3214-3283 5.02e-07

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 50.72  E-value: 5.02e-07
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039743050  3214 VLQVPVVRMAGTFETVNVYWKATPDSA-GLEDFQPSHGMLQFADGQVIAPILVTIIDDSEFELLETFTISL 3283
Cdd:smart00237   19 EVEVCVVRTGGARGPVVVPYSTEDGTAtAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRL 89
LamGL smart00560
LamG-like jellyroll fold domain;
631-768 7.63e-07

LamG-like jellyroll fold domain;


Pssm-ID: 214722 [Multi-domain]  Cd Length: 133  Bit Score: 51.65  E-value: 7.63e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   631 FTFSAWVMPNANTNGFLIAKDdshgsiYYGVKIQTNETHVTLSLHYKTFGSNVTYIaksTVMKYLEEGVWLHVLIILD-- 708
Cdd:smart00560    3 FTLEAWVKLESAGGSQPIITG------AAVAQPTISEKALTFFLRAKSVQGWQTAR---TGATADWIGVWVHLAGVYDgg 73
                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039743050   709 DGIIEFYLDGkamprgikSLKGEAITDGPGI-------LRIGAGMDGGARFTGWMQDVRTYERKLTP 768
Cdd:smart00560   74 AGKLSLYVNG--------VEVATSETQPSPSsgnlpqgGRILLGGAGGENFSGRLDEVRVYNRALTA 132
7tmB2_BAI1 cd15990
brain-specific angiogenesis inhibitor 1, a group VII adhesion GPCR, member of the class B2 ...
5244-5432 1.29e-06

brain-specific angiogenesis inhibitor 1, a group VII adhesion GPCR, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Brain-specific angiogenesis inhibitors (BAI1-3) constitute the group VII of cell-adhesion receptors that have been implicated in vascularization of glioblastomas. They belong to the B2 subfamily of class B GPCRs, are predominantly expressed in the brain, and are only present in vertebrates. Three BAIs, like all adhesion receptors, are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. For example, BAI1 N-terminus contain an integrin-binding RGD (Arg-Gly-Asp) motif in addition to five thrombospondin type 1 repeats (TSRs), which are known to regulate the anti-angiogenic activity of thrombospondin-1, whereas BAI2 and BAI3 have four TSRs, but do not possess RGD motifs. The TSRs are functionally involved in cell attachment, activation of latent TGF-beta, inhibition of angiogenesis and endothelial cell migration. The TSRs of BAI1 mediates direct binding to phosphatidylserine, which enables both recognition and internalization of apoptotic cells by phagocytes. Thus, BAI1 functions as a phosphatidylserine receptor that forms a trimeric complex with ELMO and Dock180, leading to activation of Rac-GTPase which promotes the binding and phagocytosis of apoptotic cells. BAI3 can also interact with the ELMO-Dock180 complex to activate the Rac pathway and can also bind to secreted C1ql proteins of the C1Q complement family via its N-terminal TSRs. BAI3 and its ligands C1QL1 are highly expressed during synaptogenesis and are involved in synapse specificity. Moreover, BAI2 acts as a transcription repressor to regulate vascular endothelial growth factor (VEGF) expression through interaction with GA-binding protein gamma (GABP). The N-terminal extracellular domains of all three BAIs also contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain, which undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif to generate N- and C-terminal fragments (NTF and CTF), a putative hormone-binding domain (HBD), and multiple N-glycosylation sites. The C-terminus of each BAI subtype ends with a conserved Gln-Thr-Glu-Val (QTEV) motif known to interact with PDZ domain-containing proteins, but only BAI1 possesses a proline-rich region, which may be involved in protein-protein interactions.


Pssm-ID: 320656  Cd Length: 267  Bit Score: 53.46  E-value: 1.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5244 CSAVAAVAHYLYLCQFSWMLIQSvnfWYVLVVSDEHTERRCL--LFCLLSWGLPSFVVILLILILRGIYHRSMPQIYGLI 5321
Cdd:cd15990     71 CTLVAAFLHFFFLSSFCWVLTEA---WQSYMAVTGRLRNRIIrkRFLCLGWGLPALVVAISVGFTKAKGYGTVNYCWLSL 147
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5322 HGDLcfipnIYAALFTAALVPLMCLVVVFVVFIHAYQLkpqwKGYDDVFRGRTNAAEIPLILYLFALISMTWLWGGLHMA 5401
Cdd:cd15990    148 EGGL-----LYAFVGPAAAVVLVNMVIGILVFNKLVSK----DGITDKKLKERAGASLWSSCVVLPLLALTWMSAVLAIT 218
                          170       180       190
                   ....*....|....*....|....*....|..
gi 1039743050 5402 YRHFWML-VLFVIFNSLQGLYVFVVYFILHNQ 5432
Cdd:cd15990    219 DRRSALFqILFAVFDSLEGFVIVMVHCILRRE 250
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1394-1482 2.24e-06

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 48.79  E-value: 2.24e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  1394 GTVQLSATSVHVAENhVGPI-INVTRTGGTFADVSVKFKAVPITAAAGEDYSIASSDVVLLEGETTKAVPIYIINDIYPE 1472
Cdd:smart00237    2 GSVGFEQPVYTVSES-DGEVeVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYE 80
                            90
                    ....*....|
gi 1039743050  1473 LEETFLVQLL 1482
Cdd:smart00237   81 KDETFYVRLS 90
7tmB2_GPR113 cd15253
orphan adhesion receptor GPR113, member of the class B2 family of seven-transmembrane G ...
5184-5438 2.73e-06

orphan adhesion receptor GPR113, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR113 is an orphan receptor that belongs to group VI adhesion-GPCRs along with GPR110, GPR111, GPR115, and GPR116. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in ligand recognition as well as cell-cell adhesion and cell-matrix interactions, linked by a stalk region to a class B seven-transmembrane domain. GPR113 contains a hormone binding domain and one EGF (epidermal grown factor) domain, and is primarily expressed in a subset of taste receptor cells. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. However, several adhesion GPCRs, including GPR 111, GPR115, and CELSR1, are predicted to be non-cleavable at the GAIN domain because of the lack of a consensus catalytic triad sequence (His-Leu-Ser/Thr) within their GPS.


Pssm-ID: 320381 [Multi-domain]  Cd Length: 271  Bit Score: 52.46  E-value: 2.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5184 FSAGLICISGLCLAVVSHMFC-------------ARHSMFAAKLLTHMMVASLGTQILFLASAYASPHLSEESCSAVAAV 5250
Cdd:cd15253      2 FWLDFLSQVGLGASILALLLClgiyrlvwrsvvrNKISYFRHMTLVNIAFSLLLADTCFLGATFLSAGHESPLCLAAAFL 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5251 AHYLYLCQFSWMLIQSVNFWYVLVVSDEHTERRCLLFCLLSWGLpsFVVILLILILRGIYHrsmPQiYGLIHGDLCFIPN 5330
Cdd:cd15253     82 CHFFYLATFFWMLVQALMLFHQLLFVFHQLAKRSVLPLMVTLGY--LCPLLIAAATVAYYY---PK-RQYLHEGACWLNG 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5331 IYAALFTAAlVPLMCLVVVFVVFIHAYQLKPQWKGYDDVFRGRTNAAEIPLI---LYLFALISMTWLWGGLHMAYR---- 5403
Cdd:cd15253    156 ESGAIYAFS-IPVLAIVLVNLLVLFVVLMKLMRPSVSEGPPPEERKALLSIFkalLVLTPVFGLTWGLGVATLTGEssqv 234
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1039743050 5404 -HFwmlvLFVIFNSLQGLYVFVvyfilhnqTCCPMK 5438
Cdd:cd15253    235 sHY----GFAILNAFQGVFILL--------FGCLMD 258
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
49-259 3.39e-06

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 54.03  E-value: 3.39e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   49 ENDDPGGIFefsYDSRGPYVIKEGDAVELRITRSRGSLVKQ-FLRFHVEPRESN---EFYGNMGVLEFTPGEREVVITLL 124
Cdd:TIGR00845  395 ENDPVSKIF---FEPGHYTCLENCGTVALTVVRRGGDLTNTvYVDYRTEDGTANagsDYEFTEGTLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  125 TRLDGTPELDEHFWVILSS-------------HGERESKLGCATLVNITILKNDYPhGIIEFVSDGLSASikeskgEDIY 191
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLSNlrvgsedgileanHVSAVAQLASPNTATVTILDDDHA-GIFTFEEDVFHVS------ESIG 544
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039743050  192 HAVYGVIRTRGNFGAVNVS-WMVSPDFT---QDVFPVQGTVCFGDQEFFKNITVYSLVDEIPEEMEEFTIIL 259
Cdd:TIGR00845  545 IMEVKVLRTSGARGTVIVPyRTVEGTARgggKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
Calx-beta pfam03160
Calx-beta domain;
1394-1481 3.58e-06

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 48.40  E-value: 3.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1394 GTVQLSATSVHVAENhVGPI-INVTRTGGTFA-DVSVKFKAVPITAAAGEDYSIASSDVVLLEGETTKAVPIYIIND-IY 1470
Cdd:pfam03160    2 GVIGFEPPTYQVSEN-DGVAeVCVVRMSGTLRrTVVVPYRTEDGTATAGDDYEPVEGELVFGPGETEKCINVTIIDDdVY 80
                           90
                   ....*....|.
gi 1039743050 1471 pELEETFLVQL 1481
Cdd:pfam03160   81 -EGDENFFVLL 90
PTX cd00152
Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their ...
630-774 3.80e-06

Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.


Pssm-ID: 238086  Cd Length: 201  Bit Score: 51.12  E-value: 3.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  630 NFTFSAWVMPNANTNGFLIakddshgsIYYGVKIQTNEthvtLSLHYKTFGSNVTYIAKSTVMKYLEE--GVWLHVLIIL 707
Cdd:cd00152     32 AFTLCLWVYTDLSTREYSL--------FSYATKGQDNE----LLLYKEKDGGYSLYIGGKEVTFKVPEsdGAWHHICVTW 99
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039743050  708 D--DGIIEFYLDGKAMPRGIKSlKGEAITDGPGIL------RIGAGMDGGARFTGWMQDVRTYERKLTPEEIYEL 774
Cdd:cd00152    100 EstSGIAELWVNGKLSVRKSLK-KGYTVGPGGSIIlgqeqdSYGGGFDATQSFVGEISDVNMWDSVLSPEEIKNV 173
Calx-beta pfam03160
Calx-beta domain;
3214-3283 4.56e-06

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 48.01  E-value: 4.56e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039743050 3214 VLQVPVVRMAGTFE-TVNVYWKATPDSA-GLEDFQPSHGMLQFADGQVIAPILVTIIDDSEFELLETFTISL 3283
Cdd:pfam03160   19 VAEVCVVRMSGTLRrTVVVPYRTEDGTAtAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFVLL 90
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
1509-1599 4.65e-06

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 48.02  E-value: 4.65e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  1509 GLFGFQNTKFIVEEpefNSVRVNVPIIRNSGTLGNVTVQWVAIINGQFATGDLRVVSGNVTFAPGETIQTLLLEVLADDV 1588
Cdd:smart00237    2 GSVGFEQPVYTVSE---SDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDI 78
                            90
                    ....*....|.
gi 1039743050  1589 PEIEEVVQVQL 1599
Cdd:smart00237   79 YEKDETFYVRL 89
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
2862-2903 4.65e-06

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 48.02  E-value: 4.65e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 1039743050  2862 QSDFIPSLGELIFEPGDKEAIIAVNVLDDTVPEKEESFRVQL 2903
Cdd:smart00237   48 GSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRL 89
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
2360-2524 5.77e-06

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 53.26  E-value: 5.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2360 IFLrEPTSLYVQESV-AVLVIVREPAQGLFGTVAVQFVvTEVNSSTESKDLSPSKGFIVLEEGVRSKTLRISAILDTEPE 2438
Cdd:TIGR00845  402 IFF-EPGHYTCLENCgTVALTVVRRGGDLTNTVYVDYR-TEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIIDDDIFE 479
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2439 MDEHFVCTLFNPTGG--------------ARLGAHVQTLITIFQNQAPlGLFSIsavENSATSidVEESNRSVYLNVSRT 2504
Cdd:TIGR00845  480 EDEHFYVRLSNLRVGsedgileanhvsavAQLASPNTATVTILDDDHA-GIFTF---EEDVFH--VSESIGIMEVKVLRT 553
                          170       180
                   ....*....|....*....|
gi 1039743050 2505 NGLDLTASVQWETVSETAFG 2524
Cdd:TIGR00845  554 SGARGTVIVPYRTVEGTARG 573
7tmB2_CELSR2 cd15992
Cadherin EGF LAG seven-pass G-type receptor 2, member of the class B2 family of ...
5244-5429 9.74e-06

Cadherin EGF LAG seven-pass G-type receptor 2, member of the class B2 family of seven-transmembrane G protein-coupled receptors; The group IV adhesion GPCRs include the cadherin EGF LAG seven-pass G-type receptors (CELSRs) and their Drosophila homolog Flamingo (also known as Starry night). These receptors are also classified as that belongs to the EGF-TM7 group of subfamily B2 adhesion GPCRs, because they contain EGF-like domains. Functionally, the group IV receptors act as key regulators of many physiological processes such as endocrine cell differentiation, neuronal migration, dendrite growth, axon, guidance, lymphatic vessel and valve formation, and planar cell polarity (PCP) during embryonic development. Three mammalian orthologs of Flamingo, Celsr1-3, are widely expressed in the nervous system from embryonic development until the adult stage. Each Celsr exhibits different expression patterns in the developing brain, suggesting that they serve distinct functions. Mutations of CELSR1 cause neural tube defects in the nervous system, while mutations of CELSR2 are associated with coronary heart disease. Moreover, CELSR1 and several other PCP signaling molecules, such as dishevelled, prickle, frizzled, have been shown to be upregulated in B lymphocytes of chronic lymphocytic leukemia patients. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. In the case of CELSR/Flamingo/Starry night, their extracellular domains comprise nine cadherin repeats linked to a series of epidermal growth factor (EGF)-like and laminin globular (G)-like domains. The cadherin repeats contain sequence motifs that mediate calcium-dependent cell-cell adhesion by homophilic interactions. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320658  Cd Length: 255  Bit Score: 50.59  E-value: 9.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5244 CSAVAAVAHYLYLCQFSWMLIQSVNFWYVLVVSDEHTERRCLLFCLLSWGLPSFVVillililrGIYHRSMPQIYGliHG 5323
Cdd:cd15992     67 CTVIAILLHFFYLCTFSWLFLEGLHIYRMLSEVRDINYGPMRFYYLIGWGVPAFIT--------GLAVGLDPEGYG--NP 136
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5324 DLCFIpNIYAALFTAALVPLmCLVVVFVVFIHAYQLK----PQWKGYDDVfRGRTNAAEIPLILYLfaLISMTWLWGGLH 5399
Cdd:cd15992    137 DFCWL-SIYDTLIWSFAGPV-AFAVSMNVFLYILSSRascsAQQQSFEKK-KGPVSGLRTAFTVLL--LVSVTCLLALLS 211
                          170       180       190
                   ....*....|....*....|....*....|
gi 1039743050 5400 MAYRHFWMLVLFVIFNSLQGLYVFVVYFIL 5429
Cdd:cd15992    212 VNSDVILFHYLFAGFNCLQGPFIFLSHVVL 241
Calx-beta pfam03160
Calx-beta domain;
2115-2201 1.01e-05

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 46.86  E-value: 1.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 2115 EANVTIQLFVNREFGSL-GAINVTYATVPGIvslknntegnlAEPESDFIPVVGSLVLEEGETTAAISITVLEDDIPELK 2193
Cdd:pfam03160   15 ENDGVAEVCVVRMSGTLrRTVVVPYRTEDGT-----------ATAGDDYEPVEGELVFGPGETEKCINVTIIDDDVYEGD 83

                   ....*...
gi 1039743050 2194 EYFLVNLT 2201
Cdd:pfam03160   84 ENFFVLLS 91
7tmB1_GLP2R cd15266
glucagon-like peptide-2 receptor, member of the class B family of seven-transmembrane G ...
5184-5426 1.76e-05

glucagon-like peptide-2 receptor, member of the class B family of seven-transmembrane G protein-coupled receptors; Glucagon-like peptide-2 receptor (GLP2R) is a member of the glucagon receptor family of G protein-coupled receptors, which also includes glucagon receptor (GCGR) and GLP1R. GLP2R is activated by glucagon-like peptide 2, which is derived from the large proglucagon precursor. Activation of GLP1R stimulates glucose-dependent insulin secretion from pancreatic beta cells, whereas activation of GLP2R stimulates intestinal epithelial proliferation and increases villus height in the small intestine. GCGR regulates blood glucose levels by control of hepatic glycogenolysis and gluconeogenesis and by regulation of insulin secretion from the pancreatic beta-cells. GLP2R belongs to the B1 (or secretin-like) subfamily of class B GPCRs, which includes receptors for polypeptide hormones of 27-141 amino-acid residues such as secretin, calcitonin gene-related peptide, parathyroid hormone (PTH), and corticotropin-releasing factor. These receptors contain the large N-terminal extracellular domain (ECD), which plays a critical role in hormone recognition by binding to the C-terminal portion of the peptide. On the other hand, the N-terminal segment of the hormone induces receptor activation by interacting with the receptor transmembrane domains and connecting extracellular loops, triggering intracellular signaling pathways. All members of the B1 subfamily preferentially couple to G proteins of G(s) family, which positively stimulate adenylate cyclase, leading to increased intracellular cAMP formation and calcium influx. However, depending on their cellular location, GCGR and GLP receptors can activate multiple G proteins, which can in turn stimulate different second messenger pathways.


Pssm-ID: 320394 [Multi-domain]  Cd Length: 280  Bit Score: 50.13  E-value: 1.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5184 FSAGLICISGLCLAVVSHMFCARH----SMFAAKLLTHMMVasLGTQILFLASAYASP--------HLSEE---SCSAVA 5248
Cdd:cd15266     14 LSLISLSLALLILLLLRKLHCTRNyihmNLFASFILRALAV--LIKDIVLYSTYSKRPddetgwisYLSEEsstSCRVAQ 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5249 AVAHYLYLCQFSWMLIQSVnFWYVLVVSDEHTERRCLL-FCLLSWGLPS-FVV----ILLILILRGIYHRSM-PQIYGLI 5321
Cdd:cd15266     92 VFMHYFVGANYFWLLVEGL-YLHTLLVTAVLSERRLLKkYMLIGWGTPVlFVVpwgvAKILLENTGCWGRNEnMGIWWII 170
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5322 HGDLcfipniyaalftaalvpLMCLVVVFVVFIHA-----YQLKPQWKGYDDV-FR-GRTNAAEIPLI---LYLFALISM 5391
Cdd:cd15266    171 RGPI-----------------LLCITVNFYIFLKIlklllSKLKAQQMRFTDYkYRlARSTLVLIPLLgihEVVFSFITD 233
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1039743050 5392 TWLWGGLhmayRHFWMLVLFViFNSLQGLYVFVVY 5426
Cdd:cd15266    234 EQVEGFS----RHIRLFIQLT-LSSFQGFLVAVLY 263
7tmB1_hormone_R cd15041
The subfamily B1 of hormone receptors (secretin-like), member of the class B family ...
5243-5426 5.95e-05

The subfamily B1 of hormone receptors (secretin-like), member of the class B family seven-transmembrane G protein-coupled receptors; The B1 subfamily of class B GPCRs, also referred to as secretin-like receptor family, includes receptors for polypeptide hormones of 27-141 amino-acid residues such as secretin, glucagon, glucagon-like peptide (GLP), calcitonin gene-related peptide, parathyroid hormone (PTH), and corticotropin-releasing factor. These receptors contain the large N-terminal extracellular domain (ECD), which plays a critical role in hormone recognition by binding to the C-terminal portion of the peptide. On the other hand, the N-terminal segment of the hormone induces receptor activation by interacting with the receptor transmembrane domains and connecting extracellular loops, triggering intracellular signaling pathways. All members of this subfamily preferentially couple to G proteins of G(s) family, which positively stimulate adenylate cyclase, leading to increased intracellular cAMP formation and calcium influx. Moreover, the B1 subfamily receptors play key roles in hormone homeostasis and are promising drug targets in various human diseases including diabetes, osteoporosis, obesity, neurodegenerative conditions (Alzheimer###s and Parkinson's), cardiovascular disease, migraine, and psychiatric disorders (anxiety, depression). Furthermore, the subfamilies B2 and B3 consist of receptors that are capable of interacting with epidermal growth factors (EGF) and the Drosophila melanogaster Methuselah gene product (Mth), respectively. The class B GPCRs have been identified in all the vertebrates, from fishes to mammals, as well as invertebrates including Caenorhabditis elegans and Drosophila melanogaster, but are not present in plants, fungi, or prokaryotes.


Pssm-ID: 341321 [Multi-domain]  Cd Length: 273  Bit Score: 48.37  E-value: 5.95e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5243 SCSAVAAVAHYLYLCQFSWMLIQSVNFWYVLVVSDEHTERRCLLFCLLSWGLPsFVVILLILILRGIYHRSMpqiyglih 5322
Cdd:cd15041     81 GCKLLSVLKRYFKSANYFWMLCEGLYLHRLIVVAFFSEPSSLKLYYAIGWGLP-LVIVVIWAIVRALLSNES-------- 151
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5323 gdlCFIPNIYAALFTAALVP-LMCLVVVFVVFIH-----AYQLKPQWKGYDDVFRGRTNAAE--IPLI-LYLFALISMTW 5393
Cdd:cd15041    152 ---CWISYNNGHYEWILYGPnLLALLVNLFFLINilrilLTKLRSHPNAEPSNYRKAVKATLilIPLFgIQYLLTIYRPP 228
                          170       180       190
                   ....*....|....*....|....*....|...
gi 1039743050 5394 LWGGLHMAYRHFwmlvlFVIFNSLQGLYVFVVY 5426
Cdd:cd15041    229 DGSEGELVYEYF-----NAILNSSQGFFVAVIY 256
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
4154-4369 5.97e-05

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 49.79  E-value: 5.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4154 VPEEAANSQVGFESAAFQLMDiKAGTSQVMVSRKGTYGR--LSVAWTT--GYA-PGSEipepivignMTPTLGSLSFVHG 4228
Cdd:TIGR00845  393 DEENDPVSKIFFEPGHYTCLE-NCGTVALTVVRRGGDLTntVYVDYRTedGTAnAGSD---------YEFTEGTLVFKPG 462
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4229 EERKGVLLWTFPSP--GRPEAFVLHLSGLRSSAAGG----------AQLRSGFT-TAEI---EPMGVFQFSpsSRNITVS 4292
Cdd:TIGR00845  463 ETQKEFRIGIIDDDifEEDEHFYVRLSNLRVGSEDGileanhvsavAQLASPNTaTVTIlddDHAGIFTFE--EDVFHVS 540
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039743050 4293 EDAQTIRICVQRLFGFHGDLIkVSYETTAGSAKP-PEDFEAVQkGEVFFQRFQPEIDFEITIINDQLPEIEETFYINL 4369
Cdd:TIGR00845  541 ESIGIMEVKVLRTSGARGTVI-VPYRTVEGTARGgGKDFEDTC-GELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616
7tmB2_GPR116-like_Adhesion_VI cd15932
orphan GPR116 and related proteins, group IV adhesion GPCRs, member of the class B2 family of ...
5215-5424 6.64e-05

orphan GPR116 and related proteins, group IV adhesion GPCRs, member of the class B2 family of seven-transmembrane G protein-coupled receptors; group VI adhesion GPCRs consist of orphan receptors GPR110, GPR111, GPR113, GPR115, GPR116, and closely related proteins. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in ligand recognition as well as cell-cell adhesion and cell-matrix interactions, linked by a stalk region to a class B seven-transmembrane domain. GPR110 possesses a SEA box in the N-terminal has been identified as an oncogene over-expressed in lung and prostate cancer. GPR113 contains a hormone binding domain and one EGF (epidermal grown factor) domain. GPR112 has extremely long N-terminus (about 2,400 amino acids) containing a number of Ser/Thr-rich glycosylation sites and a pentraxin (PTX) domain. GPR116 has two C2-set immunoglobulin-like repeats, which is found in the members of the immunoglobulin superfamily of cell surface proteins, and a SEA (sea urchin sperm protein, enterokinase, and a grin)-box, which is present in the extracellular domain of the transmembrane mucin (MUC) family and known to enhance O-glycosylation. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. However, several adhesion GPCRs, including GPR 111, GPR115, and CELSR1, are predicted to be non-cleavable at the GAIN domain because of the lack of a consensus catalytic triad sequence (His-Leu-Ser/Thr) within their GPS.


Pssm-ID: 320598 [Multi-domain]  Cd Length: 268  Bit Score: 48.46  E-value: 6.64e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5215 LTHMMVASLGTQILFLASAYASPHLSEE-SCSAVAAVAHYLYLCQFSWMLIQSVNFWYVLVVSDEHTERRCLL---FCLl 5290
Cdd:cd15932     46 LVNIALSLLIADIWFIIGAAISTPPNPSpACTAATFFIHFFYLALFFWMLTLGLLLFYRLVLVFHDMSKSTMMaiaFSL- 124
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5291 SWGLPSF--VVILLILILRGIYHRsmpqiyglihGDLCFIPNIYAALFTAALVPLMCLVVVFVVFIHAYQLKPQWKGYDD 5368
Cdd:cd15932    125 GYGCPLIiaIITVAATAPQGGYTR----------KGVCWLNWDKTKALLAFVIPALAIVVVNFIILIVVIFKLLRPSVGE 194
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5369 VFRGRTNAAEIPL---ILYLFALISMTWLWG-GLHMAYRHFWMLVLFVIFNSLQGLYVFV 5424
Cdd:cd15932    195 RPSKDEKNALVQIgksVAILTPLLGLTWGFGlGTMIDPKSLAFHIIFAILNSFQGFFILV 254
7tmB2_BAI3 cd15989
brain-specific angiogenesis inhibitor 3, a group VII adhesion GPCR, member of the class B2 ...
5186-5432 6.84e-05

brain-specific angiogenesis inhibitor 3, a group VII adhesion GPCR, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Brain-specific angiogenesis inhibitors (BAI1-3) constitute the group VII of cell-adhesion receptors that have been implicated in vascularization of glioblastomas. They belong to the B2 subfamily of class B GPCRs, are predominantly expressed in the brain, and are only present in vertebrates. Three BAIs, like all adhesion receptors, are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. For example, BAI1 N-terminus contain an integrin-binding RGD (Arg-Gly-Asp) motif in addition to five thrombospondin type 1 repeats (TSRs), which are known to regulate the anti-angiogenic activity of thrombospondin-1, whereas BAI2 and BAI3 have four TSRs, but do not possess RGD motifs. The TSRs are functionally involved in cell attachment, activation of latent TGF-beta, inhibition of angiogenesis and endothelial cell migration. The TSRs of BAI1 mediates direct binding to phosphatidylserine, which enables both recognition and internalization of apoptotic cells by phagocytes. Thus, BAI1 functions as a phosphatidylserine receptor that forms a trimeric complex with ELMO and Dock180, leading to activation of Rac-GTPase which promotes the binding and phagocytosis of apoptotic cells. BAI3 can also interact with the ELMO-Dock180 complex to activate the Rac pathway and can also bind to secreted C1ql proteins of the C1Q complement family via its N-terminal TSRs. BAI3 and its ligands C1QL1 are highly expressed during synaptogenesis and are involved in synapse specificity. Moreover, BAI2 acts as a transcription repressor to regulate vascular endothelial growth factor (VEGF) expression through interaction with GA-binding protein gamma (GABP). The N-terminal extracellular domains of all three BAIs also contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain, which undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif to generate N- and C-terminal fragments (NTF and CTF), a putative hormone-binding domain (HBD), and multiple N-glycosylation sites. The C-terminus of each BAI subtype ends with a conserved Gln-Thr-Glu-Val (QTEV) motif known to interact with PDZ domain-containing proteins, but only BAI1 possesses a proline-rich region, which may be involved in protein-protein interactions.


Pssm-ID: 320655 [Multi-domain]  Cd Length: 293  Bit Score: 48.53  E-value: 6.84e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5186 AGLICISGLCLAVVSHMFCARHSMFAAKLLTHMMVASLGTQILFLASAYASPHLSeeSCSAVAAVAHYLYLCQFSWMLIQ 5265
Cdd:cd15989     14 CGLSCLALITLAVVYAALWRYIRSERSIILINFCLSIISSNILILVGQTQTHNKG--ICTMTTAFLHFFFLASFCWVLTE 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5266 SvnfW--YVLVVSDEHTERRCLLFCLLSWGLPSFVVILLILILRGIYHRSMPQIYGLIHGDLcfipnIYAALFTAALVPL 5343
Cdd:cd15989     92 A---WqsYMAVTGKIRTRLIRKRFLCLGWGLPALVVAISMGFTKAKGYGTPHYCWLSLEGGL-----LYAFVGPAAAVVL 163
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5344 MCLVVVFVVF--------IHAYQLKPQWKGYDDVFRGRT--------------------NA-AEIPLILYLFALISMTWL 5394
Cdd:cd15989    164 VNMVIGILVFnklvsrdgILDKKLKHRAGQMSEPHSGLTlkcakcgvvsttalsattasNAmASLWSSCVVLPLLALTWM 243
                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1039743050 5395 WGGLHMA-YRHFWMLVLFVIFNSLQGLYVFVVYFILHNQ 5432
Cdd:cd15989    244 SAVLAMTdKRSILFQILFAVFDSLQGFVIVMVHCILRRE 282
EPTP pfam03736
EPTP domain; Mutations in the LGI/Epitempin gene can result in a special form of epilepsy, ...
2672-2713 9.67e-05

EPTP domain; Mutations in the LGI/Epitempin gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein contains a large repeat in its C terminal section. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold.


Pssm-ID: 461033  Cd Length: 41  Bit Score: 42.46  E-value: 9.67e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1039743050 2672 FAWHQTLPVRGVLGMALFSRGGSVFLAISQANIRqtSLLFTW 2713
Cdd:pfam03736    2 FVPYQTIPTRGARDVEPFSIGGDLFLAVANFSGD--SVIYRW 41
Calx-beta pfam03160
Calx-beta domain;
2863-2903 1.23e-04

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 43.78  E-value: 1.23e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1039743050 2863 SDFIPSLGELIFEPGDKEAIIAVNVLDDTVPEKEESFRVQL 2903
Cdd:pfam03160   50 DDYEPVEGELVFGPGETEKCINVTIIDDDVYEGDENFFVLL 90
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
2121-2201 1.64e-04

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 43.40  E-value: 1.64e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  2121 QLFVNREFGSLGAINVTYATVPGivslkNNTEGnlaepeSDFIPVVGSLVLEEGETTAAISITVLEDDIPELKEYFLVNL 2200
Cdd:smart00237   21 EVCVVRTGGARGPVVVPYSTEDG-----TATAG------SDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVRL 89

                    .
gi 1039743050  2201 T 2201
Cdd:smart00237   90 S 90
Calx-beta pfam03160
Calx-beta domain;
3676-3764 2.60e-04

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 43.01  E-value: 2.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3676 GIIEFDPkyTDISVEEDAGVITLPVLRLHGTY-GHVSADFSSRGFSAVPGG-YVLHGSSVTFQHGQNLSFINVSIIDDNG 3753
Cdd:pfam03160    2 GVIGFEP--PTYQVSENDGVAEVCVVRMSGTLrRTVVVPYRTEDGTATAGDdYEPVEGELVFGPGETEKCINVTIIDDDV 79
                           90
                   ....*....|.
gi 1039743050 3754 SEFEKQFEILL 3764
Cdd:pfam03160   80 YEGDENFFVLL 90
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3676-3764 2.93e-04

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 43.01  E-value: 2.93e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  3676 GIIEFD-PKYTdisVEEDAGVITLPVLRLHGTYGHVSADFSSRGFSAVPGG-YVLHGSSVTFQHGQNLSFINVSIIDDNG 3753
Cdd:smart00237    2 GSVGFEqPVYT---VSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSdYEPVPGELTFPPGETEKEIRIKIIDDDI 78
                            90
                    ....*....|.
gi 1039743050  3754 SEFEKQFEILL 3764
Cdd:smart00237   79 YEKDETFYVRL 89
PTX smart00159
Pentraxin / C-reactive protein / pentaxin family; This family form a doscoid pentameric ...
630-774 3.16e-04

Pentraxin / C-reactive protein / pentaxin family; This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.


Pssm-ID: 128463  Cd Length: 206  Bit Score: 45.34  E-value: 3.16e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   630 NFTFSAWVMPNANTNGfliakddshGSIY-YGVKIQTNEthvtLSLHYKTFGSNVTYI--AKSTVMKYLEEGVWLHVLII 706
Cdd:smart00159   32 AFTVCLWFYSDLSPRG---------YSLFsYATKGQDNE----LLLYKEKQGEYSLYIggKKVQFPVPESDGKWHHICTT 98
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039743050   707 LD--DGIIEFYLDGKAMPRgiKSL-KGEAITDGPGIL------RIGAGMDGGARFTGWMQDVRTYERKLTPEEIYEL 774
Cdd:smart00159   99 WEssSGIAELWVDGKPGVR--KGLaKGYTVKPGGSIIlgqeqdSYGGGFDATQSFVGEIGDLNMWDSVLSPEEIKSV 173
GPS smart00303
G-protein-coupled receptor proteolytic site domain; Present in latrophilin/CL-1, sea urchin ...
5126-5172 6.10e-04

G-protein-coupled receptor proteolytic site domain; Present in latrophilin/CL-1, sea urchin REJ and polycystin.


Pssm-ID: 197639  Cd Length: 49  Bit Score: 40.83  E-value: 6.10e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 1039743050  5126 HTSRCLLWNQAAASWlsDSQFCKVVEDASDYVECACSHMSVYAVYAQ 5172
Cdd:smart00303    1 FNPICVFWDESSGEW--STRGCELLETNGTHTTCSCNHLTTFAVLMD 45
7tmB1_GHRHR cd15270
growth-hormone-releasing hormone receptor, member of the class B family of seven-transmembrane ...
5189-5295 6.31e-04

growth-hormone-releasing hormone receptor, member of the class B family of seven-transmembrane G protein-coupled receptors; Growth hormone-releasing hormone receptor (GHRHR) is a member of the group of G protein-coupled receptors for structurally similar peptide hormones that also include secretin, pituitary adenylate cyclase activating polypeptide (PACAP), and vasoactive intestinal peptide. These receptors are classified into the subfamily B1 of class B GRCRs that consists of the classical hormone receptors and have been identified in all the vertebrates, from fishes to mammals, but are not present in plants, fungi, or prokaryotes. For all class B receptors, the large N-terminal extracellular domain plays a critical role in peptide hormone recognition. GHRHR is a specific receptor for the growth hormone-releasing hormone (GHRH) that controls the synthesis and release of growth hormone (GH) from the anterior pituitary somatotrophs. Mutations in the gene encoding GHRHR have been connected to isolated growth hormone deficiency (IGHD), a short-stature condition caused by deficient production of GH or lack of GH action. GHRH is preferentially coupled to a stimulatory G(s) protein, which leads to the activation of adenylate cyclase and thereby increases in intracellular cAMP level. GHRHR is found in mammals as well as zebrafish and chicken, whereas the GHRHR type 2, an ortholog of the GHRHR, has only been identified in ray-finned fish, chicken and Xenopus. Xenopus laevis GHRHR2 has been shown to interact with both endogenous GHRH and PACAP-related peptide (PRP).


Pssm-ID: 320398 [Multi-domain]  Cd Length: 268  Bit Score: 45.17  E-value: 6.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5189 ICISGLCLAVVSHMF-----CARHSMFAAKLLTHMMVAS---LGTQILFLASAYASPHLSEESCSAVAAVAHYLYLCQFS 5260
Cdd:cd15270     14 ISIVSLCVAVAILVAfrrlhCPRNYIHIQLFFTFILKAIavfIKDAALFQEDDTDHCSMSTVLCKVSVVFCHYCVMTNFF 93
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1039743050 5261 WMLIQSVNFWYVLVVSDEHTERRCLLFCLLSWGLP 5295
Cdd:cd15270     94 WLLVEAVYLNCLLASSFPRGKRYFWWLVLLGWGLP 128
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
862-941 7.40e-04

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 41.86  E-value: 7.40e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050   862 TEEGSTVSCVVERTRGALGYVHV-FYTISQIESEGinylvDDFANASGTITFLPWQRSEVLNLYVLDEDMPELNEYFRVT 940
Cdd:smart00237   14 SESDGEVEVCVVRTGGARGPVVVpYSTEDGTATAG-----SDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDETFYVR 88

                    .
gi 1039743050   941 L 941
Cdd:smart00237   89 L 89
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
4282-4403 7.50e-04

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 46.32  E-value: 7.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 4282 FSPSSrnITVSEDAQTIRICVQRLFGFHGDLIKVSYETTAGSAKPPEDFEAVqKGEVFFQRFQPEIDFEITIINDQLPEI 4361
Cdd:TIGR00845  404 FEPGH--YTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFT-EGTLVFKPGETQKEFRIGIIDDDIFEE 480
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1039743050 4362 EETFYINLTSVETRG----LGKGGVNWRPRL-NPDLsvAVVTIVDND 4403
Cdd:TIGR00845  481 DEHFYVRLSNLRVGSedgiLEANHVSAVAQLaSPNT--ATVTILDDD 525
caca TIGR00845
sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of ...
3671-3897 1.03e-03

sodium/calcium exchanger 1; The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family [Transport and binding proteins, Other]


Pssm-ID: 273296 [Multi-domain]  Cd Length: 928  Bit Score: 45.94  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3671 NDNAEGIIeFDP-KYTdisVEEDAGVITLPVLRLHGTYG-HVSADFSSRGFSAVPGG-YVLHGSSVTFQHGQNLSFINVS 3747
Cdd:TIGR00845  396 NDPVSKIF-FEPgHYT---CLENCGTVALTVVRRGGDLTnTVYVDYRTEDGTANAGSdYEFTEGTLVFKPGETQKEFRIG 471
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3748 IIDDNGSEFEKQFEILL--------------IGATGGAILGRHLVSKITIAKSDSPfGIIRFlNQSKISLPNPSSTMALH 3813
Cdd:TIGR00845  472 IIDDDIFEEDEHFYVRLsnlrvgsedgileaNHVSAVAQLASPNTATVTILDDDHA-GIFTF-EEDVFHVSESIGIMEVK 549
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 3814 LVleRTGGLLGEIQVSWEVVGPDAEEplppHNGDFADpVSGTVSFGDGEgGVRSIILRVCPHEETEAEETFIVQLKPLRE 3893
Cdd:TIGR00845  550 VL--RTSGARGTVIVPYRTVEGTARG----GGKDFED-TCGELEFENDE-TEKTIRVKIVDDEEYEKNDTFFIELGEPRW 621

                   ....
gi 1039743050 3894 AKLD 3897
Cdd:TIGR00845  622 AKRG 625
Calx-beta pfam03160
Calx-beta domain;
849-941 1.07e-03

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 41.08  E-value: 1.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  849 GLFGFTGACIPEMTEEGSTVSCVVeRTRGAL-GYVHV-FYTISQIESEGinylvDDFANASGTITFLPWQRSEVLNLYVL 926
Cdd:pfam03160    2 GVIGFEPPTYQVSENDGVAEVCVV-RMSGTLrRTVVVpYRTEDGTATAG-----DDYEPVEGELVFGPGETEKCINVTII 75
                           90
                   ....*....|....*
gi 1039743050  927 DEDMPELNEYFRVTL 941
Cdd:pfam03160   76 DDDVYEGDENFFVLL 90
Calx-beta pfam03160
Calx-beta domain;
1509-1600 1.10e-03

Calx-beta domain;


Pssm-ID: 397326 [Multi-domain]  Cd Length: 91  Bit Score: 41.08  E-value: 1.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 1509 GLFGFQNTKFIVEEpefNSVRVNVPIIRNSGTL-GNVTVQWVAIiNGQfATG--DLRVVSGNVTFAPGETIQTLLLEVLA 1585
Cdd:pfam03160    2 GVIGFEPPTYQVSE---NDGVAEVCVVRMSGTLrRTVVVPYRTE-DGT-ATAgdDYEPVEGELVFGPGETEKCINVTIID 76
                           90
                   ....*....|....*
gi 1039743050 1586 DDVPEIEEVVQVQLA 1600
Cdd:pfam03160   77 DDVYEGDENFFVLLS 91
7tmB2_GPR124-like_Adhesion_III cd15259
orphan GPR124 and related proteins, group III adhesion GPCRs, member of class B2 family of ...
5189-5426 1.21e-03

orphan GPR124 and related proteins, group III adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; group III adhesion GPCRs include orphan GPR123, GPR124, GPR125, and their closely related proteins. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. GPR123 is predominantly expressed in the CNS including thalamus, brain stem and regions containing large pyramidal cells. GPR124, also known as tumor endothelial marker 5 (TEM5), is highly expressed in tumor vessels and in the vasculature of the developing embryo. GPR124 is essentially required for proper angiogenic sprouting into neural tissue, CNS-specific vascularization, and formation of the blood-brain barrier. GPR124 also interacts with the PDZ domain of DLG1 (discs large homolog 1) through its PDZ-binding motif. Recently, studies of double-knockout mice showed that GPR124 functions as a co-activator of Wnt7a/Wnt7b-dependent beta-catenin signaling in brain endothelium. Furthermore, WNT7-stimulated beta-catenin signaling is regulated by GPR124's intracellular PDZ binding motif and leucine-rich repeats (LRR) in its N-terminal extracellular domain. GPR125 directly interacts with dishevelled (Dvl) via its intracellular C-terminus, and together, GPR125 and Dvl recruit a subset of planar cell polarity (PCP) components into membrane subdomains, a prerequisite for activation of Wnt/PCP signaling. Thus, GPR125 influences the noncanonical WNT/PCP pathway, which does not involve beta-catenin, through interacting with and modulating the distribution of Dvl.


Pssm-ID: 320387 [Multi-domain]  Cd Length: 260  Bit Score: 44.29  E-value: 1.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5189 ICISGLCLAVVSHMFCARhSMFAAKLLTHMMV----ASLGTQILFLASAYASPHLSeeSCSAVAAVAHYLYLCQFSWMLI 5264
Cdd:cd15259     14 LCLLCLLATIITYIVFHR-LIRISRKGRHMLVnlclHLLLTCVVFVGGINRTANQL--VCQAVGILLHYSTLCTLLWVGV 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5265 QSVNFWYVLVVSDEHT--------ERRCLL-FCLLSWGLPSFVVillililrGIYHRSMPQIYGliHGDLCFI---PNIY 5332
Cdd:cd15259     91 TARNMYKQVTKTAKPPqdedqpprPPKPMLrFYLIGWGIPLIIC--------GITAAVNLDNYS--TYDYCWLawdPSLG 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5333 AALFTAALVPLMCLvvvfVVFIHAY-QLKPQWKGYDDVFRGrtnaaeIPLILYLFALismTWLWGGLHMAYRHFWMLV-- 5409
Cdd:cd15259    161 AFYGPAALIVLVNC----IYFLRIYcQLKGAPVSFQSQLRG------AVITLFLYVA---MWACGALAVSQRYFLDLVfs 227
                          250
                   ....*....|....*...
gi 1039743050 5410 -LFVIFNSLQGLYVFVVY 5426
Cdd:cd15259    228 cLYGATCSSLGLFVLIHH 245
7tmB2_CELSR3 cd15993
Cadherin EGF LAG seven-pass G-type receptor 3, member of the class B2 family of ...
5244-5432 1.48e-03

Cadherin EGF LAG seven-pass G-type receptor 3, member of the class B2 family of seven-transmembrane G protein-coupled receptors; The group IV adhesion GPCRs include the cadherin EGF LAG seven-pass G-type receptors (CELSRs) and their Drosophila homolog Flamingo (also known as Starry night). These receptors are also classified as that belongs to the EGF-TM7 group of subfamily B2 adhesion GPCRs, because they contain EGF-like domains. Functionally, the group IV receptors act as key regulators of many physiological processes such as endocrine cell differentiation, neuronal migration, dendrite growth, axon, guidance, lymphatic vessel and valve formation, and planar cell polarity (PCP) during embryonic development. Three mammalian orthologs of Flamingo, Celsr1-3, are widely expressed in the nervous system from embryonic development until the adult stage. Each Celsr exhibits different expression patterns in the developing brain, suggesting that they serve distinct functions. Mutations of CELSR1 cause neural tube defects in the nervous system, while mutations of CELSR2 are associated with coronary heart disease. Moreover, CELSR1 and several other PCP signaling molecules, such as dishevelled, prickle, frizzled, have been shown to be upregulated in B lymphocytes of chronic lymphocytic leukemia patients. Celsr3 is expressed in both the developing and adult mouse brain. It has been functionally implicated in proper neuronal migration and axon guidance in the CNS. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. In the case of CELSR/Flamingo/Starry night, their extracellular domains comprise nine cadherin repeats linked to a series of epidermal growth factor (EGF)-like and laminin globular (G)-like domains. The cadherin repeats contain sequence motifs that mediate calcium-dependent cell-cell adhesion by homophilic interactions. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320659 [Multi-domain]  Cd Length: 254  Bit Score: 44.06  E-value: 1.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5244 CSAVAAVAHYLYLCQFSWMLIQSVNFwYVLVVSDEHTERRCLLFCL-LSWGLPSFVVillililrGIYHRSMPQIYGliH 5322
Cdd:cd15993     67 CTVVAILLHYFFLSTFAWLFVQGLHI-YRMQTEARNVNFGAMRFYYaIGWGVPAIIT--------GLAVGLDPEGYG--N 135
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5323 GDLCFIpNIYAALFTAALVPLMCLVVVF-VVFIHAYQLKPQwkgyddvfRGRTNAAEIPLIL------YLFALISMTWLW 5395
Cdd:cd15993    136 PDFCWI-SIHDKLVWSFAGPIVVVIVMNgVMFLLVARMSCS--------PGQKETKKTSVLMtlrssfLLLLLISATWLF 206
                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1039743050 5396 GGLHMAYRHFWMLVLFVIFNSLQGLYVFVVYFILHNQ 5432
Cdd:cd15993    207 GLLAVNNSVLAFHYLHAILCCLQGLAVLLLFCVLNEE 243
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
3310-3401 2.91e-03

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 39.93  E-value: 2.91e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  3310 GIFGFEKKTVMV---DGPllsddpdsyVTLTVVRSPGGKGAVRLHWAIEE---KAKDDLSPLNGTLYFDETESQKSVILH 3383
Cdd:smart00237    2 GSVGFEQPVYTVsesDGE---------VEVCVVRTGGARGPVVVPYSTEDgtaTAGSDYEPVPGELTFPPGETEKEIRIK 72
                            90
                    ....*....|....*...
gi 1039743050  3384 TLKDGMVGEDRRFIIELT 3401
Cdd:smart00237   73 IIDDDIYEKDETFYVRLS 90
7tmF_Frizzled_SMO cd13951
class F frizzled/smoothened family, member of the 7-transmembrane G protein-coupled receptor ...
5239-5354 3.11e-03

class F frizzled/smoothened family, member of the 7-transmembrane G protein-coupled receptor superfamily; The class F G protein-coupled receptors includes the frizzled (FZD) family of seven-transmembrane proteins consisting of 10 isoforms (FZD1-10) in mammals. The FZDs are activated by the wingless/int-1 (WNT) family of secreted lipoglycoproteins and preferentially couple to stimulatory G proteins of the Gs family, which activate adenylate cyclase, but can also couple to G proteins of the Gi/Gq families. In the WNT/beta-catenin signaling pathway, the WNT ligand binds to FZD and a lipoprotein receptor-related protein (LRP) co-receptor. This leads to the stabilization and translocation of beta-catenin to the nucleus, where it induces the activation of TCF/LEF family transcription factors. The conserved cytoplasmic motif of FZD, Lys-Thr-X-X-X-Trp, is required for activation of the WNT/beta-catenin pathway, and for membrane localization and phosphorylation of Dsh (dishevelled) protein, a key component of the WNT pathway that relays the WNT signals from the activated receptor to downstream effector proteins. Also included in the class F family is the closely related smoothened (SMO), which is a transmembrane G protein-coupled receptor that acts as the transducer of the hedgehog (HH) signaling pathway. SMO is activated by the hedgehog (HH) family of proteins acting on the 12-transmembrane domain receptor patched (PTCH), which constitutively inhibits SMO. Thus, in the absence of HH proteins, PTCH inhibits SMO signaling. On the other hand, binding of HH to the PTCH receptor activates its internalization and degradation, thereby releasing the PTCH inhibition of SMO. This allows SMO to trigger intracellular signaling and the subsequent activation of the Gli family of zinc finger transcriptional factors and induction of HH target gene expression (PTCH, Gli1, cyclin, Bcl-2, etc). The WNT and HH signaling pathways play critical roles in many developmental processes, such as cell-fate determination, cell proliferation, neural patterning, stem cell renewal, tissue homeostasis and repair, and tumorigenesis, among many others.


Pssm-ID: 320089  Cd Length: 314  Bit Score: 43.46  E-value: 3.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050 5239 LSEESCSAVAAVAHYLYLCQFSWMLIQSVNfWY---VLVVSDEHTERRCLLFCLLSWGLPSFVVILLIlilrgiyhrsmp 5315
Cdd:cd13951     89 SGNAPCAIVFLLTYYFGMAASIWWVILTLT-WFlsaGLKWSSEAIEKKSSYFHLVAWGLPAVLTIAVL------------ 155
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1039743050 5316 qIYGLIHGD----LCFIPNI-YAALFTAALVPLMCLVVVFVVFI 5354
Cdd:cd13951    156 -VLRKVDGDeltgICFVGNQnLDALRGFVLAPLFLYLILGTVFL 198
Calx_beta smart00237
Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin ...
2364-2447 8.28e-03

Domains in Na-Ca exchangers and integrin-beta4; Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)


Pssm-ID: 197594 [Multi-domain]  Cd Length: 90  Bit Score: 38.77  E-value: 8.28e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039743050  2364 EPTSLYVQES--VAVLVIVREpaQGLFGTVAVQFVvTEVNSSTESKDLSPSKGFIVLEEGVRSKTLRISAILDTEPEMDE 2441
Cdd:smart00237    7 EQPVYTVSESdgEVEVCVVRT--GGARGPVVVPYS-TEDGTATAGSDYEPVPGELTFPPGETEKEIRIKIIDDDIYEKDE 83

                    ....*.
gi 1039743050  2442 HFVCTL 2447
Cdd:smart00237   84 TFYVRL 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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